diff --git a/.beads/issues.jsonl b/.beads/issues.jsonl
index dee176ad..2551141e 100644
--- a/.beads/issues.jsonl
+++ b/.beads/issues.jsonl
@@ -1,17 +1,17 @@
 {"id":"bd-00u3","title":"Deprecate bd mol run after gt absorbs its semantics","description":"bd mol run is a convenience combo (pour + update + pin) that feels like orchestration but lives in the data layer. This blurs the bd/gt architectural boundary.\n\n## Current State\n- bd mol run = bd pour + bd update --status=in_progress + bd pin --for me\n- gt spawn depends on bd mol run (shells out to it)\n\n## Proposed Change\nOnce gt spawn inlines the pour+assign+pin logic:\n1. Deprecate bd mol run with a warning pointing to gt spawn\n2. Eventually remove bd mol run entirely\n\n## Why\n- bd should be pure data operations (pour, update, pin, close)\n- gt should own orchestration (spawn, sling, hook, handoff)\n- Standalone bd users can run the three commands separately or script them\n\n## Blocked By\ngastown issue gt-r7jj2 (Move mol run semantics from bd into gt spawn)","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-25T00:59:03.667211-08:00","updated_at":"2025-12-25T01:04:51.755145-08:00","closed_at":"2025-12-25T01:04:51.755145-08:00"}
 {"id":"bd-05a8","title":"Split large cmd/bd files: doctor.go (2948 lines), sync.go (2121 lines)","description":"Code health review found several oversized files:\n\n1. doctor.go - 2948 lines, 48 functions mixed together\n   - Should split into doctor/checks/*.go for individual diagnostics\n   - applyFixes() and previewFixes() are nearly identical\n\n2. sync.go - 2121 lines\n   - ZFC (Zero Flush Check) logic embedded inline (lines 213-247)\n   - Multiple mode handlers should be extracted\n\n3. init.go - 1732 lines\n4. compact.go - 1097 lines\n5. show.go - 1069 lines\n\nRecommendation: Extract into focused sub-packages or split into logical files.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-16T18:17:18.169927-08:00","updated_at":"2025-12-23T23:58:24.591999-08:00","closed_at":"2025-12-23T23:58:24.591999-08:00"}
 {"id":"bd-06px","title":"bd sync --from-main fails: unknown flag --no-git-history","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-17T14:32:02.998106-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"}
-{"id":"bd-077e","title":"Add close_reason field to CLI schema and documentation","description":"PR #551 persists close_reason, but the CLI documentation may not mention this field as part of the issue schema.\n\n## Current State\n- close_reason is now persisted in database\n- `bd show --json` will return close_reason in JSON output\n- Documentation may not reflect this new field\n\n## What's Missing\n- CLI reference documentation for close_reason field\n- Schema documentation showing close_reason is a top-level issue field\n- Example output showing close_reason in bd show --json\n- bd close command documentation should mention close_reason parameter is optional\n\n## Suggested Action\n1. Update README.md or CLI reference docs to list close_reason as an issue field\n2. Add example to bd close documentation\n3. Update any type definitions or schema specs\n4. Consider adding close_reason to verbose list output (bd list --verbose)","status":"hooked","priority":3,"issue_type":"task","created_at":"2025-12-14T14:25:28.448654-08:00","updated_at":"2025-12-30T15:44:43.350245-08:00","dependencies":[{"issue_id":"bd-077e","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:28.449968-08:00","created_by":"stevey"}]}
+{"id":"bd-077e","title":"Add close_reason field to CLI schema and documentation","description":"PR #551 persists close_reason, but the CLI documentation may not mention this field as part of the issue schema.\n\n## Current State\n- close_reason is now persisted in database\n- `bd show --json` will return close_reason in JSON output\n- Documentation may not reflect this new field\n\n## What's Missing\n- CLI reference documentation for close_reason field\n- Schema documentation showing close_reason is a top-level issue field\n- Example output showing close_reason in bd show --json\n- bd close command documentation should mention close_reason parameter is optional\n\n## Suggested Action\n1. Update README.md or CLI reference docs to list close_reason as an issue field\n2. Add example to bd close documentation\n3. Update any type definitions or schema specs\n4. Consider adding close_reason to verbose list output (bd list --verbose)","status":"hooked","priority":3,"issue_type":"task","created_at":"2025-12-14T14:25:28.448654-08:00","updated_at":"2025-12-30T15:55:53.174323-08:00","dependencies":[{"issue_id":"bd-077e","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:28.449968-08:00","created_by":"stevey"}]}
 {"id":"bd-0a43","title":"Split monolithic sqlite.go into focused files","description":"internal/storage/sqlite/sqlite.go is 1050 lines containing initialization, 20+ CRUD methods, query building, and schema management.\n\nSplit into:\n- store.go: Store struct \u0026 initialization (150 lines)\n- bead_queries.go: Bead CRUD (300 lines)\n- work_queries.go: Work queries (200 lines)  \n- stats_queries.go: Statistics (150 lines)\n- schema.go: Schema \u0026 migrations (150 lines)\n- helpers.go: Common utilities (100 lines)\n\nImpact: Impossible to understand at a glance; hard to find specific functionality; high cognitive load\n\nEffort: 6-8 hours","status":"tombstone","priority":0,"issue_type":"task","created_at":"2025-11-16T14:51:16.520465-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-0d5p","title":"Fix TestRunSync_Timeout failing on macOS","description":"The hooks timeout test fails because exec.CommandContext doesn't properly terminate child processes of shell scripts on macOS. The test creates a hook that runs 'sleep 60' with a 500ms timeout, but it waits the full 60 seconds.\n\nOptions to fix:\n- Use SysProcAttr{Setpgid: true} to create process group and kill the group\n- Skip test on darwin with build tag\n- Use a different approach for timeout testing\n\nLocation: internal/hooks/hooks_test.go:220-253","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T20:52:51.771217-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"}
-{"id":"bd-0e02","title":"Code smell: Inconsistent error handling patterns","description":"Commands use a mix of error handling patterns:\n- FatalError()\n- FatalErrorRespectJSON()\n- fmt.Fprintf(os.Stderr, ...) + os.Exit(1)\n- Silent continue\n- Inconsistent resource cleanup (result.Close())\n\n**Example in show.go lines 89-146:**\nDifferent error paths use different patterns, some close resources, some don't.\n\n**Acceptance Criteria:**\n- [ ] Document error handling contract\n- [ ] Standardize on consistent pattern\n- [ ] Use defer for resource cleanup\n- [ ] Create helper for common fetch-and-handle pattern\n- [ ] Tests pass","status":"closed","priority":3,"issue_type":"chore","created_at":"2025-12-28T18:59:30.118-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-30T15:44:43.362524-08:00","closed_at":"2025-12-30T07:02:03.530317-08:00","close_reason":"Implemented: Added LogError, LogErrorRespectJSON, LogNotFound, LogNotFoundRespectJSON helpers to errors.go. Standardized show.go to use these helpers. Updated ERROR_HANDLING.md documentation. Tests pass.","dependencies":[{"issue_id":"bd-0e02","depends_on_id":"bd-ox1o","type":"blocks","created_at":"2025-12-28T19:00:23.683836-08:00","created_by":"daemon"}]}
+{"id":"bd-0e02","title":"Code smell: Inconsistent error handling patterns","description":"Commands use a mix of error handling patterns:\n- FatalError()\n- FatalErrorRespectJSON()\n- fmt.Fprintf(os.Stderr, ...) + os.Exit(1)\n- Silent continue\n- Inconsistent resource cleanup (result.Close())\n\n**Example in show.go lines 89-146:**\nDifferent error paths use different patterns, some close resources, some don't.\n\n**Acceptance Criteria:**\n- [ ] Document error handling contract\n- [ ] Standardize on consistent pattern\n- [ ] Use defer for resource cleanup\n- [ ] Create helper for common fetch-and-handle pattern\n- [ ] Tests pass","status":"closed","priority":3,"issue_type":"chore","created_at":"2025-12-28T18:59:30.118-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-30T15:55:53.176129-08:00","closed_at":"2025-12-30T07:02:03.530317-08:00","dependencies":[{"issue_id":"bd-0e02","depends_on_id":"bd-ox1o","type":"blocks","created_at":"2025-12-28T19:00:23.683836-08:00","created_by":"daemon"}]}
 {"id":"bd-0e3m","title":"Merge: jade-1767138549967","description":"branch: polecat/jade-1767138549967\ntarget: main\nsource_issue: jade-1767138549967\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T15:55:27.93798-08:00","created_by":"beads/polecats/jade","updated_at":"2025-12-30T15:55:27.93798-08:00"}
 {"id":"bd-0fvq","title":"bd doctor should recommend bd prime migration for existing repos","description":"bd doctor should detect old beads integration patterns and recommend migrating to bd prime approach.\n\n## Current behavior\n- bd doctor checks if Claude hooks are installed globally\n- Doesn't check project-level integration (AGENTS.md, CLAUDE.md)\n- Doesn't recommend migration for repos using old patterns\n\n## Desired behavior\nbd doctor should detect and suggest:\n\n1. **Old slash command pattern detected**\n   - Check for /beads:* references in AGENTS.md, CLAUDE.md\n   - Suggest: These slash commands are deprecated, use bd prime hooks instead\n   \n2. **No agent documentation**\n   - Check if AGENTS.md or CLAUDE.md exists\n   - Suggest: Run 'bd onboard' or 'bd setup claude' to document workflow\n   \n3. **Old MCP-only pattern**\n   - Check for instructions to use MCP tools but no bd prime hooks\n   - Suggest: Add bd prime hooks for better token efficiency\n\n4. **Migration path**\n   - Show: 'Run bd setup claude to add SessionStart/PreCompact hooks'\n   - Show: 'Update AGENTS.md to reference bd prime instead of slash commands'\n\n## Example output\n\n⚠ Warning: Old beads integration detected in CLAUDE.md\n  Found: /beads:* slash command references (deprecated)\n  Recommend: Migrate to bd prime hooks for better token efficiency\n  Fix: Run 'bd setup claude' and update CLAUDE.md\n\n💡 Tip: bd prime + hooks reduces token usage by 80-99% vs slash commands\n  MCP mode: ~50 tokens vs ~10.5k for full MCP scan\n  CLI mode: ~1-2k tokens with automatic context recovery\n\n## Benefits\n- Helps existing repos adopt new best practices\n- Clear migration path for users\n- Better token efficiency messaging","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-11-12T03:20:25.567748-08:00","updated_at":"2025-12-23T22:33:23.931274-08:00","closed_at":"2025-12-23T22:33:23.931274-08:00"}
 {"id":"bd-0j5y","title":"Merge: bd-05a8","description":"branch: polecat/valkyrie\ntarget: main\nsource_issue: bd-05a8\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-23T20:50:27.125378-08:00","updated_at":"2025-12-23T21:21:57.69697-08:00","closed_at":"2025-12-23T21:21:57.69697-08:00"}
 {"id":"bd-0kai","title":"Work on beads-ocs: Thin shim hooks to eliminate version d...","description":"Work on beads-ocs: Thin shim hooks to eliminate version drift (GH#615). Replace full hook scripts with thin shims that call bd hooks run. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:57:22.91347-08:00","updated_at":"2025-12-20T00:49:51.926425-08:00","closed_at":"2025-12-19T23:24:08.828172-08:00"}
-{"id":"bd-0kue","title":"Merge: onyx-1767106262992","description":"branch: polecat/onyx-1767106262992\ntarget: main\nsource_issue: onyx-1767106262992\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T06:59:46.964658-08:00","created_by":"beads/polecats/onyx","updated_at":"2025-12-30T15:44:43.3647-08:00","closed_at":"2025-12-30T10:27:23.072233-08:00"}
+{"id":"bd-0kue","title":"Merge: onyx-1767106262992","description":"branch: polecat/onyx-1767106262992\ntarget: main\nsource_issue: onyx-1767106262992\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T06:59:46.964658-08:00","created_by":"beads/polecats/onyx","updated_at":"2025-12-30T10:27:23.072233-08:00","closed_at":"2025-12-30T10:27:23.072233-08:00","close_reason":"Branch no longer exists on remote - stale MR"}
 {"id":"bd-0oqz","title":"Add GetMoleculeProgress RPC endpoint","description":"New RPC endpoint to get detailed progress for a specific molecule. Returns: moleculeID, title, assignee, and list of steps with their status (done/current/ready/blocked), start/close times. Used when user expands a worker in the activity feed TUI.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-23T16:26:38.137866-08:00","updated_at":"2025-12-23T18:27:49.033335-08:00","closed_at":"2025-12-23T18:27:49.033335-08:00"}
-{"id":"bd-0qx5","title":"Implement Jira issue timestamp comparison for sync","description":"In cmd/bd/jira.go:633, there's a TODO for a full implementation that would fetch the Jira issue and compare timestamps to detect conflicts during sync.\n\nFile: cmd/bd/jira.go:633","status":"closed","priority":4,"issue_type":"feature","assignee":"beads/polecats/topaz","created_at":"2025-12-28T16:32:52.601594-08:00","created_by":"stevey","updated_at":"2025-12-30T16:00:07.968921-08:00","closed_at":"2025-12-30T16:00:07.968921-08:00","close_reason":"Implemented Jira timestamp comparison for sync. Added fetchJiraIssueTimestamp() to fetch timestamps from Jira REST API, updated detectJiraConflicts() to compare actual timestamps, and improved conflict resolution functions to display timestamp details."}
+{"id":"bd-0qx5","title":"Implement Jira issue timestamp comparison for sync","description":"In cmd/bd/jira.go:633, there's a TODO for a full implementation that would fetch the Jira issue and compare timestamps to detect conflicts during sync.\n\nFile: cmd/bd/jira.go:633","status":"closed","priority":4,"issue_type":"feature","assignee":"beads/polecats/topaz","created_at":"2025-12-28T16:32:52.601594-08:00","created_by":"stevey","updated_at":"2025-12-30T16:04:42.157717-08:00","closed_at":"2025-12-30T16:00:07.968921-08:00"}
 {"id":"bd-0vg","title":"Pinned issues: persistent context markers","description":"Add ability to pin issues so they remain visible and are excluded from work-finding commands. Pinned issues serve as persistent context markers (handoffs, architectural notes, recovery instructions) that should not be claimed as work items.\n\nUse Cases:\n1. Handoff messages - Pin session handoffs so new agents always see them\n2. Architecture decisions - Pin ADRs or design notes for reference  \n3. Recovery context - Pin amnesia-cure notes that help agents orient\n\nCore commands: bd pin, bd unpin, bd list --pinned/--no-pinned","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-18T23:33:10.911092-08:00","updated_at":"2025-12-21T11:30:28.989696-08:00","closed_at":"2025-12-21T11:30:28.989696-08:00"}
 {"id":"bd-0vtq","title":"Investigate JSONL hash mismatch warnings (bd-160)","description":"During v0.39.1 release, saw repeated warnings:\n\nWARNING: JSONL file hash mismatch detected (bd-160)\n  This indicates JSONL and export_hashes are out of sync.\n  Clearing export_hashes to force full re-export.\n\nThis appeared multiple times during wisp close operations. Questions:\n1. What causes export_hashes to drift from actual JSONL content?\n2. Is this expected during wisp operations (since wisps do not export)?\n3. Should wisp operations skip the hash check entirely?\n4. Is there actual data integrity risk or just noise?\n\nThe warning references bd-160 - may need to check that issue for context.","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-27T22:51:25.448856-08:00","created_by":"beads/crew/emma","updated_at":"2025-12-27T23:22:09.589444-08:00","closed_at":"2025-12-27T23:22:09.589444-08:00"}
 {"id":"bd-0w5","title":"Fix update-hooks verification in version-bump.yaml","description":"The update-hooks task verification command at version-bump.yaml:358 always succeeds due to '|| echo ...' fallback. Remove the fallback so verification actually fails when hooks aren't installed.","status":"tombstone","priority":3,"issue_type":"bug","created_at":"2025-12-17T22:23:06.55467-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"}
@@ -31,7 +31,7 @@
 {"id":"bd-1dez.6","title":"bd mol publish: Push formula to GitHub repo","description":"Publish a formula to a GitHub repository for sharing.\n\n## Usage\n```bash\n# Create new repo and publish\nbd mol publish mol-my-workflow --repo github.com/myorg/mol-my-workflow\n\n# Update existing repo\nbd mol publish mol-my-workflow --repo github.com/myorg/mol-my-workflow --tag v1.1.0\n```\n\n## Implementation\n1. Export proto to formula.json (if not already a file)\n2. Validate formula structure\n3. Create GitHub repo if --create flag (uses `gh repo create`)\n4. Copy formula.json to repo\n5. Generate README.md from formula description\n6. Commit and push\n7. Create git tag if --tag specified\n8. Add mol-formula topic to repo\n\n## Flags\n- `--repo \u003curl\u003e` - Target GitHub repo (required)\n- `--tag \u003cversion\u003e` - Create version tag\n- `--create` - Create repo if doesn't exist\n- `--private` - Create as private repo\n\n## Workflow\n```bash\n# Full publish flow\nbd mol distill my-epic --name my-workflow\nbd mol promote bd-proto-xxx --as my-workflow\nbd mol publish mol-my-workflow --repo github.com/me/mol-my-workflow --create --tag v1.0.0\n```\n","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-25T12:06:41.419764-08:00","updated_at":"2025-12-25T21:53:13.421752-08:00","closed_at":"2025-12-25T21:53:13.421752-08:00","dependencies":[{"issue_id":"bd-1dez.6","depends_on_id":"bd-1dez","type":"parent-child","created_at":"2025-12-25T12:06:41.420209-08:00","created_by":"daemon"}]}
 {"id":"bd-1dez.7","title":"Formula versioning: Version field and git tag integration","description":"Add versioning support to formulas for tracking updates.\n\n## Formula Version Field\n```json\n{\n  \"formula\": \"mol-code-review\",\n  \"version\": \"1.2.0\",\n  \"min_bd_version\": \"0.25.0\",\n  ...\n}\n```\n\n## Version Semantics\n- Use semver: MAJOR.MINOR.PATCH\n- MAJOR: Breaking changes to step structure\n- MINOR: New optional steps or variables\n- PATCH: Documentation, bug fixes\n\n## Git Tag Integration\n- `bd mol install repo@v1.2.0` fetches that tag\n- `bd mol install repo` fetches latest tag (or main if no tags)\n- `bd mol publish --tag v1.2.0` creates tag\n\n## Proto Version Tracking\nLocal proto should store:\n```\nsource_repo: github.com/anthropics/mol-code-review\nsource_version: v1.2.0\ninstalled_at: 2025-12-25T12:00:00Z\n```\n\nThis enables `bd mol update` to check for newer versions.\n","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-25T12:06:42.674849-08:00","updated_at":"2025-12-25T19:43:22.501926-08:00","closed_at":"2025-12-25T19:43:22.501926-08:00","dependencies":[{"issue_id":"bd-1dez.7","depends_on_id":"bd-1dez","type":"parent-child","created_at":"2025-12-25T12:06:42.67694-08:00","created_by":"daemon"}]}
 {"id":"bd-1dez.8","title":"Installation tracking: .beads/installed.json","description":"Track installed formulas for update checking and provenance.\n\n## File Format\n```json\n{\n  \"mol-code-review\": {\n    \"source\": \"github.com/anthropics/mol-code-review\",\n    \"version\": \"v1.2.0\",\n    \"installed_at\": \"2025-12-25T12:00:00Z\",\n    \"formula_hash\": \"abc123...\"\n  },\n  \"mol-polecat-work\": {\n    \"source\": \"local\",\n    \"version\": \"1\",\n    \"installed_at\": \"2025-12-24T10:00:00Z\"\n  }\n}\n```\n\n## Commands That Update This\n- `bd mol install` - Adds entry\n- `bd mol update` - Updates version/timestamp\n- `bd cook` - Adds entry with source:local\n- `bd mol uninstall` - Removes entry (new command)\n\n## Usage\n```bash\nbd mol list --installed    # Shows installed with source/version\nbd mol outdated            # Shows formulas with available updates\n```\n\n## Sync Behavior\n- installed.json is gitignored (local state)\n- Only formulas/ directory is synced\n- Each clone tracks its own installations\n","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-25T12:06:43.934727-08:00","updated_at":"2025-12-25T19:38:04.14827-08:00","closed_at":"2025-12-25T19:38:04.14827-08:00","dependencies":[{"issue_id":"bd-1dez.8","depends_on_id":"bd-1dez","type":"parent-child","created_at":"2025-12-25T12:06:43.937653-08:00","created_by":"daemon"}]}
-{"id":"bd-1pr6","title":"Time-dependent worktree detection tests may be flaky","status":"hooked","priority":3,"issue_type":"task","created_at":"2025-12-26T01:21:22.065353-08:00","updated_at":"2025-12-30T15:44:43.360441-08:00"}
+{"id":"bd-1pr6","title":"Time-dependent worktree detection tests may be flaky","status":"hooked","priority":3,"issue_type":"task","created_at":"2025-12-26T01:21:22.065353-08:00","updated_at":"2025-12-30T15:55:53.177247-08:00"}
 {"id":"bd-1ri4","title":"Test prefix bd-","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T14:24:41.240483-08:00","created_by":"stevey","updated_at":"2025-12-27T14:24:50.419881-08:00","deleted_at":"2025-12-27T14:24:50.419881-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
 {"id":"bd-1slh","title":"Investigate charmbracelet-based TUI for beads","description":"Now that we've merged the create-form command (PR #603) which uses charmbracelet/huh, investigate whether beads should have a more comprehensive TUI.\n\nConsiderations:\n- Should this be in core or a separate binary (bd-tui)?\n- What functionality would benefit from a TUI? (list view, issue details, search, bulk operations)\n- Plugin/extension architecture vs build tags vs separate binary\n- Dependency cost vs user experience tradeoff\n- Target audience: humans who want interactive workflows vs CLI/scripting users\n\nRelated: PR #603 added charmbracelet/huh dependency for create-form command.","notes":"Foundation is in place (lipgloss, huh), but not a priority right now","status":"deferred","priority":3,"issue_type":"feature","created_at":"2025-12-17T14:20:51.503563-08:00","updated_at":"2025-12-20T23:31:34.354023-08:00"}
 {"id":"bd-1tkd","title":"Code smell: ComputeContentHash() is 100+ lines of repetitive code","description":"attached_args: Refactor ComputeContentHash repetitive code\n\nThe ComputeContentHash() method in internal/types/types.go (lines 87-190) is over 100 lines of repetitive code:\n\n```go\nh.Write([]byte(i.Title))\nh.Write([]byte{0}) // separator\nh.Write([]byte(i.Description))\nh.Write([]byte{0})\nh.Write([]byte(i.Design))\n// ... repeated 40+ times\n```\n\nConsider:\n1. Using reflection to iterate over struct fields tagged for hashing\n2. Creating a helper function that takes field name and value\n3. Using a slice of fields to hash and iterating over it\n4. At minimum, extracting the repetitive pattern into a helper\n\nLocation: internal/types/types.go:87-190","status":"closed","priority":3,"issue_type":"chore","created_at":"2025-12-28T15:31:55.514941-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-28T16:41:13.031194-08:00","closed_at":"2025-12-28T16:41:13.031194-08:00","dependencies":[{"issue_id":"bd-1tkd","depends_on_id":"bd-784c","type":"parent-child","created_at":"2025-12-28T15:38:04.204723-08:00","created_by":"daemon"}]}
@@ -46,7 +46,7 @@
 {"id":"bd-28sq.4","title":"Fix JSON errors in comments.go","description":"Replace direct stderr writes with FatalErrorRespectJSON() in comments.go.\n\nCommands affected:\n- commentsCmd (list)\n- commentsAddCmd","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-25T13:32:09.696723-08:00","updated_at":"2025-12-25T13:54:19.640013-08:00","closed_at":"2025-12-25T13:54:19.640013-08:00","dependencies":[{"issue_id":"bd-28sq.4","depends_on_id":"bd-28sq","type":"parent-child","created_at":"2025-12-25T13:32:09.698366-08:00","created_by":"daemon"}]}
 {"id":"bd-28sq.5","title":"Fix JSON errors in epic.go","description":"Replace direct stderr writes with FatalErrorRespectJSON() in epic.go.\n\nCommands affected:\n- epicStatusCmd\n- epicCloseEligibleCmd","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-25T13:32:11.12219-08:00","updated_at":"2025-12-25T13:55:39.738404-08:00","closed_at":"2025-12-25T13:55:39.738404-08:00","dependencies":[{"issue_id":"bd-28sq.5","depends_on_id":"bd-28sq","type":"parent-child","created_at":"2025-12-25T13:32:11.124147-08:00","created_by":"daemon"}]}
 {"id":"bd-29fb","title":"Implement bd close --continue flag","description":"Auto-advance to next step in molecule when closing an issue. Referenced by gt-um6q, gt-lz13. Needed for molecule navigation workflow.","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-12-23T00:17:55.032875-08:00","updated_at":"2025-12-23T01:26:47.255313-08:00","closed_at":"2025-12-23T01:26:47.255313-08:00"}
-{"id":"bd-2dwo","title":"Remove deprecated daemon logger function","description":"In cmd/bd/daemon_logger.go:131, there's a TODO to remove a deprecated function once all callers are updated to use the new signature. Need to audit callers and clean up.\n\nFile: cmd/bd/daemon_logger.go:131","status":"closed","priority":4,"issue_type":"chore","created_at":"2025-12-28T16:32:39.513622-08:00","created_by":"stevey","updated_at":"2025-12-30T15:44:43.365401-08:00","closed_at":"2025-12-30T00:28:06.54315-08:00","close_reason":"Merged via refinery"}
+{"id":"bd-2dwo","title":"Remove deprecated daemon logger function","description":"In cmd/bd/daemon_logger.go:131, there's a TODO to remove a deprecated function once all callers are updated to use the new signature. Need to audit callers and clean up.\n\nFile: cmd/bd/daemon_logger.go:131","status":"closed","priority":4,"issue_type":"chore","created_at":"2025-12-28T16:32:39.513622-08:00","created_by":"stevey","updated_at":"2025-12-30T15:55:53.178191-08:00","closed_at":"2025-12-30T00:28:06.54315-08:00"}
 {"id":"bd-2ep8","title":"Update CHANGELOG.md with release notes","description":"Add meaningful release notes to CHANGELOG.md describing what changed in 0.30.7","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649053-08:00","updated_at":"2025-12-19T22:57:31.69559-08:00","closed_at":"2025-12-19T22:57:31.69559-08:00","dependencies":[{"issue_id":"bd-2ep8","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.650816-08:00","created_by":"stevey"},{"issue_id":"bd-2ep8","depends_on_id":"bd-rupw","type":"blocks","created_at":"2025-12-19T22:56:48.651136-08:00","created_by":"stevey"}]}
 {"id":"bd-2fs7","title":"Move pour/ephemeral under bd mol subcommand","description":"For consistency, bd pour and bd ephemeral should become bd mol pour and bd mol ephemeral:\n\nCurrent:\n  bd mol list                  # Available protos\n  bd mol show \u003cid\u003e             # Proto details\n  bd pour \u003cproto\u003e              # Create mol ← sticks out\n  bd ephemeral \u003cproto\u003e         # Create ephemeral ← sticks out  \n  bd mol bond \u003cproto\u003e \u003cparent\u003e # Attach to existing mol\n  bd mol squash \u003cid\u003e           # Condense to digest\n  bd mol burn \u003cid\u003e             # Discard\n\nProposed:\n  bd mol list\n  bd mol show \u003cid\u003e\n  bd mol pour \u003cproto\u003e          # Moved under mol\n  bd mol ephemeral \u003cproto\u003e     # Moved under mol\n  bd mol bond \u003cproto\u003e \u003cparent\u003e\n  bd mol squash \u003cid\u003e\n  bd mol burn \u003cid\u003e\n\nAll molecule operations should be under bd mol for discoverability and consistency.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-26T23:36:23.945902-08:00","created_by":"stevey","updated_at":"2025-12-26T23:41:01.096333-08:00","closed_at":"2025-12-26T23:41:01.096333-08:00"}
 {"id":"bd-2l03","title":"Implement await type handlers (gh:run, gh:pr, timer, human, mail)","description":"Implement condition checking for each await type.\n\n## Handlers Needed\n- gh:run:\u003cid\u003e - Check GitHub Actions run status via gh CLI\n- gh:pr:\u003cid\u003e - Check PR merged/closed status via gh CLI  \n- timer:\u003cduration\u003e - Simple elapsed time check\n- human:\u003cprompt\u003e - Check for human approval (via mail?)\n- mail:\u003cpattern\u003e - Check for mail matching pattern\n\n## Implementation Location\nThis is Deacon logic, so likely in Gas Town (gt) not beads.\n\n## Interface\n```go\ntype AwaitHandler interface {\n    Check(awaitID string) (completed bool, result string, err error)\n}\n```","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T11:44:38.492837-08:00","updated_at":"2025-12-23T12:19:44.283318-08:00","closed_at":"2025-12-23T12:19:44.283318-08:00","dependencies":[{"issue_id":"bd-2l03","depends_on_id":"bd-udsi","type":"parent-child","created_at":"2025-12-23T11:44:52.990746-08:00","created_by":"daemon"},{"issue_id":"bd-2l03","depends_on_id":"bd-is6m","type":"blocks","created_at":"2025-12-23T11:44:56.510792-08:00","created_by":"daemon"}]}
@@ -70,7 +70,7 @@
 {"id":"bd-2wh","title":"Test pinned for stats","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-18T21:47:09.334108-08:00","updated_at":"2025-12-18T21:47:25.17917-08:00","deleted_at":"2025-12-18T21:47:25.17917-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
 {"id":"bd-2wm2","title":"bd repair: Check comments and events tables for orphans","description":"bd repair currently checks dependencies and labels tables, but the schema also has comments and events tables with issue_id foreign keys that could be orphaned.\n\nAdd orphan detection and cleanup for:\n- comments table (issue_id not in issues)\n- events table (issue_id not in issues)","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-29T12:48:11.563302-08:00","created_by":"stevey","updated_at":"2025-12-29T12:57:43.745176-08:00","closed_at":"2025-12-29T12:57:43.745176-08:00","close_reason":"Implemented in repair.go: added orphan detection for comments/events tables and --json output flag"}
 {"id":"bd-313v","title":"rpc: Rich mutation events not emitted","description":"The activity command (activity.go) references rich mutation event types (MutationBonded, MutationSquashed, MutationBurned, MutationStatus) that include metadata like OldStatus, NewStatus, ParentID, and StepCount.\n\nHowever, the emitMutation() function in server_core.go:141 only accepts (eventType, issueID) and only populates Type, IssueID, and Timestamp. The additional metadata fields are never set.\n\nNeed to either:\n1. Add an emitRichMutation() function that accepts the additional metadata\n2. Update call sites (close, bond, squash, burn operations) to emit rich events\n\nWithout this fix, the activity feed will never show:\n- Status transitions (in_progress -\u003e closed)\n- Bonded events with step counts\n- Parent molecule relationships\n\nDiscovered during code review of bd-xo1o implementation.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-23T04:06:17.39523-08:00","updated_at":"2025-12-23T04:13:19.205249-08:00","closed_at":"2025-12-23T04:13:19.205249-08:00"}
-{"id":"bd-31ae","title":"Document labels-as-state pattern for operational state","description":"Labels on role beads cache current operational state for fast queries.\n\nConvention: \u003cdimension\u003e:\u003cvalue\u003e\n- patrol:muted / patrol:active\n- mode:degraded / mode:normal\n- status:idle / status:working\n\nPattern:\n1. Create event bead (full context, immutable history)\n2. Update role bead labels (current state cache)\n\nNo schema change needed - labels already exist. This task:\n- Document the convention in beads docs\n- Consider helper: bd state \u003crole\u003e \u003cdimension\u003e (queries label)\n- Consider helper: bd set-state \u003crole\u003e \u003cdimension\u003e=\u003cvalue\u003e (creates event + updates label)\n\nEvents are source of truth. Labels are cache.","status":"closed","priority":2,"issue_type":"task","assignee":"beads/polecats/jasper","created_at":"2025-12-30T15:15:46.697971-08:00","created_by":"gastown/crew/max","updated_at":"2025-12-30T15:51:34.364561-08:00","closed_at":"2025-12-30T15:51:34.364561-08:00","close_reason":"Added 'Labels as State Cache' section to docs/LABELS.md with convention, pattern, examples, and best practices"}
+{"id":"bd-31ae","title":"Document labels-as-state pattern for operational state","description":"Labels on role beads cache current operational state for fast queries.\n\nConvention: \u003cdimension\u003e:\u003cvalue\u003e\n- patrol:muted / patrol:active\n- mode:degraded / mode:normal\n- status:idle / status:working\n\nPattern:\n1. Create event bead (full context, immutable history)\n2. Update role bead labels (current state cache)\n\nNo schema change needed - labels already exist. This task:\n- Document the convention in beads docs\n- Consider helper: bd state \u003crole\u003e \u003cdimension\u003e (queries label)\n- Consider helper: bd set-state \u003crole\u003e \u003cdimension\u003e=\u003cvalue\u003e (creates event + updates label)\n\nEvents are source of truth. Labels are cache.","status":"closed","priority":2,"issue_type":"task","assignee":"beads/polecats/jasper","created_at":"2025-12-30T15:15:46.697971-08:00","created_by":"gastown/crew/max","updated_at":"2025-12-30T15:59:55.071493-08:00","closed_at":"2025-12-30T15:51:34.364561-08:00","close_reason":"Documentation added to docs/LABELS.md. Created bd-7l67 for the helper commands."}
 {"id":"bd-34q1","title":"Give --all flag actual meaning in bd list","description":"The --all flag exists but is currently a no-op ('flag provided for CLI familiarity'). Once we change the default to non-closed, --all should override to show all issues including closed.\n\nThis provides backwards compatibility for scripts that depend on seeing all issues.","notes":"## Implementation Plan\n\n### Code Changes (cmd/bd/list.go)\n\n1. **Update --all flag handling** (~line 889):\n```go\n// Currently: listCmd.Flags().Bool(\"all\", false, \"Show all issues (default behavior; flag provided for CLI familiarity)\")\n// Change to:\nlistCmd.Flags().Bool(\"all\", false, \"Show all issues including closed (overrides default filter)\")\n```\n\n2. **Check for --all in Run function** (before applying default filter):\n```go\nallFlag, _ := cmd.Flags().GetBool(\"all\")\nif status == \"\" \u0026\u0026 !allFlag {\n    // Apply default non-closed filter\n    filter.ExcludeStatus = []types.Status{\"closed\"}\n}\n// If --all is set, no ExcludeStatus applied = show everything\n```\n\n### Testing\n- `bd list --all` shows all issues including closed\n- `bd list` shows non-closed (from bd-mypl)\n- `bd list --all --status=open` - --all is ignored when explicit status given\n\n### Documentation\n- Update --help text\n- Add to migration guide: \"Use --all for previous default behavior\"","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-29T15:25:07.522236-08:00","created_by":"stevey","updated_at":"2025-12-29T17:53:30.241263-08:00","closed_at":"2025-12-29T17:53:30.241263-08:00","close_reason":"Implemented in single commit","labels":["gh:788"],"dependencies":[{"issue_id":"bd-34q1","depends_on_id":"bd-mypl","type":"blocks","created_at":"2025-12-29T15:25:20.671576-08:00","created_by":"daemon"}]}
 {"id":"bd-379","title":"Implement `bd setup cursor` for Cursor IDE integration","description":"Create a `bd setup cursor` command that integrates Beads workflow into Cursor IDE via .cursorrules file. Unlike Claude Code (which has hooks), Cursor uses a static rules file to provide context to its AI.","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-11-11T23:32:22.170083-08:00","updated_at":"2025-12-25T22:26:54.445182-08:00","closed_at":"2025-12-25T22:26:54.445182-08:00"}
 {"id":"bd-3852","title":"Add orphan detection migration","description":"Create migration to detect orphaned children in existing databases. Query: SELECT id FROM issues WHERE id LIKE '%.%' AND substr(id, 1, instr(id || '.', '.') - 1) NOT IN (SELECT id FROM issues). Log results, let user decide action (delete orphans or convert to top-level).","status":"closed","priority":2,"issue_type":"task","created_at":"2025-11-04T12:32:30.727044-08:00","updated_at":"2025-12-21T21:00:05.041582-08:00","closed_at":"2025-12-21T21:00:05.041582-08:00"}
@@ -86,7 +86,7 @@
