Update documentation for bd mol pour/wisp command structure
Updated all documentation and help text to reflect: - bd pour → bd mol pour - bd ephemeral → bd mol wisp - bd ephemeral list → bd mol wisp list - bd ephemeral gc → bd mol wisp gc Files updated: - docs/MOLECULES.md - docs/CLI_REFERENCE.md - docs/ARCHITECTURE.md - docs/DELETIONS.md - skills/beads/references/MOLECULES.md - cmd/bd/mol_catalog.go - cmd/bd/mol_current.go - cmd/bd/mol_distill.go - cmd/bd/cook.go
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@@ -350,8 +350,8 @@ Beads uses a chemistry metaphor for template-based workflows. See [MOLECULES.md]
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| Phase | State | Storage | Command |
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|-------|-------|---------|---------|
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| Solid | Proto | `.beads/` | `bd mol catalog` |
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| Liquid | Mol | `.beads/` | `bd pour` |
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| Vapor | Wisp | `.beads/` (Wisp=true, not exported) | `bd ephemeral create` |
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| Liquid | Mol | `.beads/` | `bd mol pour` |
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| Vapor | Wisp | `.beads/` (Ephemeral=true, not exported) | `bd mol wisp` |
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### Proto/Template Commands
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@@ -370,32 +370,32 @@ bd mol distill <epic-id> --json
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```bash
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# Instantiate proto as persistent mol (solid → liquid)
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bd pour <proto-id> --var key=value --json
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bd mol pour <proto-id> --var key=value --json
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# Preview what would be created
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bd pour <proto-id> --var key=value --dry-run
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bd mol pour <proto-id> --var key=value --dry-run
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# Assign root issue
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bd pour <proto-id> --var key=value --assignee alice --json
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bd mol pour <proto-id> --var key=value --assignee alice --json
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# Attach additional protos during pour
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bd pour <proto-id> --attach <other-proto> --json
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bd mol pour <proto-id> --attach <other-proto> --json
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```
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### Wisp Commands
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```bash
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# Instantiate proto as ephemeral issue (solid → vapor)
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bd ephemeral create <proto-id> --var key=value --json
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# Instantiate proto as ephemeral wisp (solid → vapor)
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bd mol wisp <proto-id> --var key=value --json
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# List all wisps
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bd ephemeral list --json
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bd ephemeral list --all --json # Include closed
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bd mol wisp list --json
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bd mol wisp list --all --json # Include closed
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# Garbage collect orphaned wisps
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bd ephemeral gc --json
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bd ephemeral gc --age 24h --json # Custom age threshold
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bd ephemeral gc --dry-run # Preview what would be cleaned
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bd mol wisp gc --json
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bd mol wisp gc --age 24h --json # Custom age threshold
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bd mol wisp gc --dry-run # Preview what would be cleaned
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```
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### Bonding (Combining Work)
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