bd daemon sync: 2026-01-11 21:48:51

.beads/issues.jsonl

@@ -661,6 +661,7 @@
 {"id":"bd-8v5o","title":"bd doctor --fix hydrates issues that remain in deletions manifest, causing perpetual skip warnings","description":"When bd doctor --fix hydrates issues from git history, it doesn't remove them from the deletions manifest. This causes a conflict where:\n1. Issue exists in database as 'open'\n2. Issue also exists in deletions manifest\n3. Every sync reports 'Skipping bd-xxx (in deletions manifest)'\n4. Issue is 'Protected from incorrect sanitization'\n\n**Reproduction:**\n1. Run bd doctor --fix (which hydrates issues from git history)\n2. Run bd sync\n3. Observe conflicting messages about protected issues being skipped\n\n**Affected issues in this session:**\nbd-eyto, bd-6rl, bd-y2v, bd-abjw, bd-a0cp, bd-mql4, bd-nl2\n\n**Expected behavior:**\nWhen hydrating an issue, also remove it from the deletions manifest to prevent conflict.\n\n**Workaround:** Manually remove conflicting IDs from deletions.jsonl","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-15T17:28:40.060713-08:00","updated_at":"2025-12-16T00:41:33.165408-08:00","closed_at":"2025-12-16T00:41:33.165408-08:00"}
 {"id":"bd-8wa","title":"Code Review Sweep: thorough","description":"Perform thorough code review sweep based on accumulated activity.\n\n**AI Reasoning:**\nSignificant code volume added (150,273 lines) across multiple critical areas, including cmd/bd, internal/storage/sqlite, and internal/rpc. High file change count (616) indicates substantial refactoring or new functionality. The metrics suggest potential for subtle architectural or implementation issues that warrant review.\n\n**Scope:** thorough\n**Target Areas:** cmd/bd, internal/storage/sqlite, internal/rpc\n**Estimated Files:** 12\n**Estimated Cost:** $5\n\n**Task:**\nReview files for non-obvious issues that agents miss during focused work:\n- Inefficiencies (algorithmic, resource usage)\n- Subtle bugs (race conditions, off-by-one, copy-paste)\n- Poor patterns (coupling, complexity, duplication)\n- Missing best practices (error handling, docs, tests)\n- Unnamed anti-patterns\n\nFile discovered issues with detailed reasoning and suggestions.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-21T10:25:37.081296-05:00","updated_at":"2025-12-14T00:32:11.046909-08:00","closed_at":"2025-12-13T23:33:16.521045-08:00"}
 {"id":"bd-8wgo","title":"bd merge omits priority:0 due to omitempty JSON tag","description":"GitHub issue #671. The merge code in internal/merge/merge.go uses 'omitempty' on the Priority field, which causes priority:0 (P0/critical) to be dropped from JSON output since 0 is Go's zero value for int. Fix: either remove omitempty from Priority field or use a pointer (*int). This affects the git merge driver and causes P0 issues to lose their priority.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-21T14:35:15.083146-08:00","updated_at":"2025-12-21T15:41:14.522554-08:00","closed_at":"2025-12-21T15:41:14.522554-08:00"}
+{"id":"bd-8wutd","title":"Session ended: gt-beads-refinery","status":"closed","priority":2,"issue_type":"event","owner":"steve.yegge@gmail.com","created_at":"2026-01-11T21:48:50.736526-08:00","created_by":"beads/refinery","updated_at":"2026-01-11T21:48:50.804731-08:00","closed_at":"2026-01-11T21:48:50.804731-08:00","close_reason":"auto-closed session cost wisp","ephemeral":true}
 {"id":"bd-8x3w","title":"Add composite index (issue_id, type) on dependencies table","description":"GetBlockedIssues uses EXISTS clauses that filter by issue_id AND type together.\n\n**Query pattern (ready.go:427-429):**\n```sql\nEXISTS (\n  SELECT 1 FROM dependencies d2\n  WHERE d2.issue_id = i.id AND d2.type = 'blocks'\n)\n```\n\n**Problem:** Only idx_dependencies_issue exists. SQLite must filter type after index lookup.\n\n**Solution:** Add migration:\n```sql\nCREATE INDEX IF NOT EXISTS idx_dependencies_issue_type ON dependencies(issue_id, type);\n```\n\n**Note:** This complements the existing idx_dependencies_depends_on_type for the reverse direction.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-22T22:58:52.876846-08:00","updated_at":"2025-12-22T23:15:13.840789-08:00","closed_at":"2025-12-22T23:15:13.840789-08:00","dependencies":[{"issue_id":"bd-8x3w","depends_on_id":"bd-h0we","type":"discovered-from","created_at":"2025-12-22T22:58:52.877536-08:00","created_by":"daemon"}]}
 {"id":"bd-8x43","title":"Add 'bd where' command to show active beads location","description":"## Problem\n\nWhen using redirects, it's unclear which beads database is actually being used. This caused debugging confusion during the v0.39.0 release.\n\n## Proposed Solution\n\nAdd `bd where` command:\n\n```bash\nbd where\n# → /Users/stevey/gt/beads/mayor/rig/.beads (via redirect from crew/dave/.beads)\n\nbd where --json\n# → {\"path\": \"...\", \"redirected_from\": \"...\", \"prefix\": \"bd\"}\n```\n\n## Alternatives Considered\n\n- `bd info --beads-path` - but `bd where` is more discoverable\n- Just fix the UX so it's never confusing - defense in depth is better\n\n## Desire Paths\n\nThis supports the 'desire paths' design principle: make the system's behavior visible so agents can debug and understand it.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-27T21:15:52.666948-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-27T21:27:50.301295-08:00","closed_at":"2025-12-27T21:27:50.301295-08:00"}
 {"id":"bd-8xnf","title":"Add bd mol progress command","description":"New command showing molecule progress without listing steps.\n\nOutput format:\n  Molecule: gt-hanoi-xyz (Towers of Hanoi - 20 disks)\n  Progress: 347,892 / 1,048,575 (33.2%)\n  Current step: gt-hanoi-xyz.move-347893\n  Rate: ~1,200 steps/hour\n  ETA: ~9.7 hours remaining\n\nUses indexed query on dependencies table:\n  SELECT COUNT(*), SUM(CASE WHEN status='closed' THEN 1 ELSE 0 END)\n  FROM dependencies d JOIN issues i ON d.issue_id = i.id\n  WHERE d.depends_on_id = ? AND d.type = 'parent-child'","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-31T00:52:52.613276-08:00","created_by":"gastown/crew/max","updated_at":"2025-12-31T12:34:38.443209-08:00","closed_at":"2025-12-31T12:34:38.443209-08:00","close_reason":"Implemented bd mol progress command with efficient indexed queries","dependencies":[{"issue_id":"bd-8xnf","depends_on_id":"bd-5nu1","type":"parent-child","created_at":"2025-12-31T00:54:00.815655-08:00","created_by":"gastown/crew/max"}]}