 {"id":"bd-3zm7","title":"bd mol advance: Step through molecule execution","description":"Implement bd mol advance for stepping through molecules.\n\n## Command\n\n```bash\nbd mol advance \u003cmol-id\u003e\n```\n\n## Behavior\n\n1. Load molecule state from .beads/molecules/\u003cmol-id\u003e.state.yaml\n2. Find current step\n3. Mark current step completed\n4. Find next available step (respecting needs/deps)\n5. Update state file\n6. Output next step info (or COMPLETE if done)\n\n## Step State Machine\n\n```\npending → in_progress → completed\n```\n\nWhen advancing:\n- Current step: in_progress → completed\n- Next step: pending → in_progress\n\n## Output\n\n```bash\n$ bd mol advance mol-deacon-patrol\n✓ Step inbox-check completed\n→ Next step: spawn-work\n\nTitle: Spawn polecat for ready work\nDescription: ...\n```\n\nOr if complete:\n```bash\n$ bd mol advance mol-deacon-patrol\n✓ Step self-inspect completed\n✓ Molecule COMPLETE\n\nRun bd mol reset to loop, or gt handoff to cycle.\n```\n\n## Files\n\n- cmd/bd/mol_advance.go\n- internal/mol/state.go","status":"closed","priority":0,"issue_type":"task","created_at":"2025-12-24T15:53:31.832867-08:00","updated_at":"2025-12-24T16:53:13.244739-08:00","closed_at":"2025-12-24T16:53:13.244739-08:00","dependencies":[{"issue_id":"bd-3zm7","depends_on_id":"bd-hulf","type":"blocks","created_at":"2025-12-24T15:53:49.233523-08:00","created_by":"daemon"}]}
 {"id":"bd-3zzh","title":"Merge: bd-tvu3","description":"branch: polecat/Beader\ntarget: main\nsource_issue: bd-tvu3\nrig: beads","status":"closed","priority":1,"issue_type":"merge-request","created_at":"2025-12-23T13:36:55.016496-08:00","updated_at":"2025-12-23T19:12:08.347363-08:00","closed_at":"2025-12-23T19:12:08.347363-08:00"}
 {"id":"bd-401h","title":"Work on beads-7jl: Fix Windows installer file locking iss...","description":"Work on beads-7jl: Fix Windows installer file locking issue (GH#652). Close file handle before extraction in postinstall.js. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:57.873767-08:00","updated_at":"2025-12-19T23:20:05.747664-08:00","closed_at":"2025-12-19T23:20:05.747664-08:00"}
-{"id":"bd-411u","title":"Document BEADS_DIR pattern for multi-agent workspaces (Gas Town)","description":"Gas Town and similar multi-agent systems need to configure separate beads databases per workspace/rig, distinct from any project-level beads.\n\n## Use Case\n\nIn Gas Town:\n- Each 'rig' (managed project) has multiple agents (polecats, refinery, witness)\n- All agents in a rig should share a single beads database at the rig level\n- This should be separate from any .beads/ the project itself uses\n- The BEADS_DIR env var enables this\n\n## Documentation Needed\n\n1. Add a section to docs explaining BEADS_DIR for multi-agent setups\n2. Example: setting BEADS_DIR in agent startup scripts/hooks\n3. Clarify interaction with project-level .beads/ (BEADS_DIR takes precedence)\n\n## Current Support\n\nAlready implemented in internal/beads/beads.go:FindDatabasePath():\n- BEADS_DIR env var is checked first (preferred)\n- BEADS_DB env var still supported (deprecated)\n- Falls back to .beads/ search in tree\n\nJust needs documentation for the multi-agent workspace pattern.","status":"hooked","priority":3,"issue_type":"task","created_at":"2025-12-15T22:08:22.158027-08:00","updated_at":"2025-12-30T15:44:43.351778-08:00"}
+{"id":"bd-411u","title":"Document BEADS_DIR pattern for multi-agent workspaces (Gas Town)","description":"Gas Town and similar multi-agent systems need to configure separate beads databases per workspace/rig, distinct from any project-level beads.\n\n## Use Case\n\nIn Gas Town:\n- Each 'rig' (managed project) has multiple agents (polecats, refinery, witness)\n- All agents in a rig should share a single beads database at the rig level\n- This should be separate from any .beads/ the project itself uses\n- The BEADS_DIR env var enables this\n\n## Documentation Needed\n\n1. Add a section to docs explaining BEADS_DIR for multi-agent setups\n2. Example: setting BEADS_DIR in agent startup scripts/hooks\n3. Clarify interaction with project-level .beads/ (BEADS_DIR takes precedence)\n\n## Current Support\n\nAlready implemented in internal/beads/beads.go:FindDatabasePath():\n- BEADS_DIR env var is checked first (preferred)\n- BEADS_DB env var still supported (deprecated)\n- Falls back to .beads/ search in tree\n\nJust needs documentation for the multi-agent workspace pattern.","status":"hooked","priority":3,"issue_type":"task","created_at":"2025-12-15T22:08:22.158027-08:00","updated_at":"2025-12-30T15:55:53.178999-08:00"}
 {"id":"bd-43xj","title":"Add thread-safety warning to git.ResetCaches() doc comment","description":"Code review finding from bd-7di fix.\n\nResetCaches() reassigns sync.Once values which is not thread-safe. While this is only used in tests (which are single-threaded), the function is exported and could be misused.\n\nAdd a warning comment:\n```go\n// ResetCaches resets all cached git information.\n// WARNING: Not thread-safe. Only call from single-threaded test contexts.\n```\n\nFile: internal/git/gitdir.go","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-25T22:08:51.125399-08:00","updated_at":"2025-12-25T22:43:54.508097-08:00","closed_at":"2025-12-25T22:43:54.508097-08:00"}
 {"id":"bd-45td","title":"Refactor: Extract shared child-fetching logic in swarm.go","description":"Lines 162-181 (analyzeEpicForSwarm) and 630-649 (getSwarmStatus) have identical logic for fetching epic children via parent-child dependencies.\n\nExtract to a shared helper function like:\n\n```go\nfunc getEpicChildren(ctx context.Context, s StorageInterface, epicID string) ([]*types.Issue, error)\n```\n\nThis will reduce duplication and ensure consistent behavior between validate/status/create commands.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-28T21:37:54.16697-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-28T21:54:58.827802-08:00","closed_at":"2025-12-28T21:54:58.827802-08:00","dependencies":[{"issue_id":"bd-45td","depends_on_id":"bd-2ubv","type":"parent-child","created_at":"2025-12-28T21:38:44.705879-08:00","created_by":"daemon"}]}
 {"id":"bd-47qx","title":"bd cook: Proto ID prefix should match project prefix","description":"When `bd cook` creates a proto, it uses the formula name as the proto ID:\n\n```yaml\nformula: mol-deacon-patrol\n```\n\nCreates proto with ID `mol-deacon-patrol`.\n\n## Problem\n\nIf the project uses a different prefix (e.g., `gt-`), the cooked protos have \na different prefix (`mol-`), causing:\n\n1. `bd sync` import warnings about prefix mismatch\n2. Mixed prefix lists in `bd mol list`\n3. Confusion about naming conventions\n\n## Options\n\n1. **Use project prefix**: Cook as `gt-mol-deacon-patrol`\n2. **Allow mol- as special prefix**: Recognize mol-* as valid for protos\n3. **Make prefix configurable**: `bd cook --prefix gt-`\n4. **Keep current behavior**: Document that formulas use their own namespace\n\n## Current Workaround\n\nThe prefix mismatch warning can be ignored, but `bd sync` fails the import step.\n\n## Related\n\ngt-i6k1: Duplicate proto cleanup","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-24T13:50:24.631336-08:00","updated_at":"2025-12-24T13:59:09.933374-08:00","closed_at":"2025-12-24T13:59:09.933374-08:00"}
@@ -96,7 +96,7 @@
 {"id":"bd-4bsb","title":"Code review findings: mol squash deletion bypasses tombstones","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-21T13:57:14.154316-08:00","updated_at":"2025-12-21T18:01:06.811216-08:00","closed_at":"2025-12-21T18:01:06.811216-08:00","dependencies":[{"issue_id":"bd-4bsb","depends_on_id":"bd-2vh3.3","type":"discovered-from","created_at":"2025-12-21T13:57:14.155488-08:00","created_by":"daemon"}]}
 {"id":"bd-4d9d","title":"Test epic for duplicate swarm","status":"closed","priority":2,"issue_type":"epic","created_at":"2025-12-28T21:56:57.256997-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-29T13:40:29.716788-08:00","closed_at":"2025-12-29T13:40:29.716788-08:00","close_reason":"Stale/spurious - test artifacts, merged PRs, or auto-close candidates"}
 {"id":"bd-4ec8","title":"Widespread double JSON encoding bug in daemon mode RPC calls","description":"Multiple CLI commands had the same double JSON encoding bug found in bd-1048. All commands that called ResolveID via RPC used string(resp.Data) instead of properly unmarshaling the JSON response. This caused IDs to retain JSON quotes (\"bd-1048\" instead of bd-1048), which then got double-encoded when passed to subsequent RPC calls.\n\nAffected commands:\n- bd show (3 instances)\n- bd dep add/remove/tree (5 instances)\n- bd label add/remove/list (3 instances)\n- bd reopen (1 instance)\n\nRoot cause: resp.Data is json.RawMessage (already JSON-encoded), so string() conversion preserves quotes.\n\nFix: Replace all string(resp.Data) with json.Unmarshal(resp.Data, \u0026id) for proper deserialization.\n\nAll commands now tested and working correctly with daemon mode.","status":"tombstone","priority":0,"issue_type":"bug","created_at":"2025-11-02T22:33:01.632691-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"}
-{"id":"bd-4hn","title":"wish: list \u0026 ready show issues as hierarchy tree","description":"`bd ready` and `bd list` just show a flat list, and it's up to the reader to parse which ones are dependent or sub-issues of others. It would be much easier to understand if they were shown in a tree format","status":"hooked","priority":3,"issue_type":"task","created_at":"2025-12-08T06:38:24.016316945-07:00","updated_at":"2025-12-30T15:44:43.343883-08:00"}
+{"id":"bd-4hn","title":"wish: list \u0026 ready show issues as hierarchy tree","description":"`bd ready` and `bd list` just show a flat list, and it's up to the reader to parse which ones are dependent or sub-issues of others. It would be much easier to understand if they were shown in a tree format","status":"hooked","priority":3,"issue_type":"task","created_at":"2025-12-08T06:38:24.016316945-07:00","updated_at":"2025-12-30T15:55:53.179815-08:00"}
 {"id":"bd-4lm3","title":"Correction: Pinned field already in v0.31.0","description":"Quick correction - the Pinned field is already in the current bd v0.31.0:\n\n```go\n// In beads internal/types/types.go\nPinned bool `json:\"pinned,omitempty\"`\n```\n\nSo you just need to:\n1. Add `Pinned bool `json:\"pinned,omitempty\"`` to BeadsMessage in types.go\n2. Sort pinned messages first in listBeads() after fetching\n\nNo migration needed - the field is already there.\n\n-- Mayor","status":"closed","priority":2,"issue_type":"message","created_at":"2025-12-20T17:52:27.321458-08:00","updated_at":"2025-12-21T17:52:18.617995-08:00","closed_at":"2025-12-21T17:52:18.617995-08:00","labels":["from:beads-crew-dave","thread:thread-4dd70157dbc1"]}
 {"id":"bd-4nqq","title":"Remove dead test code in info_test.go","description":"Code health review found cmd/bd/info_test.go has two tests permanently skipped:\n\n- TestInfoCommand\n- TestInfoCommandNoDaemon\n\nBoth skip with: 'Manual test - bd info command is working, see manual testing'\n\nThese are essentially dead code. Either automate them or remove them entirely.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:27.554019-08:00","updated_at":"2025-12-22T21:01:24.524963-08:00","closed_at":"2025-12-22T21:01:24.524963-08:00"}
 {"id":"bd-4nzq","title":"bd create --rig flag for cross-rig issue filing","description":"## Problem\n\nTo create an issue in a different rig, you must cd to that rig's directory. This is clunky when coordinating across rigs.\n\n## Proposed Solution\n\nAdd a --rig flag to bd create that leverages existing routes.jsonl:\n\n```bash\n# From anywhere in town\nbd create --rig beads --title=\"bug report\" --type=bug\n\n# Equivalent to:\ncd ~/gt/beads/mayor/rig \u0026\u0026 bd create --title=\"...\"\n```\n\n## How it works\n\n1. Parse --rig flag (rig name, not prefix)\n2. Look up rig in routes.jsonl to find beads location\n3. Determine prefix from rig config\n4. Create issue in that location with auto-generated ID\n\n## Why elegant\n\n- Leverages existing routing infrastructure\n- Rig names are human-memorable (not cryptic prefixes)\n- Works from anywhere in town\n- Prefix auto-determined from rig config\n- Reads naturally: \"create in beads\"\n\n## Alternative\n\nAlso consider --prefix for power users who know prefixes:\n```bash\nbd create --prefix bd \"Title here\"\n```","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-27T00:39:02.233664-08:00","created_by":"mayor","updated_at":"2025-12-27T00:44:04.079867-08:00","closed_at":"2025-12-27T00:44:04.079867-08:00"}
@@ -107,7 +107,7 @@
 {"id":"bd-4qfb","title":"Improve bd doctor output formatting for better readability","description":"Improve bd doctor output formatting for better readability.\n\n## Current State\nDoctor output is a wall of text with:\n- All checks shown (even passing ones)\n- No visual hierarchy\n- Hard to spot failures in long output\n\n## Target Output\n\n```\n$ bd doctor\n\nbd doctor v0.35.0\n\nSummary: 24 checks passed, 1 warning, 0 errors\n\n─────────────────────────────────────────────────\n⚠ Warnings (1)\n─────────────────────────────────────────────────\n\n[hooks] Git hooks outdated\n  Current version: 0.34.0\n  Latest version: 0.35.0\n  Fix: bd hooks install\n\n─────────────────────────────────────────────────\n✓ Passed (24)  [use --verbose to show details]\n─────────────────────────────────────────────────\n```\n\nWith --verbose:\n```\n$ bd doctor --verbose\n\nbd doctor v0.35.0\n\nSummary: 24 checks passed, 1 warning, 0 errors\n\n─────────────────────────────────────────────────\n⚠ Warnings (1)\n─────────────────────────────────────────────────\n\n[hooks] Git hooks outdated\n  ...\n\n─────────────────────────────────────────────────\n✓ Passed (24)\n─────────────────────────────────────────────────\n\n  Database\n    ✓ Database exists\n    ✓ Database readable\n    ✓ Schema up to date\n    \n  Git Hooks\n    ✓ Pre-commit hook installed\n    ✓ Post-merge hook installed\n    ⚠ Hooks version mismatch (see above)\n    \n  Sync\n    ✓ Sync branch configured\n    ✓ Remote accessible\n    ...\n```\n\n## Implementation\n\n### 1. Add check categories (cmd/bd/doctor/categories.go)\n\n```go\ntype Category string\n\nconst (\n    CatDatabase  Category = \"Database\"\n    CatHooks     Category = \"Git Hooks\"\n    CatSync      Category = \"Sync\"\n    CatDaemon    Category = \"Daemon\"\n    CatConfig    Category = \"Configuration\"\n    CatIntegrity Category = \"Data Integrity\"\n)\n\n// Assign categories to checks\nvar checkCategories = map[string]Category{\n    \"database-exists\":     CatDatabase,\n    \"database-readable\":   CatDatabase,\n    \"schema-version\":      CatDatabase,\n    \"pre-commit-hook\":     CatHooks,\n    \"post-merge-hook\":     CatHooks,\n    \"hooks-version\":       CatHooks,\n    \"sync-branch\":         CatSync,\n    \"remote-access\":       CatSync,\n    // ... etc\n}\n```\n\n### 2. Add --verbose flag\n\n```go\n// In cmd/bd/doctor.go init()\ndoctorCmd.Flags().BoolP(\"verbose\", \"v\", false, \"Show all checks including passed\")\n```\n\n### 3. Create formatter (cmd/bd/doctor/format.go)\n\n```go\ntype Formatter struct {\n    verbose bool\n    noColor bool\n}\n\nfunc (f *Formatter) Format(results []CheckResult) string {\n    var buf strings.Builder\n    \n    // Count by status\n    passed, warnings, errors := countByStatus(results)\n    \n    // Header\n    buf.WriteString(fmt.Sprintf(\"bd doctor v%s\\n\\n\", version.Version))\n    buf.WriteString(fmt.Sprintf(\"Summary: %d passed, %d warnings, %d errors\\n\\n\", \n        passed, warnings, errors))\n    \n    // Errors section (always show)\n    if errors \u003e 0 {\n        f.writeSection(\u0026buf, \"✗ Errors\", filterByStatus(results, StatusError))\n    }\n    \n    // Warnings section (always show)\n    if warnings \u003e 0 {\n        f.writeSection(\u0026buf, \"⚠ Warnings\", filterByStatus(results, StatusWarning))\n    }\n    \n    // Passed section (only with --verbose)\n    if f.verbose \u0026\u0026 passed \u003e 0 {\n        f.writePassedSection(\u0026buf, filterByStatus(results, StatusPassed))\n    } else if passed \u003e 0 {\n        buf.WriteString(fmt.Sprintf(\"✓ Passed (%d)  [use --verbose to show details]\\n\", passed))\n    }\n    \n    return buf.String()\n}\n\nfunc (f *Formatter) writeSection(buf *strings.Builder, title string, results []CheckResult) {\n    buf.WriteString(\"─────────────────────────────────────────────────\\n\")\n    buf.WriteString(title + \"\\n\")\n    buf.WriteString(\"─────────────────────────────────────────────────\\n\\n\")\n    \n    for _, r := range results {\n        buf.WriteString(fmt.Sprintf(\"[%s] %s\\n\", r.CheckName, r.Message))\n        if r.Details != \"\" {\n            buf.WriteString(fmt.Sprintf(\"  %s\\n\", r.Details))\n        }\n        if r.Fix != \"\" {\n            buf.WriteString(fmt.Sprintf(\"  Fix: %s\\n\", r.Fix))\n        }\n        buf.WriteString(\"\\n\")\n    }\n}\n\nfunc (f *Formatter) writePassedSection(buf *strings.Builder, results []CheckResult) {\n    // Group by category\n    byCategory := groupByCategory(results)\n    \n    buf.WriteString(\"─────────────────────────────────────────────────\\n\")\n    buf.WriteString(fmt.Sprintf(\"✓ Passed (%d)\\n\", len(results)))\n    buf.WriteString(\"─────────────────────────────────────────────────\\n\\n\")\n    \n    for _, cat := range categoryOrder {\n        if checks, ok := byCategory[cat]; ok {\n            buf.WriteString(fmt.Sprintf(\"  %s\\n\", cat))\n            for _, r := range checks {\n                buf.WriteString(fmt.Sprintf(\"    ✓ %s\\n\", r.Message))\n            }\n            buf.WriteString(\"\\n\")\n        }\n    }\n}\n```\n\n### 4. Update run function\n\n```go\nfunc runDoctor(cmd *cobra.Command, args []string) {\n    verbose, _ := cmd.Flags().GetBool(\"verbose\")\n    noColor, _ := cmd.Flags().GetBool(\"no-color\")\n    \n    results := runAllChecks()\n    \n    formatter := \u0026Formatter{verbose: verbose, noColor: noColor}\n    fmt.Print(formatter.Format(results))\n    \n    // Exit code based on results\n    if hasErrors(results) {\n        os.Exit(1)\n    }\n}\n```\n\n## Files to Modify\n\n1. **cmd/bd/doctor.go** - Add --verbose flag, update run function\n2. **cmd/bd/doctor/format.go** - New file for formatting logic\n3. **cmd/bd/doctor/categories.go** - New file for check categorization\n4. **cmd/bd/doctor/common.go** - Add Status field to CheckResult if missing\n\n## Testing\n\n```bash\n# Default output (concise)\nbd doctor\n\n# Verbose output\nbd doctor --verbose\n\n# JSON output (should still work)\nbd doctor --json\n```\n\n## Success Criteria\n- Summary line at top with counts\n- Only failures/warnings shown by default\n- --verbose shows grouped passed checks\n- Visual separators between sections\n- Exit code 1 if errors, 0 otherwise","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T09:29:27.557578+11:00","updated_at":"2025-12-23T13:37:18.48781-08:00","closed_at":"2025-12-23T13:37:18.48781-08:00","dependencies":[{"issue_id":"bd-4qfb","depends_on_id":"bd-iz5t","type":"parent-child","created_at":"2025-12-23T12:44:07.972517-08:00","created_by":"daemon"}]}
 {"id":"bd-4ri","title":"Fix TestFallbackToDirectModeEnablesFlush deadlock causing 10min test timeout","description":"## Problem\n\nTestFallbackToDirectModeEnablesFlush in direct_mode_test.go deadlocks for 9m59s before timing out, causing the entire test suite to take 10+ minutes instead of \u003c10 seconds.\n\n## Root Cause\n\nDatabase lock contention between test cleanup and flushToJSONL():\n- Test cleanup (line 36) tries to close DB via defer\n- flushToJSONL() (line 132) is still accessing DB\n- Results in deadlock: database/sql.(*DB).Close() waits for mutex while GetJSONLFileHash() holds it\n\n## Stack Trace Evidence\n\n```\ngoroutine 512 [sync.Mutex.Lock, 9 minutes]:\ndatabase/sql.(*DB).Close(0x14000643790)\n  .../database/sql/sql.go:927 +0x84\ngithub.com/steveyegge/beads/cmd/bd.TestFallbackToDirectModeEnablesFlush.func1()\n  .../direct_mode_test.go:36 +0xf4\n\nWhile goroutine running flushToJSONL() holds DB connection via GetJSONLFileHash()\n```\n\n## Impact\n\n- Test suite: 10+ minutes → should be \u003c10 seconds\n- ALL other tests pass in ~4 seconds\n- This ONE test accounts for 99.9% of test runtime\n\n## Related\n\nThis is the EXACT same issue documented in MAIN_TEST_REFACTOR_NOTES.md for why main_test.go refactoring was deferred - global state manipulation + DB cleanup = deadlock.\n\n## Fix Approaches\n\n1. **Add proper cleanup sequencing** - stop flush goroutines BEFORE closing DB\n2. **Use test-specific DB lifecycle** - ensure flush completes before cleanup\n3. **Mock the flush mechanism** - avoid real DB for testing this code path  \n4. **Add explicit timeout handling** - fail fast with clear error instead of hanging\n\n## Files\n\n- cmd/bd/direct_mode_test.go:36-132\n- cmd/bd/autoflush.go:353 (validateJSONLIntegrity)\n- cmd/bd/autoflush.go:508 (flushToJSONLWithState)\n\n## Acceptance\n\n- Test passes without timeout\n- Test suite completes in \u003c10 seconds\n- No deadlock between cleanup and flush operations","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-11-21T20:09:00.794372-05:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"}
 {"id":"bd-4sfl","title":"Merge: bd-14ie","description":"branch: polecat/toast\ntarget: main\nsource_issue: bd-14ie\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:23:37.360782-08:00","updated_at":"2025-12-20T23:17:26.997276-08:00","closed_at":"2025-12-20T23:17:26.997276-08:00"}
-{"id":"bd-4sxh","title":"Code smell: Issue struct still has ~100 fields - consider composition","description":"internal/types/types.go Issue struct (lines 14-100) still has approximately 100 fields across many categories despite prior cleanup:\n\n- Core identification (ID, ContentHash)\n- Content (Title, Description, Design)\n- Status \u0026 Workflow\n- Assignment, Timestamps\n- External integration\n- Compaction metadata\n- Relational data (Labels, Dependencies, Comments)\n- Tombstone, Messaging, Context markers\n- Bonding, HOP, Gate, Source tracing, Agent identity fields\n\n**Problem:**\n- Very large struct is difficult to understand\n- Hard to identify required vs optional fields\n- High change risk\n\n**Acceptance Criteria:**\n- [ ] Group related fields into embedded structs (IssueMetadata, IssueCompaction, IssueAgent, etc.)\n- [ ] Use composition instead of single flat struct\n- [ ] Maintain backward compatibility for serialization\n- [ ] Tests pass","status":"hooked","priority":3,"issue_type":"chore","created_at":"2025-12-28T19:00:00.560267-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-30T15:44:43.353922-08:00","close_reason":"Refactored Issue struct using composition: created 4 embedded structs (IssueCompaction, IssueTombstone, IssueGate, IssueAgent) to group ~19 specialized fields while keeping core fields flat for ergonomic struct literals. JSON serialization unchanged.","dependencies":[{"issue_id":"bd-4sxh","depends_on_id":"bd-ox1o","type":"blocks","created_at":"2025-12-28T19:00:23.780801-08:00","created_by":"daemon"}]}
+{"id":"bd-4sxh","title":"Code smell: Issue struct still has ~100 fields - consider composition","description":"internal/types/types.go Issue struct (lines 14-100) still has approximately 100 fields across many categories despite prior cleanup:\n\n- Core identification (ID, ContentHash)\n- Content (Title, Description, Design)\n- Status \u0026 Workflow\n- Assignment, Timestamps\n- External integration\n- Compaction metadata\n- Relational data (Labels, Dependencies, Comments)\n- Tombstone, Messaging, Context markers\n- Bonding, HOP, Gate, Source tracing, Agent identity fields\n\n**Problem:**\n- Very large struct is difficult to understand\n- Hard to identify required vs optional fields\n- High change risk\n\n**Acceptance Criteria:**\n- [ ] Group related fields into embedded structs (IssueMetadata, IssueCompaction, IssueAgent, etc.)\n- [ ] Use composition instead of single flat struct\n- [ ] Maintain backward compatibility for serialization\n- [ ] Tests pass","status":"hooked","priority":3,"issue_type":"chore","created_at":"2025-12-28T19:00:00.560267-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-30T15:55:53.180572-08:00","dependencies":[{"issue_id":"bd-4sxh","depends_on_id":"bd-ox1o","type":"blocks","created_at":"2025-12-28T19:00:23.780801-08:00","created_by":"daemon"}]}
 {"id":"bd-4uoc","title":"Code Review Followup Summary: PR #481 + PR #551","description":"## Merged PRs Summary\n\n### PR #551: Persist close_reason to issues table\n- ✅ Merged successfully\n- ✅ Bug fix: close_reason now persisted in database column (not just events table)\n- ✅ Comprehensive test coverage added\n- ✅ Handles reopen case (clearing close_reason)\n\n**Followup Issues Filed:**\n- bd-lxzx: Document close_reason in JSONL export format\n- bd-077e: Update CLI documentation for close_reason field\n\n---\n\n### PR #481: Context Engineering Optimizations (80-90% context reduction)\n- ✅ Merged successfully  \n- ✅ Lazy tool discovery: discover_tools() + get_tool_info()\n- ✅ Minimal issue models: IssueMinimal (~80% smaller than full Issue)\n- ✅ Result compaction: Auto-compacts results \u003e20 items\n- ✅ All 28 tests passing\n- ⚠️ Breaking change: ready() and list() return type changed\n\n**Followup Issues Filed:**\n- bd-b318: Add integration tests for CompactedResult\n- bd-4u2b: Make compaction settings configurable (THRESHOLD, PREVIEW_COUNT)\n- bd-2kf8: Document CompactedResult response format in CONTEXT_ENGINEERING.md\n- bd-pdr2: Document backwards compatibility considerations\n\n---\n\n## Overall Assessment\n\nBoth PRs are production-ready with solid implementations. All critical functionality works and tests pass. Followup issues focus on:\n1. Documentation improvements (5 issues)\n2. Integration test coverage (1 issue)\n3. Configuration flexibility (1 issue)\n4. Backwards compatibility guidance (1 issue)\n\nNo critical bugs or design issues found.\n\n## Review Completed By\nCode review process completed. Issues auto-created for tracking improvements.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:59.214886-08:00","updated_at":"2025-12-29T13:40:29.723233-08:00","closed_at":"2025-12-29T13:40:29.723233-08:00","close_reason":"Stale/spurious - test artifacts, merged PRs, or auto-close candidates","dependencies":[{"issue_id":"bd-4uoc","depends_on_id":"bd-otf4","type":"discovered-from","created_at":"2025-12-14T14:25:59.216884-08:00","created_by":"stevey"},{"issue_id":"bd-4uoc","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:59.217296-08:00","created_by":"stevey"}]}
 {"id":"bd-4y4g","title":"Bump version in all files","description":"Run ./scripts/bump-version.sh {{version}} to update 10 version files. Then run with --commit after info.go is updated.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:01.859728-08:00","updated_at":"2025-12-24T16:25:30.160776-08:00","dependencies":[{"issue_id":"bd-4y4g","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.623724-08:00","created_by":"daemon"},{"issue_id":"bd-4y4g","depends_on_id":"bd-8v2","type":"blocks","created_at":"2025-12-18T22:43:20.823329-08:00","created_by":"daemon"}],"deleted_at":"2025-12-24T16:25:30.160776-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
 {"id":"bd-5012","title":"Merge: ux-1766978911613","description":"branch: polecat/Nux-1766978911613\ntarget: main\nsource_issue: ux-1766978911613\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-28T19:35:42.938017-08:00","created_by":"beads/polecats/Nux","updated_at":"2025-12-29T13:40:29.719953-08:00","closed_at":"2025-12-29T13:40:29.719953-08:00","close_reason":"Stale/spurious - test artifacts, merged PRs, or auto-close candidates"}
@@ -143,7 +143,7 @@
 {"id":"bd-6s61","title":"Version Bump: {{version}}","description":"Release checklist for version {{version}}. This molecule ensures all release steps are completed properly.","status":"tombstone","priority":1,"issue_type":"epic","created_at":"2025-12-19T22:55:42.487701-08:00","updated_at":"2025-12-25T13:27:50.789625-08:00","labels":["molecule","template"],"deleted_at":"2025-12-24T16:25:31.251346-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"epic"}
 {"id":"bd-6sm6","title":"Improve test coverage for internal/export (37.1% → 60%)","description":"The export package has only 37.1% test coverage. Export functionality needs good coverage to ensure data integrity.\n\nCurrent coverage: 37.1%\nTarget coverage: 60%","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:06.802277-08:00","updated_at":"2025-12-23T22:32:29.16846-08:00","closed_at":"2025-12-23T22:32:29.16846-08:00"}
 {"id":"bd-6ss","title":"Improve test coverage","description":"The test suite reports less than 45% code coverage. Identify the specific uncovered areas of the codebase, including modules, functions, or features. Rank them by potential impact on system reliability and business value, from most to least, and provide actionable recommendations for improving coverage in each area.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-18T06:54:23.036822442-07:00","updated_at":"2025-12-18T07:17:49.245940799-07:00","closed_at":"2025-12-18T07:17:49.245940799-07:00"}
-{"id":"bd-6x6g","title":"Add multi-repo target repo switching in bd create","description":"In cmd/bd/create.go:164, there's a TODO to switch to the target repo for multi-repo support when creating issues. Currently the code may not properly handle creating issues in a different repo than the current one.\n\nFile: cmd/bd/create.go:164","status":"hooked","priority":3,"issue_type":"feature","created_at":"2025-12-28T16:32:37.130679-08:00","created_by":"stevey","updated_at":"2025-12-30T15:44:43.361095-08:00"}
+{"id":"bd-6x6g","title":"Add multi-repo target repo switching in bd create","description":"In cmd/bd/create.go:164, there's a TODO to switch to the target repo for multi-repo support when creating issues. Currently the code may not properly handle creating issues in a different repo than the current one.\n\nFile: cmd/bd/create.go:164","status":"hooked","priority":3,"issue_type":"feature","created_at":"2025-12-28T16:32:37.130679-08:00","created_by":"stevey","updated_at":"2025-12-30T15:55:53.181376-08:00"}
 {"id":"bd-70an","title":"test pin","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-21T11:19:16.760214-08:00","updated_at":"2025-12-21T11:19:46.500688-08:00","closed_at":"2025-12-21T11:19:46.500688-08:00"}
 {"id":"bd-70c4","title":"Gate await fields cleared by --no-daemon CLI access (not multi-repo)","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-25T23:30:38.648182-08:00","updated_at":"2025-12-26T23:38:47.972075-08:00","closed_at":"2025-12-26T23:38:47.972075-08:00","comments":[{"id":3,"issue_id":"bd-70c4","author":"mayor","text":"## Summary\nGate await fields (await_type, await_id, timeout_ns, waiters) are cleared when a CLI command accesses the database directly (--no-daemon) while the daemon is running. This is separate from the multi-repo issue fixed in bd-gr4q.\n\n## Reproduction\n1. Start daemon: bd daemon --start\n2. Create gate: bd gate create --await timer:5s (fields stored correctly)\n3. Verify: sqlite3 .beads/beads.db shows timer|5s\n4. Run CLI with --no-daemon: bd show \u003cid\u003e --no-daemon --no-auto-import --no-auto-flush\n5. Check again: fields are now empty\n\n## Investigation Notes\n- NOT caused by autoImportIfNewer (verified with --no-auto-import flag)\n- NOT caused by HydrateFromMultiRepo (no multi-repo config, returns early)\n- NOT caused by molecule loader (only creates new issues)\n- NOT caused by migrations (gate_columns only adds columns)\n- No database triggers found\n\nThe clearing happens somewhere in sqlite.NewWithTimeout() initialization or command execution path.\n\n## Related\n- bd-gr4q fixed the multi-repo path but this is a different code path\n- The fix pattern (COALESCE/NULLIF) may need to be applied elsewhere","created_at":"2025-12-26T07:30:49Z"}]}
 {"id":"bd-71v3","title":"Merge: topaz-1767083484329","description":"branch: polecat/topaz-1767083484329\ntarget: main\nsource_issue: topaz-1767083484329\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T00:39:43.095673-08:00","created_by":"beads/polecats/topaz","updated_at":"2025-12-30T00:54:58.57614-08:00","closed_at":"2025-12-30T00:54:58.57614-08:00","close_reason":"Branch polecat/topaz-1767083484329 no longer exists on remote"}
@@ -173,8 +173,8 @@
 {"id":"bd-7di","title":"worktree: any bd command is slow","description":"in a git worktree any bd command is slow, with a 2-3s pause before any results are shown. The identical command with `--no-daemon` is near instant.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-05T15:33:42.924618693-07:00","updated_at":"2025-12-25T22:04:11.200532-08:00","closed_at":"2025-12-25T22:04:11.200532-08:00"}
 {"id":"bd-7h5","title":"Add pinned field to issue schema","description":"Add boolean 'pinned' field to the issue schema. When true, the issue is marked as a persistent context marker that should not be treated as a work item.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:26.767247-08:00","updated_at":"2025-12-19T00:08:59.854605-08:00","closed_at":"2025-12-19T00:08:59.854605-08:00","dependencies":[{"issue_id":"bd-7h5","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:55.98635-08:00","created_by":"daemon"}]}
 {"id":"bd-7h7","title":"bd init should stop running daemon to avoid stale cache","description":"When running bd init, any running daemon continues with stale cached data, causing bd stats and other commands to show old counts.\n\nRepro:\n1. Have daemon running with 788 issues cached\n2. Clean JSONL to 128 issues, delete db, run bd init\n3. bd stats still shows 788 (daemon cache)\n4. Must manually run bd daemon --stop\n\nFix: bd init should automatically stop any running daemon before reinitializing.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T13:26:47.117226-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"}
-{"id":"bd-7l27","title":"Integrate migration detection into bd doctor","description":"Multiple migration commands (migrate_hash_ids.go, migrate_issues.go, migrate_sync.go, migrate_tombstones.go, migrate.go) have TODOs suggesting integration into 'bd doctor' for automatic migration detection. This would allow bd doctor to detect when migrations are needed and suggest running them.\n\nFiles:\n- cmd/bd/migrate_hash_ids.go:24\n- cmd/bd/migrate_issues.go:15\n- cmd/bd/migrate_sync.go:16\n- cmd/bd/migrate_tombstones.go:72\n- cmd/bd/migrate.go:22","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-28T16:32:24.018282-08:00","created_by":"stevey","updated_at":"2025-12-30T15:44:43.353203-08:00","closed_at":"2025-12-30T00:06:59.401939-08:00","close_reason":"Implemented: Added CheckPendingMigrations to bd doctor, updated existing migration suggestions to use modern bd migrate subcommands"}
-{"id":"bd-7l67","title":"Add bd state and bd set-state helper commands","description":"Convenience commands for the labels-as-state pattern documented in LABELS.md.\n\n`bd state \u003crole\u003e \u003cdimension\u003e` - Query the current value of a state dimension\nExample: bd state witness-alpha patrol → outputs: active\n\n`bd set-state \u003crole\u003e \u003cdimension\u003e=\u003cvalue\u003e [--reason \"...\"]` - Atomically creates an event bead and updates the label\nExample: bd set-state witness-alpha patrol=muted --reason \"Investigating stuck polecat\"\n\nThis would combine the manual steps:\n1. bd create \"\u003creason\u003e\" -t event --parent \u003crole\u003e\n2. bd label remove \u003crole\u003e \u003cdimension\u003e:\u003cold-value\u003e\n3. bd label add \u003crole\u003e \u003cdimension\u003e:\u003cnew-value\u003e\n\nInto a single atomic operation.\n\nDiscovered from: bd-31ae","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-30T15:46:40.679911-08:00","created_by":"stevey","updated_at":"2025-12-30T15:56:44.713687-08:00","closed_at":"2025-12-30T15:56:44.713687-08:00","close_reason":"Implemented bd state and bd set-state commands with tests and documentation","dependencies":[{"issue_id":"bd-7l67","depends_on_id":"bd-31ae","type":"discovered-from","created_at":"2025-12-30T15:46:50.184553-08:00","created_by":"stevey"}]}
