Add --shared flag to bd hooks install for versioned hooks

Implements support for installing git hooks to a versioned directory
(.beads-hooks/) that can be committed to the repository and shared with
team members. This solves the team collaboration issue where hooks need
to be installed in pre-built containers.

Changes:
- Add --shared flag to 'bd hooks install' command
- Install hooks to .beads-hooks/ when --shared is used
- Automatically configure git config core.hooksPath
- Update help text to explain shared mode

Fixes #229

.beads-hooks/post-checkout

@@ -0,0 +1,40 @@
+#!/usr/bin/env bash
+# bd-hooks-version: 0.24.2
+#
+# Beads post-checkout hook
+# Automatically imports JSONL to SQLite database after checking out branches
+#
+# Install: cp examples/git-hooks/post-checkout .git/hooks/post-checkout && chmod +x .git/hooks/post-checkout
+
+# Arguments provided by git:
+# $1 = ref of previous HEAD
+# $2 = ref of new HEAD
+# $3 = flag (1 if branch checkout, 0 if file checkout)
+
+# Only run on branch checkouts
+if [[ "$3" != "1" ]]; then
+    exit 0
+fi
+
+set -e
+
+# Check if bd is installed
+if ! command -v bd &> /dev/null; then
+    exit 0
+fi
+
+# Check if issues.jsonl exists
+if [[ ! -f .beads/issues.jsonl ]]; then
+    exit 0
+fi
+
+# Import issues from JSONL
+echo "🔗 Importing beads issues from JSONL..."
+
+if bd import -i .beads/issues.jsonl 2>/dev/null; then
+    echo "✓ Beads issues imported successfully"
+else
+    echo "Warning: bd import failed"
+fi
+
+exit 0

.beads-hooks/post-merge

@@ -0,0 +1,45 @@
+#!/bin/sh
+# bd-hooks-version: 0.24.2
+#
+# bd (beads) post-merge hook
+#
+# This hook syncs the bd database after a git pull or merge:
+# 1. Checks if any .beads/*.jsonl file was updated
+# 2. Runs 'bd sync --import-only' to import changes
+#
+# Installation:
+#   cp examples/git-hooks/post-merge .git/hooks/post-merge
+#   chmod +x .git/hooks/post-merge
+#
+# Or use the install script:
+#   examples/git-hooks/install.sh
+
+# Check if bd is available
+if ! command -v bd >/dev/null 2>&1; then
+    echo "Warning: bd command not found, skipping post-merge sync" >&2
+    exit 0
+fi
+
+# Check if we're in a bd workspace
+if [ ! -d .beads ]; then
+    # Not a bd workspace, nothing to do
+    exit 0
+fi
+
+# Check if any JSONL file exists in .beads/
+if ! ls .beads/*.jsonl >/dev/null 2>&1; then
+    exit 0
+fi
+
+# Run bd sync --import-only to import the updated JSONL
+# This is more robust than direct import as it handles all edge cases
+# Capture both stdout and stderr to show user what went wrong
+if ! output=$(bd sync --import-only 2>&1); then
+    echo "Warning: Failed to sync bd changes after merge" >&2
+    echo "$output" >&2
+    echo "" >&2
+    echo "Run 'bd sync --import-only' manually to resolve" >&2
+    # Don't fail the merge, just warn
+fi
+
+exit 0

.beads-hooks/pre-commit

@@ -0,0 +1,44 @@
+#!/bin/sh
+# bd-hooks-version: 0.24.2
+#
+# bd (beads) pre-commit hook
+#
+# This hook ensures that any pending bd issue changes are flushed to
+# .beads/beads.jsonl before the commit is created, preventing the
+# race condition where daemon auto-flush fires after the commit.
+#
+# Installation:
+#   cp examples/git-hooks/pre-commit .git/hooks/pre-commit
+#   chmod +x .git/hooks/pre-commit
+#
+# Or use the install script:
+#   examples/git-hooks/install.sh
+
+# Check if bd is available
+if ! command -v bd >/dev/null 2>&1; then
+    echo "Warning: bd command not found, skipping pre-commit flush" >&2
+    exit 0
+fi
+
+# Check if we're in a bd workspace
+if [ ! -d .beads ]; then
+    # Not a bd workspace, nothing to do
+    exit 0
+fi
+
+# Flush pending changes to JSONL
+# Use --flush-only to skip git operations (we're already in a git hook)
+# Suppress output unless there's an error
+if ! bd sync --flush-only >/dev/null 2>&1; then
+    echo "Error: Failed to flush bd changes to JSONL" >&2
+    echo "Run 'bd sync --flush-only' manually to diagnose" >&2
+    exit 1
+fi
+
+# Stage both possible JSONL files (backward compatibility)
+# git add is harmless if file doesn't exist
+for f in .beads/beads.jsonl .beads/issues.jsonl; do
+    [ -f "$f" ] && git add "$f" 2>/dev/null || true
+done
+
+exit 0

.beads-hooks/pre-push

@@ -0,0 +1,62 @@
+#!/bin/sh
+# bd-hooks-version: 0.24.2
+#
+# bd (beads) pre-push hook
+#
+# This hook prevents pushing stale JSONL by:
+# 1. Flushing any pending in-memory changes to JSONL (if bd available)
+# 2. Checking for uncommitted changes (staged, unstaged, untracked, deleted)
+# 3. Failing the push with clear instructions if changes found
+#
+# The pre-commit hook already exports changes, but this catches:
+# - Changes made between commit and push
+# - Pending debounced flushes (5s daemon delay)
+#
+# Installation:
+#   cp examples/git-hooks/pre-push .git/hooks/pre-push
+#   chmod +x .git/hooks/pre-push
+#
+# Or use the install script:
+#   examples/git-hooks/install.sh
+
+# Check if we're in a bd workspace
+if [ ! -d .beads ]; then
+    # Not a bd workspace, nothing to do
+    exit 0
+fi
+
+# Optionally flush pending bd changes so they surface in JSONL
+# This prevents the race where a debounced flush lands after the check
+if command -v bd >/dev/null 2>&1; then
+    bd sync --flush-only >/dev/null 2>&1 || true
+fi
+
+# Collect all tracked or existing JSONL files (supports both old and new names)
+FILES=""
+for f in .beads/beads.jsonl .beads/issues.jsonl; do
+    # Include file if it exists in working tree OR is tracked by git (even if deleted)
+    if git ls-files --error-unmatch "$f" >/dev/null 2>&1 || [ -f "$f" ]; then
+        FILES="$FILES $f"
+    fi
+done
+
+# Check for any uncommitted changes using porcelain status
+# This catches: staged, unstaged, untracked, deleted, renamed, and conflicts
+if [ -n "$FILES" ]; then
+    # shellcheck disable=SC2086
+    if [ -n "$(git status --porcelain -- $FILES 2>/dev/null)" ]; then
+        echo "❌ Error: Beads JSONL has uncommitted changes" >&2
+        echo "" >&2
+        echo "You made changes to bd issues between your last commit and this push." >&2
+        echo "Please commit the updated JSONL before pushing:" >&2
+        echo "" >&2
+        # shellcheck disable=SC2086
+        echo "  git add $FILES" >&2
+        echo '  git commit -m "Update bd JSONL"' >&2
+        echo "  git push" >&2
+        echo "" >&2
+        exit 1
+    fi
+fi
+
+exit 0