fix(beads-mcp): prevent subprocess stdin inheritance breaking MCP protocol

When running as an MCP server, subprocesses must not inherit stdin because
MCP uses stdin for JSON-RPC protocol communication. Inherited stdin causes
subprocesses to block indefinitely waiting for input or steal bytes from
the MCP protocol stream.

Added stdin=subprocess.DEVNULL (or asyncio.subprocess.DEVNULL for async)
to all subprocess calls:
- server.py: _resolve_workspace_root() git subprocess
- tools.py: _resolve_workspace_root() git subprocess
- bd_client.py: _run_command(), _check_version(), add_dependency(),
  quickstart(), and init() async subprocess calls

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>

integrations/beads-mcp/src/beads_mcp/bd_client.py

@@ -4,6 +4,7 @@ import asyncio
 import json
 import os
 import re
+import sys
 from abc import ABC, abstractmethod
 from typing import Any, List, Optional
 
@@ -290,6 +291,7 @@ class BdCliClient(BdClientBase):
         try:
             process = await asyncio.create_subprocess_exec(
                 *cmd,
+                stdin=asyncio.subprocess.DEVNULL,  # Prevent inheriting MCP's stdin
                 stdout=asyncio.subprocess.PIPE,
                 stderr=asyncio.subprocess.PIPE,
                 cwd=working_dir,
@@ -333,6 +335,7 @@ class BdCliClient(BdClientBase):
             process = await asyncio.create_subprocess_exec(
                 self.bd_path,
                 "version",
+                stdin=asyncio.subprocess.DEVNULL,  # Prevent inheriting MCP's stdin
                 stdout=asyncio.subprocess.PIPE,
                 stderr=asyncio.subprocess.PIPE,
                 cwd=self._get_working_dir(),
@@ -583,6 +586,7 @@ class BdCliClient(BdClientBase):
         try:
             process = await asyncio.create_subprocess_exec(
                 *cmd,
+                stdin=asyncio.subprocess.DEVNULL,  # Prevent inheriting MCP's stdin
                 stdout=asyncio.subprocess.PIPE,
                 stderr=asyncio.subprocess.PIPE,
                 cwd=self._get_working_dir(),
@@ -610,6 +614,7 @@ class BdCliClient(BdClientBase):
         try:
             process = await asyncio.create_subprocess_exec(
                 *cmd,
+                stdin=asyncio.subprocess.DEVNULL,  # Prevent inheriting MCP's stdin
                 stdout=asyncio.subprocess.PIPE,
                 stderr=asyncio.subprocess.PIPE,
                 cwd=self._get_working_dir(),
@@ -754,6 +759,7 @@ class BdCliClient(BdClientBase):
         try:
             process = await asyncio.create_subprocess_exec(
                 *cmd,
+                stdin=asyncio.subprocess.DEVNULL,  # Prevent inheriting MCP's stdin
                 stdout=asyncio.subprocess.PIPE,
                 stderr=asyncio.subprocess.PIPE,
                 cwd=self._get_working_dir(),

integrations/beads-mcp/src/beads_mcp/server.py

@@ -218,6 +218,7 @@ def _resolve_workspace_root(path: str) -> str:
             text=True,
             check=False,
             shell=sys.platform == "win32",
+            stdin=subprocess.DEVNULL,  # Prevent inheriting MCP's stdin
         )
         if result.returncode == 0:
             return result.stdout.strip()

integrations/beads-mcp/src/beads_mcp/tools.py

@@ -124,6 +124,7 @@ def _resolve_workspace_root(path: str) -> str:
             text=True,
             check=False,
             shell=sys.platform == "win32",
+            stdin=subprocess.DEVNULL,  # Prevent inheriting MCP's stdin
         )
         if result.returncode == 0:
             return result.stdout.strip()