+{"id":"bd-7l27","title":"Integrate migration detection into bd doctor","description":"Multiple migration commands (migrate_hash_ids.go, migrate_issues.go, migrate_sync.go, migrate_tombstones.go, migrate.go) have TODOs suggesting integration into 'bd doctor' for automatic migration detection. This would allow bd doctor to detect when migrations are needed and suggest running them.\n\nFiles:\n- cmd/bd/migrate_hash_ids.go:24\n- cmd/bd/migrate_issues.go:15\n- cmd/bd/migrate_sync.go:16\n- cmd/bd/migrate_tombstones.go:72\n- cmd/bd/migrate.go:22","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-28T16:32:24.018282-08:00","created_by":"stevey","updated_at":"2025-12-30T15:55:53.18209-08:00","closed_at":"2025-12-30T00:06:59.401939-08:00"}
+{"id":"bd-7l67","title":"Add bd state and bd set-state helper commands","description":"Convenience commands for the labels-as-state pattern documented in LABELS.md.\n\n`bd state \u003crole\u003e \u003cdimension\u003e` - Query the current value of a state dimension\nExample: bd state witness-alpha patrol → outputs: active\n\n`bd set-state \u003crole\u003e \u003cdimension\u003e=\u003cvalue\u003e [--reason \"...\"]` - Atomically creates an event bead and updates the label\nExample: bd set-state witness-alpha patrol=muted --reason \"Investigating stuck polecat\"\n\nThis would combine the manual steps:\n1. bd create \"\u003creason\u003e\" -t event --parent \u003crole\u003e\n2. bd label remove \u003crole\u003e \u003cdimension\u003e:\u003cold-value\u003e\n3. bd label add \u003crole\u003e \u003cdimension\u003e:\u003cnew-value\u003e\n\nInto a single atomic operation.\n\nDiscovered from: bd-31ae","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-30T15:46:40.679911-08:00","created_by":"stevey","updated_at":"2025-12-30T15:59:55.072376-08:00","closed_at":"2025-12-30T15:56:44.713687-08:00","dependencies":[{"issue_id":"bd-7l67","depends_on_id":"bd-31ae","type":"discovered-from","created_at":"2025-12-30T15:46:50.184553-08:00","created_by":"stevey"}]}
 {"id":"bd-7m16","title":"GH#519: bd sync fails when sync.branch is currently checked-out branch","description":"bd sync tries to create worktree for sync.branch even when already on that branch. Should commit directly instead. See GitHub issue #519.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:36.613211-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"}
 {"id":"bd-7p5l","title":"Fix N+1 query pattern in swarm status blocked check","description":"In getSwarmStatus, when checking if an issue is blocked, we query each dependency individually with GetIssue. With 100 issues and 5 deps each, thats 500 extra queries. Fix: Build a status map upfront from the already-fetched childIssues slice. File: cmd/bd/swarm.go:706-710","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-28T21:31:07.586335-08:00","created_by":"beads/crew/emma","updated_at":"2025-12-28T21:35:30.605065-08:00","closed_at":"2025-12-28T21:35:30.605065-08:00","dependencies":[{"issue_id":"bd-7p5l","depends_on_id":"bd-m6r3","type":"blocks","created_at":"2025-12-28T21:31:17.309538-08:00","created_by":"daemon"}]}
 {"id":"bd-7pwh","title":"HOP-compatible schema additions","description":"Add optional fields to Beads schema to enable future HOP integration.\nAll fields are backwards-compatible (optional, omitted if empty).\n\n## Reference\nSee ~/gt/docs/hop/BEADS-SCHEMA-CHANGES.md for full specification.\n\n## P1 Changes (Must Have Before Launch)\n\n### 1. EntityRef type\nStructured entity reference that can become HOP URI:\n```go\ntype EntityRef struct {\n    Name     string // \"polecat/Nux\"\n    Platform string // \"gastown\"\n    Org      string // \"steveyegge\"  \n    ID       string // \"polecat-nux\"\n}\n```\n\n### 2. creator field\nEvery issue tracks who created it (EntityRef).\n\n### 3. assignee_ref field\nStructured form alongside existing string assignee.\n\n### 4. validations array\nTrack who validated work completion:\n```go\ntype Validation struct {\n    Validator *EntityRef\n    Outcome   string    // accepted, rejected, revision_requested\n    Timestamp time.Time\n    Score     *float32  // Future\n}\n```\n\n## P2 Changes (Should Have)\n\n### 5. work_type field\n\"mutex\" (default) or \"open_competition\"\n\n### 6. crystallizes field\nBoolean - does this work compound (true) or evaporate (false)?\n\n### 7. cross_refs field\nArray of URIs to beads in other repos:\n- \"beads://github/anthropics/claude-code/bd-xyz\"\n\n## P3 Changes (Nice to Have)\n\n### 8. skill_vector placeholder\nReserved for future embeddings: []float32\n\n## Implementation Notes\n- All fields optional in JSONL serialization\n- Empty/null fields omit from output\n- No migration needed for existing data\n- CLI additions: --creator, --validated-by filters","notes":"Scope reduced after review. P1 only: EntityRef type, creator field, validations array. Deferred: assignee_ref, work_type, crystallizes, cross_refs, skill_vector (YAGNI - semantics unclear, can add later when needed).","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-22T02:42:39.267984-08:00","updated_at":"2025-12-22T20:09:09.211821-08:00","closed_at":"2025-12-22T20:09:09.211821-08:00"}
@@ -184,7 +184,7 @@
 {"id":"bd-7xrg","title":"Refinery Patrol","description":"Merge queue processor patrol loop with verification gates.","status":"open","priority":2,"issue_type":"molecule","created_at":"2025-12-27T18:14:31.190713-08:00","updated_at":"2025-12-27T18:14:31.190713-08:00"}
 {"id":"bd-7yg","title":"Git merge driver uses invalid placeholders (%L, %R instead of %A, %B)","description":"## Problem\n\nThe beads git merge driver is configured with invalid Git placeholders:\n\n```\ngit config merge.beads.driver \"bd merge %A %O %L %R\"\n```\n\nGit doesn't recognize `%L` or `%R` as valid merge driver placeholders. The valid placeholders are:\n- `%O` = base (common ancestor)\n- `%A` = current version (ours)\n- `%B` = other version (theirs)\n\n## Impact\n\n- Affects ALL users when they have `.beads/beads.jsonl` merge conflicts\n- Automatic JSONL merge fails with error: \"error reading left file: failed to open file: open 7: no such file or directory\"\n- Users must manually resolve conflicts instead of getting automatic merge\n\n## Root Cause\n\nThe `bd init` command (or wherever the merge driver is configured) is using non-standard placeholders. When Git encounters `%L` and `%R`, it either passes them literally or interprets them incorrectly.\n\n## Fix\n\nUpdate the merge driver configuration to:\n```\ngit config merge.beads.driver \"bd merge %A %O %A %B\"\n```\n\nWhere:\n- 1st `%A` = output file (current file, will be overwritten)\n- `%O` = base (common ancestor)\n- 2nd `%A` = left/current version\n- `%B` = right/other version\n\n## Action Items\n\n1. Fix `bd init` (or equivalent setup command) to use correct placeholders\n2. Add migration/warning for existing users with misconfigured merge driver\n3. Update documentation with correct merge driver setup\n4. Consider adding validation when `bd init` is run","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-11-21T19:51:55.747608-05:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"}
 {"id":"bd-7z4","title":"Add tests for delete operations","description":"Core delete functionality including deleteViaDaemon, createTombstone, and deleteIssue functions have 0% coverage. These are critical for data integrity and need comprehensive test coverage.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T07:00:34.867680882-07:00","updated_at":"2025-12-23T23:48:50.087306-08:00","closed_at":"2025-12-23T23:48:50.087306-08:00","dependencies":[{"issue_id":"bd-7z4","depends_on_id":"bd-6ss","type":"discovered-from","created_at":"2025-12-18T07:00:34.870254935-07:00","created_by":"matt"}]}
-{"id":"bd-7zka","title":"Implement formula features: repeat, for_each, branch, gate, compose.split","description":"Multiple formula features in internal/formula/types.go are marked as \"Not yet implemented\":\n\nIMPLEMENTED (TODOs removed):\n- Step.Expand: Inline expansion - implemented in ApplyInlineExpansions (expand.go)\n- Step.ExpandVars: Variable overrides for expansion - implemented alongside Expand\n\nSTILL NOT IMPLEMENTED (TODOs remain):\n- Step.Condition: Make step optional based on variable (types.go:177-180)\n- Step.Gate: Async wait condition for step (types.go:185-187)\n- Gate struct: Schema defined but not processed in bd cook (types.go:209-210)\n\nFile: internal/formula/types.go","status":"open","priority":3,"issue_type":"feature","created_at":"2025-12-28T16:32:54.493002-08:00","created_by":"stevey","updated_at":"2025-12-30T15:44:43.345999-08:00"}
+{"id":"bd-7zka","title":"Implement formula features: repeat, for_each, branch, gate, compose.split","description":"Multiple formula features in internal/formula/types.go are marked as \"Not yet implemented\":\n\nIMPLEMENTED (TODOs removed):\n- Step.Expand: Inline expansion - implemented in ApplyInlineExpansions (expand.go)\n- Step.ExpandVars: Variable overrides for expansion - implemented alongside Expand\n\nSTILL NOT IMPLEMENTED (TODOs remain):\n- Step.Condition: Make step optional based on variable (types.go:177-180)\n- Step.Gate: Async wait condition for step (types.go:185-187)\n- Gate struct: Schema defined but not processed in bd cook (types.go:209-210)\n\nFile: internal/formula/types.go","status":"open","priority":3,"issue_type":"feature","created_at":"2025-12-28T16:32:54.493002-08:00","created_by":"stevey","updated_at":"2025-12-30T10:18:14.312804-08:00"}
 {"id":"bd-801b","title":"Merge: bd-bqcc","description":"branch: polecat/capable\ntarget: main\nsource_issue: bd-bqcc\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-23T00:26:04.306756-08:00","updated_at":"2025-12-23T01:33:25.728087-08:00","closed_at":"2025-12-23T01:33:25.728087-08:00"}
 {"id":"bd-83f5","title":"Remove top-level comment alias","description":"Remove 'comment' as top-level command. Users should use 'comments add' instead. Reduces command surface area.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-28T12:59:12.33579-08:00","created_by":"stevey","updated_at":"2025-12-28T13:06:53.335122-08:00","closed_at":"2025-12-28T13:06:53.335122-08:00"}
 {"id":"bd-89f89fc0","title":"Remove unreachable RPC methods","description":"Several RPC server and client methods are unreachable and should be removed:\n\nServer methods (internal/rpc/server.go):\n- `Server.GetLastImportTime` (line 2116)\n- `Server.SetLastImportTime` (line 2123)\n- `Server.findJSONLPath` (line 2255)\n\nClient methods (internal/rpc/client.go):\n- `Client.Import` (line 311) - RPC import not used (daemon uses autoimport)\n\nEvidence:\n```bash\ngo run golang.org/x/tools/cmd/deadcode@latest -test ./...\n```\n\nImpact: Removes ~80 LOC of unused RPC code","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-10-28T16:20:02.432202-07:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
@@ -217,7 +217,7 @@
 {"id":"bd-9qj5","title":"Merge: bd-c7y5","description":"branch: polecat/toast\ntarget: main\nsource_issue: bd-c7y5\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-23T20:45:02.626929-08:00","updated_at":"2025-12-23T21:21:57.699742-08:00","closed_at":"2025-12-23T21:21:57.699742-08:00"}
 {"id":"bd-9szg","title":"Test prefix bd","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T14:24:41.470665-08:00","created_by":"stevey","updated_at":"2025-12-27T14:24:50.420887-08:00","deleted_at":"2025-12-27T14:24:50.420887-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
 {"id":"bd-9usz","title":"Test suite hangs/never finishes","description":"Running 'go test ./... -count=1' hangs indefinitely. The full test suite never completes, making it difficult to verify changes. Need to investigate which tests are hanging and fix or add timeouts.","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-16T21:56:27.80191-08:00","updated_at":"2025-12-23T23:48:57.837606-08:00","closed_at":"2025-12-23T23:48:57.837606-08:00"}
-{"id":"bd-a0cp","title":"Consider using types.Status in merge package for type safety","description":"The merge package uses string for status comparison (e.g., result.Status == closed, issue.Status == StatusTombstone). The types package defines Status as a type alias with validation. While the merge package needs its own Issue struct for JSONL flexibility, it could import and use types.Status for constants to get compile-time type checking. Current code: if left == closed || right == closed. Could be: if left == string(types.StatusClosed). This is low priority since string comparison works correctly. Files: internal/merge/merge.go:44, 488, 501-521","status":"closed","priority":4,"issue_type":"task","assignee":"beads/polecats/jade","created_at":"2025-12-05T16:37:10.690424-08:00","updated_at":"2025-12-30T15:54:45.570222-08:00","closed_at":"2025-12-30T15:54:45.570222-08:00","close_reason":"Added StatusClosed constant derived from types.StatusClosed and replaced hardcoded strings with the constant for type safety"}
+{"id":"bd-a0cp","title":"Consider using types.Status in merge package for type safety","description":"The merge package uses string for status comparison (e.g., result.Status == closed, issue.Status == StatusTombstone). The types package defines Status as a type alias with validation. While the merge package needs its own Issue struct for JSONL flexibility, it could import and use types.Status for constants to get compile-time type checking. Current code: if left == closed || right == closed. Could be: if left == string(types.StatusClosed). This is low priority since string comparison works correctly. Files: internal/merge/merge.go:44, 488, 501-521","status":"closed","priority":4,"issue_type":"task","assignee":"beads/polecats/jade","created_at":"2025-12-05T16:37:10.690424-08:00","updated_at":"2025-12-30T15:59:55.073173-08:00","closed_at":"2025-12-30T15:54:45.570222-08:00"}
 {"id":"bd-a15d","title":"Add test files for internal/storage","description":"The internal/storage package has no test files at all. This package provides the storage interface abstraction.\n\nCurrent coverage: N/A (no test files)\nTarget: Add basic interface tests","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:11.363017-08:00","updated_at":"2025-12-23T23:56:07.002735-08:00","closed_at":"2025-12-23T23:56:07.002735-08:00"}
 {"id":"bd-a1t0","title":"Merge: opal-1767138520240","description":"branch: polecat/opal-1767138520240\ntarget: main\nsource_issue: opal-1767138520240\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T15:59:09.905942-08:00","created_by":"beads/polecats/opal","updated_at":"2025-12-30T15:59:09.905942-08:00"}
 {"id":"bd-a3sj","title":"RemoveDependency fails on external deps - FK violation in dirty_issues","description":"In dependencies.go:225, RemoveDependency marks BOTH issueID and dependsOnID as dirty. For external refs (e.g., external:project:capability), dependsOnID doesn't exist in the issues table. This causes FK violation since dirty_issues.issue_id has FK constraint to issues.id.\n\nFix: Check if dependsOnID starts with 'external:' and only mark source issue as dirty, matching the logic in AddDependency (lines 162-170).\n\nRepro: bd dep rm \u003cissue\u003e external:project:capability","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-21T23:44:51.981138-08:00","updated_at":"2025-12-22T17:48:29.062424-08:00","closed_at":"2025-12-22T17:48:29.062424-08:00","dependencies":[{"issue_id":"bd-a3sj","depends_on_id":"bd-zmmy","type":"discovered-from","created_at":"2025-12-21T23:44:51.982343-08:00","created_by":"daemon"}]}
@@ -227,7 +227,7 @@
 {"id":"bd-abjw","title":"Consider consolidating config.yaml parsing into shared utility","description":"Multiple places parse config.yaml with custom structs:\n\n1. **autoimport.go:148** - `localConfig{SyncBranch}`\n2. **main.go:310** - strings.Contains for no-db (fragile, see bd-r6k2)\n3. **doctor.go:863** - strings.Contains for no-db (fragile, see bd-r6k2)\n4. **internal/config/config.go** - Uses viper (but caches at startup, problematic for tests)\n\nConsider creating a shared utility in `internal/configfile/` or extending the viper config:\n\n```go\n// internal/configfile/yaml.go\ntype YAMLConfig struct {\n    SyncBranch string `yaml:\"sync-branch\"`\n    NoDb       bool   `yaml:\"no-db\"`\n    IssuePrefix string `yaml:\"issue-prefix\"`\n    Author     string `yaml:\"author\"`\n}\n\nfunc LoadYAML(beadsDir string) (*YAMLConfig, error) {\n    // Parse config.yaml with proper YAML library\n}\n```\n\nBenefits:\n- Single source of truth for config.yaml structure\n- Proper YAML parsing everywhere\n- Easier to add new config fields\n\nTrade-off: May add complexity for simple one-off reads.","status":"open","priority":4,"issue_type":"task","created_at":"2025-12-07T02:03:26.067311-08:00","updated_at":"2025-12-07T02:03:26.067311-08:00"}
 {"id":"bd-adoe","title":"Add --hard flag to bd cleanup to permanently cull tombstones before cutoff date","description":"Currently tombstones persist for 30 days before cleanup prunes them. Need an official way to force-cull tombstones earlier than the default TTL, for scenarios like cleaning house after extended absence where resurrection from old clones is not a concern. Proposed: bd cleanup --hard --older-than N to bypass the 30-day tombstone TTL.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:17:31.064914-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"}
 {"id":"bd-aec5439f","title":"Update LINTING.md with current baseline","description":"After cleanup, document the remaining acceptable baseline in LINTING.md so we can track regression.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-10-27T18:53:10.38679-07:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
-{"id":"bd-ag35","title":"Add daemon RPC endpoints for config and stale check","description":"Two TODOs request daemon RPC endpoints:\n\n1. cmd/bd/create.go:208 - Add RPC method to get config in daemon mode\n2. cmd/bd/mol_stale.go:67 - Add RPC endpoint for stale check\n\nThese would allow the CLI to query the daemon for configuration and staleness checks instead of reading directly.\n\nFiles:\n- cmd/bd/create.go:208\n- cmd/bd/mol_stale.go:67","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-28T16:32:38.113203-08:00","created_by":"stevey","updated_at":"2025-12-30T15:44:43.354686-08:00","closed_at":"2025-12-30T07:00:00.209327-08:00","close_reason":"Implemented GetConfig and MolStale RPC endpoints. CLI commands now work in daemon mode."}
+{"id":"bd-ag35","title":"Add daemon RPC endpoints for config and stale check","description":"Two TODOs request daemon RPC endpoints:\n\n1. cmd/bd/create.go:208 - Add RPC method to get config in daemon mode\n2. cmd/bd/mol_stale.go:67 - Add RPC endpoint for stale check\n\nThese would allow the CLI to query the daemon for configuration and staleness checks instead of reading directly.\n\nFiles:\n- cmd/bd/create.go:208\n- cmd/bd/mol_stale.go:67","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-28T16:32:38.113203-08:00","created_by":"stevey","updated_at":"2025-12-30T15:55:53.18287-08:00","closed_at":"2025-12-30T07:00:00.209327-08:00"}
 {"id":"bd-agye","title":"Merge: quartz-1767083470444","description":"branch: polecat/quartz-1767083470444\ntarget: main\nsource_issue: quartz-1767083470444\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T00:36:39.737365-08:00","created_by":"beads/polecats/quartz","updated_at":"2025-12-30T00:54:59.2694-08:00","closed_at":"2025-12-30T00:54:59.2694-08:00","close_reason":"Branch polecat/quartz-1767083470444 no longer exists on remote"}
 {"id":"bd-ahot","title":"HANDOFF: Molecule bonding - spawn done, bond next","description":"## Context\n\nContinuing work on bd-o5xe (Molecule bonding epic).\n\n## Completed This Session\n\n- bd-mh4w: Renamed bond to spawn in mol.go\n- bd-rnnr: Added BondRef data model to types.go\n\n## Now Unblocked\n\n1. bd-o91r: Polymorphic bond command [P1]\n2. bd-iw4z: Compound visualization [P2]  \n3. bd-iq19: Distill command [P2]\n\n## Key Files\n\n- cmd/bd/mol.go\n- internal/types/types.go\n\n## Next Step\n\nStart with bd-o91r. Run bd show bd-o5xe for context.","status":"closed","priority":1,"issue_type":"message","created_at":"2025-12-21T01:32:13.940757-08:00","updated_at":"2025-12-21T11:24:30.171048-08:00","closed_at":"2025-12-21T11:24:30.171048-08:00"}
 {"id":"bd-air9","title":"bd create --parent allocates colliding child IDs when child_counters not backfilled","description":"GH#728: When explicit child IDs are created (--id bd-test.1) or imported from JSONL, child_counters table isn't updated. Then --parent auto-allocation starts at 1 and collides.\n\nFix approach: Update child_counters when creating issues with explicit hierarchical IDs that match \u003cparent\u003e.\u003cn\u003e pattern.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-24T14:27:11.990171-08:00","updated_at":"2025-12-24T14:28:40.154864-08:00","closed_at":"2025-12-24T14:28:40.154864-08:00"}
@@ -336,7 +336,7 @@
 {"id":"bd-e1085716","title":"bd validate - Comprehensive health check","description":"Run all validation checks in one command.\n\nChecks:\n- Duplicates\n- Orphaned dependencies\n- Test pollution\n- Git conflicts\n\nSupports --fix-all for auto-repair.\n\nDepends on bd-cbed9619.1, bd-0dcea000, bd-31aab707, bd-9826b69a.\n\nFiles: cmd/bd/validate.go (new)","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-29T23:05:13.980679-07:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-e7ou","title":"Fix --as flag: uses title instead of ID in mol bond","description":"In bondProtoProto, the --as flag is documented as 'Custom ID for compound proto' but the implementation uses it as the title, not the issue ID.\n\n**Current behavior (mol.go:637-638):**\n```go\nif customID != '' {\n    compoundTitle = customID  // Used as title, not ID\n}\n```\n\n**Options:**\n1. Change flag description to say 'Custom title' (documentation fix)\n2. Actually use it as a custom ID prefix or full ID (feature change)\n3. Add separate --title flag and make --as actually set ID\n\nRecommend option 1 for simplest fix - change 'Custom ID' to 'Custom title' in the flag description.","status":"closed","priority":3,"issue_type":"bug","created_at":"2025-12-21T10:22:59.069368-08:00","updated_at":"2025-12-21T21:18:48.514513-08:00","closed_at":"2025-12-21T21:18:48.514513-08:00"}
 {"id":"bd-e8kq","title":"Consolidate migrate-* commands into migrate subcommands","description":"Move migrate-hash-ids, migrate-issues, migrate-sync, migrate-tombstones under 'migrate' as subcommands. Reduces 5 top-level commands to 1.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-28T12:59:09.187369-08:00","created_by":"stevey","updated_at":"2025-12-28T13:02:51.321846-08:00","closed_at":"2025-12-28T13:02:51.321848-08:00"}
-{"id":"bd-ecmd","title":"Add type: event for state transitions","description":"Events capture operational state changes as immutable records.\n\nFields needed:\n- event_type: string (namespaced category like patrol.muted, agent.started)  \n- actor: string (entity URI who caused this)\n- target: string (entity URI or bead ID affected)\n- payload: object (event-specific JSON data)\n\nExample:\n  id: evt-x7k2\n  type: event\n  event_type: patrol.muted\n  actor: human:overseer\n  target: agent:deacon\n  payload: {reason: fixing deadlock, until: gt-abc1}\n\nThis enables:\n- bd activity --follow showing events\n- bd list --type=event --target=agent:deacon\n- Full audit trail for operational state\n- HOP-compatible transaction records","status":"closed","priority":1,"issue_type":"feature","assignee":"beads/polecats/obsidian","created_at":"2025-12-30T15:15:23.440095-08:00","created_by":"gastown/crew/max","updated_at":"2025-12-30T15:54:09.224-08:00","closed_at":"2025-12-30T15:54:09.224-08:00","close_reason":"Implemented event type with event_kind, actor, target, and payload fields"}
+{"id":"bd-ecmd","title":"Add type: event for state transitions","description":"Events capture operational state changes as immutable records.\n\nFields needed:\n- event_type: string (namespaced category like patrol.muted, agent.started)  \n- actor: string (entity URI who caused this)\n- target: string (entity URI or bead ID affected)\n- payload: object (event-specific JSON data)\n\nExample:\n  id: evt-x7k2\n  type: event\n  event_type: patrol.muted\n  actor: human:overseer\n  target: agent:deacon\n  payload: {reason: fixing deadlock, until: gt-abc1}\n\nThis enables:\n- bd activity --follow showing events\n- bd list --type=event --target=agent:deacon\n- Full audit trail for operational state\n- HOP-compatible transaction records","status":"closed","priority":1,"issue_type":"feature","assignee":"beads/polecats/obsidian","created_at":"2025-12-30T15:15:23.440095-08:00","created_by":"gastown/crew/max","updated_at":"2025-12-30T15:59:55.073919-08:00","closed_at":"2025-12-30T15:54:09.224-08:00"}
 {"id":"bd-efo6","title":"Test cross-rig issue creation","description":"Testing --rig flag from town root","status":"tombstone","priority":3,"issue_type":"task","created_at":"2025-12-27T00:43:21.006012-08:00","created_by":"stevey","updated_at":"2025-12-27T00:43:27.389223-08:00","deleted_at":"2025-12-27T00:43:27.389223-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
 {"id":"bd-ehwp","title":"Merge: ruby-1767138542815","description":"branch: polecat/ruby-1767138542815\ntarget: main\nsource_issue: ruby-1767138542815\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T15:59:42.840764-08:00","created_by":"beads/polecats/ruby","updated_at":"2025-12-30T15:59:42.840764-08:00"}
 {"id":"bd-eijl","title":"bd ship command for publishing capabilities","description":"Add `bd ship \u003ccapability\u003e` command that:\n\n1. Finds issue with `export:\u003ccapability\u003e` label\n2. Validates issue is closed (or --force to override)\n3. Adds `provides:\u003ccapability\u003e` label\n4. Protects `provides:*` namespace (only bd ship can add these labels)\n\nExample:\n```bash\nbd ship mol-run-assignee\n# Output: Shipped mol-run-assignee (bd-xyz)\n```\n\nPart of cross-project dependency system.\nSee: gastown/docs/cross-project-deps.md","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-21T22:37:19.123024-08:00","updated_at":"2025-12-21T23:11:47.498859-08:00","closed_at":"2025-12-21T23:11:47.498859-08:00"}
@@ -346,7 +346,7 @@
 {"id":"bd-etyv","title":"Smart --var detection for mol distill","description":"Implemented bidirectional syntax support for mol distill --var flag.\n\n**Problem:**\n- spawn uses: --var variable=value (assignment style)\n- distill used: --var value=variable (substitution style)\n- Agents would naturally guess spawn-style for both\n\n**Solution:**\nSmart detection that accepts BOTH syntaxes by checking which side appears in the epic text:\n- --var branch=feature-auth → finds 'feature-auth' in text → works\n- --var feature-auth=branch → finds 'feature-auth' in text → also works\n\n**Changes:**\n- Added parseDistillVar() with smart detection\n- Added collectSubgraphText() helper\n- Restructured runMolDistill to load subgraph before parsing vars\n- Updated help text to document both syntaxes\n- Added comprehensive tests in mol_test.go\n\n**Edge cases handled:**\n- Both sides found: prefers spawn-style (more common guess)\n- Neither found: helpful error message\n- Empty sides: validation error\n- Values containing '=' (e.g., KEY=VALUE): works via SplitN\n\nEmbodies the Beads philosophy: watch what agents do, make their guess correct.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-21T11:08:50.83923-08:00","updated_at":"2025-12-21T11:08:56.432536-08:00","closed_at":"2025-12-21T11:08:56.432536-08:00"}
 {"id":"bd-exy3","title":"Ephemeral patrol molecules leaking into beads","description":"## Problem\n\nEphemeral patrol orchestration molecules (e.g., mol-deacon-patrol, wisp step issues) keep appearing in `bd ready` output in gastown beads.\n\nThese are ephemeral/wisp issues that should:\n1. Never be synced to the beads-sync branch\n2. Live only in .beads-wisp/ (ephemeral storage)\n3. Be squashed to digests, not persisted as regular beads\n\n## Examples found\n\n- gt-wisp-6ue: mol-deacon-patrol\n- gt-pacdm: mol-deacon-patrol  \n- gt-wisp-mpm: Check own context limit\n- gt-wisp-lkc: Clean dead sessions\n\n## Investigation needed\n\n1. Where are these being created? (gt mol bond? manual bd create?)\n2. Why are they using the gt- prefix instead of staying ephemeral?\n3. Is the wisp storage (.beads-wisp/) being used correctly?\n4. Is bd sync accidentally picking up ephemeral issues?\n\n## Expected behavior\n\nPatrol molecules and their steps should be ephemeral and never appear in `bd ready` or `bd list`.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-27T17:04:16.51075-08:00","created_by":"gastown/crew/joe","updated_at":"2025-12-27T19:18:16.809273-08:00","closed_at":"2025-12-27T19:18:16.809273-08:00"}
 {"id":"bd-eyrh","title":"🤝 HANDOFF: Review remaining beads PRs","description":"## Current State\nJust merged PR #653 (doctor refactor) and added tests to restore coverage.\n\n## Remaining Open PRs to Review\nRun `gh pr list --repo steveyegge/beads` to see current list. As of handoff:\n\n1. #655 - feat: Linear Integration (jblwilliams)\n2. #651 - feat(audit): agent audit trail (dchichkov)\n3. #648 - Stop init creating redundant @AGENTS.md (maphew)\n4. #646 - fix(unix): handle Statfs field types (jordanhubbard)\n5. #645 - feat: /plan-to-beads Claude Code command (petebytes)\n6. #642, #641, #640 - sync branch fixes (cpdata)\n\n## Review Checklist\n- Check CI status with `gh pr checks \u003cnum\u003e --repo steveyegge/beads`\n- Verify no .beads/ data leaking (we have a hook now)\n- Review code quality\n- Merge good ones, request changes on problematic ones\n\n## Notes\n- User wants us to be proactive about merging good PRs\n- Can add tests ourselves if coverage drops","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-19T17:44:34.149837-08:00","updated_at":"2025-12-21T13:53:33.613805-08:00","deleted_at":"2025-12-21T13:53:33.613805-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"}
-{"id":"bd-eyto","title":"Time-dependent tests may be flaky near TTL boundary","description":"Several tombstone merge tests use time.Now() to create test data: time.Now().Add(-24 * time.Hour), time.Now().Add(-60 * 24 * time.Hour), etc. While these work reliably in practice (24h vs 30d TTL has large margin), they could theoretically be flaky if: 1) Tests run slowly, 2) System clock changes during test, 3) TTL constants change. Recommendation: Consider using a fixed reference time or time injection for deterministic tests. Lower priority since current margin is large. Files: internal/merge/merge_test.go:1337-1338, 1352-1353, 1548-1549, 1590-1591","status":"hooked","priority":3,"issue_type":"task","created_at":"2025-12-05T16:37:02.348143-08:00","updated_at":"2025-12-30T15:44:43.36321-08:00"}
+{"id":"bd-eyto","title":"Time-dependent tests may be flaky near TTL boundary","description":"Several tombstone merge tests use time.Now() to create test data: time.Now().Add(-24 * time.Hour), time.Now().Add(-60 * 24 * time.Hour), etc. While these work reliably in practice (24h vs 30d TTL has large margin), they could theoretically be flaky if: 1) Tests run slowly, 2) System clock changes during test, 3) TTL constants change. Recommendation: Consider using a fixed reference time or time injection for deterministic tests. Lower priority since current margin is large. Files: internal/merge/merge_test.go:1337-1338, 1352-1353, 1548-1549, 1590-1591","status":"hooked","priority":3,"issue_type":"task","created_at":"2025-12-05T16:37:02.348143-08:00","updated_at":"2025-12-30T15:55:53.183599-08:00"}
 {"id":"bd-f0wm","title":"Swarm status doesn't update after task completions","description":"During swarm bd-784c, the swarm status remained at '9% (1/11 tasks merged)' even after 5 tasks were completed and closed.\n\n**Observed:**\n```\ngt swarm status bd-784c\nProgress: 9% (1/11 tasks merged)\n```\n\nBut bd list showed 4+ issues closed:\n- bd-j3dj, bd-kkka, bd-1tkd, bd-9btu all closed\n\n**Expected:**\nSwarm status should reflect actual completion count, either by:\n1. Polling issue status from beads\n2. Updating when polecats close issues\n3. Updating when commits are pushed to integration branch\n\n**Impact:**\nCoordinator (me) had to manually check bd list to know actual progress.","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-28T16:17:49.27816-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-28T22:14:20.098792-08:00","closed_at":"2025-12-28T22:14:20.098792-08:00"}
 {"id":"bd-f2lb","title":"Update CHANGELOG.md with release notes","description":"Add meaningful release notes to CHANGELOG.md describing what changed in test-squash","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-21T13:52:33.066065-08:00","updated_at":"2025-12-21T13:53:49.858742-08:00","deleted_at":"2025-12-21T13:53:49.858742-08:00","deleted_by":"stevey","delete_reason":"manual delete","original_type":"task"}
 {"id":"bd-f3ll","title":"Merge: bd-ot0w","description":"branch: polecat/dementus\ntarget: main\nsource_issue: bd-ot0w\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:20:33.495772-08:00","updated_at":"2025-12-20T23:17:27.000252-08:00","closed_at":"2025-12-20T23:17:27.000252-08:00"}
@@ -369,10 +369,10 @@
 {"id":"bd-fom","title":"Remove all deletions.jsonl code except migration","description":"There's deletions manifest code spread across the entire codebase that should have been removed after tombstone migration:\n\nFiles with deletions code (non-migration):\n- internal/deletions/ - entire package\n- cmd/bd/sync.go - 25+ references, auto-compact, sanitize\n- cmd/bd/delete.go - dual-writes to deletions.jsonl\n- internal/importer/importer.go - checks deletions manifest\n- internal/syncbranch/worktree.go - merges deletions.jsonl\n- cmd/bd/doctor/fix/sync.go - cleanupDeletionsManifest\n- cmd/bd/doctor/fix/deletions.go - HydrateDeletionsManifest\n- cmd/bd/integrity.go - checks deletions for data loss\n- cmd/bd/deleted.go - entire command\n- cmd/bd/compact.go - pruneDeletionsManifest\n- cmd/bd/doctor.go - checkDeletionsManifest\n- Plus many more\n\nAction: Aggressively remove all non-migration deletions code. Tombstones are the only deletion mechanism now.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T13:29:04.960863-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-fu83","title":"Fix daemon/direct mode inconsistency in relate and duplicate commands","description":"The relate.go and duplicate.go commands have inconsistent daemon/direct mode handling:\n\nWhen daemonClient is connected, they resolve IDs via RPC but then perform updates directly via store.UpdateIssue(), bypassing the daemon.\n\nAffected locations:\n- relate.go:125-139 (runRelate update)\n- relate.go:235-246 (runUnrelate update)  \n- duplicate.go:120 (runDuplicate update)\n- duplicate.go:207 (runSupersede update)\n\nShould either use RPC for updates when daemon is running, or document why direct access is intentional.","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-16T20:52:54.164189-08:00","updated_at":"2025-12-21T21:47:14.10222-08:00","closed_at":"2025-12-21T21:47:14.10222-08:00"}
 {"id":"bd-fx7v","title":"Improve test coverage for cmd/bd/doctor/fix (23.9% → 50%)","description":"The doctor/fix package has only 23.9% test coverage. The doctor fix functionality is important for troubleshooting.\n\nCurrent coverage: 23.9%\nTarget coverage: 50%","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:05.67127-08:00","updated_at":"2025-12-23T22:32:34.337963-08:00","closed_at":"2025-12-23T22:32:34.337963-08:00"}
-{"id":"bd-fy4q","title":"Phase 1.2 follow-up: Clarify format storage","description":"Phase 1.2 created the bdt executable structure but issues.toon is currently stored in JSONL format, not TOON format.\n\nThis is intentional for now:\n- Phase 1.2 (bd-jv4w): Just infrastructure - separate binary, separate directory\n- Phase 1.3 (bd-j0tr): Implement actual TOON encoding/writing\n\nFor now, keep as-is: filename '.toon' signals intent, content is JSONL (interim format). Phase 1.3 will switch to actual TOON.","status":"hooked","priority":3,"issue_type":"task","created_at":"2025-12-19T14:03:19.491040345-07:00","updated_at":"2025-12-30T15:44:43.351039-08:00","dependencies":[{"issue_id":"bd-fy4q","depends_on_id":"bd-jv4w","type":"discovered-from","created_at":"2025-12-19T14:03:19.498933555-07:00","created_by":"daemon"}]}
-{"id":"bd-g1ai","title":"Merge: opal-1767106266450","description":"branch: polecat/opal-1767106266450\ntarget: main\nsource_issue: opal-1767106266450\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T07:03:00.719374-08:00","created_by":"beads/polecats/opal","updated_at":"2025-12-30T15:44:43.359036-08:00","closed_at":"2025-12-30T10:27:23.067611-08:00"}
+{"id":"bd-fy4q","title":"Phase 1.2 follow-up: Clarify format storage","description":"Phase 1.2 created the bdt executable structure but issues.toon is currently stored in JSONL format, not TOON format.\n\nThis is intentional for now:\n- Phase 1.2 (bd-jv4w): Just infrastructure - separate binary, separate directory\n- Phase 1.3 (bd-j0tr): Implement actual TOON encoding/writing\n\nFor now, keep as-is: filename '.toon' signals intent, content is JSONL (interim format). Phase 1.3 will switch to actual TOON.","status":"hooked","priority":3,"issue_type":"task","created_at":"2025-12-19T14:03:19.491040345-07:00","updated_at":"2025-12-30T15:55:53.184504-08:00","dependencies":[{"issue_id":"bd-fy4q","depends_on_id":"bd-jv4w","type":"discovered-from","created_at":"2025-12-19T14:03:19.498933555-07:00","created_by":"daemon"}]}
+{"id":"bd-g1ai","title":"Merge: opal-1767106266450","description":"branch: polecat/opal-1767106266450\ntarget: main\nsource_issue: opal-1767106266450\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T07:03:00.719374-08:00","created_by":"beads/polecats/opal","updated_at":"2025-12-30T10:27:23.067611-08:00","closed_at":"2025-12-30T10:27:23.067611-08:00","close_reason":"Branch no longer exists on remote - stale MR"}
 {"id":"bd-g4b4","title":"bd close hooks: context check and notifications","description":"Add hook system to bd close for notifications and custom actions.\n\n## Scope (MVP)\n\nImplement **command hooks only** for bd close. Deferred: notify, webhook types.\n\n## Implementation\n\n### 1. Config Schema\n\nAdd to internal/configfile/config.go:\n\n```go\ntype HooksConfig struct {\n    OnClose []HookEntry `yaml:\"on_close,omitempty\"`\n}\n\ntype HookEntry struct {\n    Command string `yaml:\"command\"`           // Shell command to run\n    Name    string `yaml:\"name,omitempty\"`    // Optional display name\n}\n```\n\nAdd `Hooks HooksConfig` field to Config struct.\n\n### 2. Hook Execution\n\nCreate internal/hooks/close_hooks.go:\n\n```go\nfunc RunCloseHooks(ctx context.Context, cfg *configfile.Config, issue *types.Issue) error {\n    for _, hook := range cfg.Hooks.OnClose {\n        cmd := exec.CommandContext(ctx, \"sh\", \"-c\", hook.Command)\n        cmd.Env = append(os.Environ(),\n            \"BEAD_ID=\"+issue.ID,\n            \"BEAD_TITLE=\"+issue.Title,\n            \"BEAD_TYPE=\"+string(issue.IssueType),\n            \"BEAD_PRIORITY=\"+strconv.Itoa(issue.Priority),\n            \"BEAD_CLOSE_REASON=\"+issue.CloseReason,\n        )\n        cmd.Stdout = os.Stdout\n        cmd.Stderr = os.Stderr\n        if err := cmd.Run(); err \\!= nil {\n            // Log warning but dont fail the close\n            fmt.Fprintf(os.Stderr, \"Warning: close hook %q failed: %v\\n\", hook.Name, err)\n        }\n    }\n    return nil\n}\n```\n\n### 3. Integration Point\n\nIn cmd/bd/close.go, after successful close:\n\n```go\n// Run close hooks\nif cfg := configfile.Load(); cfg \\!= nil {\n    hooks.RunCloseHooks(ctx, cfg, closedIssue)\n}\n```\n\n### 4. Example Config\n\n```yaml\n# .beads/config.yaml\nhooks:\n  on_close:\n    - name: show-next\n      command: bd ready --limit 1\n    - name: context-check  \n      command: echo \"Issue $BEAD_ID closed. Check context if nearing limit.\"\n```\n\n## Environment Variables\n\n| Variable | Description |\n|----------|-------------|\n| BEAD_ID | Issue ID (e.g., bd-abc1) |\n| BEAD_TITLE | Issue title |\n| BEAD_TYPE | Issue type (task, bug, feature, etc.) |\n| BEAD_PRIORITY | Priority (0-4) |\n| BEAD_CLOSE_REASON | Close reason if provided |\n\n## Testing\n\nAdd test in internal/hooks/close_hooks_test.go:\n- Test hook execution with mock config\n- Test env vars are set correctly\n- Test hook failure doesnt block close\n\n## Files to Create/Modify\n\n1. **Create:** internal/hooks/close_hooks.go\n2. **Create:** internal/hooks/close_hooks_test.go  \n3. **Modify:** internal/configfile/config.go (add HooksConfig)\n4. **Modify:** cmd/bd/close.go (call RunCloseHooks)\n5. **Modify:** docs/CONFIG.md (document hooks config)\n\n## Out of Scope (Future)\n\n- notify hook type (gt mail integration)\n- webhook type (HTTP POST)\n- on_create, on_update hooks\n- Hook timeout configuration\n- Parallel hook execution","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-22T17:03:56.183461-08:00","updated_at":"2025-12-23T13:38:15.898746-08:00","closed_at":"2025-12-23T13:38:15.898746-08:00","dependencies":[{"issue_id":"bd-g4b4","depends_on_id":"bd-iz5t","type":"parent-child","created_at":"2025-12-23T12:44:07.811793-08:00","created_by":"daemon"}]}
-{"id":"bd-g6m5","title":"Code smell: Mixed daemon/direct mode logic throughout commands","description":"Most commands duplicate logic for both daemon and direct modes:\n\n```go\nif daemonClient != nil {\n    // Daemon implementation\n} else {\n    // Direct implementation\n}\n```\n\nThis pattern appears multiple times within the same function in show.go, list.go, and other commands.\n\n**Problem:**\n- Doubles the code paths to test\n- Changes to data retrieval require updates in two places\n- Difficult to reason about behavior\n\n**Acceptance Criteria:**\n- [ ] Create StorageAccessor interface for both modes\n- [ ] Use strategy pattern for daemon vs direct operations\n- [ ] Centralize dispatching logic\n- [ ] Reduce code duplication\n- [ ] Tests pass","status":"hooked","priority":3,"issue_type":"chore","created_at":"2025-12-28T18:59:31.571393-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-30T15:44:43.359727-08:00","dependencies":[{"issue_id":"bd-g6m5","depends_on_id":"bd-ox1o","type":"blocks","created_at":"2025-12-28T19:00:23.716024-08:00","created_by":"daemon"}]}
+{"id":"bd-g6m5","title":"Code smell: Mixed daemon/direct mode logic throughout commands","description":"Most commands duplicate logic for both daemon and direct modes:\n\n```go\nif daemonClient != nil {\n    // Daemon implementation\n} else {\n    // Direct implementation\n}\n```\n\nThis pattern appears multiple times within the same function in show.go, list.go, and other commands.\n\n**Problem:**\n- Doubles the code paths to test\n- Changes to data retrieval require updates in two places\n- Difficult to reason about behavior\n\n**Acceptance Criteria:**\n- [ ] Create StorageAccessor interface for both modes\n- [ ] Use strategy pattern for daemon vs direct operations\n- [ ] Centralize dispatching logic\n- [ ] Reduce code duplication\n- [ ] Tests pass","status":"hooked","priority":3,"issue_type":"chore","created_at":"2025-12-28T18:59:31.571393-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-30T15:55:53.18592-08:00","dependencies":[{"issue_id":"bd-g6m5","depends_on_id":"bd-ox1o","type":"blocks","created_at":"2025-12-28T19:00:23.716024-08:00","created_by":"daemon"}]}
 {"id":"bd-g7eq","title":"Agent beads: structured labels for filtering","description":"## Agent Beads Need Queryable Labels\n\nCurrently agent beads have role_type/rig in description text, not as labels. This breaks @group resolution in gt mail.\n\n## Current State\n\n```json\n{\n  \"id\": \"gt-gastown-witness\",\n  \"issue_type\": \"agent\",\n  \"description\": \"...\\\\nrole_type: witness\\\\nrig: gastown\\\\n...\"\n}\n```\n\nCannot query: `bd list --type=agent --label=role_type:witness` returns nothing.\n\n## Required\n\nAgent bead creation should add labels:\n- `role_type:\u003ctype\u003e` (witness, refinery, crew, polecat, dog, mayor, deacon)\n- `rig:\u003crig\u003e` (gastown, beads, or \"town\" for town-level)\n\n## Where to Fix\n\ngt polecat/crew/agent creation commands should add labels:\n```bash\nbd create --type=agent ... --labels=\"role_type:witness,rig:gastown\"\n```\n\n## Queries Enabled\n\n```bash\nbd list --type=agent --label=role_type:witness    # All witnesses\nbd list --type=agent --label=rig:gastown          # All gastown agents\nbd list --type=agent --label=role_type:dog        # All dogs\n```\n\n## Acceptance\n- New agent beads created with role_type/rig labels\n- Existing agent beads backfilled (one-time script)\n- @group patterns work in gt mail router","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-29T20:47:33.950733-08:00","created_by":"gastown/crew/joe","updated_at":"2025-12-29T21:16:00.746383-08:00","closed_at":"2025-12-29T21:16:00.746383-08:00","close_reason":"Implemented: role_type/rig labels for agent beads, auto-labeling on create/update, backfill command"}
 {"id":"bd-g9eu","title":"Investigate TestRoutingIntegration failure","description":"TestRoutingIntegration/maintainer_with_SSH_remote failed during pre-commit check with \"expected role maintainer, got contributor\".\nThis occurred while running `go test -short ./...` on darwin/arm64.\nThe failure appears unrelated to storage/sqlite changes.\nNeed to investigate if this is a flaky test or environmental issue.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-11-20T15:55:19.337094-08:00","updated_at":"2025-12-23T23:49:49.11706-08:00","closed_at":"2025-12-23T23:49:49.11706-08:00"}
 {"id":"bd-gfo3","title":"Merge: bd-ykd9","description":"branch: polecat/Doctor\ntarget: main\nsource_issue: bd-ykd9\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-23T13:34:43.778808-08:00","updated_at":"2025-12-23T19:12:08.353427-08:00","closed_at":"2025-12-23T19:12:08.353427-08:00"}
@@ -382,7 +382,7 @@
 {"id":"bd-gqxd","title":"Enrich MutationEvent with title and assignee","description":"Current MutationEvent only has IssueID, no context. Add Title and Assignee fields so activity feeds can display meaningful info without extra lookups. Emit these fields when creating mutation events in server_core.go.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-23T16:26:34.907259-08:00","updated_at":"2025-12-23T16:39:39.229462-08:00","closed_at":"2025-12-23T16:39:39.229462-08:00"}
 {"id":"bd-gr4q","title":"Gate await fields cleared by auto-flush/auto-import cycle","description":"## Problem\n\nWhen creating a gate with `--await` fields (e.g., `gh:run:123`), the await_type and await_id are initially stored correctly in the SQLite database. However, they get cleared (set to empty strings) during subsequent bd commands due to the auto-flush/auto-import cycle.\n\n## Reproduction Steps\n\n1. Create a gate with await:\n   ```\n   bd gate create --molecule test-mol --await gh:run:20517738002\n   ```\n   Output shows correct `await_type: gh:run, await_id: 20517738002`\n\n2. Check database - fields are present\n\n3. Run any bd command (e.g., `bd list`)\n\n4. Check database again - await_type and await_id are now empty\n\n## Root Cause\n\nGates are wisps (ephemeral issues). During the auto-flush cycle:\n1. Auto-flush exports issues to JSONL (filtering out wisps)\n2. Auto-import reads JSONL and updates DB rows\n3. The update clears fields that weren't in the JSONL (including await fields)\n\n## Workaround\n\nUsing `--no-auto-import --no-auto-flush` flags preserves the fields, but this isn't practical for normal use.\n\n## Impact\n\nGitHub gate evaluation (`bd gate eval`) cannot work because by the time eval runs, the await fields have been cleared.\n\n## Suggested Fix\n\nEither:\n1. Don't clear await fields during auto-import if they weren't in the source\n2. Store wisp fields separately from the main JSONL export\n3. Include wisps in export but filter them at sync time","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-25T22:59:11.309657-08:00","updated_at":"2025-12-25T23:20:20.33151-08:00","closed_at":"2025-12-25T23:20:20.33151-08:00"}
 {"id":"bd-gxq","title":"Simplify bd onboard to minimal AGENTS.md snippet pointing to bd prime","description":"## Context\nGH#604 raised concerns about bd onboard bloating AGENTS.md with ~100+ lines of static instructions that:\n- Load every session whether beads is being used or not\n- Get stale when bd upgrades\n- Waste tokens\n\n## Solution\nSimplify `bd onboard` to output a minimal snippet (~2 lines) that points to `bd prime`:\n\n```markdown\n## Issue Tracking\nThis project uses beads (`bd`) for issue tracking.\nRun `bd prime` for workflow context, or hooks auto-inject it.\n```\n\n## Rationale\n- `bd prime` is dynamic, concise (~80 lines), and always matches installed bd version\n- Hooks already auto-inject `bd prime` at session start when .beads/ detected\n- AGENTS.md only needs to mention beads exists, not contain full instructions\n\n## Implementation\n1. Update `cmd/bd/onboard.go` to output minimal snippet\n2. Keep `--output` flag for BD_GUIDE.md generation (may still be useful)\n3. Update help text to explain the new approach","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T11:42:38.604891-08:00","updated_at":"2025-12-18T11:47:28.020419-08:00","closed_at":"2025-12-18T11:47:28.020419-08:00"}
-{"id":"bd-h048","title":"Refactor sync_test to use direct import logic","description":"In cmd/bd/sync_test.go:444, there's a TODO to refactor the test to use direct import logic instead of subprocess calls. This would make the test more reliable and faster.\n\nFile: cmd/bd/sync_test.go:444","status":"closed","priority":4,"issue_type":"chore","assignee":"beads/polecats/garnet","created_at":"2025-12-28T16:32:55.612958-08:00","created_by":"stevey","updated_at":"2025-12-30T16:00:09.642672-08:00","closed_at":"2025-12-30T16:00:09.642672-08:00","close_reason":"Refactored test to use direct import logic via importIssuesCore instead of subprocess. Test now passes."}
+{"id":"bd-h048","title":"Refactor sync_test to use direct import logic","description":"In cmd/bd/sync_test.go:444, there's a TODO to refactor the test to use direct import logic instead of subprocess calls. This would make the test more reliable and faster.\n\nFile: cmd/bd/sync_test.go:444","status":"closed","priority":4,"issue_type":"chore","assignee":"beads/polecats/garnet","created_at":"2025-12-28T16:32:55.612958-08:00","created_by":"stevey","updated_at":"2025-12-30T16:04:42.158963-08:00","closed_at":"2025-12-30T16:00:09.642672-08:00"}
 {"id":"bd-h0we","title":"Review SQLite indexes and scaling bottlenecks","description":"Audit the beads SQLite schema for:\n\n## Index Review\n- Are all frequently-queried columns indexed?\n- Are compound indexes needed for common query patterns?\n- Any missing indexes on foreign keys or filter columns?\n\n## Scaling Bottlenecks\n- How does performance degrade with 10k, 100k, 1M issues?\n- Full table scans in hot paths?\n- JSONL export/import performance at scale\n- Transaction contention in multi-agent scenarios\n\n## Common Query Patterns to Optimize\n- bd ready (status + blocked_by resolution)\n- bd list with filters (status, type, priority, labels)\n- bd show with dependency graph traversal\n- bd sync import/export\n\n## Deliverables\n- Document current indexes\n- Identify missing indexes\n- Benchmark key operations at scale\n- Recommend schema improvements","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-21T23:41:06.481881-08:00","updated_at":"2025-12-22T22:59:25.178175-08:00","closed_at":"2025-12-22T22:59:25.178175-08:00"}
 {"id":"bd-h27p","title":"Merge: bd-g4b4","description":"branch: polecat/Hooker\ntarget: main\nsource_issue: bd-g4b4\nrig: beads","status":"closed","priority":3,"issue_type":"merge-request","created_at":"2025-12-23T13:38:50.707153-08:00","updated_at":"2025-12-23T19:12:08.357806-08:00","closed_at":"2025-12-23T19:12:08.357806-08:00"}
 {"id":"bd-h4tj","title":"Refinery Patrol","description":"Merge queue processor patrol loop with verification gates.","status":"open","priority":2,"issue_type":"molecule","created_at":"2025-12-27T19:24:07.068355-08:00","created_by":"deacon","updated_at":"2025-12-27T19:24:07.068355-08:00"}
@@ -394,11 +394,11 @@
 {"id":"bd-haxi","title":"Restart running daemons","description":"Kill and restart any running bd daemons to pick up new version: pkill -f 'bd daemon' \u0026\u0026 bd daemon --start","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-21T13:52:33.066262-08:00","updated_at":"2025-12-21T13:53:49.757078-08:00","deleted_at":"2025-12-21T13:53:49.757078-08:00","deleted_by":"stevey","delete_reason":"manual delete","original_type":"task"}
 {"id":"bd-haze","title":"Fix beads-9yc: pinned column missing from schema. gt mail...","description":"Fix beads-9yc: pinned column missing from schema. gt mail send fails because some beads DBs lack the pinned column. Add migration to ensure it exists.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T15:05:33.394801-08:00","updated_at":"2025-12-21T15:26:35.171757-08:00","closed_at":"2025-12-21T15:26:35.171757-08:00"}
 {"id":"bd-hhv3","title":"Test and document molecular chemistry commands","description":"## Context\n\nImplemented the molecular chemistry UX commands per the design docs:\n- gastown/mayor/rig/docs/molecular-chemistry.md\n- gastown/mayor/rig/docs/chemistry-design-changes.md\n\nCommit: cadf798b\n\n## New Commands to Test\n\n| Command | Purpose |\n|---------|---------|\n| `bd pour \u003cproto\u003e` | Instantiate proto as persistent mol |\n| `bd wisp create \u003cproto\u003e` | Instantiate proto as ephemeral wisp |\n| `bd hook [--agent]` | Inspect what's on an agent's hook |\n\n## Enhanced Commands to Test\n\n| Command | Changes |\n|---------|---------|\n| `bd mol spawn --pour` | New flag, `--persistent` deprecated |\n| `bd mol bond --pour` | Force liquid phase on wisp target |\n| `bd pin --for \u003cagent\u003e --start` | Chemistry workflow support |\n\n## Test Scenarios\n\n1. **bd pour**: Create persistent mol from a proto\n   - Verify creates in .beads/ (not .beads-wisp/)\n   - Verify variable substitution works\n   - Verify --dry-run works\n\n2. **bd wisp create**: Create ephemeral wisp from proto\n   - Verify creates in .beads-wisp/\n   - Verify bd wisp list shows it\n   - Verify bd mol squash works\n   - Verify bd mol burn works\n\n3. **bd hook**: Inspect pinned work\n   - Pin something, verify bd hook shows it\n   - Test --agent flag\n   - Test --json output\n\n4. **bd pin --for**: Assign work to agent\n   - Verify sets pinned=true\n   - Verify sets assignee\n   - Verify --start sets status=in_progress\n\n5. **bd mol bond --pour**: Force liquid on wisp target\n   - Bond a proto to a wisp with --pour\n   - Verify spawned issues are in .beads/\n\n## Documentation\n\n- Update CLAUDE.md with new commands\n- Add examples to --help output (already done)\n- Consider adding to docs/CLI_REFERENCE.md\n\n## Code Review\n\n- Check for edge cases\n- Verify error messages are helpful\n- Ensure --json output is consistent","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-22T02:22:10.906646-08:00","updated_at":"2025-12-22T02:55:37.983703-08:00","closed_at":"2025-12-22T02:55:37.983703-08:00"}
-{"id":"bd-hj0s","title":"Add 'convoy' issue type with reactive completion","description":"Add convoy as a new issue type with reactive completion semantics.\n\nBehavior:\n- Convoy has list of tracked issues (via 'tracks' relation)\n- When all tracked issues close (including wontfix), convoy auto-closes\n- Supports cross-prefix tracking (convoy in hq-* tracks gt-*, bd-*)\n\nImplementation:\n- New type: convoy\n- Reactive completion trigger on tracked issue closure\n- Query support: 'bd list --type=convoy'\n\nRelated: hq-7h8jx (Convoy System epic in town beads)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-29T18:47:02.011011-08:00","created_by":"mayor","updated_at":"2025-12-30T15:44:43.361813-08:00","closed_at":"2025-12-30T00:05:13.515078-08:00","close_reason":"Implemented convoy type with reactive completion","dependencies":[{"issue_id":"bd-hj0s","depends_on_id":"bd-3roq","type":"blocks","created_at":"2025-12-29T18:47:10.59211-08:00","created_by":"daemon"}]}
+{"id":"bd-hj0s","title":"Add 'convoy' issue type with reactive completion","description":"Add convoy as a new issue type with reactive completion semantics.\n\nBehavior:\n- Convoy has list of tracked issues (via 'tracks' relation)\n- When all tracked issues close (including wontfix), convoy auto-closes\n- Supports cross-prefix tracking (convoy in hq-* tracks gt-*, bd-*)\n\nImplementation:\n- New type: convoy\n- Reactive completion trigger on tracked issue closure\n- Query support: 'bd list --type=convoy'\n\nRelated: hq-7h8jx (Convoy System epic in town beads)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-29T18:47:02.011011-08:00","created_by":"mayor","updated_at":"2025-12-30T15:55:53.186869-08:00","closed_at":"2025-12-30T00:05:13.515078-08:00","dependencies":[{"issue_id":"bd-hj0s","depends_on_id":"bd-3roq","type":"blocks","created_at":"2025-12-29T18:47:10.59211-08:00","created_by":"daemon"}]}
 {"id":"bd-hkr6","title":"GH#518: Document bd setup command","description":"bd setup is undiscoverable. Add to README/docs. Currently only findable by grepping source. See GitHub issue #518.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:54.664668-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-hlsw","title":"Add sync resilience guardrails for forced pushes and prefix mismatches","description":"Beads can get into unrecoverable sync states when remote forces pushes occur (e.g., rebases) combined with prefix mismatches from multi-worker scenarios. Add detection, prevention, and auto-recovery features to handle this gracefully.","status":"open","priority":2,"issue_type":"epic","created_at":"2025-12-14T10:40:14.872875259-07:00","updated_at":"2025-12-14T10:40:14.872875259-07:00"}
-{"id":"bd-hlsw.3","title":"Auto-recovery mode (bd sync --auto-recover)","description":"Add bd sync --auto-recover flag that: detects problematic sync state, backs up .beads/issues.db with timestamp, rebuilds DB from JSONL atomically, verifies consistency, reports what was fixed. Provides safety valve when sync integrity fails.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-14T10:40:20.599836875-07:00","updated_at":"2025-12-30T15:44:43.352476-08:00","closed_at":"2025-12-30T07:02:42.636957-08:00","close_reason":"Implemented --auto-recover flag with detection, backup, rebuild, verify, and reporting. Added tests.","dependencies":[{"issue_id":"bd-hlsw.3","depends_on_id":"bd-hlsw","type":"parent-child","created_at":"2025-12-14T10:40:20.600435888-07:00","created_by":"daemon"}]}
-{"id":"bd-hlsw.4","title":"Sync branch integrity guards","description":"Track sync branch parent commit. If sync branch was force-pushed, warn user and require confirmation before proceeding. Add option to reset to remote if user accepts rebase. Prevents silent corruption from forced pushes.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-14T10:40:20.645402352-07:00","updated_at":"2025-12-30T15:44:43.348683-08:00","dependencies":[{"issue_id":"bd-hlsw.4","depends_on_id":"bd-hlsw","type":"parent-child","created_at":"2025-12-14T10:40:20.646425761-07:00","created_by":"daemon"}]}
+{"id":"bd-hlsw.3","title":"Auto-recovery mode (bd sync --auto-recover)","description":"Add bd sync --auto-recover flag that: detects problematic sync state, backs up .beads/issues.db with timestamp, rebuilds DB from JSONL atomically, verifies consistency, reports what was fixed. Provides safety valve when sync integrity fails.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-14T10:40:20.599836875-07:00","updated_at":"2025-12-30T15:55:53.187699-08:00","closed_at":"2025-12-30T07:02:42.636957-08:00","dependencies":[{"issue_id":"bd-hlsw.3","depends_on_id":"bd-hlsw","type":"parent-child","created_at":"2025-12-14T10:40:20.600435888-07:00","created_by":"daemon"}]}
+{"id":"bd-hlsw.4","title":"Sync branch integrity guards","description":"Track sync branch parent commit. If sync branch was force-pushed, warn user and require confirmation before proceeding. Add option to reset to remote if user accepts rebase. Prevents silent corruption from forced pushes.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-14T10:40:20.645402352-07:00","updated_at":"2025-12-30T15:55:53.188497-08:00","dependencies":[{"issue_id":"bd-hlsw.4","depends_on_id":"bd-hlsw","type":"parent-child","created_at":"2025-12-14T10:40:20.646425761-07:00","created_by":"daemon"}]}
 {"id":"bd-hlyr","title":"Merge: bd-m8ro","description":"branch: polecat/max\ntarget: main\nsource_issue: bd-m8ro\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-23T20:45:40.218445-08:00","updated_at":"2025-12-23T21:21:57.69886-08:00","closed_at":"2025-12-23T21:21:57.69886-08:00"}
 {"id":"bd-hnkg","title":"GH#540: Add silent quick-capture mode (bd q)","description":"Add bd q alias for quick capture that outputs only issue ID. Useful for piping/scripting. See GitHub issue #540.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:03:38.260135-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"}
 {"id":"bd-hobo","title":"Distinct prefixes for protos, molecules, wisps","description":"Template/workflow entities should have visually distinct prefixes from regular issues.\n\n**Problem:**\n- Protos (bd-7bs4) look like regular issues - invites squashing\n- Molecules (poured instances) also use bd- prefix\n- Wisps are in separate DB but still use bd- when referenced\n\n**Proposed Prefixes:**\n- `proto-` for templates (e.g., proto-release, proto-review)\n- `mol-` for active molecules (poured from protos)\n- `wisp-` for ephemeral wisps (vapor phase)\n\n**Benefits:**\n- Instant visual recognition of entity type\n- Prevents accidental modification of templates\n- Clear lifecycle: proto → mol → wisp → digest\n\n**Implementation options:**\n1. Separate databases with different prefixes\n2. Issue type determines prefix generation\n3. Naming convention enforced by bd pour/wisp commands","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-24T16:45:24.940809-08:00","updated_at":"2025-12-25T02:04:52.459233-08:00","closed_at":"2025-12-25T02:04:52.459233-08:00","labels":["workflow"]}
@@ -411,7 +411,7 @@
 {"id":"bd-i0rx","title":"Merge: bd-ao0s","description":"branch: polecat/rictus\ntarget: main\nsource_issue: bd-ao0s\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-20T01:13:42.716658-08:00","updated_at":"2025-12-20T23:17:26.993744-08:00","closed_at":"2025-12-20T23:17:26.993744-08:00"}
 {"id":"bd-i5l","title":"Witness Patrol","description":"Per-rig worker monitor patrol loop with progressive nudging.","status":"tombstone","priority":2,"issue_type":"molecule","created_at":"2025-12-26T21:20:47.650732-08:00","created_by":"deacon","updated_at":"2025-12-27T00:10:54.176287-08:00","deleted_at":"2025-12-27T00:10:54.176287-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"molecule"}
 {"id":"bd-i7a6","title":"Test actor flag","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-26T20:47:28.470006-08:00","updated_at":"2025-12-28T09:26:06.084894-08:00","closed_at":"2025-12-28T09:26:06.084894-08:00"}
-{"id":"bd-ia3g","title":"BondRef.ProtoID field name is misleading for mol+mol bonds","description":"In bondMolMol, the BondRef.ProtoID field is used to store molecule IDs:\n\n```go\nBondedFrom: append(molA.BondedFrom, types.BondRef{\n    ProtoID:   molB.ID,  // This is a molecule, not a proto\n    ...\n})\n```\n\nThis is semantically confusing since ProtoID suggests it should only hold proto references.\n\n**Options:**\n1. Rename ProtoID to SourceID (breaking change, needs migration)\n2. Add documentation clarifying ProtoID can hold molecule IDs in bond context\n3. Leave as-is, accept the naming is imprecise\n\nLow priority since it's just naming, not functionality.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-21T10:23:00.755067-08:00","updated_at":"2025-12-30T15:44:43.355533-08:00","closed_at":"2025-12-30T00:40:56.399444-08:00","close_reason":"Merged via refinery"}
+{"id":"bd-ia3g","title":"BondRef.ProtoID field name is misleading for mol+mol bonds","description":"In bondMolMol, the BondRef.ProtoID field is used to store molecule IDs:\n\n```go\nBondedFrom: append(molA.BondedFrom, types.BondRef{\n    ProtoID:   molB.ID,  // This is a molecule, not a proto\n    ...\n})\n```\n\nThis is semantically confusing since ProtoID suggests it should only hold proto references.\n\n**Options:**\n1. Rename ProtoID to SourceID (breaking change, needs migration)\n2. Add documentation clarifying ProtoID can hold molecule IDs in bond context\n3. Leave as-is, accept the naming is imprecise\n\nLow priority since it's just naming, not functionality.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-21T10:23:00.755067-08:00","updated_at":"2025-12-30T15:55:53.189244-08:00","closed_at":"2025-12-30T00:40:56.399444-08:00"}
 {"id":"bd-ibl9","title":"Merge: bd-4qfb","description":"branch: polecat/Polish\ntarget: main\nsource_issue: bd-4qfb\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-23T13:37:57.255125-08:00","updated_at":"2025-12-23T19:12:08.352249-08:00","closed_at":"2025-12-23T19:12:08.352249-08:00"}
 {"id":"bd-icfe","title":"gt spawn/crew setup should create .beads/redirect for worktrees","description":"Crew clones and polecats need a .beads/redirect file pointing to the shared beads database (../../mayor/rig/.beads). Currently:\n\n- redirect files can get deleted by git clean\n- not auto-created during gt spawn or worktree setup\n- missing redirects cause 'no beads database found' errors\n\nFound missing in: gastown/joe, beads/zoey (after git clean)\n\nFix options:\n1. gt spawn creates redirect during worktree setup\n2. gt prime regenerates missing redirects\n3. bd commands auto-detect worktree and find shared beads\n\nThis should be standard Gas Town rig configuration.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-21T01:30:26.115872-08:00","updated_at":"2025-12-21T17:51:25.740811-08:00","closed_at":"2025-12-21T17:51:25.740811-08:00"}
 {"id":"bd-icnf","title":"Add bd mol run command (bond + assign + pin)","description":"bd mol run = bond + assign root to caller + pin to startup mail. This is the Gas Town integration point. When agent restarts, check startup mail, find pinned molecule root, query bd ready for next step. Makes molecules immortal.","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-12-20T23:52:17.462882-08:00","updated_at":"2025-12-21T00:07:25.803058-08:00","closed_at":"2025-12-21T00:07:25.803058-08:00","dependencies":[{"issue_id":"bd-icnf","depends_on_id":"bd-ffjt","type":"blocks","created_at":"2025-12-20T23:52:25.871742-08:00","created_by":"daemon"}]}
@@ -426,8 +426,8 @@
 {"id":"bd-ipva","title":"Update go install bd to 0.33.2","description":"Rebuild and install bd to ~/go/bin:\n\n```bash\ngo install ./cmd/bd\n~/go/bin/bd version  # Verify shows 0.33.2\n```\n\nNote: If ~/go/bin is in PATH before /opt/homebrew/bin, this is the version that runs by default.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-21T16:10:13.760715-08:00","updated_at":"2025-12-21T17:29:31.791368-08:00","deleted_at":"2025-12-21T17:29:31.791368-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-iq19","title":"Distill: promote ad-hoc epic to proto","description":"Extract a reusable proto from an existing ad-hoc epic.\n\nCOMMAND: bd mol distill \u003cepic-id\u003e [--as \u003cproto-name\u003e]\n\nBEHAVIOR:\n- Clone the epic and all children as a new proto\n- Set is_template=true on all cloned issues\n- Replace concrete values with {{variable}} placeholders (interactive or --var flags)\n- Add to proto catalog\n\nFLAGS:\n- --as NAME: Custom proto ID (default: proto-\u003cepic-id\u003e)\n- --var field=placeholder: Replace value with variable placeholder\n- --interactive: Prompt for each field that looks parameterizable\n- --dry-run: Preview the proto structure\n\nEXAMPLE:\n  bd mol distill bd-o5xe --as proto-feature-workflow \\\n    --var title=feature_name \\\n    --var assignee=worker\n\nUSE CASES:\n- Team develops good workflow organically, wants to reuse it\n- Capture tribal knowledge as executable templates\n- Create starting point for similar future work\n\nThe reverse of spawn: instead of proto → molecule, it's molecule → proto.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-21T01:05:07.953538-08:00","updated_at":"2025-12-21T10:31:56.814246-08:00","closed_at":"2025-12-21T10:31:56.814246-08:00","dependencies":[{"issue_id":"bd-iq19","depends_on_id":"bd-o5xe","type":"parent-child","created_at":"2025-12-21T01:05:16.495774-08:00","created_by":"daemon"},{"issue_id":"bd-iq19","depends_on_id":"bd-rnnr","type":"blocks","created_at":"2025-12-21T01:05:16.560404-08:00","created_by":"daemon"}]}
 {"id":"bd-iq7n","title":"Audit and fix JSONL filename mismatches across all repo clones","description":"## Problem\n\nMultiple clones of repos are configured with different JSONL filenames (issues.jsonl vs beads.jsonl), causing:\n1. JSONL files to be resurrected after deletion (one clone pushes issues.jsonl, another pushes beads.jsonl)\n2. Agents unable to see issues filed by other agents after sync\n3. Merge conflicts and data inconsistencies\n\n## Root Cause\n\nWhen repos were \"bd doctored\" or initialized at different times, some got issues.jsonl (old default) and others got beads.jsonl (Beads repo specific). These clones push their respective files, creating duplicates.\n\n## Task\n\nScan all repo clones under ~/src/ (1-2 levels deep) and standardize their JSONL configuration.\n\n### Step 1: Find all beads-enabled repos\n\n```bash\n# Find all directories named 'beads' at levels 1-2 under ~/src/\nfind ~/src -maxdepth 2 -type d -name beads\n```\n\n### Step 2: For each repo found, check configuration\n\nFor each directory from Step 1, check:\n- Does `.beads/metadata.json` exist?\n- What is the `jsonl_export` value?\n- What JSONL files actually exist in `.beads/`?\n- Are there multiple JSONL files (problem!)?\n\n### Step 3: Create audit report\n\nGenerate a report showing:\n```\nRepo Path                           | Config        | Actual Files           | Status\n----------------------------------- | ------------- | ---------------------- | --------\n~/src/beads                         | beads.jsonl   | beads.jsonl            | OK\n~/src/dave/beads                    | issues.jsonl  | issues.jsonl           | MISMATCH\n~/src/emma/beads                    | issues.jsonl  | issues.jsonl, beads.jsonl | DUPLICATE!\n```\n\n### Step 4: Determine canonical name for each repo\n\nFor repos that are the SAME git repository (check `git remote -v`):\n- Group them together\n- Determine which JSONL filename should be canonical (majority wins, or beads.jsonl for the beads repo itself)\n- List which clones need to be updated\n\n### Step 5: Generate fix script\n\nCreate a script that for each mismatched clone:\n1. Updates `.beads/metadata.json` to use the canonical name\n2. If JSONL file needs renaming: `git mv .beads/old.jsonl .beads/new.jsonl`\n3. Removes any duplicate JSONL files: `git rm .beads/duplicate.jsonl`\n4. Commits the change\n5. Syncs: `bd sync`\n\n### Expected Output\n\n1. Audit report showing all repos and their config status\n2. List of repos grouped by git remote (same repository)\n3. Fix script or manual instructions for standardizing each repo\n4. Verification that after fixes, all clones of the same repo use the same JSONL filename\n\n### Edge Cases\n\n- Handle repos without metadata.json (use default discovery)\n- Handle repos with no git remote (standalone/local)\n- Handle repos that are not git repositories\n- Don't modify repos with uncommitted changes (warn instead)\n\n### Success Criteria\n\n- All clones of the same git repository use the same JSONL filename\n- No duplicate JSONL files in any repo\n- All configurations documented in metadata.json\n- bd doctor passes on all repos","status":"tombstone","priority":0,"issue_type":"task","created_at":"2025-11-21T23:58:35.044762-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
-{"id":"bd-ir5t","title":"Merge: quartz-1767106247671","description":"branch: polecat/quartz-1767106247671\ntarget: main\nsource_issue: quartz-1767106247671\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T07:02:08.919103-08:00","created_by":"beads/polecats/quartz","updated_at":"2025-12-30T15:44:43.349476-08:00","closed_at":"2025-12-30T10:27:23.069509-08:00"}
-{"id":"bd-irah","title":"Add refs field for cross-references with relationship type","description":"The refs field enables rich relationships beyond parent/child and depends-on.\n\nStructure:\n  refs: [{id: string, rel: string}]\n\nRelationship types:\n- until: active until target closes\n- caused_by: triggered by target\n- relates_to: general association\n- supersedes: replaces target\n- validates: approval relationship\n\nExample:\n  refs:\n    - id: gt-abc1\n      rel: until\n    - id: hq-xyz9\n      rel: caused_by\n\nEnables:\n- bd show gt-abc1 --refs (what references this?)\n- Conditional state (muted UNTIL issue closes)\n- Audit trails (this event CAUSED_BY that issue)","status":"closed","priority":2,"issue_type":"feature","assignee":"beads/polecats/quartz","created_at":"2025-12-30T15:15:34.948913-08:00","created_by":"gastown/crew/max","updated_at":"2025-12-30T15:51:38.291217-08:00","closed_at":"2025-12-30T15:51:38.291217-08:00","close_reason":"Implemented refs feature: added until/caused-by/validates dependency types and --refs flag to bd show"}
+{"id":"bd-ir5t","title":"Merge: quartz-1767106247671","description":"branch: polecat/quartz-1767106247671\ntarget: main\nsource_issue: quartz-1767106247671\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T07:02:08.919103-08:00","created_by":"beads/polecats/quartz","updated_at":"2025-12-30T10:27:23.069509-08:00","closed_at":"2025-12-30T10:27:23.069509-08:00","close_reason":"Branch no longer exists on remote - stale MR"}
+{"id":"bd-irah","title":"Add refs field for cross-references with relationship type","description":"The refs field enables rich relationships beyond parent/child and depends-on.\n\nStructure:\n  refs: [{id: string, rel: string}]\n\nRelationship types:\n- until: active until target closes\n- caused_by: triggered by target\n- relates_to: general association\n- supersedes: replaces target\n- validates: approval relationship\n\nExample:\n  refs:\n    - id: gt-abc1\n      rel: until\n    - id: hq-xyz9\n      rel: caused_by\n\nEnables:\n- bd show gt-abc1 --refs (what references this?)\n- Conditional state (muted UNTIL issue closes)\n- Audit trails (this event CAUSED_BY that issue)","status":"closed","priority":2,"issue_type":"feature","assignee":"beads/polecats/quartz","created_at":"2025-12-30T15:15:34.948913-08:00","created_by":"gastown/crew/max","updated_at":"2025-12-30T15:59:55.075371-08:00","closed_at":"2025-12-30T15:51:38.291217-08:00"}
 {"id":"bd-is6m","title":"Add gate checking to Deacon patrol loop","description":"Integrate gate checking into Deacon's patrol cycle.\n\n## Patrol Integration\n```go\nfunc (d *Deacon) checkGates(ctx context.Context) {\n    gates, _ := d.store.ListOpenGates(ctx)\n    \n    for _, gate := range gates {\n        // Check timeout\n        if time.Since(gate.CreatedAt) \u003e gate.Timeout {\n            d.notifyWaiters(gate, \"timeout\")\n            d.closeGate(gate, \"timed out\")\n            continue\n        }\n        \n        // Check condition\n        if d.checkCondition(gate.AwaitType, gate.AwaitID) {\n            d.notifyWaiters(gate, \"cleared\")\n            d.closeGate(gate, \"condition met\")\n        }\n    }\n}\n```\n\n## Note\nThis task is in Gas Town (gt), not beads. May need to be moved there.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T11:44:36.839709-08:00","updated_at":"2025-12-23T12:19:44.204647-08:00","closed_at":"2025-12-23T12:19:44.204647-08:00","dependencies":[{"issue_id":"bd-is6m","depends_on_id":"bd-udsi","type":"parent-child","created_at":"2025-12-23T11:44:52.909253-08:00","created_by":"daemon"},{"issue_id":"bd-is6m","depends_on_id":"bd-u66e","type":"blocks","created_at":"2025-12-23T11:44:56.428084-08:00","created_by":"daemon"}]}
 {"id":"bd-it19","title":"Code smell: show.go is 1592 lines - needs splitting","description":"cmd/bd/show.go is 1592 lines mixing data fetching, transformation, output formatting, and thread reconstruction.\n\n**Problem:**\n- Too large to understand and maintain\n- Poor separation of concerns\n- Hard to test individual components\n\n**Acceptance Criteria:**\n- [ ] Extract formatting into show_formatter.go\n- [ ] Extract thread reconstruction into show_threads.go\n- [ ] Each file under 500 lines\n- [ ] No functionality changes\n- [ ] Tests pass","status":"closed","priority":2,"issue_type":"chore","created_at":"2025-12-28T18:59:00.865612-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-28T19:01:18.42196-08:00","closed_at":"2025-12-28T19:01:18.42196-08:00","dependencies":[{"issue_id":"bd-it19","depends_on_id":"bd-ox1o","type":"blocks","created_at":"2025-12-28T19:00:23.61907-08:00","created_by":"daemon"}]}
 {"id":"bd-iutu","title":"Test comment display","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T17:50:24.269413-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-27T17:53:39.950742-08:00","comments":[{"id":5,"issue_id":"bd-iutu","author":"beads/crew/dave","text":"This is a test comment","created_at":"2025-12-28T01:50:30Z"}],"deleted_at":"2025-12-27T17:53:39.950742-08:00","deleted_by":"beads/crew/dave","delete_reason":"manual delete","original_type":"task"}
@@ -438,10 +438,10 @@
 {"id":"bd-j3il","title":"Add bd reset command for clean slate restart","description":"Implement a command to reset beads to a clean starting state.\n\n**Context:** GitHub issue #479 - users sometimes get beads into an invalid state after updates, and there's no clean way to start fresh. The git backup/restore mechanism that protects against accidental deletion also makes it hard to intentionally reset.\n\n**Current workaround** (from maphew):\n```bash\nbd daemons killall\ngit rm .beads/*.jsonl\ngit commit -m 'remove old issues'\nrm .beads/*\nbd init\nbd onboard\n```\n\n**Desired:** A proper `bd reset` command that handles this cleanly and safely.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-13T08:41:34.956552+11:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"}
 {"id":"bd-j4cr","title":"bd cook: waits_for field not preserved in cooked protos","description":"The `waits_for` field in formula steps is not preserved in the cooked proto.\n\n## Formula\n\n```yaml\n- id: aggregate\n  title: Aggregate arm results\n  needs: [survey-workers]\n  waits_for: all-children\n  description: |\n    This is a **fanout gate**...\n```\n\n## Expected\n\nThe cooked proto step should have metadata indicating it's a gate:\n- Label: `gate:all-children` or\n- Field in issue metadata indicating wait behavior\n\n## Actual\n\nThe `waits_for` field is silently ignored. Only the description mentions 'fanout gate'.\n\n## Impact\n\nThe execution engine cannot determine which steps are gates that need to wait\nfor dynamically-bonded children. This breaks the Christmas Ornament pattern\nwhere aggregate steps must wait for all polecat-arm wisps to complete.\n\n## Related\n\nbd-hr39: needs field not converted to step dependencies","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-24T13:51:10.494565-08:00","updated_at":"2025-12-24T13:59:09.932552-08:00","closed_at":"2025-12-24T13:59:09.932552-08:00"}
 {"id":"bd-j6lr","title":"GH#402: Add --parent flag documentation to bd onboard","description":"bd onboard output is missing --parent flag for epic subtasks. Agents guess wrong syntax (--deps parent:). See GitHub issue #402.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:56.594829-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
-{"id":"bd-jbqx","title":"Code smell: Repeated validation patterns could be centralized","description":"Similar validation patterns appear in multiple commands (create.go, show.go, update.go, etc.):\n- Check if resource exists\n- Check if resource is in valid state\n- Validate user input\n- Check permissions\n\n**Problem:**\n- Duplicated validation logic\n- Inconsistent validation between commands\n- Hard to add new validation rules consistently\n\n**Acceptance Criteria:**\n- [ ] Create internal/validation package\n- [ ] Centralize common validation logic\n- [ ] Use composition for validation chains\n- [ ] Update commands to use shared validators\n- [ ] Tests pass","status":"closed","priority":3,"issue_type":"chore","assignee":"beads/polecats/opal","created_at":"2025-12-28T19:00:03.171186-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-30T15:58:50.871474-08:00","closed_at":"2025-12-30T15:58:50.871474-08:00","close_reason":"Implemented composable validators in internal/validation/issue.go with Chain() composition, migrated show_unit_helpers.go to use centralized validators","dependencies":[{"issue_id":"bd-jbqx","depends_on_id":"bd-ox1o","type":"blocks","created_at":"2025-12-28T19:00:23.84458-08:00","created_by":"daemon"}]}
-{"id":"bd-jdz3","title":"Add pager support to bd list","description":"Add pager support following gh cli conventions:\n\nFlags:\n- --no-pager: disable pager for this command\n\nEnvironment variables:\n- BD_PAGER / PAGER: pager program (default: less)\n- BD_NO_PAGER: disable pager globally\n\nBehavior:\n- Auto-enable pager when output exceeds terminal height\n- Respect LESS env var for pager options\n- Disable pager when stdout is not a TTY (pipes/scripts)","notes":"## Implementation Plan\n\n### Dependencies\n```go\nimport \"github.com/muesli/termenv\" // or golang.org/x/term\n```\n\n### Code Changes\n\n1. **Add pager helper** (internal/ui/pager.go):\n```go\nfunc ToPager(content string) error {\n    // Check BD_NO_PAGER or --no-pager\n    if os.Getenv(\"BD_NO_PAGER\") \\!= \"\" {\n        fmt.Print(content)\n        return nil\n    }\n    \n    // Get pager command\n    pager := os.Getenv(\"BD_PAGER\")\n    if pager == \"\" {\n        pager = os.Getenv(\"PAGER\")\n    }\n    if pager == \"\" {\n        pager = \"less\"\n    }\n    \n    // Check if content exceeds terminal height\n    // If not, just print directly\n    \n    // Pipe to pager\n    cmd := exec.Command(pager)\n    cmd.Stdin = strings.NewReader(content)\n    cmd.Stdout = os.Stdout\n    cmd.Stderr = os.Stderr\n    return cmd.Run()\n}\n```\n\n2. **Add --no-pager flag** (cmd/bd/list.go init):\n```go\nlistCmd.Flags().Bool(\"no-pager\", false, \"Disable pager output\")\n```\n\n3. **Use pager in list output** (end of Run):\n```go\nif \\!noPager \u0026\u0026 isTerminal(os.Stdout) {\n    ui.ToPager(output.String())\n} else {\n    fmt.Print(output.String())\n}\n```\n\n### Environment Variables\n- `BD_PAGER`: pager program (overrides PAGER)\n- `BD_NO_PAGER`: set to any value to disable\n- `PAGER`: fallback pager\n- `LESS`: passed through for less options\n\n### Testing\n- `bd list` pipes to pager when output \u003e terminal height\n- `bd list --no-pager` prints directly\n- `BD_NO_PAGER=1 bd list` prints directly\n- `bd list | cat` auto-disables pager (not a TTY)","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-29T15:25:09.109258-08:00","created_by":"stevey","updated_at":"2025-12-30T15:44:43.356435-08:00","closed_at":"2025-12-30T00:41:45.168318-08:00","close_reason":"Merged via refinery"}
+{"id":"bd-jbqx","title":"Code smell: Repeated validation patterns could be centralized","description":"Similar validation patterns appear in multiple commands (create.go, show.go, update.go, etc.):\n- Check if resource exists\n- Check if resource is in valid state\n- Validate user input\n- Check permissions\n\n**Problem:**\n- Duplicated validation logic\n- Inconsistent validation between commands\n- Hard to add new validation rules consistently\n\n**Acceptance Criteria:**\n- [ ] Create internal/validation package\n- [ ] Centralize common validation logic\n- [ ] Use composition for validation chains\n- [ ] Update commands to use shared validators\n- [ ] Tests pass","status":"closed","priority":3,"issue_type":"chore","assignee":"beads/polecats/opal","created_at":"2025-12-28T19:00:03.171186-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-30T15:59:55.076076-08:00","closed_at":"2025-12-30T15:58:50.871474-08:00","dependencies":[{"issue_id":"bd-jbqx","depends_on_id":"bd-ox1o","type":"blocks","created_at":"2025-12-28T19:00:23.84458-08:00","created_by":"daemon"}]}
+{"id":"bd-jdz3","title":"Add pager support to bd list","description":"Add pager support following gh cli conventions:\n\nFlags:\n- --no-pager: disable pager for this command\n\nEnvironment variables:\n- BD_PAGER / PAGER: pager program (default: less)\n- BD_NO_PAGER: disable pager globally\n\nBehavior:\n- Auto-enable pager when output exceeds terminal height\n- Respect LESS env var for pager options\n- Disable pager when stdout is not a TTY (pipes/scripts)","notes":"## Implementation Plan\n\n### Dependencies\n```go\nimport \"github.com/muesli/termenv\" // or golang.org/x/term\n```\n\n### Code Changes\n\n1. **Add pager helper** (internal/ui/pager.go):\n```go\nfunc ToPager(content string) error {\n    // Check BD_NO_PAGER or --no-pager\n    if os.Getenv(\"BD_NO_PAGER\") \\!= \"\" {\n        fmt.Print(content)\n        return nil\n    }\n    \n    // Get pager command\n    pager := os.Getenv(\"BD_PAGER\")\n    if pager == \"\" {\n        pager = os.Getenv(\"PAGER\")\n    }\n    if pager == \"\" {\n        pager = \"less\"\n    }\n    \n    // Check if content exceeds terminal height\n    // If not, just print directly\n    \n    // Pipe to pager\n    cmd := exec.Command(pager)\n    cmd.Stdin = strings.NewReader(content)\n    cmd.Stdout = os.Stdout\n    cmd.Stderr = os.Stderr\n    return cmd.Run()\n}\n```\n\n2. **Add --no-pager flag** (cmd/bd/list.go init):\n```go\nlistCmd.Flags().Bool(\"no-pager\", false, \"Disable pager output\")\n```\n\n3. **Use pager in list output** (end of Run):\n```go\nif \\!noPager \u0026\u0026 isTerminal(os.Stdout) {\n    ui.ToPager(output.String())\n} else {\n    fmt.Print(output.String())\n}\n```\n\n### Environment Variables\n- `BD_PAGER`: pager program (overrides PAGER)\n- `BD_NO_PAGER`: set to any value to disable\n- `PAGER`: fallback pager\n- `LESS`: passed through for less options\n\n### Testing\n- `bd list` pipes to pager when output \u003e terminal height\n- `bd list --no-pager` prints directly\n- `BD_NO_PAGER=1 bd list` prints directly\n- `bd list | cat` auto-disables pager (not a TTY)","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-29T15:25:09.109258-08:00","created_by":"stevey","updated_at":"2025-12-30T15:55:53.190812-08:00","closed_at":"2025-12-30T00:41:45.168318-08:00"}
 {"id":"bd-jgxi","title":"Auto-migrate database on CLI version bump","description":"When CLI is upgraded (e.g., 0.24.0 → 0.24.1), database version becomes stale. Add auto-migration in PersistentPreRun or daemon startup. Check dbVersion != CLIVersion and run bd migrate automatically. Fixes recurring UX issue where bd doctor shows version mismatch after every CLI upgrade.","status":"tombstone","priority":0,"issue_type":"feature","created_at":"2025-11-21T23:16:09.004619-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","dependencies":[{"issue_id":"bd-jgxi","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:09.005513-08:00","created_by":"daemon"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"}
-{"id":"bd-jjzz","title":"Merge: obsidian-1767106243818","description":"branch: polecat/obsidian-1767106243818\ntarget: main\nsource_issue: obsidian-1767106243818\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T07:00:26.328349-08:00","created_by":"beads/polecats/obsidian","updated_at":"2025-12-30T15:44:43.366109-08:00","closed_at":"2025-12-30T10:27:23.070855-08:00"}
+{"id":"bd-jjzz","title":"Merge: obsidian-1767106243818","description":"branch: polecat/obsidian-1767106243818\ntarget: main\nsource_issue: obsidian-1767106243818\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T07:00:26.328349-08:00","created_by":"beads/polecats/obsidian","updated_at":"2025-12-30T10:27:23.070855-08:00","closed_at":"2025-12-30T10:27:23.070855-08:00","close_reason":"Branch no longer exists on remote - stale MR"}
 {"id":"bd-jke6","title":"Add covering index (label, issue_id) for label queries","description":"GetIssuesByLabel joins labels table but requires table lookup after using idx_labels_label.\n\n**Query (labels.go:165):**\n```sql\nSELECT ... FROM issues i\nJOIN labels l ON i.id = l.issue_id\nWHERE l.label = ?\n```\n\n**Problem:** Current idx_labels_label index doesn't cover issue_id, requiring row lookup.\n\n**Solution:** Add migration:\n```sql\nCREATE INDEX IF NOT EXISTS idx_labels_label_issue ON labels(label, issue_id);\n```\n\nThis is a covering index - query can be satisfied entirely from the index without touching the labels table rows.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-22T22:58:51.485354-08:00","updated_at":"2025-12-22T23:15:13.839904-08:00","closed_at":"2025-12-22T23:15:13.839904-08:00","dependencies":[{"issue_id":"bd-jke6","depends_on_id":"bd-h0we","type":"discovered-from","created_at":"2025-12-22T22:58:51.485984-08:00","created_by":"daemon"}]}
 {"id":"bd-jsk7","title":"Agent beads: structured labels for filtering","description":"## Agent Beads Need Queryable Labels\n\nCurrently agent beads have role_type/rig in description text, not as labels. This breaks @group resolution in gt mail.\n\n## Current State\n```json\n{\n  \"id\": \"gt-gastown-witness\",\n  \"issue_type\": \"agent\",\n  \"description\": \"...\\\\nrole_type: witness\\\\nrig: gastown\\\\n...\"\n}\n```\n\nCannot query: `bd list --type=agent --label=role_type:witness` returns nothing.\n\n## Required\nAgent bead creation should add labels:\n- `role_type:\u003ctype\u003e` (witness, refinery, crew, polecat, dog, mayor, deacon)\n- `rig:\u003crig\u003e` (gastown, beads, or \"town\" for town-level)\n\n## Where to Fix\ngt polecat/crew/agent creation commands should add labels.\n\n## Acceptance\n- New agent beads created with role_type/rig labels\n- @group patterns work in gt mail router","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-29T20:49:13.444793-08:00","created_by":"gastown/crew/joe","updated_at":"2025-12-29T20:58:04.67866-08:00","closed_at":"2025-12-29T20:58:04.67866-08:00","close_reason":"Duplicate of bd-g7eq"}
 {"id":"bd-jv4w","title":"Phase 1.2: Separate bdt executable - Initial structure","description":"Create minimal bdt command structure completely separate from bd. Must not share code, config, or database.\n\n## Subtasks\n1. Create cmd/bdt/ directory with main.go\n2. Implement bdt version, help, and status commands\n3. Configure separate database location: $HOME/.bdt/ (not $HOME/.beads/)\n4. Create separate issues file: issues.toon (not issues.jsonl)\n5. Update build system:\n   - Makefile: Add bdt target\n   - .goreleaser.yml: Add bdt binary config\n\n## Files to Create\n- cmd/bdt/main.go - Entry point\n- cmd/bdt/version.go - Version handling\n- cmd/bdt/help.go - Help text (separate from bd)\n\n## Success Criteria\n- `make build` produces both `bd` and `bdt` executables\n- `bdt version` shows distinct version output from bd\n- `bdt --help` shows distinct help text\n- bdt uses $HOME/.bdt/ directory (verify with `bdt info`)\n- bd and bdt completely isolated (no shared imports beyond stdlib)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T11:48:34.866877282-07:00","updated_at":"2025-12-19T12:59:11.389296015-07:00","closed_at":"2025-12-19T12:59:11.389296015-07:00"}
@@ -488,13 +488,13 @@
 {"id":"bd-likt","title":"Add daemon RPC support for gate commands","description":"Add daemon RPC support for gate commands.\n\n## Current State\nGate commands require --no-daemon flag because they use direct SQLite access:\n- Gate create needs to write await_type, await_id, timeout_ns, waiters fields\n- Gate wait needs to update waiters JSON array\n- Daemon RPC doesnt have methods for these operations\n\n## Implementation\n\n### 1. Add RPC methods to internal/rpc/protocol.go\n\n```go\n// Gate operations\ntype GateCreateArgs struct {\n    Title     string        \\`json:\"title\"\\`\n    AwaitType string        \\`json:\"await_type\"\\`\n    AwaitID   string        \\`json:\"await_id\"\\`\n    Timeout   time.Duration \\`json:\"timeout\"\\`\n    Waiters   []string      \\`json:\"waiters\"\\`\n}\n\ntype GateCreateResult struct {\n    Issue *types.Issue \\`json:\"issue\"\\`\n}\n\ntype GateListArgs struct {\n    All bool \\`json:\"all\"\\` // Include closed gates\n}\n\ntype GateListResult struct {\n    Gates []*types.Issue \\`json:\"gates\"\\`\n}\n\ntype GateWaitArgs struct {\n    GateID  string   \\`json:\"gate_id\"\\`\n    Waiters []string \\`json:\"waiters\"\\` // Additional waiters to add\n}\n\ntype GateWaitResult struct {\n    Gate        *types.Issue \\`json:\"gate\"\\`\n    AddedCount  int          \\`json:\"added_count\"\\`\n}\n```\n\n### 2. Add handler methods to internal/daemon/rpc_handler.go\n\n```go\nfunc (h *RPCHandler) GateCreate(ctx context.Context, args *rpc.GateCreateArgs) (*rpc.GateCreateResult, error) {\n    now := time.Now()\n    gate := \u0026types.Issue{\n        Title:     args.Title,\n        IssueType: types.TypeGate,\n        Status:    types.StatusOpen,\n        Priority:  1,\n        Assignee:  \"deacon/\",\n        Wisp:      true,\n        AwaitType: args.AwaitType,\n        AwaitID:   args.AwaitID,\n        Timeout:   args.Timeout,\n        Waiters:   args.Waiters,\n        CreatedAt: now,\n        UpdatedAt: now,\n    }\n    gate.ContentHash = gate.ComputeContentHash()\n    \n    if err := h.store.CreateIssue(ctx, gate, h.actor); err != nil {\n        return nil, err\n    }\n    \n    return \u0026rpc.GateCreateResult{Issue: gate}, nil\n}\n\nfunc (h *RPCHandler) GateList(ctx context.Context, args *rpc.GateListArgs) (*rpc.GateListResult, error) {\n    gateType := types.TypeGate\n    filter := types.IssueFilter{IssueType: \u0026gateType}\n    if !args.All {\n        openStatus := types.StatusOpen\n        filter.Status = \u0026openStatus\n    }\n    \n    gates, err := h.store.SearchIssues(ctx, \"\", filter)\n    if err != nil {\n        return nil, err\n    }\n    \n    return \u0026rpc.GateListResult{Gates: gates}, nil\n}\n\nfunc (h *RPCHandler) GateWait(ctx context.Context, args *rpc.GateWaitArgs) (*rpc.GateWaitResult, error) {\n    gate, err := h.store.GetIssue(ctx, args.GateID)\n    if err != nil {\n        return nil, err\n    }\n    if gate.IssueType != types.TypeGate {\n        return nil, fmt.Errorf(\"%s is not a gate\", args.GateID)\n    }\n    \n    // Merge waiters (dedupe)\n    waiterSet := make(map[string]bool)\n    for _, w := range gate.Waiters {\n        waiterSet[w] = true\n    }\n    added := 0\n    for _, w := range args.Waiters {\n        if !waiterSet[w] {\n            gate.Waiters = append(gate.Waiters, w)\n            waiterSet[w] = true\n            added++\n        }\n    }\n    \n    if added \u003e 0 {\n        // Update via store\n        updates := map[string]interface{}{\n            \"waiters\": gate.Waiters,\n        }\n        if err := h.store.UpdateIssue(ctx, args.GateID, updates, h.actor); err != nil {\n            return nil, err\n        }\n    }\n    \n    return \u0026rpc.GateWaitResult{Gate: gate, AddedCount: added}, nil\n}\n```\n\n### 3. Register methods in daemon\n\nIn internal/daemon/server.go, register the new methods:\n```go\nrpc.RegisterMethod(\"gate.create\", h.GateCreate)\nrpc.RegisterMethod(\"gate.list\", h.GateList)\nrpc.RegisterMethod(\"gate.wait\", h.GateWait)\n```\n\n### 4. Add client methods to internal/rpc/client.go\n\n```go\nfunc (c *Client) GateCreate(ctx context.Context, args *GateCreateArgs) (*GateCreateResult, error) {\n    var result GateCreateResult\n    err := c.Call(ctx, \"gate.create\", args, \u0026result)\n    return \u0026result, err\n}\n\nfunc (c *Client) GateList(ctx context.Context, args *GateListArgs) (*GateListResult, error) {\n    var result GateListResult\n    err := c.Call(ctx, \"gate.list\", args, \u0026result)\n    return \u0026result, err\n}\n\nfunc (c *Client) GateWait(ctx context.Context, args *GateWaitArgs) (*GateWaitResult, error) {\n    var result GateWaitResult\n    err := c.Call(ctx, \"gate.wait\", args, \u0026result)\n    return \u0026result, err\n}\n```\n\n### 5. Update cmd/bd/gate.go to use daemon\n\n```go\n// In gateCreateCmd Run:\nif daemonClient != nil {\n    result, err := daemonClient.GateCreate(ctx, \u0026rpc.GateCreateArgs{\n        Title:     title,\n        AwaitType: awaitType,\n        AwaitID:   awaitID,\n        Timeout:   timeout,\n        Waiters:   notifyAddrs,\n    })\n    if err != nil {\n        FatalError(\"gate create: %v\", err)\n    }\n    gate = result.Issue\n} else {\n    // Existing direct store code\n}\n```\n\n## Files to Modify\n\n1. **internal/rpc/protocol.go** - Add Gate*Args/Result types\n2. **internal/daemon/rpc_handler.go** - Add handler methods\n3. **internal/daemon/server.go** - Register methods\n4. **internal/rpc/client.go** - Add client methods\n5. **cmd/bd/gate.go** - Use daemon client when available\n\n## Testing\n\n```bash\n# Start daemon\nbd daemon start\n\n# Test via daemon (should work without --no-daemon)\nbd gate create --await timer:5m --notify beads/dave\nbd gate list\nbd gate wait \u003cid\u003e --notify beads/alice\n\n# Verify daemon handled it\nbd daemons logs . | grep gate\n```\n\n## Success Criteria\n- All gate commands work without --no-daemon\n- Same behavior in daemon vs direct mode\n- Waiters array updates correctly via RPC\n- Tests pass for RPC gate operations","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-23T12:13:25.778412-08:00","updated_at":"2025-12-23T13:45:58.398604-08:00","closed_at":"2025-12-23T13:45:58.398604-08:00","dependencies":[{"issue_id":"bd-likt","depends_on_id":"bd-udsi","type":"discovered-from","created_at":"2025-12-23T12:13:36.174822-08:00","created_by":"daemon"},{"issue_id":"bd-likt","depends_on_id":"bd-iz5t","type":"parent-child","created_at":"2025-12-23T12:44:07.891992-08:00","created_by":"daemon"}]}
 {"id":"bd-lk39","title":"Add composite index (issue_id, event_type) on events table","description":"GetCloseReason and GetCloseReasonsForIssues filter by both issue_id and event_type.\n\n**Query (queries.go:355-358):**\n```sql\nSELECT comment FROM events\nWHERE issue_id = ? AND event_type = ?\nORDER BY created_at DESC LIMIT 1\n```\n\n**Problem:** Currently uses idx_events_issue but must filter event_type in memory.\n\n**Solution:** Add migration:\n```sql\nCREATE INDEX IF NOT EXISTS idx_events_issue_type ON events(issue_id, event_type);\n```\n\n**Priority:** Low - events table is typically small relative to issues.","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-22T22:58:54.070587-08:00","updated_at":"2025-12-22T23:15:13.841988-08:00","closed_at":"2025-12-22T23:15:13.841988-08:00","dependencies":[{"issue_id":"bd-lk39","depends_on_id":"bd-h0we","type":"discovered-from","created_at":"2025-12-22T22:58:54.071286-08:00","created_by":"daemon"}]}
 {"id":"bd-ll2n","title":"Move relate/unrelate under dep command","description":"Make relate and unrelate subcommands of dep (dep relate, dep unrelate). They're dependency operations and belong there.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-28T12:59:10.379321-08:00","created_by":"stevey","updated_at":"2025-12-28T13:04:02.520266-08:00","closed_at":"2025-12-28T13:04:02.520266-08:00"}
-{"id":"bd-llfl","title":"Improve test coverage for cmd/bd CLI (26.2% → 50%)","description":"The main CLI package (cmd/bd) has only 26.2% test coverage. CLI commands should have at least 50% coverage to ensure reliability.\n\nKey areas with low/no coverage:\n- daemon_autostart.go (multiple 0% functions)\n- compact.go (several 0% functions)\n- Various command handlers\n\nCurrent coverage: 26.2%\nTarget coverage: 50%","notes":"## Progress Update (2025-12-23)\n\n### Tests Added\nAdded 683 lines of new tests across 3 files:\n- cmd/bd/daemon_config_test.go (144 lines)\n- cmd/bd/utils_test.go (484 lines)  \n- cmd/bd/autostart_test.go (55 additional lines)\n\n### Functions Now Tested\n- daemon_config.go: ensureBeadsDir, getPIDFilePath, getLogFilePath, getSocketPathForPID\n- daemon_autostart.go: determineSocketPath, isDaemonRunningQuiet\n- activity.go: printEvent\n- cleanup.go: showCleanupDeprecationHint\n- upgrade.go: pluralize\n- wisp.go: formatTimeAgo\n- list.go: pinIndicator, sortIssues\n- hooks.go: FormatHookWarnings, isRebaseInProgress, hasBeadsJSONL\n- template.go: extractIDSuffix\n- thanks.go: getContributorsSorted\n\n### Coverage Results\n- Before: 22.5%\n- After: 23.1%\n- Delta: +0.6%\n\n### Remaining Work\nMost remaining untested code (77%) involves:\n1. Daemon/RPC operations (runDaemonLoop, tryAutoStartDaemon, etc.)\n2. Command handlers that require database/daemon setup\n3. Git operations (runPreCommitHook, runPostMergeHook, etc.)\n\nTo reach 50%, would need to:\n- Add integration tests with mocked daemon\n- Add scripttest tests for command handlers\n- Add more database-dependent tests\n\nCommit: 4f949c19","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:03.123341-08:00","updated_at":"2025-12-30T15:05:14.617238-08:00"}
+{"id":"bd-llfl","title":"Improve test coverage for cmd/bd CLI (26.2% → 50%)","description":"The main CLI package (cmd/bd) has only 26.2% test coverage. CLI commands should have at least 50% coverage to ensure reliability.\n\nKey areas with low/no coverage:\n- daemon_autostart.go (multiple 0% functions)\n- compact.go (several 0% functions)\n- Various command handlers\n\nCurrent coverage: 26.2%\nTarget coverage: 50%","notes":"## Progress Update (2025-12-23)\n\n### Tests Added\nAdded 683 lines of new tests across 3 files:\n- cmd/bd/daemon_config_test.go (144 lines)\n- cmd/bd/utils_test.go (484 lines)  \n- cmd/bd/autostart_test.go (55 additional lines)\n\n### Functions Now Tested\n- daemon_config.go: ensureBeadsDir, getPIDFilePath, getLogFilePath, getSocketPathForPID\n- daemon_autostart.go: determineSocketPath, isDaemonRunningQuiet\n- activity.go: printEvent\n- cleanup.go: showCleanupDeprecationHint\n- upgrade.go: pluralize\n- wisp.go: formatTimeAgo\n- list.go: pinIndicator, sortIssues\n- hooks.go: FormatHookWarnings, isRebaseInProgress, hasBeadsJSONL\n- template.go: extractIDSuffix\n- thanks.go: getContributorsSorted\n\n### Coverage Results\n- Before: 22.5%\n- After: 23.1%\n- Delta: +0.6%\n\n### Remaining Work\nMost remaining untested code (77%) involves:\n1. Daemon/RPC operations (runDaemonLoop, tryAutoStartDaemon, etc.)\n2. Command handlers that require database/daemon setup\n3. Git operations (runPreCommitHook, runPostMergeHook, etc.)\n\nTo reach 50%, would need to:\n- Add integration tests with mocked daemon\n- Add scripttest tests for command handlers\n- Add more database-dependent tests\n\nCommit: 4f949c19","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:03.123341-08:00","updated_at":"2025-12-30T15:55:53.191619-08:00"}
 {"id":"bd-lo4","title":"Test pinned issue","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-18T21:44:49.031385-08:00","updated_at":"2025-12-18T21:47:25.055109-08:00","deleted_at":"2025-12-18T21:47:25.055109-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
 {"id":"bd-lrj8","title":"Technical debt: Scattered TODOs should be tracked as issues","description":"Multiple TODO comments exist in the codebase that should be tracked as proper issues:\n\n1. cmd/bd/migrate_hash_ids.go:24 - 'Consider integrating into bd doctor migration detection'\n2. cmd/bd/migrate_tombstones.go:72 - Same\n3. cmd/bd/migrate_sync.go:16 - Same\n4. cmd/bd/migrate_issues.go:15 - Same\n5. cmd/bd/create.go:164 - 'Switch to target repo for multi-repo support'\n6. cmd/bd/create.go:208 - 'Add RPC method to get config in daemon mode'\n7. cmd/bd/daemon_logger.go:131 - 'Remove this once all callers are updated'\n8. cmd/bd/mol_stale.go:67 - 'Add RPC endpoint for stale check'\n9. cmd/bd/sync_test.go:444 - 'Refactor to use direct import logic'\n10. cmd/bd/jira.go:633 - 'In a full implementation, fetch Jira issue and compare timestamps'\n11. internal/formula/types.go:170,174,179,186,210 - Multiple 'Not yet implemented' TODOs\n12. internal/importer/importer_test.go:1010 - 'Test hangs due to database deadlock'\n\nConsider:\n1. Running 'grep -r TODO' periodically to find new ones\n2. Adding a lint rule to discourage inline TODOs\n3. Converting each to a bd issue with proper tracking\n\nLocation: Various files across codebase","status":"closed","priority":4,"issue_type":"chore","created_at":"2025-12-28T15:32:57.125279-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-28T16:34:10.911155-08:00","closed_at":"2025-12-28T16:34:10.911155-08:00","dependencies":[{"issue_id":"bd-lrj8","depends_on_id":"bd-784c","type":"parent-child","created_at":"2025-12-28T15:38:04.33312-08:00","created_by":"daemon"}]}
 {"id":"bd-lsv4","title":"GH#444: Fix inconsistent status naming in_progress vs in-progress","description":"Documentation uses in-progress (hyphen) but code expects in_progress (underscore). Update all docs to use canonical in_progress. See GitHub issue #444.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:14.349425-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"}
-{"id":"bd-luso","title":"Add agent identity to commit metadata for forensics","description":"## Problem\n\nWhen agents (polecats, crew workers) make commits on behalf of a human, the commit only shows:\n- **Author**: Human (e.g., Steve Yegge)\n- **Co-Authored-By**: Claude Opus 4.5 (generic)\n\nMissing from the audit trail:\n- Which agent instance performed the work\n- Whether it was a polecat (transient) or crew (persistent)\n- What rig/workspace it ran in\n\nExample from a recent release commit:\n```\nAuthor: Steve Yegge \u003csteve.yegge@gmail.com\u003e\nCo-Authored-By: Claude Opus 4.5 \u003cnoreply@anthropic.com\u003e\n```\n\nNo way to trace this back to the specific agent session that executed the release molecule.\n\n## Proposal\n\nAdd git trailers to commits made by Gas Town agents:\n\n```\nExecuted-By: beads/polecat/Nux-1766978911613\nRig: beads\nRole: polecat\n```\n\nOr for crew workers:\n```\nExecuted-By: beads/crew/emma\nRig: beads\nRole: crew\n```\n\n## Benefits\n\n1. **Forensics**: If a release goes wrong, trace back to the exact agent session\n2. **Audit**: Query commits by agent type (`git log --grep=\"Role: polecat\"`)\n3. **Debugging**: Correlate commits with handoff mail and session logs\n4. **Accountability**: Distinguish human-direct vs agent-mediated commits\n\n## Implementation\n\nCould be implemented via:\n- Claude Code hooks (UserPromptSubmit or pre-commit)\n- `gt` commit helper that injects trailers\n- CLAUDE.md instructions for agents to include trailers\n\n## Open Questions\n\n- Should molecule ID be included if work was part of a molecule?\n- Should session ID or other correlation data be included?\n- Privacy considerations for commit metadata?","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-29T13:33:53.591916-08:00","created_by":"beads/crew/emma","updated_at":"2025-12-29T21:26:41.103041-08:00","closed_at":"2025-12-29T21:26:41.103041-08:00","close_reason":"Implemented via prepare-commit-msg git hook that auto-injects agent identity trailers"}
+{"id":"bd-luso","title":"Add agent identity to commit metadata for forensics","description":"## Problem\n\nWhen agents (polecats, crew workers) make commits on behalf of a human, the commit only shows:\n- **Author**: Human (e.g., Steve Yegge)\n- **Co-Authored-By**: Claude Opus 4.5 (generic)\n\nMissing from the audit trail:\n- Which agent instance performed the work\n- Whether it was a polecat (transient) or crew (persistent)\n- What rig/workspace it ran in\n\nExample from a recent release commit:\n```\nAuthor: Steve Yegge \u003csteve.yegge@gmail.com\u003e\nCo-Authored-By: Claude Opus 4.5 \u003cnoreply@anthropic.com\u003e\n```\n\nNo way to trace this back to the specific agent session that executed the release molecule.\n\n## Proposal\n\nAdd git trailers to commits made by Gas Town agents:\n\n```\nExecuted-By: beads/polecat/Nux-1766978911613\nRig: beads\nRole: polecat\n```\n\nOr for crew workers:\n```\nExecuted-By: beads/crew/emma\nRig: beads\nRole: crew\n```\n\n## Benefits\n\n1. **Forensics**: If a release goes wrong, trace back to the exact agent session\n2. **Audit**: Query commits by agent type (`git log --grep=\"Role: polecat\"`)\n3. **Debugging**: Correlate commits with handoff mail and session logs\n4. **Accountability**: Distinguish human-direct vs agent-mediated commits\n\n## Implementation\n\nCould be implemented via:\n- Claude Code hooks (UserPromptSubmit or pre-commit)\n- `gt` commit helper that injects trailers\n- CLAUDE.md instructions for agents to include trailers\n\n## Open Questions\n\n- Should molecule ID be included if work was part of a molecule?\n- Should session ID or other correlation data be included?\n- Privacy considerations for commit metadata?","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-29T13:33:53.591916-08:00","created_by":"beads/crew/emma","updated_at":"2025-12-30T10:18:14.323047-08:00","closed_at":"2025-12-29T21:26:41.103041-08:00"}
 {"id":"bd-lw0x","title":"Fix bd sync race condition with daemon causing dirty working directory","description":"After bd sync completes with sync.branch mode, subsequent bd commands or daemon file watcher would see a hash mismatch and trigger auto-import, which then schedules re-export, dirtying the working directory.\n\n**Root cause:**\n1. bd sync exports JSONL with NEW content (hash H1)\n2. bd sync updates jsonl_content_hash = H1 in DB\n3. bd sync restores JSONL from HEAD (OLD content, hash H0)\n4. Now: file hash = H0, DB hash = H1 (MISMATCH)\n5. Daemon or next CLI command sees mismatch, imports from OLD JSONL\n6. Import triggers re-export → file is dirty\n\n**Fix:**\nAfter restoreBeadsDirFromBranch(), update jsonl_content_hash to match the restored file's hash. This ensures daemon and CLI see file hash = DB hash → no spurious import/export cycle.\n\nRelated: bd-c83r (multiple daemon prevention)","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-13T06:42:17.130839-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"}
-{"id":"bd-lxzx","title":"Add close_reason to JSONL export format documentation","description":"PR #551 now persists close_reason to the database, but there's a question about whether this field should be exported to JSONL format.\n\n## Current State\n- close_reason is stored in issues.close_reason column\n- close_reason is also stored in events table (audit trail)\n- The JSONL export format may or may not include close_reason\n\n## Questions\n1. Should close_reason be exported to JSONL format?\n2. If yes, where should it go (root level or nested in events)?\n3. Should there be any special handling to avoid duplication?\n4. How should close_reason be handled during JSONL import?\n\n## Why This Matters\n- JSONL is the git-friendly sync format\n- Other beads instances import from JSONL\n- close_reason is meaningful data that should be preserved across clones\n\n## Suggested Action\n- Check if close_reason is currently exported in JSONL\n- If not, add it to the export schema\n- Document the field in JSONL format spec\n- Add tests for round-trip (export -\u003e import -\u003e verify close_reason)","status":"open","priority":2,"issue_type":"task","assignee":"beads/polecats/onyx","created_at":"2025-12-14T14:25:17.414916-08:00","updated_at":"2025-12-30T15:05:14.596828-08:00","dependencies":[{"issue_id":"bd-lxzx","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:17.416131-08:00","created_by":"stevey"}]}
+{"id":"bd-lxzx","title":"Add close_reason to JSONL export format documentation","description":"PR #551 now persists close_reason to the database, but there's a question about whether this field should be exported to JSONL format.\n\n## Current State\n- close_reason is stored in issues.close_reason column\n- close_reason is also stored in events table (audit trail)\n- The JSONL export format may or may not include close_reason\n\n## Questions\n1. Should close_reason be exported to JSONL format?\n2. If yes, where should it go (root level or nested in events)?\n3. Should there be any special handling to avoid duplication?\n4. How should close_reason be handled during JSONL import?\n\n## Why This Matters\n- JSONL is the git-friendly sync format\n- Other beads instances import from JSONL\n- close_reason is meaningful data that should be preserved across clones\n\n## Suggested Action\n- Check if close_reason is currently exported in JSONL\n- If not, add it to the export schema\n- Document the field in JSONL format spec\n- Add tests for round-trip (export -\u003e import -\u003e verify close_reason)","status":"open","priority":2,"issue_type":"task","assignee":"beads/polecats/onyx","created_at":"2025-12-14T14:25:17.414916-08:00","updated_at":"2025-12-30T15:55:53.192373-08:00","dependencies":[{"issue_id":"bd-lxzx","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:17.416131-08:00","created_by":"stevey"}]}
 {"id":"bd-lz49","title":"Add gate fields: await_type, await_id, timeout, waiters","description":"Add gate-specific fields to the Issue type.\n\n## New Fields\n- await_type: string - Type of condition (gh:run, gh:pr, timer, human, mail)\n- await_id: string - Identifier for the condition\n- timeout: duration - Max time to wait before escalation\n- waiters: []string - Mail addresses to notify when gate clears\n\n## Implementation\n- Add fields to Issue struct in internal/types/types.go\n- Update SQLite schema for new columns\n- Add JSONL serialization/deserialization\n- Update import/export logic","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-23T11:44:32.720196-08:00","updated_at":"2025-12-23T12:00:03.837691-08:00","closed_at":"2025-12-23T12:00:03.837691-08:00","dependencies":[{"issue_id":"bd-lz49","depends_on_id":"bd-udsi","type":"parent-child","created_at":"2025-12-23T11:44:52.738823-08:00","created_by":"daemon"},{"issue_id":"bd-lz49","depends_on_id":"bd-2v0f","type":"blocks","created_at":"2025-12-23T11:44:56.269351-08:00","created_by":"daemon"}]}
 {"id":"bd-m0tl","title":"bd create -f crashes with nil pointer dereference","description":"GitHub issue #674. The markdown import feature crashes at markdown.go:338 because global variables (store, ctx, actor) aren't initialized when createIssuesFromMarkdown is called. The function uses globals set by cobra command framework but is being called before they're ready. Need to either initialize globals at start of function or pass them as parameters.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-21T14:35:14.813012-08:00","updated_at":"2025-12-21T15:41:14.600953-08:00","closed_at":"2025-12-21T15:41:14.600953-08:00"}
 {"id":"bd-m164","title":"Add 0.33.2 to versionChanges in info.go","description":"Add new entry at the TOP of versionChanges array in cmd/bd/info.go:\n\n```go\n{\n    Version: \"0.33.2\",\n    Date:    \"2025-12-21\",\n    Changes: []string{\n        // Add notable changes here\n    },\n},\n```\n\nCopy changes from CHANGELOG.md [Unreleased] section.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-21T16:10:13.761218-08:00","updated_at":"2025-12-21T17:29:31.791368-08:00","deleted_at":"2025-12-21T17:29:31.791368-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
@@ -506,57 +506,44 @@
 {"id":"bd-mol-0qm","title":"mol-beads-release","description":"attached_args: Release v0.38.0 - execute each step in order, verify before proceeding to next\n\nRelease checklist for beads version 0.38.0.\n\nThis molecule ensures all release steps are completed properly.\nVariable: 0.38.0 - target version (e.g., 0.35.0)\n\n## Step: update-release-notes\nUpdate cmd/bd/info.go with release notes for 0.38.0.\n\nAdd a new VersionChange entry at the top of versionChanges slice:\n```go\n{\n    Version: \"0.38.0\",\n    Date:    \"YYYY-MM-DD\",\n    Changes: []string{\n        \"NEW: Feature description\",\n        \"FIX: Bug fix description\",\n        \"IMPROVED: Enhancement description\",\n    },\n},\n```\n\nRun `git log --oneline v\u003cprevious\u003e..HEAD` to see what changed.\n\n## Step: update-changelog\nUpdate CHANGELOG.md with detailed release notes.\n\nAdd a new section after [Unreleased]:\n```markdown\n## [0.38.0] - YYYY-MM-DD\n\n### Added\n- **Feature name** (issue-id) - Description\n\n### Changed\n- **Change description** (issue-id)\n\n### Fixed\n- **Bug fix** (issue-id) - Description\n```\n\nSort by importance, not chronologically.\nNeeds: update-release-notes\n\n## Step: bump-version\nRun the version bump script.\n\n```bash\n./scripts/bump-version.sh 0.38.0\n```\n\nThis updates version in all files:\n- cmd/bd/version.go\n- .claude-plugin/*.json\n- integrations/beads-mcp/pyproject.toml\n- npm-package/package.json\n- Hook templates\n\nNeeds: update-changelog\n\n## Step: run-tests\nRun tests and verify lint passes.\n\n```bash\ngo test -short ./...\n```\n\nCI will run full lint, but fix any obvious issues first.\nNeeds: bump-version\n\n## Step: commit-release\nCommit the release changes.\n\n```bash\ngit add -A\ngit commit -m \"chore: bump version to v0.38.0\"\n```\n\nNeeds: run-tests\n\n## Step: push-and-tag\nPush commit and create release tag.\n\n```bash\ngit push origin main\ngit tag v0.38.0\ngit push origin v0.38.0\n```\n\nThis triggers GitHub Actions release workflow.\nNeeds: commit-release\n\n## Step: wait-for-ci\nWait for GitHub Actions to complete.\n\nMonitor: https://github.com/steveyegge/beads/actions\n\nCI will:\n- Build binaries via GoReleaser\n- Create GitHub Release with assets\n- Publish to npm (@beads/bd)\n- Publish to PyPI (beads-mcp)\n- Update Homebrew tap\n\nWait until all jobs succeed (~5-10 min).\nNeeds: push-and-tag\n\n## Step: verify-release\nVerify the release is complete.\n\n```bash\n# Check GitHub release\ngh release view v0.38.0\n\n# Check Homebrew\nbrew update \u0026\u0026 brew info steveyegge/beads/bd\n\n# Check npm\nnpm view @beads/bd version\n\n# Check PyPI\npip index versions beads-mcp\n```\n\nNeeds: wait-for-ci\n\n## Step: update-local\nUpdate local installations.\n\n```bash\n# Upgrade Homebrew\nbrew upgrade steveyegge/beads/bd\n\n# Or install from source\n./scripts/bump-version.sh 0.38.0 --install\n\n# Install MCP locally\npip install -e integrations/beads-mcp\n\n# Restart daemons\npkill -f \"bd daemon\" || true\n```\n\nVerify: `bd --version` shows 0.38.0\nNeeds: verify-release\n\n## Step: manual-publish\n(Optional) Manual publish if CI failed.\n\n```bash\n# npm (requires npm login)\n./scripts/bump-version.sh 0.38.0 --publish-npm\n\n# PyPI (requires TWINE credentials)\n./scripts/bump-version.sh 0.38.0 --publish-pypi\n\n# Or both\n./scripts/bump-version.sh 0.38.0 --publish-all\n```\n\nOnly needed if CI publishing failed.\nNeeds: wait-for-ci","status":"tombstone","priority":2,"issue_type":"molecule","created_at":"2025-12-27T00:29:46.694495-08:00","updated_at":"2025-12-28T01:24:39.173644-08:00","deleted_at":"2025-12-28T01:24:39.173644-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"molecule"}
 {"id":"bd-mol-0rq","title":"Verify npm package","description":"Confirm npm package published.\n\n```bash\nnpm show @beads/bd version\n```\n\nShould show 0.99.0-test.\n\nAlso check: https://www.npmjs.com/package/@beads/bd","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T17:09:12.467054-08:00","updated_at":"2025-12-29T17:09:32.480437-08:00","deleted_at":"2025-12-29T17:09:32.480437-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-mol-0x4","title":"Preflight: Pull latest","description":"Ensure we're up to date with origin.\n\n```bash\ngit pull --rebase\n```\n\nResolve any conflicts before proceeding.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T16:29:32.299205-08:00","updated_at":"2025-12-29T17:02:15.202404-08:00","close_reason":"Already up to date","deleted_at":"2025-12-29T17:02:15.202404-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
-{"id":"bd-mol-117","title":"Restart daemons","description":"Restart bd daemons to pick up new version.\n\n```bash\nbd daemons killall\n```\n\nDaemons will auto-restart with new version on next bd command.\n\nVerify:\n```bash\nbd daemons list\n```","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T19:31:50.999837-08:00","updated_at":"2025-12-28T01:24:39.175701-08:00","dependencies":[{"issue_id":"bd-mol-117","depends_on_id":"bd-mol-9ea","type":"parent-child","created_at":"2025-12-27T19:31:51.011531-08:00","created_by":"beads/crew/dave"}],"deleted_at":"2025-12-28T01:24:39.175701-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
-{"id":"bd-mol-172","title":"Review changes since last release","description":"Understand what's being released.\n\n```bash\ngit log $(git describe --tags --abbrev=0)..HEAD --oneline\n```\n\nCategorize changes:\n- Features (feat:)\n- Fixes (fix:)\n- Breaking changes\n- Documentation","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T19:31:50.996753-08:00","updated_at":"2025-12-28T01:24:39.177206-08:00","dependencies":[{"issue_id":"bd-mol-172","depends_on_id":"bd-mol-9ea","type":"parent-child","created_at":"2025-12-27T19:31:51.0023-08:00","created_by":"beads/crew/dave"},{"issue_id":"bd-mol-172","depends_on_id":"bd-mol-408","type":"blocks","created_at":"2025-12-27T19:31:51.013483-08:00","created_by":"beads/crew/dave"}],"deleted_at":"2025-12-28T01:24:39.177206-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
+{"id":"bd-mol-117","title":"Restart daemons","description":"Restart bd daemons to pick up new version.\n\n```bash\nbd daemons killall\n```\n\nDaemons will auto-restart with new version on next bd command.\n\nVerify:\n```bash\nbd daemons list\n```","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T19:31:50.999837-08:00","updated_at":"2025-12-28T01:24:39.175701-08:00","deleted_at":"2025-12-28T01:24:39.175701-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
+{"id":"bd-mol-172","title":"Review changes since last release","description":"Understand what's being released.\n\n```bash\ngit log $(git describe --tags --abbrev=0)..HEAD --oneline\n```\n\nCategorize changes:\n- Features (feat:)\n- Fixes (fix:)\n- Breaking changes\n- Documentation","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T19:31:50.996753-08:00","updated_at":"2025-12-28T01:24:39.177206-08:00","deleted_at":"2025-12-28T01:24:39.177206-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
 {"id":"bd-mol-1hi","title":"Wait for CI","description":"Monitor GitHub Actions for release completion.\n\nhttps://github.com/steveyegge/beads/actions\n\nExpected time: 5-10 minutes\n\nWatch for:\n- Build artifacts (all platforms)\n- Test suite pass\n- npm publish\n- PyPI publish","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T16:29:32.301021-08:00","updated_at":"2025-12-29T17:02:15.202404-08:00","close_reason":"CI and Release workflows passed","deleted_at":"2025-12-29T17:02:15.202404-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-mol-1s6","title":"Release complete","description":"Release v0.99.0-test is complete!\n\nSummary:\n- All version files updated\n- Git tag pushed\n- CI artifacts built\n- npm and PyPI packages published\n- Local installation updated\n- Daemons restarted\n\nOptional next steps:\n- Announce on social media\n- Update documentation site\n- Close related milestone","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T17:09:12.46773-08:00","updated_at":"2025-12-29T17:09:32.480437-08:00","deleted_at":"2025-12-29T17:09:32.480437-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-mol-29b","title":"Update local installation","description":"Update local bd to the new version.\n\nOption 1 - Homebrew:\n```bash\nbrew upgrade bd\n```\n\nOption 2 - Install script:\n```bash\ncurl -fsSL https://raw.githubusercontent.com/steveyegge/beads/main/scripts/install.sh | bash\n```\n\nVerify:\n```bash\nbd --version\n```\n\nShould show 0.99.0-test.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T17:09:12.467393-08:00","updated_at":"2025-12-29T17:09:32.480437-08:00","deleted_at":"2025-12-29T17:09:32.480437-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-mol-392","title":"Update info.go versionChanges","description":"Add entry to versionChanges in cmd/bd/info.go.\n\nThis powers `bd info --whats-new` for agents.\n\n```go\n\"0.99.0-test\": {\n    \"summary\": \"Brief description\",\n    \"changes\": []string{\n        \"Key change 1\",\n        \"Key change 2\",\n    },\n},\n```\n\nFocus on workflow-impacting changes agents need to know.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T17:09:12.465438-08:00","updated_at":"2025-12-29T17:09:32.480437-08:00","deleted_at":"2025-12-29T17:09:32.480437-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-mol-3u1","title":"Verify GitHub release","description":"Check the GitHub releases page.\n\nhttps://github.com/steveyegge/beads/releases/tag/v0.99.0-test\n\nVerify:\n- Release created\n- Binaries attached (linux, darwin, windows)\n- Checksums present","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T17:09:12.466851-08:00","updated_at":"2025-12-29T17:09:32.480437-08:00","deleted_at":"2025-12-29T17:09:32.480437-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
-{"id":"bd-mol-408","title":"Preflight: Pull latest","description":"Ensure we're up to date with origin.\n\n```bash\ngit pull --rebase\n```\n\nResolve any conflicts before proceeding.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T19:31:50.996456-08:00","updated_at":"2025-12-29T12:39:45.160561-08:00","dependencies":[{"issue_id":"bd-mol-408","depends_on_id":"bd-mol-9ea","type":"parent-child","created_at":"2025-12-27T19:31:51.001603-08:00","created_by":"beads/crew/dave"}],"deleted_at":"2025-12-29T12:39:45.160561-08:00","deleted_by":"daemon","delete_reason":"stale release mol steps","original_type":"task"}
-{"id":"bd-mol-43m","title":"Review changes since last release","description":"Understand what's being released.\n\n```bash\ngit log $(git describe --tags --abbrev=0)..HEAD --oneline\n```\n\nCategorize changes:\n- Features (feat:)\n- Fixes (fix:)\n- Breaking changes\n- Documentation","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T17:09:12.465061-08:00","updated_at":"2025-12-29T17:09:32.480437-08:00","deleted_at":"2025-12-29T17:09:32.480437-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-mol-4bi","title":"Update local installation","description":"Update local bd to the new version.\n\nOption 1 - Homebrew:\n```bash\nbrew upgrade bd\n```\n\nOption 2 - Install script:\n```bash\ncurl -fsSL https://raw.githubusercontent.com/steveyegge/beads/main/scripts/install.sh | bash\n```\n\nVerify:\n```bash\nbd --version\n```\n\nShould show 0.39.0.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T19:34:09.560034-08:00","updated_at":"2025-12-28T01:24:39.180156-08:00","dependencies":[{"issue_id":"bd-mol-4bi","depends_on_id":"bd-mol-5h4","type":"blocks","created_at":"2025-12-27T19:34:09.61331-08:00","created_by":"beads/crew/dave"},{"issue_id":"bd-mol-4bi","depends_on_id":"bd-mol-v3g","type":"blocks","created_at":"2025-12-27T19:34:09.615361-08:00","created_by":"beads/crew/dave"}],"deleted_at":"2025-12-28T01:24:39.180156-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
 {"id":"bd-mol-4xo","title":"beads-release","description":"Beads release workflow - from version bump to verified release.\n\nThis formula orchestrates a complete release cycle:\n1. Preflight checks (clean git, up to date)\n2. Documentation updates (CHANGELOG, info.go)\n3. Version bump (all components)\n4. Git operations (commit, tag, push)\n5. CI verification (GitHub Actions)\n6. Artifact verification (GitHub, npm, PyPI)\n7. Local installation update\n8. Daemon restart\n\n## Usage\n\n```bash\nbd wisp create beads-release --var version=0.37.0\n```\n\nOr assign to a polecat:\n```bash\ngt sling beads/polecats/p1 --formula beads-release --var version=0.37.0\n```","status":"tombstone","priority":2,"issue_type":"epic","created_at":"2025-12-29T17:09:12.46423-08:00","updated_at":"2025-12-29T17:09:32.480437-08:00","deleted_at":"2025-12-29T17:09:32.480437-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"epic"}
-{"id":"bd-mol-4zt","title":"Wait for CI","description":"Monitor GitHub Actions for release completion.\n\nhttps://github.com/steveyegge/beads/actions\n\nExpected time: 5-10 minutes\n\nWatch for:\n- Build artifacts (all platforms)\n- Test suite pass\n- npm publish\n- PyPI publish","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T19:34:09.559177-08:00","updated_at":"2025-12-28T01:24:39.181582-08:00","dependencies":[{"issue_id":"bd-mol-4zt","depends_on_id":"bd-mol-9ry","type":"blocks","created_at":"2025-12-27T19:34:09.605511-08:00","created_by":"beads/crew/dave"}],"deleted_at":"2025-12-28T01:24:39.181582-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
 {"id":"bd-mol-54r","title":"Run bump-version.sh","description":"Update all component versions atomically.\n\n```bash\n./scripts/bump-version.sh 0.99.0-test\n```\n\nThis updates:\n- cmd/bd/version.go\n- .claude-plugin/*.json\n- integrations/beads-mcp/pyproject.toml\n- integrations/beads-mcp/src/beads_mcp/__init__.py\n- npm-package/package.json\n- Hook templates\n- README.md\n- CHANGELOG.md (adds date)","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T17:09:12.465615-08:00","updated_at":"2025-12-29T17:09:32.480437-08:00","deleted_at":"2025-12-29T17:09:32.480437-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-mol-5h4","title":"Verify npm package","description":"Confirm npm package published.\n\n```bash\nnpm show @beads/bd version\n```\n\nShould show 0.39.0.\n\nAlso check: https://www.npmjs.com/package/@beads/bd","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T19:34:09.55961-08:00","updated_at":"2025-12-28T01:24:39.182917-08:00","dependencies":[{"issue_id":"bd-mol-5h4","depends_on_id":"bd-mol-68e","type":"blocks","created_at":"2025-12-27T19:34:09.609272-08:00","created_by":"beads/crew/dave"}],"deleted_at":"2025-12-28T01:24:39.182917-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
-{"id":"bd-mol-678","title":"Create release tag","description":"Create annotated git tag.\n\n```bash\ngit tag -a v0.39.0 -m \"Release v0.39.0\"\n```\n\nVerify: `git tag -l | tail -5`","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T19:31:50.998148-08:00","updated_at":"2025-12-29T12:39:45.162388-08:00","dependencies":[{"issue_id":"bd-mol-678","depends_on_id":"bd-mol-9ea","type":"parent-child","created_at":"2025-12-27T19:31:51.006262-08:00","created_by":"beads/crew/dave"},{"issue_id":"bd-mol-678","depends_on_id":"bd-mol-8ep","type":"blocks","created_at":"2025-12-27T19:31:51.018908-08:00","created_by":"beads/crew/dave"}],"deleted_at":"2025-12-29T12:39:45.162388-08:00","deleted_by":"daemon","delete_reason":"stale release mol steps","original_type":"task"}
-{"id":"bd-mol-68e","title":"Verify GitHub release","description":"Check the GitHub releases page.\n\nhttps://github.com/steveyegge/beads/releases/tag/v0.39.0\n\nVerify:\n- Release created\n- Binaries attached (linux, darwin, windows)\n- Checksums present","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T19:34:09.559402-08:00","updated_at":"2025-12-28T01:24:39.184285-08:00","dependencies":[{"issue_id":"bd-mol-68e","depends_on_id":"bd-mol-4zt","type":"blocks","created_at":"2025-12-27T19:34:09.607353-08:00","created_by":"beads/crew/dave"}],"deleted_at":"2025-12-28T01:24:39.184285-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
+{"id":"bd-mol-678","title":"Create release tag","description":"Create annotated git tag.\n\n```bash\ngit tag -a v0.39.0 -m \"Release v0.39.0\"\n```\n\nVerify: `git tag -l | tail -5`","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T19:31:50.998148-08:00","updated_at":"2025-12-29T12:39:45.162388-08:00","dependencies":[{"issue_id":"bd-mol-678","depends_on_id":"bd-mol-8ep","type":"blocks","created_at":"2025-12-27T19:31:51.018908-08:00","created_by":"beads/crew/dave"}],"deleted_at":"2025-12-29T12:39:45.162388-08:00","deleted_by":"daemon","delete_reason":"stale release mol steps","original_type":"task"}
+{"id":"bd-mol-68e","title":"Verify GitHub release","description":"Check the GitHub releases page.\n\nhttps://github.com/steveyegge/beads/releases/tag/v0.39.0\n\nVerify:\n- Release created\n- Binaries attached (linux, darwin, windows)\n- Checksums present","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T19:34:09.559402-08:00","updated_at":"2025-12-28T01:24:39.184285-08:00","deleted_at":"2025-12-28T01:24:39.184285-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
 {"id":"bd-mol-7ix","title":"Preflight: Check git status","description":"Ensure working tree is clean before starting release.\n\n```bash\ngit status\n```\n\nIf there are uncommitted changes, either:\n- Commit them first\n- Stash them: `git stash`\n- Abort and resolve","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T19:34:09.556672-08:00","updated_at":"2025-12-28T01:24:39.185583-08:00","deleted_at":"2025-12-28T01:24:39.185583-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
 {"id":"bd-mol-7tp","title":"Push to main","description":"Push the release commit to origin.\n\n```bash\ngit push origin main\n```\n\nIf rejected, someone else pushed. Pull, rebase, try again.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T19:34:09.558743-08:00","updated_at":"2025-12-28T01:24:39.186846-08:00","deleted_at":"2025-12-28T01:24:39.186846-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
 {"id":"bd-mol-7yd","title":"Update CHANGELOG.md","description":"Write the [Unreleased] section with all changes for 0.99.0-test.\n\nFormat: Keep a Changelog (https://keepachangelog.com)\n\nSections:\n- ### Added\n- ### Changed\n- ### Fixed\n- ### Documentation\n\nThe bump script will stamp the date automatically.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T17:09:12.465251-08:00","updated_at":"2025-12-29T17:09:32.480437-08:00","deleted_at":"2025-12-29T17:09:32.480437-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-mol-83s","title":"Commit release","description":"Stage and commit all version changes.\n\n```bash\ngit add -A\ngit commit -m \"chore: Bump version to 0.41.0\"\n```\n\nReview the commit to ensure all expected files are included.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T16:29:32.300302-08:00","updated_at":"2025-12-29T17:02:15.202404-08:00","close_reason":"Release committed","deleted_at":"2025-12-29T17:02:15.202404-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
-{"id":"bd-mol-8ep","title":"Commit release","description":"Stage and commit all version changes.\n\n```bash\ngit add -A\ngit commit -m \"chore: Bump version to 0.39.0\"\n```\n\nReview the commit to ensure all expected files are included.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T19:31:50.99794-08:00","updated_at":"2025-12-28T01:24:39.188062-08:00","dependencies":[{"issue_id":"bd-mol-8ep","depends_on_id":"bd-mol-9ea","type":"parent-child","created_at":"2025-12-27T19:31:51.005611-08:00","created_by":"beads/crew/dave"},{"issue_id":"bd-mol-8ep","depends_on_id":"bd-mol-mht","type":"blocks","created_at":"2025-12-27T19:31:51.017961-08:00","created_by":"beads/crew/dave"}],"deleted_at":"2025-12-28T01:24:39.188062-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
+{"id":"bd-mol-8ep","title":"Commit release","description":"Stage and commit all version changes.\n\n```bash\ngit add -A\ngit commit -m \"chore: Bump version to 0.39.0\"\n```\n\nReview the commit to ensure all expected files are included.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T19:31:50.99794-08:00","updated_at":"2025-12-28T01:24:39.188062-08:00","dependencies":[{"issue_id":"bd-mol-8ep","depends_on_id":"bd-mol-mht","type":"blocks","created_at":"2025-12-27T19:31:51.017961-08:00","created_by":"beads/crew/dave"}],"deleted_at":"2025-12-28T01:24:39.188062-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
 {"id":"bd-mol-8sw","title":"Verify PyPI package","description":"Confirm PyPI package published.\n\n```bash\npip index versions beads-mcp 2\u003e/dev/null | head -3\n```\n\nOr check: https://pypi.org/project/beads-mcp/\n\nShould show 0.41.0.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T16:29:32.301544-08:00","updated_at":"2025-12-29T17:02:15.202404-08:00","close_reason":"PyPI: beads-mcp 0.41.0 published","deleted_at":"2025-12-29T17:02:15.202404-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
-{"id":"bd-mol-8zw","title":"Release complete","description":"Release v0.39.0 is complete!\n\nSummary:\n- All version files updated\n- Git tag pushed\n- CI artifacts built\n- npm and PyPI packages published\n- Local installation updated\n- Daemons restarted\n\nOptional next steps:\n- Announce on social media\n- Update documentation site\n- Close related milestone","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T19:31:51.000045-08:00","updated_at":"2025-12-28T01:24:39.18926-08:00","dependencies":[{"issue_id":"bd-mol-8zw","depends_on_id":"bd-mol-9ea","type":"parent-child","created_at":"2025-12-27T19:31:51.012163-08:00","created_by":"beads/crew/dave"},{"issue_id":"bd-mol-8zw","depends_on_id":"bd-mol-117","type":"blocks","created_at":"2025-12-27T19:31:51.030757-08:00","created_by":"beads/crew/dave"}],"deleted_at":"2025-12-28T01:24:39.18926-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
+{"id":"bd-mol-8zw","title":"Release complete","description":"Release v0.39.0 is complete!\n\nSummary:\n- All version files updated\n- Git tag pushed\n- CI artifacts built\n- npm and PyPI packages published\n- Local installation updated\n- Daemons restarted\n\nOptional next steps:\n- Announce on social media\n- Update documentation site\n- Close related milestone","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T19:31:51.000045-08:00","updated_at":"2025-12-28T01:24:39.18926-08:00","dependencies":[{"issue_id":"bd-mol-8zw","depends_on_id":"bd-mol-117","type":"blocks","created_at":"2025-12-27T19:31:51.030757-08:00","created_by":"beads/crew/dave"}],"deleted_at":"2025-12-28T01:24:39.18926-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
 {"id":"bd-mol-937","title":"Update CHANGELOG.md","description":"Write the [Unreleased] section with all changes for 0.39.0.\n\nFormat: Keep a Changelog (https://keepachangelog.com)\n\nSections:\n- ### Added\n- ### Changed\n- ### Fixed\n- ### Documentation\n\nThe bump script will stamp the date automatically.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T19:34:09.557415-08:00","updated_at":"2025-12-28T01:24:39.19064-08:00","deleted_at":"2025-12-28T01:24:39.19064-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
-{"id":"bd-mol-9ea","title":"beads-release","description":"Beads release workflow - from version bump to verified release.\n\nThis formula orchestrates a complete release cycle:\n1. Preflight checks (clean git, up to date)\n2. Documentation updates (CHANGELOG, info.go)\n3. Version bump (all components)\n4. Git operations (commit, tag, push)\n5. CI verification (GitHub Actions)\n6. Artifact verification (GitHub, npm, PyPI)\n7. Local installation update\n8. Daemon restart\n\n## Usage\n\n```bash\nbd wisp create beads-release --var version=0.37.0\n```\n\nOr assign to a polecat:\n```bash\ngt sling beads/polecats/p1 --formula beads-release --var version=0.37.0\n```","status":"tombstone","priority":2,"issue_type":"epic","created_at":"2025-12-27T19:31:50.995481-08:00","updated_at":"2025-12-28T02:21:04.82393-08:00","deleted_at":"2025-12-28T02:21:04.82393-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"epic"}
 {"id":"bd-mol-9ry","title":"Push release tag","description":"Push the version tag to trigger CI release.\n\n```bash\ngit push origin v0.39.0\n```\n\nThis triggers GitHub Actions to build artifacts and publish.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T19:34:09.55896-08:00","updated_at":"2025-12-28T01:24:39.191874-08:00","dependencies":[{"issue_id":"bd-mol-9ry","depends_on_id":"bd-mol-7tp","type":"blocks","created_at":"2025-12-27T19:34:09.603722-08:00","created_by":"beads/crew/dave"}],"deleted_at":"2025-12-28T01:24:39.191874-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
 {"id":"bd-mol-9v7","title":"Update local installation","description":"Update local bd to the new version.\n\nOption 1 - Homebrew:\n```bash\nbrew upgrade bd\n```\n\nOption 2 - Install script:\n```bash\ncurl -fsSL https://raw.githubusercontent.com/steveyegge/beads/main/scripts/install.sh | bash\n```\n\nVerify:\n```bash\nbd --version\n```\n\nShould show 0.41.0.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T16:29:32.301716-08:00","updated_at":"2025-12-29T17:02:15.202404-08:00","close_reason":"bd 0.41.0 installed to go/bin and .local/bin","deleted_at":"2025-12-29T17:02:15.202404-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
-{"id":"bd-mol-a78","title":"Restart daemons","description":"Restart bd daemons to pick up new version.\n\n```bash\nbd daemons killall\n```\n\nDaemons will auto-restart with new version on next bd command.\n\nVerify:\n```bash\nbd daemons list\n```","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T16:29:32.301896-08:00","updated_at":"2025-12-29T17:02:15.202404-08:00","close_reason":"5 daemons stopped (will auto-restart)","deleted_at":"2025-12-29T17:02:15.202404-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
-{"id":"bd-mol-aj8","title":"Preflight: Check git status","description":"Ensure working tree is clean before starting release.\n\n```bash\ngit status\n```\n\nIf there are uncommitted changes, either:\n- Commit them first\n- Stash them: `git stash`\n- Abort and resolve","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T17:09:12.464663-08:00","updated_at":"2025-12-29T17:09:32.480437-08:00","deleted_at":"2025-12-29T17:09:32.480437-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
-{"id":"bd-mol-bag","title":"Preflight: Check git status","description":"Ensure working tree is clean before starting release.\n\n```bash\ngit status\n```\n\nIf there are uncommitted changes, either:\n- Commit them first\n- Stash them: `git stash`\n- Abort and resolve","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T16:29:32.298999-08:00","updated_at":"2025-12-29T17:02:15.202404-08:00","close_reason":"Git status clean","deleted_at":"2025-12-29T17:02:15.202404-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-mol-bfs","title":"Run bump-version.sh","description":"Update all component versions atomically.\n\n```bash\n./scripts/bump-version.sh 0.39.0\n```\n\nThis updates:\n- cmd/bd/version.go\n- .claude-plugin/*.json\n- integrations/beads-mcp/pyproject.toml\n- integrations/beads-mcp/src/beads_mcp/__init__.py\n- npm-package/package.json\n- Hook templates\n- README.md\n- CHANGELOG.md (adds date)","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T19:34:09.557864-08:00","updated_at":"2025-12-28T01:24:39.192947-08:00","deleted_at":"2025-12-28T01:24:39.192947-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
-{"id":"bd-mol-bv6","title":"Push to main","description":"Push the release commit to origin.\n\n```bash\ngit push origin main\n```\n\nIf rejected, someone else pushed. Pull, rebase, try again.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T17:09:12.466318-08:00","updated_at":"2025-12-29T17:09:32.480437-08:00","deleted_at":"2025-12-29T17:09:32.480437-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-mol-c4h","title":"Verify version consistency","description":"Confirm all versions match 0.41.0.\n\n```bash\ngrep 'Version = ' cmd/bd/version.go\njq -r '.version' .claude-plugin/plugin.json\njq -r '.version' npm-package/package.json\ngrep 'version = ' integrations/beads-mcp/pyproject.toml\n```\n\nAll should show 0.41.0.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T16:29:32.300123-08:00","updated_at":"2025-12-29T17:02:15.202404-08:00","close_reason":"All versions match 0.41.0","deleted_at":"2025-12-29T17:02:15.202404-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
-{"id":"bd-mol-d3i","title":"Preflight: Pull latest","description":"Ensure we're up to date with origin.\n\n```bash\ngit pull --rebase\n```\n\nResolve any conflicts before proceeding.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T17:09:12.464865-08:00","updated_at":"2025-12-29T17:09:32.480437-08:00","deleted_at":"2025-12-29T17:09:32.480437-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-mol-fuz","title":"Push release tag","description":"Push the version tag to trigger CI release.\n\n```bash\ngit push origin v0.99.0-test\n```\n\nThis triggers GitHub Actions to build artifacts and publish.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T17:09:12.466489-08:00","updated_at":"2025-12-29T17:09:32.480437-08:00","deleted_at":"2025-12-29T17:09:32.480437-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-mol-hkf","title":"Release complete","description":"Release v0.41.0 is complete!\n\nSummary:\n- All version files updated\n- Git tag pushed\n- CI artifacts built\n- npm and PyPI packages published\n- Local installation updated\n- Daemons restarted\n\nOptional next steps:\n- Announce on social media\n- Update documentation site\n- Close related milestone","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T16:29:32.302071-08:00","updated_at":"2025-12-29T17:02:15.202404-08:00","close_reason":"bd v0.41.0 release complete","deleted_at":"2025-12-29T17:02:15.202404-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-mol-hvu","title":"Create release tag","description":"Create annotated git tag.\n\n```bash\ngit tag -a v0.99.0-test -m \"Release v0.99.0-test\"\n```\n\nVerify: `git tag -l | tail -5`","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T17:09:12.466141-08:00","updated_at":"2025-12-29T17:09:32.480437-08:00","deleted_at":"2025-12-29T17:09:32.480437-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
-{"id":"bd-mol-j67","title":"Push to main","description":"Push the release commit to origin.\n\n```bash\ngit push origin main\n```\n\nIf rejected, someone else pushed. Pull, rebase, try again.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T16:29:32.300677-08:00","updated_at":"2025-12-29T17:02:15.202404-08:00","close_reason":"Pushed to main","deleted_at":"2025-12-29T17:02:15.202404-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-mol-jiq","title":"Verify npm package","description":"Confirm npm package published.\n\n```bash\nnpm show @beads/bd version\n```\n\nShould show 0.41.0.\n\nAlso check: https://www.npmjs.com/package/@beads/bd","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T16:29:32.30137-08:00","updated_at":"2025-12-29T17:02:15.202404-08:00","close_reason":"npm: @beads/bd 0.41.0 published","deleted_at":"2025-12-29T17:02:15.202404-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
-{"id":"bd-mol-jzn","title":"Wait for CI","description":"Monitor GitHub Actions for release completion.\n\nhttps://github.com/steveyegge/beads/actions\n\nExpected time: 5-10 minutes\n\nWatch for:\n- Build artifacts (all platforms)\n- Test suite pass\n- npm publish\n- PyPI publish","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T17:09:12.466679-08:00","updated_at":"2025-12-29T17:09:32.480437-08:00","deleted_at":"2025-12-29T17:09:32.480437-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-mol-k9f","title":"Verify GitHub release","description":"Check the GitHub releases page.\n\nhttps://github.com/steveyegge/beads/releases/tag/v0.41.0\n\nVerify:\n- Release created\n- Binaries attached (linux, darwin, windows)\n- Checksums present","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T16:29:32.3012-08:00","updated_at":"2025-12-29T17:02:15.202404-08:00","close_reason":"Release published with all platform binaries","deleted_at":"2025-12-29T17:02:15.202404-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-mol-lks","title":"Verify PyPI package","description":"Confirm PyPI package published.\n\n```bash\npip index versions beads-mcp 2\u003e/dev/null | head -3\n```\n\nOr check: https://pypi.org/project/beads-mcp/\n\nShould show 0.99.0-test.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T17:09:12.467224-08:00","updated_at":"2025-12-29T17:09:32.480437-08:00","deleted_at":"2025-12-29T17:09:32.480437-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
-{"id":"bd-mol-mht","title":"Verify version consistency","description":"Confirm all versions match 0.39.0.\n\n```bash\ngrep 'Version = ' cmd/bd/version.go\njq -r '.version' .claude-plugin/plugin.json\njq -r '.version' npm-package/package.json\ngrep 'version = ' integrations/beads-mcp/pyproject.toml\n```\n\nAll should show 0.39.0.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T19:31:50.997714-08:00","updated_at":"2025-12-28T01:24:39.198003-08:00","dependencies":[{"issue_id":"bd-mol-mht","depends_on_id":"bd-mol-9ea","type":"parent-child","created_at":"2025-12-27T19:31:51.00493-08:00","created_by":"beads/crew/dave"}],"deleted_at":"2025-12-28T01:24:39.198003-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
+{"id":"bd-mol-mht","title":"Verify version consistency","description":"Confirm all versions match 0.39.0.\n\n```bash\ngrep 'Version = ' cmd/bd/version.go\njq -r '.version' .claude-plugin/plugin.json\njq -r '.version' npm-package/package.json\ngrep 'version = ' integrations/beads-mcp/pyproject.toml\n```\n\nAll should show 0.39.0.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T19:31:50.997714-08:00","updated_at":"2025-12-28T01:24:39.198003-08:00","deleted_at":"2025-12-28T01:24:39.198003-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
 {"id":"bd-mol-mwh","title":"Run bump-version.sh","description":"Update all component versions atomically.\n\n```bash\n./scripts/bump-version.sh 0.41.0\n```\n\nThis updates:\n- cmd/bd/version.go\n- .claude-plugin/*.json\n- integrations/beads-mcp/pyproject.toml\n- integrations/beads-mcp/src/beads_mcp/__init__.py\n- npm-package/package.json\n- Hook templates\n- README.md\n- CHANGELOG.md (adds date)","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T16:29:32.299951-08:00","updated_at":"2025-12-29T17:02:15.202404-08:00","close_reason":"Version files updated to 0.41.0","deleted_at":"2025-12-29T17:02:15.202404-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-mol-p7i","title":"beads-release","description":"Beads release workflow - from version bump to verified release.\n\nThis formula orchestrates a complete release cycle:\n1. Preflight checks (clean git, up to date)\n2. Documentation updates (CHANGELOG, info.go)\n3. Version bump (all components)\n4. Git operations (commit, tag, push)\n5. CI verification (GitHub Actions)\n6. Artifact verification (GitHub, npm, PyPI)\n7. Local installation update\n8. Daemon restart\n\n## Usage\n\n```bash\nbd wisp create beads-release --var version=0.37.0\n```\n\nOr assign to a polecat:\n```bash\ngt sling beads/polecats/p1 --formula beads-release --var version=0.37.0\n```","status":"tombstone","priority":2,"issue_type":"epic","assignee":"beads/crew/emma","created_at":"2025-12-29T16:29:32.298557-08:00","updated_at":"2025-12-29T17:02:15.202404-08:00","close_reason":"v0.41.0 released to GitHub, PyPI, and npm","deleted_at":"2025-12-29T17:02:15.202404-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"epic"}
 {"id":"bd-mol-pze","title":"mol-beads-release","description":"Release checklist for beads version 0.99.0.\n\nThis molecule ensures all release steps are completed properly.\nVariable: 0.99.0 - target version (e.g., 0.35.0)\n\n## Step: update-release-notes\nUpdate cmd/bd/info.go with release notes for 0.99.0.\n\nAdd a new VersionChange entry at the top of versionChanges slice:\n```go\n{\n    Version: \"0.99.0\",\n    Date:    \"YYYY-MM-DD\",\n    Changes: []string{\n        \"NEW: Feature description\",\n        \"FIX: Bug fix description\",\n        \"IMPROVED: Enhancement description\",\n    },\n},\n```\n\nRun `git log --oneline v\u003cprevious\u003e..HEAD` to see what changed.\n\n## Step: update-changelog\nUpdate CHANGELOG.md with detailed release notes.\n\nAdd a new section after [Unreleased]:\n```markdown\n## [0.99.0] - YYYY-MM-DD\n\n### Added\n- **Feature name** (issue-id) - Description\n\n### Changed\n- **Change description** (issue-id)\n\n### Fixed\n- **Bug fix** (issue-id) - Description\n```\n\nSort by importance, not chronologically.\nNeeds: update-release-notes\n\n## Step: bump-version\nRun the version bump script.\n\n```bash\n./scripts/bump-version.sh 0.99.0\n```\n\nThis updates version in all files:\n- cmd/bd/version.go\n- .claude-plugin/*.json\n- integrations/beads-mcp/pyproject.toml\n- npm-package/package.json\n- Hook templates\n\nNeeds: update-changelog\n\n## Step: run-tests\nRun tests and verify lint passes.\n\n```bash\ngo test -short ./...\n```\n\nCI will run full lint, but fix any obvious issues first.\nNeeds: bump-version\n\n## Step: commit-release\nCommit the release changes.\n\n```bash\ngit add -A\ngit commit -m \"chore: bump version to v0.99.0\"\n```\n\nNeeds: run-tests\n\n## Step: push-and-tag\nPush commit and create release tag.\n\n```bash\ngit push origin main\ngit tag v0.99.0\ngit push origin v0.99.0\n```\n\nThis triggers GitHub Actions release workflow.\nNeeds: commit-release\n\n## Step: wait-for-ci\nWait for GitHub Actions to complete.\n\nMonitor: https://github.com/steveyegge/beads/actions\n\nCI will:\n- Build binaries via GoReleaser\n- Create GitHub Release with assets\n- Publish to npm (@beads/bd)\n- Publish to PyPI (beads-mcp)\n- Update Homebrew tap\n\nWait until all jobs succeed (~5-10 min).\nNeeds: push-and-tag\n\n## Step: verify-release\nVerify the release is complete.\n\n```bash\n# Check GitHub release\ngh release view v0.99.0\n\n# Check Homebrew\nbrew update \u0026\u0026 brew info steveyegge/beads/bd\n\n# Check npm\nnpm view @beads/bd version\n\n# Check PyPI\npip index versions beads-mcp\n```\n\nNeeds: wait-for-ci\n\n## Step: update-local\nUpdate local installations.\n\n```bash\n# Upgrade Homebrew\nbrew upgrade steveyegge/beads/bd\n\n# Or install from source\n./scripts/bump-version.sh 0.99.0 --install\n\n# Install MCP locally\npip install -e integrations/beads-mcp\n\n# Restart daemons\npkill -f \"bd daemon\" || true\n```\n\nVerify: `bd --version` shows 0.99.0\nNeeds: verify-release\n\n## Step: manual-publish\n(Optional) Manual publish if CI failed.\n\n```bash\n# npm (requires npm login)\n./scripts/bump-version.sh 0.99.0 --publish-npm\n\n# PyPI (requires TWINE credentials)\n./scripts/bump-version.sh 0.99.0 --publish-pypi\n\n# Or both\n./scripts/bump-version.sh 0.99.0 --publish-all\n```\n\nOnly needed if CI publishing failed.\nNeeds: wait-for-ci","status":"tombstone","priority":2,"issue_type":"molecule","created_at":"2025-12-27T00:32:46.883114-08:00","updated_at":"2025-12-28T01:24:39.202075-08:00","deleted_at":"2025-12-28T01:24:39.202075-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"molecule"}
-{"id":"bd-mol-rvn","title":"Review changes since last release","description":"Understand what's being released.\n\n```bash\ngit log $(git describe --tags --abbrev=0)..HEAD --oneline\n```\n\nCategorize changes:\n- Features (feat:)\n- Fixes (fix:)\n- Breaking changes\n- Documentation","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T16:29:32.299404-08:00","updated_at":"2025-12-29T17:02:15.202404-08:00","close_reason":"Reviewed 80+ commits since v0.40.0","deleted_at":"2025-12-29T17:02:15.202404-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-mol-v3g","title":"Verify PyPI package","description":"Confirm PyPI package published.\n\n```bash\npip index versions beads-mcp 2\u003e/dev/null | head -3\n```\n\nOr check: https://pypi.org/project/beads-mcp/\n\nShould show 0.39.0.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T19:34:09.559818-08:00","updated_at":"2025-12-28T01:24:39.202837-08:00","dependencies":[{"issue_id":"bd-mol-v3g","depends_on_id":"bd-mol-68e","type":"blocks","created_at":"2025-12-27T19:34:09.611251-08:00","created_by":"beads/crew/dave"}],"deleted_at":"2025-12-28T01:24:39.202837-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
 {"id":"bd-mol-vk9","title":"Push release tag","description":"Push the version tag to trigger CI release.\n\n```bash\ngit push origin v0.41.0\n```\n\nThis triggers GitHub Actions to build artifacts and publish.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T16:29:32.300854-08:00","updated_at":"2025-12-29T17:02:15.202404-08:00","close_reason":"Tag v0.41.0 pushed - CI triggered","deleted_at":"2025-12-29T17:02:15.202404-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-mol-vo3","title":"Create release tag","description":"Create annotated git tag.\n\n```bash\ngit tag -a v0.41.0 -m \"Release v0.41.0\"\n```\n\nVerify: `git tag -l | tail -5`","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T16:29:32.300491-08:00","updated_at":"2025-12-29T17:02:15.202404-08:00","close_reason":"Tag v0.41.0 created","deleted_at":"2025-12-29T17:02:15.202404-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
-{"id":"bd-mol-vq9","title":"Restart daemons","description":"Restart bd daemons to pick up new version.\n\n```bash\nbd daemons killall\n```\n\nDaemons will auto-restart with new version on next bd command.\n\nVerify:\n```bash\nbd daemons list\n```","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T17:09:12.46756-08:00","updated_at":"2025-12-29T17:09:32.480437-08:00","deleted_at":"2025-12-29T17:09:32.480437-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-mol-w8a","title":"Commit release","description":"Stage and commit all version changes.\n\n```bash\ngit add -A\ngit commit -m \"chore: Bump version to 0.99.0-test\"\n```\n\nReview the commit to ensure all expected files are included.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T17:09:12.465964-08:00","updated_at":"2025-12-29T17:09:32.480437-08:00","deleted_at":"2025-12-29T17:09:32.480437-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-mol-x56","title":"Update CHANGELOG.md","description":"Write the [Unreleased] section with all changes for 0.41.0.\n\nFormat: Keep a Changelog (https://keepachangelog.com)\n\nSections:\n- ### Added\n- ### Changed\n- ### Fixed\n- ### Documentation\n\nThe bump script will stamp the date automatically.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T16:29:32.29958-08:00","updated_at":"2025-12-29T17:02:15.202404-08:00","close_reason":"Updated CHANGELOG with 80+ commits","deleted_at":"2025-12-29T17:02:15.202404-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-mol-xga","title":"mol-beads-release","description":"Release checklist for beads version 0.37.0.\n\nThis molecule ensures all release steps are completed properly.\nVariable: 0.37.0 - target version (e.g., 0.35.0)\n\n## Step: update-release-notes\nUpdate cmd/bd/info.go with release notes for 0.37.0.\n\nAdd a new VersionChange entry at the top of versionChanges slice:\n```go\n{\n    Version: \"0.37.0\",\n    Date:    \"YYYY-MM-DD\",\n    Changes: []string{\n        \"NEW: Feature description\",\n        \"FIX: Bug fix description\",\n        \"IMPROVED: Enhancement description\",\n    },\n},\n```\n\nRun `git log --oneline v\u003cprevious\u003e..HEAD` to see what changed.\n\n## Step: update-changelog\nUpdate CHANGELOG.md with detailed release notes.\n\nAdd a new section after [Unreleased]:\n```markdown\n## [0.37.0] - YYYY-MM-DD\n\n### Added\n- **Feature name** (issue-id) - Description\n\n### Changed\n- **Change description** (issue-id)\n\n### Fixed\n- **Bug fix** (issue-id) - Description\n```\n\nSort by importance, not chronologically.\nNeeds: update-release-notes\n\n## Step: bump-version\nRun the version bump script.\n\n```bash\n./scripts/bump-version.sh 0.37.0\n```\n\nThis updates version in all files:\n- cmd/bd/version.go\n- .claude-plugin/*.json\n- integrations/beads-mcp/pyproject.toml\n- npm-package/package.json\n- Hook templates\n\nNeeds: update-changelog\n\n## Step: run-tests\nRun tests and verify lint passes.\n\n```bash\ngo test -short ./...\n```\n\nCI will run full lint, but fix any obvious issues first.\nNeeds: bump-version\n\n## Step: commit-release\nCommit the release changes.\n\n```bash\ngit add -A\ngit commit -m \"chore: bump version to v0.37.0\"\n```\n\nNeeds: run-tests\n\n## Step: push-and-tag\nPush commit and create release tag.\n\n```bash\ngit push origin main\ngit tag v0.37.0\ngit push origin v0.37.0\n```\n\nThis triggers GitHub Actions release workflow.\nNeeds: commit-release\n\n## Step: wait-for-ci\nWait for GitHub Actions to complete.\n\nMonitor: https://github.com/steveyegge/beads/actions\n\nCI will:\n- Build binaries via GoReleaser\n- Create GitHub Release with assets\n- Publish to npm (@beads/bd)\n- Publish to PyPI (beads-mcp)\n- Update Homebrew tap\n\nWait until all jobs succeed (~5-10 min).\nNeeds: push-and-tag\n\n## Step: verify-release\nVerify the release is complete.\n\n```bash\n# Check GitHub release\ngh release view v0.37.0\n\n# Check Homebrew\nbrew update \u0026\u0026 brew info steveyegge/beads/bd\n\n# Check npm\nnpm view @beads/bd version\n\n# Check PyPI\npip index versions beads-mcp\n```\n\nNeeds: wait-for-ci\n\n## Step: update-local\nUpdate local installations.\n\n```bash\n# Upgrade Homebrew\nbrew upgrade steveyegge/beads/bd\n\n# Or install from source\n./scripts/bump-version.sh 0.37.0 --install\n\n# Install MCP locally\npip install -e integrations/beads-mcp\n\n# Restart daemons\npkill -f \"bd daemon\" || true\n```\n\nVerify: `bd --version` shows 0.37.0\nNeeds: verify-release\n\n## Step: manual-publish\n(Optional) Manual publish if CI failed.\n\n```bash\n# npm (requires npm login)\n./scripts/bump-version.sh 0.37.0 --publish-npm\n\n# PyPI (requires TWINE credentials)\n./scripts/bump-version.sh 0.37.0 --publish-pypi\n\n# Or both\n./scripts/bump-version.sh 0.37.0 --publish-all\n```\n\nOnly needed if CI publishing failed.\nNeeds: wait-for-ci","status":"tombstone","priority":2,"issue_type":"molecule","created_at":"2025-12-26T01:09:49.836708-08:00","updated_at":"2025-12-28T01:24:39.204268-08:00","deleted_at":"2025-12-28T01:24:39.204268-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"molecule"}
@@ -590,7 +577,7 @@
 {"id":"bd-nim5","title":"Detect/prevent child→parent dependency anti-pattern","description":"## Problem\n\nWhen filing issues with dependencies, it's easy to fall into the \"temporal trap\":\n- Thinking \"Phase 1 comes before Phase 2\"\n- Writing `bd dep add phase1 phase2`\n- But that means \"phase1 depends on phase2\" (backwards!)\n\nA specific variant: children depending on their parent epic. This is ALWAYS wrong because:\n1. Parent-child relationship already captures the dependency (parent closes when children done)\n2. Child→parent dep creates a block: child can't start because parent is \"open\"\n3. Parent can't close because children aren't done\n4. Deadlock\n\n## Solution\n\n### 1. Prevent at creation (`bd dep add`)\n\nWhen user runs `bd dep add X Y`:\n- Check if X is a child of Y (X.id starts with Y.id + \".\")\n- If so, error: \"Cannot add dependency: X is already a child of Y. Children inherit dependency on parent completion via hierarchy.\"\n\n### 2. Detect in `bd doctor`\n\nAdd a check that finds all cases where:\n- Issue A depends on Issue B\n- A.id matches pattern B.id + \".*\" (A is child of B)\n\nReport as: \"Child→parent dependency detected (anti-pattern)\"\nOffer repair: \"Remove N backwards dependencies? [y/N]\"\n\n## Implementation\n\n- `dep_add.go`: Add parent-child check before adding dependency\n- `doctor.go`: Add backwards-dep detection to health checks\n","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-24T12:51:15.788796-08:00","updated_at":"2025-12-24T13:02:44.079093-08:00","closed_at":"2025-12-24T13:02:44.079093-08:00"}
 {"id":"bd-njrm","title":"Work on gt-8tmz.34: Expansion var overrides not implement...","description":"Work on gt-8tmz.34: Expansion var overrides not implemented. The ExpandRule.Vars field exists in internal/formula/types.go but is ignored during expansion in internal/formula/expand.go. Implement: 1) Pass rule.Vars to expandStep in ApplyExpansions, 2) Merge vars with formula defaults (rule.Vars wins), 3) Substitute vars in template placeholders, 4) Add test in expand_test.go. When done, commit and push to main.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-25T20:01:13.586558-08:00","updated_at":"2025-12-25T20:06:11.099142-08:00","closed_at":"2025-12-25T20:06:11.099142-08:00"}
 {"id":"bd-nkqx","title":"bd swarm validate command","description":"Add bd swarm validate to check epic structure for swarming.\n\n## Context\nBefore running a swarm, we need to validate the epic structure:\n- Are dependencies correct (not inverted)?\n- Are there orphaned issues?\n- Is the DAG well-formed?\n\nThe Ready Front model (not phases!) means dependencies define execution order.\nCommon mistake: 'Phase 1 before Phase 2' → inverted deps.\nCorrect thinking: 'Phase 2 needs Phase 1' → bd dep add phase2 phase1\n\n## Implementation\n1. New command: bd swarm validate \u003cepic-id\u003e\n2. Walk the dependency DAG from epic children\n3. Detect issues:\n   - Root issues with no dependents (orphans?)\n   - Leaf issues depending on nothing (missing deps?)\n   - Cycles (impossible)\n   - Disconnected subgraphs\n4. Report:\n   - Ready fronts (waves of parallel work)\n   - Estimated worker-sessions\n   - Max parallelism\n   - Warnings for potential issues\n\n## Reference\n~/gt/docs/swarm-architecture.md - 'The Ready Front Model' section\n\n## Acceptance\n- bd swarm validate \u003cepic\u003e runs\n- Reports ready fronts accurately\n- Warns about structural issues\n- Returns success/failure exit code","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-28T19:11:08.788203-08:00","created_by":"mayor","updated_at":"2025-12-28T19:34:57.218009-08:00","closed_at":"2025-12-28T19:34:57.218009-08:00"}
-{"id":"bd-nl2","title":"No logging/debugging for tombstone resurrection events","description":"Per the design document bd-zvg Open Question 1: Should resurrection log a warning? Recommendation was Yes. Currently, when an expired tombstone loses to a live issue (resurrection), there is no logging or debugging output. This makes it hard to understand why an issue reappeared. Recommendation: Add optional debug logging when resurrection occurs, e.g., Issue bd-abc resurrected (tombstone expired). Files: internal/merge/merge.go:359-366, 371-378, 400-405, 410-415","status":"closed","priority":4,"issue_type":"feature","assignee":"beads/polecats/amber","created_at":"2025-12-05T16:36:52.27525-08:00","updated_at":"2025-12-30T15:57:06.707152-08:00","closed_at":"2025-12-30T15:57:06.707152-08:00","close_reason":"Implemented debug logging for tombstone resurrection events. Added debug parameter to Merge3WayWithTTL and all 4 resurrection code paths now log 'Issue \u003cid\u003e resurrected (tombstone expired)' when debug mode is enabled."}
+{"id":"bd-nl2","title":"No logging/debugging for tombstone resurrection events","description":"Per the design document bd-zvg Open Question 1: Should resurrection log a warning? Recommendation was Yes. Currently, when an expired tombstone loses to a live issue (resurrection), there is no logging or debugging output. This makes it hard to understand why an issue reappeared. Recommendation: Add optional debug logging when resurrection occurs, e.g., Issue bd-abc resurrected (tombstone expired). Files: internal/merge/merge.go:359-366, 371-378, 400-405, 410-415","status":"closed","priority":4,"issue_type":"feature","assignee":"beads/polecats/amber","created_at":"2025-12-05T16:36:52.27525-08:00","updated_at":"2025-12-30T15:59:55.076809-08:00","closed_at":"2025-12-30T15:57:06.707152-08:00"}
 {"id":"bd-nlzv","title":"bd show --short flag for compact output","description":"## Request\nAdd a `--short` flag to `bd show` for compact, one-line output per issue.\n\n## Use Case\nWhen checking multiple issues quickly:\n```bash\nbd show bd-nkqx --short \u0026\u0026 bd show bd-oxgi --short\n```\n\nCurrently fails with \"unknown flag: --short\"\n\n## Expected Output\nSomething like:\n```\nbd-nkqx [closed] P1 task: Validate swarm schema design\nbd-oxgi [closed] P1 task: Add mol_type schema field to beads\n```\n\n## Format Suggestion\n`\u003cid\u003e [\u003cstatus\u003e] \u003cpriority\u003e \u003ctype\u003e: \u003ctitle\u003e`\n\nOptional: include blocker count if any, e.g. `(blocked by 2)`","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-28T21:26:18.955592-08:00","created_by":"mayor","updated_at":"2025-12-28T21:35:06.006865-08:00","closed_at":"2025-12-28T21:35:06.006865-08:00"}
 {"id":"bd-nmch","title":"Add EntityRef type for structured entity references","description":"Create EntityRef struct with Name, Platform, Org, ID fields. This is the foundation for HOP entity tracking. Can render as entity://hop/\u003cplatform\u003e/\u003corg\u003e/\u003cid\u003e when needed. Add to internal/types/types.go.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-22T17:53:25.104328-08:00","updated_at":"2025-12-22T17:58:00.014103-08:00","closed_at":"2025-12-22T17:58:00.014103-08:00","dependencies":[{"issue_id":"bd-nmch","depends_on_id":"bd-7pwh","type":"parent-child","created_at":"2025-12-22T17:53:43.325405-08:00","created_by":"daemon"}]}
 {"id":"bd-nppb","title":"Refinery Patrol","description":"Merge queue processor patrol loop with verification gates.","status":"tombstone","priority":2,"issue_type":"molecule","created_at":"2025-12-26T13:08:21.308272-08:00","updated_at":"2025-12-27T00:10:54.177947-08:00","deleted_at":"2025-12-27T00:10:54.177947-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"molecule"}
@@ -644,7 +631,7 @@
 {"id":"bd-pbh.7","title":"Update beads_mcp/__init__.py to 0.30.4","description":"Update __version__ in integrations/beads-mcp/src/beads_mcp/__init__.py:\n```python\n__version__ = \"0.30.4\"\n```\n\n\n```verify\ngrep -q '__version__ = \"0.30.4\"' integrations/beads-mcp/src/beads_mcp/__init__.py\n```","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.005334-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.7","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.005699-08:00","created_by":"daemon"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-pbh.8","title":"Update npm-package/package.json to 0.30.4","description":"Update version field in npm-package/package.json:\n```json\n\"version\": \"0.30.4\"\n```\n\n\n```verify\njq -e '.version == \"0.30.4\"' npm-package/package.json\n```","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.014905-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.8","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.01529-08:00","created_by":"daemon"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-pbh.9","title":"Update hook templates to 0.30.4","description":"Update bd-hooks-version comment in all 4 hook templates:\n- cmd/bd/templates/hooks/pre-commit\n- cmd/bd/templates/hooks/post-merge\n- cmd/bd/templates/hooks/pre-push\n- cmd/bd/templates/hooks/post-checkout\n\nEach should have:\n```bash\n# bd-hooks-version: 0.30.4\n```\n\n\n```verify\ngrep -l 'bd-hooks-version: 0.30.4' cmd/bd/templates/hooks/* | wc -l | grep -q '4'\n```","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.0248-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.9","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.025124-08:00","created_by":"daemon"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
-{"id":"bd-pdr2","title":"Consider backwards compatibility for ready() and list() return type change","description":"PR #481 changed the return types of `ready()` and `list()` from `list[Issue]` to `list[IssueMinimal] | CompactedResult`. This is a breaking change for MCP clients.\n\n## Impact Assessment\nBreaking change affects:\n- Any MCP client expecting `list[Issue]` from ready()\n- Any MCP client expecting `list[Issue]` from list()\n- Client code that accesses full Issue fields (description, design, acceptance_criteria, timestamps, dependencies, dependents)\n\n## Current Behavior\n- ready() returns `list[IssueMinimal] | CompactedResult`\n- list() returns `list[IssueMinimal] | CompactedResult`\n- show() still returns full `Issue` (good)\n\n## Considerations\n**Pros of current approach:**\n- Forces clients to use show() for full details (good for context efficiency)\n- Simple mental model (always use show for full data)\n- Documentation warns about this\n\n**Cons:**\n- Clients expecting list[Issue] will break\n- No graceful degradation option\n- No migration period\n\n## Potential Solutions\n1. Add optional parameter `full_details=false` to ready/list (would increase payload)\n2. Create separate tools: ready_minimal/list_minimal + ready_full/list_full\n3. Accept breaking change and document upgrade path (current approach)\n4. Version the MCP server and document migration guide\n\n## Recommendation\nCurrent approach (solution 3) is reasonable if:\n- Changelog clearly documents the breaking change\n- Migration guide provided to clients\n- Error handling is graceful for clients expecting specific fields","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-14T14:24:56.460465-08:00","updated_at":"2025-12-30T15:44:43.357467-08:00","closed_at":"2025-12-30T00:38:54.425634-08:00","close_reason":"Merged via refinery","dependencies":[{"issue_id":"bd-pdr2","depends_on_id":"bd-otf4","type":"discovered-from","created_at":"2025-12-14T14:24:56.461959-08:00","created_by":"stevey"}]}
+{"id":"bd-pdr2","title":"Consider backwards compatibility for ready() and list() return type change","description":"PR #481 changed the return types of `ready()` and `list()` from `list[Issue]` to `list[IssueMinimal] | CompactedResult`. This is a breaking change for MCP clients.\n\n## Impact Assessment\nBreaking change affects:\n- Any MCP client expecting `list[Issue]` from ready()\n- Any MCP client expecting `list[Issue]` from list()\n- Client code that accesses full Issue fields (description, design, acceptance_criteria, timestamps, dependencies, dependents)\n\n## Current Behavior\n- ready() returns `list[IssueMinimal] | CompactedResult`\n- list() returns `list[IssueMinimal] | CompactedResult`\n- show() still returns full `Issue` (good)\n\n## Considerations\n**Pros of current approach:**\n- Forces clients to use show() for full details (good for context efficiency)\n- Simple mental model (always use show for full data)\n- Documentation warns about this\n\n**Cons:**\n- Clients expecting list[Issue] will break\n- No graceful degradation option\n- No migration period\n\n## Potential Solutions\n1. Add optional parameter `full_details=false` to ready/list (would increase payload)\n2. Create separate tools: ready_minimal/list_minimal + ready_full/list_full\n3. Accept breaking change and document upgrade path (current approach)\n4. Version the MCP server and document migration guide\n\n## Recommendation\nCurrent approach (solution 3) is reasonable if:\n- Changelog clearly documents the breaking change\n- Migration guide provided to clients\n- Error handling is graceful for clients expecting specific fields","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-14T14:24:56.460465-08:00","updated_at":"2025-12-30T15:55:53.196577-08:00","closed_at":"2025-12-30T00:38:54.425634-08:00","dependencies":[{"issue_id":"bd-pdr2","depends_on_id":"bd-otf4","type":"discovered-from","created_at":"2025-12-14T14:24:56.461959-08:00","created_by":"stevey"}]}
 {"id":"bd-pe4s","title":"JSON test issue","description":"Line 1\nLine 2\nLine 3","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T16:14:36.969074-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-pgcs","title":"Clean up orphaned child issues (bd-cb64c226.*, bd-cbed9619.*)","description":"## Problem\n\nEvery bd command shows warnings about 12 orphaned child issues:\n- bd-cb64c226.1, .6, .8, .9, .10, .12, .13\n- bd-cbed9619.1, .2, .3, .4, .5\n\nThese are hierarchical IDs (parent.child format) where the parent issues no longer exist.\n\n## Impact\n\n- Clutters output of every bd command\n- Confusing for users\n- Indicates incomplete cleanup of deleted parent issues\n\n## Proposed Solution\n\n1. Delete the orphaned issues since their parents no longer exist:\n   ```bash\n   bd delete bd-cb64c226.1 bd-cb64c226.6 bd-cb64c226.8 ...\n   ```\n\n2. Or convert them to top-level issues if they contain useful content\n\n## Investigation Needed\n\n- What were the parent issues bd-cb64c226 and bd-cbed9619?\n- Why were they deleted without their children?\n- Should bd delete cascade to children automatically?","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T23:06:17.240571-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"}
 {"id":"bd-pgh","title":"Deacon Patrol","description":"Mayor's daemon patrol loop for handling callbacks, health checks, and cleanup.","status":"tombstone","priority":2,"issue_type":"molecule","created_at":"2025-12-26T21:20:47.62144-08:00","created_by":"deacon","updated_at":"2025-12-27T00:10:54.177166-08:00","deleted_at":"2025-12-27T00:10:54.177166-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"molecule"}
@@ -658,11 +645,11 @@
 {"id":"bd-pspk","title":"Fix: Empty coordinator shows blank in bd swarm create output","description":"Line 992 prints 'Coordinator: ' even when coordinator is empty string.\n\nShould either:\n- Print 'Coordinator: (none)'  \n- Skip the line entirely when empty\n\nMinor polish issue.","status":"closed","priority":3,"issue_type":"bug","created_at":"2025-12-28T21:38:28.651591-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-28T22:00:57.569797-08:00","closed_at":"2025-12-28T22:00:57.569797-08:00","dependencies":[{"issue_id":"bd-pspk","depends_on_id":"bd-2ubv","type":"parent-child","created_at":"2025-12-28T21:38:44.844669-08:00","created_by":"daemon"}]}
 {"id":"bd-pvu0","title":"Merge: bd-4opy","description":"branch: polecat/angharad\ntarget: main\nsource_issue: bd-4opy\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-23T00:24:44.057267-08:00","updated_at":"2025-12-23T01:33:25.730271-08:00","closed_at":"2025-12-23T01:33:25.730271-08:00"}
 {"id":"bd-pzw7","title":"gt handoff deadlock at handoff.go:125","notes":"When running 'gt handoff -m \"message\"' after successful MR submit, go panics with 'fatal error: all goroutines are asleep - deadlock\\!' at handoff.go:125. The shutdown request still appears to be sent successfully but the command crashes. Stack trace shows issue is in runHandoff select statement.","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-19T23:22:12.46315-08:00","updated_at":"2025-12-21T17:51:25.817355-08:00","closed_at":"2025-12-21T17:51:25.817355-08:00"}
-{"id":"bd-qe7j","title":"Code smell: Incomplete TODOs in formula/types.go","description":"internal/formula/types.go has multiple TODO items for features that are defined in the schema but not implemented:\n\n- Line 170: Expand field not implemented in bd cook\n- Line 174: ExpandVars field not implemented\n- Line 179: Gate integration pending (bd-udsi gates)\n- Line 186: Condition evaluation not implemented\n- Line 210: Additional expansion features\n\n**Problem:**\n- Schema defines features that aren't implemented\n- Can confuse users who try to use these fields\n- Creates maintenance burden of unused code paths\n\n**Acceptance Criteria:**\n- [ ] Either implement the features OR\n- [ ] Remove unimplemented fields from schema OR\n- [ ] Document clearly which fields are future-only\n- [ ] Update related beads issues if they exist","status":"closed","priority":3,"issue_type":"chore","created_at":"2025-12-28T18:59:59.460434-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-30T15:44:43.358286-08:00","closed_at":"2025-12-30T00:39:56.504522-08:00","close_reason":"Merged via refinery","dependencies":[{"issue_id":"bd-qe7j","depends_on_id":"bd-ox1o","type":"blocks","created_at":"2025-12-28T19:00:23.747872-08:00","created_by":"daemon"}]}
+{"id":"bd-qe7j","title":"Code smell: Incomplete TODOs in formula/types.go","description":"internal/formula/types.go has multiple TODO items for features that are defined in the schema but not implemented:\n\n- Line 170: Expand field not implemented in bd cook\n- Line 174: ExpandVars field not implemented\n- Line 179: Gate integration pending (bd-udsi gates)\n- Line 186: Condition evaluation not implemented\n- Line 210: Additional expansion features\n\n**Problem:**\n- Schema defines features that aren't implemented\n- Can confuse users who try to use these fields\n- Creates maintenance burden of unused code paths\n\n**Acceptance Criteria:**\n- [ ] Either implement the features OR\n- [ ] Remove unimplemented fields from schema OR\n- [ ] Document clearly which fields are future-only\n- [ ] Update related beads issues if they exist","status":"closed","priority":3,"issue_type":"chore","created_at":"2025-12-28T18:59:59.460434-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-30T15:55:53.197621-08:00","closed_at":"2025-12-30T00:39:56.504522-08:00","dependencies":[{"issue_id":"bd-qe7j","depends_on_id":"bd-ox1o","type":"blocks","created_at":"2025-12-28T19:00:23.747872-08:00","created_by":"daemon"}]}
 {"id":"bd-qioh","title":"Standardize error handling: replace direct fmt.Fprintf+os.Exit with FatalError","description":"Standardize error handling in cmd/bd/ using FatalError pattern.\n\n## Current State\n~200+ instances of direct `fmt.Fprintf(os.Stderr, ...) + os.Exit(1)` pattern scattered across cmd/bd/*.go files.\n\n## Target Pattern\n\nUse existing FatalError helper (or create if missing):\n\n```go\n// In cmd/bd/helpers.go or similar\nfunc FatalError(format string, args ...interface{}) {\n    fmt.Fprintf(os.Stderr, \"Error: \"+format+\"\\n\", args...)\n    os.Exit(1)\n}\n\nfunc FatalErrorf(err error, context string) {\n    fmt.Fprintf(os.Stderr, \"Error: %s: %v\\n\", context, err)\n    os.Exit(1)\n}\n```\n\n## Transformation\n\n```go\n// Before\nfmt.Fprintf(os.Stderr, \"Error: %v\\n\", err)\nos.Exit(1)\n\n// After\nFatalError(\"%v\", err)\n\n// Before\nfmt.Fprintf(os.Stderr, \"Error: invalid --since duration: %v\\n\", err)\nos.Exit(1)\n\n// After\nFatalError(\"invalid --since duration: %v\", err)\n```\n\n## Files to Update (by occurrence count)\nRun: `grep -c \"os.Exit(1)\" cmd/bd/*.go | sort -t: -k2 -rn | head -20`\n\nPriority files (highest occurrence):\n- close.go\n- show.go\n- sync.go\n- init.go\n- list.go\n- create.go\n- update.go\n\n## Implementation Steps\n\n1. **Check if FatalError exists** in cmd/bd/helpers.go or create it\n2. **Create migration script** or use sed:\n   ```bash\n   # Find patterns to replace\n   grep -rn \"fmt.Fprintf(os.Stderr.*Error.*\\n.*os.Exit(1)\" cmd/bd/\n   ```\n3. **Replace systematically** file by file\n4. **Run tests** after each file to verify behavior unchanged\n5. **Run linter** to catch any missed patterns\n\n## Verification\n```bash\n# Count remaining direct exits (should be near zero)\ngrep -c \"os.Exit(1)\" cmd/bd/*.go | awk -F: \"{sum+=\\$2} END {print sum}\"\n\n# Run tests\ngo test -short ./cmd/bd/...\n```\n\n## Success Criteria\n- All error exits use FatalError/FatalErrorf\n- Consistent \"Error: \" prefix on all error messages\n- Tests pass\n- No behavior changes (exit codes remain 1)","notes":"## Progress (Dec 2025)\n\nStandardized error handling in 3 major files:\n- compact.go: All 48 os.Exit(1) calls converted to FatalError\n- sync.go: All error patterns converted (kept 1 valid summary exit)\n- migrate.go: 4 patterns converted\n\n## Remaining Work\n~326 fmt.Fprintf(os.Stderr, \"Error:\") patterns remain across ~30 files.\nHigh-count files remaining: show.go (16), dep.go (14), gate.go (28), init.go (11).\n\n## Verification\n- Build compiles successfully\n- Tests pass","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-16T18:17:19.309394-08:00","updated_at":"2025-12-23T14:14:37.939802-08:00","closed_at":"2025-12-23T14:14:37.939802-08:00","dependencies":[{"issue_id":"bd-qioh","depends_on_id":"bd-iz5t","type":"parent-child","created_at":"2025-12-23T12:44:07.43514-08:00","created_by":"daemon"}]}
 {"id":"bd-qket","title":"Add computed .parent field to JSON output for convenience","description":"Currently parent is only in dependencies[]. Add a top-level .parent field to JSON/JSONL output that extracts the parent-child dependency for easier querying.\n\nExample:\n```bash\n# Current (works but verbose):\nbd show \u003cid\u003e --json | jq '.[0].dependencies[] | select(.dependency_type == \"parent-child\") | .id'\n\n# Desired:\nbd show \u003cid\u003e --json | jq '.[0].parent'\n```\n\nLow priority enhancement.","status":"closed","priority":4,"issue_type":"feature","created_at":"2025-12-27T23:32:44.24217-08:00","created_by":"beads/crew/emma","updated_at":"2025-12-28T02:24:31.453442-08:00","closed_at":"2025-12-28T02:24:31.453442-08:00"}
 {"id":"bd-qkw9","title":"Run bump-version.sh {{version}}","description":"Run ./scripts/bump-version.sh {{version}} to update version in all files","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:55:58.841424-08:00","updated_at":"2025-12-20T17:59:26.262877-08:00","closed_at":"2025-12-20T01:18:48.99813-08:00","dependencies":[{"issue_id":"bd-qkw9","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:14.786027-08:00","created_by":"daemon"}]}
-{"id":"bd-qobn","title":"Code smell: 20+ global variables in main.go","description":"main.go lines 63-103 have over 20 global variables managing command-line state, daemon connection, auto-flush, auto-import, and error handling.\n\n**Globals include:**\ndbPath, actor, store, jsonOutput, daemonStatus, daemonClient, noDaemon, rootCtx, rootCancel, autoFlushEnabled, flushMutex, storeMutex, storeActive, flushFailureCount, lastFlushError, flushManager, hookRunner, skipFinalFlush, autoImportEnabled, versionUpgradeDetected, previousVersion, upgradeAcknowledged\n\n**Problem:**\n- Global state makes testing difficult\n- Race conditions possible between goroutines\n- Hard to track which functions modify which globals\n\n**Acceptance Criteria:**\n- [ ] Create CommandContext struct to hold runtime state\n- [ ] Pass context through command execution\n- [ ] Reduce global count to essential minimum\n- [ ] Tests pass","status":"hooked","priority":3,"issue_type":"chore","assignee":"beads/polecats/onyx","created_at":"2025-12-28T18:59:27.551044-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-30T15:48:37.952767-08:00","dependencies":[{"issue_id":"bd-qobn","depends_on_id":"bd-ox1o","type":"blocks","created_at":"2025-12-28T19:00:23.651276-08:00","created_by":"daemon"}]}
+{"id":"bd-qobn","title":"Code smell: 20+ global variables in main.go","description":"main.go lines 63-103 have over 20 global variables managing command-line state, daemon connection, auto-flush, auto-import, and error handling.\n\n**Globals include:**\ndbPath, actor, store, jsonOutput, daemonStatus, daemonClient, noDaemon, rootCtx, rootCancel, autoFlushEnabled, flushMutex, storeMutex, storeActive, flushFailureCount, lastFlushError, flushManager, hookRunner, skipFinalFlush, autoImportEnabled, versionUpgradeDetected, previousVersion, upgradeAcknowledged\n\n**Problem:**\n- Global state makes testing difficult\n- Race conditions possible between goroutines\n- Hard to track which functions modify which globals\n\n**Acceptance Criteria:**\n- [ ] Create CommandContext struct to hold runtime state\n- [ ] Pass context through command execution\n- [ ] Reduce global count to essential minimum\n- [ ] Tests pass","status":"open","priority":3,"issue_type":"chore","assignee":"beads/crew/grip","created_at":"2025-12-28T18:59:27.551044-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-30T15:55:53.198763-08:00","dependencies":[{"issue_id":"bd-qobn","depends_on_id":"bd-ox1o","type":"blocks","created_at":"2025-12-28T19:00:23.651276-08:00","created_by":"daemon"}]}
 {"id":"bd-qpf3","title":"Bug: bd swarm create allows duplicate swarm molecules","description":"Running `bd swarm create \u003cepic\u003e` twice creates two swarm molecules for the same epic.\n\nShould check for existing swarm molecule linked to the epic and either:\n1. Error with 'swarm already exists: \u003cid\u003e'\n2. Warn and return existing swarm ID\n3. Add --force flag to allow creating another\n\nCheck by querying for molecules with mol_type=swarm that have a relates-to dependency to the epic.","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-28T21:38:04.252522-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-28T21:59:59.35812-08:00","closed_at":"2025-12-28T21:59:59.35812-08:00","dependencies":[{"issue_id":"bd-qpf3","depends_on_id":"bd-2ubv","type":"parent-child","created_at":"2025-12-28T21:38:44.740671-08:00","created_by":"daemon"}]}
 {"id":"bd-qph3","title":"Consolidate git context into single cached struct","description":"Code review finding from bd-7di fix.\n\nCurrently there are 3 separate caches:\n- isWorktreeOnce/isWorktreeResult\n- mainRepoRootOnce/mainRepoRootResult/mainRepoRootErr  \n- repoRootOnce/repoRootResult\n\nThese have redundant git calls - e.g. both isWorktreeUncached() and getMainRepoRootUncached() call getGitDirNoError(\"--git-common-dir\").\n\nCould consolidate into a single cached struct:\n```go\ntype gitContext struct {\n    gitDir     string\n    commonDir  string\n    repoRoot   string\n    isWorktree bool\n}\n```\n\nThis would reduce git calls further and simplify ResetCaches().\n\nFile: internal/git/gitdir.go","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-25T22:08:53.829215-08:00","updated_at":"2025-12-27T21:49:38.611332-08:00","closed_at":"2025-12-27T21:49:38.611332-08:00"}
 {"id":"bd-qqc","title":"Release v{{version}}","description":"SUPERSEDED by bd-7bs4. Use the new proto for releases.\n\n","status":"tombstone","priority":1,"issue_type":"epic","created_at":"2025-12-18T12:59:00.610371-08:00","updated_at":"2025-12-24T16:25:31.181723-08:00","labels":["template"],"deleted_at":"2025-12-24T16:25:31.181723-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"epic"}
@@ -679,7 +666,7 @@
 {"id":"bd-qqc.7","title":"Push release v{{version}} to remote","description":"Push the commit and tag:\n\n```bash\ngit push \u0026\u0026 git push --tags\n```\n\nVerify on GitHub that the tag appears in releases.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-18T13:00:26.933082-08:00","updated_at":"2025-12-24T16:25:30.689807-08:00","dependencies":[{"issue_id":"bd-qqc.7","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T13:00:26.933687-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.7","depends_on_id":"bd-qqc.6","type":"blocks","created_at":"2025-12-18T13:01:12.711161-08:00","created_by":"stevey"}],"deleted_at":"2025-12-24T16:25:30.689807-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
 {"id":"bd-qqc.8","title":"Create and push git tag v{{version}}","description":"Create the release tag and push it:\n\n```bash\ngit tag v{{version}}\ngit push origin v{{version}}\n```\n\nThis triggers the GoReleaser GitHub Action to build release binaries.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:34.659927-08:00","updated_at":"2025-12-24T16:25:30.608841-08:00","dependencies":[{"issue_id":"bd-qqc.8","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:34.660248-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.8","depends_on_id":"bd-vgi5","type":"blocks","created_at":"2025-12-18T22:43:21.209529-08:00","created_by":"daemon"}],"deleted_at":"2025-12-24T16:25:30.608841-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
 {"id":"bd-qqc.9","title":"Update Homebrew formula","description":"Update the Homebrew tap with new version:\n\n```bash\n./scripts/update-homebrew.sh {{version}}\n```\n\nThis script waits for GitHub Actions to complete (~5 min), then updates the formula with new SHA256 hashes.\n\nAfter running, verify the formula with:\n\n```bash\nbrew info steveyegge/beads/bd\n```","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:35.815096-08:00","updated_at":"2025-12-24T16:25:30.525596-08:00","dependencies":[{"issue_id":"bd-qqc.9","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:35.816752-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.9","depends_on_id":"bd-qqc.8","type":"blocks","created_at":"2025-12-18T22:43:21.332955-08:00","created_by":"daemon"}],"deleted_at":"2025-12-24T16:25:30.525596-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"}
-{"id":"bd-qsbn","title":"swarm status: Handle external dependencies and error cases","description":"Three issues: (1) Silent error swallowing - GetDependencyRecords errors are silently continued, but analyzeEpicForSwarm returns errors. Inconsistent. (2) External dependencies ignored - if issue depends on something outside epic thats still open, we mark it Ready incorrectly. (3) Command usage string says [epic-id] (optional) but requires exactly 1 arg. File: cmd/bd/swarm.go","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-28T21:31:08.574846-08:00","created_by":"beads/crew/emma","updated_at":"2025-12-30T15:44:43.363959-08:00","closed_at":"2025-12-30T00:36:28.565331-08:00","close_reason":"Fixed all three issues: (1) Made error handling consistent - analyzeEpicForSwarm now adds warnings for GetDependencyRecords failures instead of returning errors. (2) External dependencies now checked in getSwarmStatus - open external deps block issues. (3) Usage strings fixed to use \u003cepic-id\u003e instead of [epic-id] for required arguments."}
+{"id":"bd-qsbn","title":"swarm status: Handle external dependencies and error cases","description":"Three issues: (1) Silent error swallowing - GetDependencyRecords errors are silently continued, but analyzeEpicForSwarm returns errors. Inconsistent. (2) External dependencies ignored - if issue depends on something outside epic thats still open, we mark it Ready incorrectly. (3) Command usage string says [epic-id] (optional) but requires exactly 1 arg. File: cmd/bd/swarm.go","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-28T21:31:08.574846-08:00","created_by":"beads/crew/emma","updated_at":"2025-12-30T15:55:53.199693-08:00","closed_at":"2025-12-30T00:36:28.565331-08:00"}
 {"id":"bd-qvpn","title":"Merge: jasper-1767138512869","description":"branch: polecat/jasper-1767138512869\ntarget: main\nsource_issue: jasper-1767138512869\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T15:51:49.011389-08:00","created_by":"beads/polecats/jasper","updated_at":"2025-12-30T15:51:49.011389-08:00"}
 {"id":"bd-qy37","title":"Work on gt-8tmz.36: Validate expanded step IDs are unique...","description":"Work on gt-8tmz.36: Validate expanded step IDs are unique. After ApplyExpansions in internal/formula/expand.go, new steps can be created that might have duplicate IDs. Add validation in ApplyExpansions to check for duplicate step IDs after expansion. If duplicates found, return an error with the duplicate IDs. Add test in expand_test.go. When done, commit and push to main.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-25T20:01:27.048018-08:00","updated_at":"2025-12-25T20:04:42.594254-08:00","closed_at":"2025-12-25T20:04:42.594254-08:00"}
 {"id":"bd-r06v","title":"Merge: bd-phtv","description":"branch: polecat/Pinner\ntarget: main\nsource_issue: bd-phtv\nrig: beads","status":"closed","priority":1,"issue_type":"merge-request","created_at":"2025-12-23T13:48:16.853715-08:00","updated_at":"2025-12-23T19:12:08.342414-08:00","closed_at":"2025-12-23T19:12:08.342414-08:00"}
@@ -715,7 +702,7 @@
 {"id":"bd-s00m.4","title":"Migration: Convert pinned work items to hooked","description":"Migrate existing pinned beads that represent work-on-hook to use 'hooked' status.\n\n## Migration Logic\n\n```sql\nUPDATE issues \nSET status = 'hooked'\nWHERE status = 'pinned' \n  AND issue_type NOT IN ('agent', 'role')\n```\n\n## What Stays Pinned\n\n- Agent identity beads (gt-mayor, gt-witness-gastown, etc.)\n- Role definition beads (gt-mayor-role, etc.)\n\n## What Becomes Hooked\n\n- Molecules on hooks (mol_type field set)\n- Regular issues/tasks that were pinned to hooks\n\n## Verification\n\nAfter migration:\n- bd list --status=pinned should only show agents/roles\n- bd list --status=hooked should show work on hooks","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-28T22:17:13.872171-08:00","created_by":"stevey","updated_at":"2025-12-28T22:36:09.039612-08:00","closed_at":"2025-12-28T22:36:09.039612-08:00","dependencies":[{"issue_id":"bd-s00m.4","depends_on_id":"bd-s00m","type":"parent-child","created_at":"2025-12-28T22:17:13.872786-08:00","created_by":"daemon"},{"issue_id":"bd-s00m.4","depends_on_id":"bd-s00m.1","type":"blocks","created_at":"2025-12-28T22:17:22.168228-08:00","created_by":"daemon"}]}
 {"id":"bd-s0qf","title":"GH#405: Fix prefix parsing with hyphens - multi-hyphen prefixes parsed incorrectly","description":"Fixed: ExtractIssuePrefix was falling back to first-hyphen for word-like suffixes, breaking multi-hyphen prefixes like 'hacker-news' and 'me-py-toolkit'.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:13:56.951359-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"}
 {"id":"bd-s1pz","title":"Merge: bd-u2sc.4","description":"branch: polecat/Logger\ntarget: main\nsource_issue: bd-u2sc.4\nrig: beads","status":"closed","priority":3,"issue_type":"merge-request","created_at":"2025-12-23T13:45:52.412757-08:00","updated_at":"2025-12-23T19:12:08.356689-08:00","closed_at":"2025-12-23T19:12:08.356689-08:00"}
-{"id":"bd-s2t","title":"wish: a 'continue' or similar cmd/flag which means alter last issue","description":"so many time I create an issue and then have another thought: 'oh, before I did X and it crashed there was ZZZ happening' or 'actually that is P4 not P2'. It would be nice if when `bd {cmd}` is used without a {title} or {id} it just adds or updates the most recently touched issue.","status":"open","priority":3,"issue_type":"task","assignee":"beads/polecats/opal","created_at":"2025-12-08T06:46:37.529160416-07:00","updated_at":"2025-12-30T15:05:14.672768-08:00"}
+{"id":"bd-s2t","title":"wish: a 'continue' or similar cmd/flag which means alter last issue","description":"so many time I create an issue and then have another thought: 'oh, before I did X and it crashed there was ZZZ happening' or 'actually that is P4 not P2'. It would be nice if when `bd {cmd}` is used without a {title} or {id} it just adds or updates the most recently touched issue.","status":"open","priority":3,"issue_type":"task","assignee":"beads/polecats/opal","created_at":"2025-12-08T06:46:37.529160416-07:00","updated_at":"2025-12-30T15:55:53.200719-08:00"}
 {"id":"bd-s5kf","title":"Merge: onyx-1767083477016","description":"branch: polecat/onyx-1767083477016\ntarget: main\nsource_issue: onyx-1767083477016\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T00:37:08.214926-08:00","created_by":"beads/polecats/onyx","updated_at":"2025-12-30T00:54:59.041942-08:00","closed_at":"2025-12-30T00:54:59.041942-08:00","close_reason":"Branch polecat/onyx-1767083477016 no longer exists on remote"}
 {"id":"bd-sal9","title":"bd mol current: soft cursor showing current/next step","description":"Add bd mol current command for molecule navigation orientation.\n\n## Usage\n\nbd mol current [mol-id]\n\nIf mol-id given, show status for that molecule.\nIf not given, infer from in_progress issues assigned to current agent.\n\n## Output\n\nYou're working on molecule gt-abc (Feature X)\n\n  [done] gt-abc.1: Design\n  [done] gt-abc.2: Scaffold  \n  [done] gt-abc.3: Implement\n  [current] gt-abc.4: Write tests [in_progress] \u003c- YOU ARE HERE\n  [pending] gt-abc.5: Documentation\n  [pending] gt-abc.6: Exit decision\n\nProgress: 3/6 steps complete\n\n## Key behaviors\n- Shows full molecule structure with status indicators\n- Highlights current in_progress step\n- If no in_progress, highlights first ready step\n- Works without explicit cursor tracking (inferred from state)\n\n## Implementation notes\n- Query children of mol-id\n- Sort by dependency order\n- Find first in_progress or first ready\n- Format with status indicators\n\n## Gas Town integration\n- gt-lz13: Update templates with nav workflow\n- gt-um6q: Update docs with nav workflow","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-12-22T17:03:30.245964-08:00","updated_at":"2025-12-22T17:36:31.936007-08:00","closed_at":"2025-12-22T17:36:31.936007-08:00"}
 {"id":"bd-sh4c","title":"Improve test coverage for cmd/bd/setup (28.4% → 50%)","description":"The setup package has only 28.4% test coverage. Setup commands are critical for first-time user experience.\n\nCurrent coverage: 28.4%\nTarget coverage: 50%","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:04.409346-08:00","updated_at":"2025-12-23T22:37:13.494999-08:00","closed_at":"2025-12-23T22:37:13.494999-08:00"}
@@ -723,7 +710,7 @@
 {"id":"bd-siz1","title":"GH#532: bd sync circular error (suggests running bd sync)","description":"bd sync error message recommends running bd sync to fix the bd sync error. Fix error handling to provide useful guidance. See GitHub issue #532.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:04:00.543573-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"}
 {"id":"bd-sj5y","title":"Daemon should be singleton and aggressively kill stale instances","description":"Found 2 bd daemons running (PIDs 76868, 77515) during shutdown. The daemon should:\n\n1. Be a singleton - only one instance per rig allowed\n2. On startup, check for existing daemon and kill it before starting\n3. Use a PID file or lock file to enforce this\n\nCurrently stale daemons can accumulate, causing confusion and resource waste.","notes":"**Investigation 2025-12-21:**\n\nThe singleton mechanism is already implemented and working correctly:\n\n1. **daemon.lock** uses flock (exclusive non-blocking) to prevent duplicate daemons\n2. **bd.sock.startlock** coordinates concurrent auto-starts via O_CREATE|O_EXCL\n3. **Registry** tracks all daemons globally in ~/.beads/registry.json\n\nTesting shows:\n- Trying to start a second daemon gives: 'Error: daemon already running (PID X)'\n- Multiple daemons for *different* rigs is expected/correct behavior\n\nThe original report ('Found 2 bd daemons running PIDs 76868, 77515') was likely:\n1. Two daemons for different rigs (expected), OR\n2. An edge case that's since been fixed\n\nConsider closing as RESOLVED or clarifying the original scenario.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-21T01:29:14.778949-08:00","updated_at":"2025-12-21T11:27:34.302585-08:00","closed_at":"2025-12-21T11:27:34.302585-08:00"}
 {"id":"bd-soig","title":"Sling reports 'already pinned' but mol status shows empty hook","description":"During swarm operations, gt sling reported beads were 'already pinned' but gt mol status showed nothing on the hook.\n\n**Observed:**\n```\n$ gt sling bd-9btu beads/Nux\nError: bead bd-9btu is already pinned to gt-beads-nux\n\n$ gt mol status beads/Nux\nNothing on hook - no work slung\n```\n\n**Expected:**\nIf a bead is pinned, mol status should show it. If mol status shows empty, sling should work.\n\n**Workaround:**\nUsed --force flag to re-sling, which worked.\n\n**Root cause hypothesis:**\nAgent bead state may be stored in town beads but polecat's local view doesn't see it, or the pin record exists but session state is stale.","status":"closed","priority":3,"issue_type":"bug","created_at":"2025-12-28T16:17:50.561021-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-28T22:14:22.838484-08:00","closed_at":"2025-12-28T22:14:22.838484-08:00"}
-{"id":"bd-srsk","title":"Gate eval: Add error visibility for gh CLI failures","description":"Currently evalGHRunGate and evalGHPRGate silently swallow errors when the gh CLI fails (lines 738-741, 780-783 in gate.go).\n\nThis makes debugging difficult - if gh isn't installed, auth fails, or network issues occur, gates silently stall forever with no indication of why.\n\nOptions:\n1. Add debug logging when gh fails\n2. Return error info in the skipped list for aggregate reporting\n3. Add a --verbose flag to gate eval that shows failures\n\nLow priority since the fail-safe behavior (don't close gate on error) is correct.","status":"hooked","priority":3,"issue_type":"task","created_at":"2025-12-25T23:13:11.718635-08:00","updated_at":"2025-12-30T15:44:43.346871-08:00"}
+{"id":"bd-srsk","title":"Gate eval: Add error visibility for gh CLI failures","description":"Currently evalGHRunGate and evalGHPRGate silently swallow errors when the gh CLI fails (lines 738-741, 780-783 in gate.go).\n\nThis makes debugging difficult - if gh isn't installed, auth fails, or network issues occur, gates silently stall forever with no indication of why.\n\nOptions:\n1. Add debug logging when gh fails\n2. Return error info in the skipped list for aggregate reporting\n3. Add a --verbose flag to gate eval that shows failures\n\nLow priority since the fail-safe behavior (don't close gate on error) is correct.","status":"hooked","priority":3,"issue_type":"task","created_at":"2025-12-25T23:13:11.718635-08:00","updated_at":"2025-12-30T15:55:53.202019-08:00"}
 {"id":"bd-su45","title":"Protect pinned issues from bd cleanup/compact","description":"Update bd cleanup and bd compact to never delete pinned issues, even if they are closed. Pinned issues should persist indefinitely as reference material.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:46.204783-08:00","updated_at":"2025-12-19T17:43:35.712617-08:00","closed_at":"2025-12-19T00:43:04.06406-08:00","dependencies":[{"issue_id":"bd-su45","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.64582-08:00","created_by":"daemon"},{"issue_id":"bd-su45","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.857586-08:00","created_by":"daemon"}]}
 {"id":"bd-sumr","title":"Merge: bd-t4sb","description":"branch: polecat/capable\ntarget: main\nsource_issue: bd-t4sb\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:22:21.343724-08:00","updated_at":"2025-12-20T23:17:26.997992-08:00","closed_at":"2025-12-20T23:17:26.997992-08:00"}
 {"id":"bd-svb5","title":"GH#505: Add bd reset/wipe command","description":"Add command to cleanly reset/wipe beads database. User reports painful manual process to start fresh. See GitHub issue #505.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:03:42.160966-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"}
@@ -795,7 +782,7 @@
 {"id":"bd-x0zl","title":"Remove/relocate pin command (covered by mol commands)","description":"## Task\nReview and potentially remove `bd pin` as it overlaps with mol commands.\n\n## Analysis needed\n- `bd pin` sets the pinned flag on issues for agent work assignment\n- `bd hook` shows what's pinned to an agent\n- `bd unpin` removes the pinned flag\n- `bd mol` commands deal with molecules/templates\n\n## Options\n1. **Keep as-is**: pin/unpin are about work assignment, mol is about templates\n2. **Move under mol**: `bd mol pin`, `bd mol unpin` \n3. **Deprecate**: If mol commands fully cover the use case\n\n## Decision criteria\n- Are pin/unpin used independently of mol workflows?\n- Does Gas Town (gt) use these commands?\n\n## Recommendation\nCheck gt codebase for usage patterns before deciding. If pin/unpin are primarily used with mol workflows, consolidate under mol. If used independently, keep as-is.\n\n## Files potentially affected\n- cmd/bd/pin.go\n- cmd/bd/unpin.go\n- cmd/bd/hook.go\n- cmd/bd/mol.go (if moving)\n","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-27T15:11:09.799471-08:00","created_by":"mayor","updated_at":"2025-12-27T16:01:53.437698-08:00","closed_at":"2025-12-27T16:01:53.437698-08:00","comments":[{"id":6,"issue_id":"bd-x0zl","author":"stevey","text":"## Analysis Complete\n\n**Findings:**\n- bd pin, bd unpin, bd hook are **never used** by gt\n- gt uses bd update --status=pinned --assignee=agent instead (10 usages)\n- Code comment says 'pinned field is cosmetic for bd hook visibility'\n- gt mol status provides equivalent hook inspection\n\n**Recommendation:** Remove all three commands as dead code.","created_at":"2025-12-28T00:00:14Z"}]}
 {"id":"bd-x1xs","title":"Work on beads-1ra: Add molecules.jsonl as separate catalo...","description":"Work on beads-1ra: Add molecules.jsonl as separate catalog file for template molecules","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T20:17:44.840032-08:00","updated_at":"2025-12-21T15:28:17.633716-08:00","closed_at":"2025-12-21T15:28:17.633716-08:00"}
 {"id":"bd-x2bd","title":"Merge: bd-likt","description":"branch: polecat/Gater\ntarget: main\nsource_issue: bd-likt\nrig: beads","status":"closed","priority":3,"issue_type":"merge-request","created_at":"2025-12-23T13:46:27.091846-08:00","updated_at":"2025-12-23T19:12:08.355637-08:00","closed_at":"2025-12-23T19:12:08.355637-08:00"}
-{"id":"bd-x2ht","title":"Add BD_AGENT_MODE for ultra-compact output","description":"Optional agent-optimized output mode triggered by BD_AGENT_MODE=1 env var:\n\n- Compact format: just ID and title per line\n- Default to open/in_progress only\n- No colors, no emojis\n- Lower default limit (~20)\n- One-line summaries\n\nThis is independent but benefits from TTY detection infrastructure.\n\nConsider auto-detecting agent context via CLAUDE_CODE or similar env vars.","notes":"## Implementation Plan\n\n### Trigger\n```bash\nBD_AGENT_MODE=1 bd list\n```\n\nOr auto-detect common agent environments:\n```go\nfunc IsAgentMode() bool {\n    if os.Getenv(\"BD_AGENT_MODE\") != \"\" {\n        return true\n    }\n    // Auto-detect known agent contexts\n    if os.Getenv(\"CLAUDE_CODE\") != \"\" {\n        return true\n    }\n    // Add other agent env vars as discovered\n    return false\n}\n```\n\n### Code Changes\n\n1. **Add agent output format** (cmd/bd/list.go):\n```go\nif ui.IsAgentMode() {\n    // Ultra-compact: just ID and title\n    for _, issue := range issues {\n        fmt.Printf(\"%s: %s\\n\", issue.ID, issue.Title)\n    }\n    return\n}\n```\n\n2. **Agent mode defaults**:\n```go\nif ui.IsAgentMode() {\n    if limit == 0 {\n        limit = 20 // Lower default for agents\n    }\n    if status == \"\" {\n        // Only actionable work\n        filter.Status = []types.Status{\"open\", \"in_progress\"}\n    }\n}\n```\n\n### Output Format (Agent Mode)\n```\nbd-mypl: Default bd list to non-closed issues\nbd-v5fn: Add default limit to bd list (50 issues)\nbd-jdz3: Add pager support to bd list\n```\n\nNo colors, no emojis, no brackets, no priority display.\nJust ID + title for maximum context efficiency.\n\n### Testing\n- `BD_AGENT_MODE=1 bd list` outputs compact format\n- Verify no ANSI codes in output\n- Verify default limit is 20\n- Verify only open/in_progress shown by default","status":"closed","priority":4,"issue_type":"feature","assignee":"beads/polecats/ruby","created_at":"2025-12-29T15:25:11.057467-08:00","created_by":"stevey","updated_at":"2025-12-30T15:59:24.474412-08:00","closed_at":"2025-12-30T15:59:24.474412-08:00","close_reason":"Implemented: BD_AGENT_MODE=1 triggers ultra-compact output format"}
+{"id":"bd-x2ht","title":"Add BD_AGENT_MODE for ultra-compact output","description":"Optional agent-optimized output mode triggered by BD_AGENT_MODE=1 env var:\n\n- Compact format: just ID and title per line\n- Default to open/in_progress only\n- No colors, no emojis\n- Lower default limit (~20)\n- One-line summaries\n\nThis is independent but benefits from TTY detection infrastructure.\n\nConsider auto-detecting agent context via CLAUDE_CODE or similar env vars.","notes":"## Implementation Plan\n\n### Trigger\n```bash\nBD_AGENT_MODE=1 bd list\n```\n\nOr auto-detect common agent environments:\n```go\nfunc IsAgentMode() bool {\n    if os.Getenv(\"BD_AGENT_MODE\") != \"\" {\n        return true\n    }\n    // Auto-detect known agent contexts\n    if os.Getenv(\"CLAUDE_CODE\") != \"\" {\n        return true\n    }\n    // Add other agent env vars as discovered\n    return false\n}\n```\n\n### Code Changes\n\n1. **Add agent output format** (cmd/bd/list.go):\n```go\nif ui.IsAgentMode() {\n    // Ultra-compact: just ID and title\n    for _, issue := range issues {\n        fmt.Printf(\"%s: %s\\n\", issue.ID, issue.Title)\n    }\n    return\n}\n```\n\n2. **Agent mode defaults**:\n```go\nif ui.IsAgentMode() {\n    if limit == 0 {\n        limit = 20 // Lower default for agents\n    }\n    if status == \"\" {\n        // Only actionable work\n        filter.Status = []types.Status{\"open\", \"in_progress\"}\n    }\n}\n```\n\n### Output Format (Agent Mode)\n```\nbd-mypl: Default bd list to non-closed issues\nbd-v5fn: Add default limit to bd list (50 issues)\nbd-jdz3: Add pager support to bd list\n```\n\nNo colors, no emojis, no brackets, no priority display.\nJust ID + title for maximum context efficiency.\n\n### Testing\n- `BD_AGENT_MODE=1 bd list` outputs compact format\n- Verify no ANSI codes in output\n- Verify default limit is 20\n- Verify only open/in_progress shown by default","status":"closed","priority":4,"issue_type":"feature","assignee":"beads/polecats/ruby","created_at":"2025-12-29T15:25:11.057467-08:00","created_by":"stevey","updated_at":"2025-12-30T15:59:55.07758-08:00","closed_at":"2025-12-30T15:59:24.474412-08:00"}
 {"id":"bd-x36g","title":"Thread Test 2","description":"Testing direct mode","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:16.470631-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"}
 {"id":"bd-x3hi","title":"Support redirect files in .beads/ directory","description":"Gas Town creates polecat worktrees with .beads/redirect files that point to a shared beads database. The bd CLI should:\n\n1. When finding a .beads/ directory, check if it contains a 'redirect' file\n2. If redirect exists, read the relative path and use that as the beads directory\n3. This allows multiple git worktrees to share a single beads database\n\nExample:\n- polecats/alpha/.beads/redirect contains '../../mayor/rig/.beads'\n- bd commands from alpha should use mayor/rig/.beads\n\nCurrently bd ignores redirect files and either uses the local .beads/ or walks up to find a parent .beads/.\n\nRelated: gt-nriy (test message that can't be retrieved due to missing redirect support)","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-12-20T21:46:23.415172-08:00","updated_at":"2025-12-20T21:59:25.759664-08:00","closed_at":"2025-12-20T21:59:25.759664-08:00"}
 {"id":"bd-x3j8","title":"Update info.go versionChanges","description":"Add 0.32.1 entry to versionChanges map in cmd/bd/info.go","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:17.344841-08:00","updated_at":"2025-12-20T21:54:31.906761-08:00","closed_at":"2025-12-20T21:54:31.906761-08:00","dependencies":[{"issue_id":"bd-x3j8","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:17.346736-08:00","created_by":"daemon"},{"issue_id":"bd-x3j8","depends_on_id":"bd-rgd7","type":"blocks","created_at":"2025-12-20T21:53:29.62309-08:00","created_by":"daemon"}]}
@@ -808,7 +795,7 @@
 {"id":"bd-xo1o.2","title":"WaitsFor directive: Fanout gate for dynamic children","description":"Implement WaitsFor directive for molecules that spawn dynamic children.\n\n## Syntax\n```markdown\n## Step: aggregate\nCollect outcomes from all dynamically-bonded children.\nWaitsFor: all-children\nNeeds: survey-workers\n```\n\n## Behavior\n1. Parse WaitsFor directive during molecule step parsing\n2. Track which steps spawn dynamic children (the spawner)\n3. Gate step waits until ALL children of the spawner complete\n4. Works with bd ready - gate step not ready until children done\n\n## Gate Types\n- `WaitsFor: all-children` - Wait for all dynamic children\n- `WaitsFor: any-children` - Proceed when first child completes (future)\n- `WaitsFor: \u003cstep-ref\u003e.children` - Wait for specific spawner's children\n\n## Integration\n- bd ready should skip gate steps until children complete\n- bd show \u003cmol\u003e should display gate status and child count","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-23T02:33:14.946475-08:00","updated_at":"2025-12-23T04:00:09.443106-08:00","closed_at":"2025-12-23T04:00:09.443106-08:00","dependencies":[{"issue_id":"bd-xo1o.2","depends_on_id":"bd-xo1o","type":"parent-child","created_at":"2025-12-23T02:33:14.950008-08:00","created_by":"daemon"}]}
 {"id":"bd-xo1o.3","title":"bd activity: Real-time molecule state feed","description":"Implement activity feed command for watching molecule state transitions.\n\n## Commands\n```bash\nbd activity --follow              # Real-time streaming\nbd activity --mol \u003cid\u003e            # Activity for specific molecule\nbd activity --since 5m            # Last 5 minutes\nbd activity --type step           # Only step transitions\n```\n\n## Output Format\n```\n[14:32:01] ✓ patrol-x7k.inbox-check completed\n[14:32:03] ✓ patrol-x7k.check-refinery completed\n[14:32:08] + patrol-x7k.arm-ace bonded (5 steps)\n[14:32:09] → patrol-x7k.arm-ace.capture in_progress\n[14:32:10] ✓ patrol-x7k.arm-ace.capture completed\n[14:32:14] ✓ patrol-x7k.arm-ace.decide completed (action: nudge-1)\n[14:32:17] ✓ patrol-x7k.arm-ace COMPLETE\n[14:32:23] ✓ patrol-x7k SQUASHED → digest-x7k\n```\n\n## Event Types\n- `+` bonded - New molecule/step created\n- `→` in_progress - Step started\n- `✓` completed - Step/molecule finished\n- `✗` failed - Step failed\n- `⊘` burned - Wisp discarded\n- `◉` squashed - Wisp condensed to digest\n\n## Implementation\n- Could use SQLite triggers or polling\n- --follow uses OS file watching or polling\n- Filter by mol ID, type, time range","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-23T02:33:16.298764-08:00","updated_at":"2025-12-23T03:18:33.434079-08:00","closed_at":"2025-12-23T03:18:33.434079-08:00","dependencies":[{"issue_id":"bd-xo1o.3","depends_on_id":"bd-xo1o","type":"parent-child","created_at":"2025-12-23T02:33:16.301522-08:00","created_by":"daemon"}]}
 {"id":"bd-xo1o.4","title":"Parallel step detection in molecules","description":"Detect and flag parallelizable steps in molecules.\n\n## Detection Rules\nSteps can run in parallel when:\n1. No Needs dependencies between them\n2. Not in same sequential chain\n3. Across dynamic arms (arm-ace and arm-nux can parallelize)\n\n## Output in bd mol show\n```\npatrol-x7k (mol-witness-patrol)\n├── inbox-check [completed]\n├── survey-workers [completed]\n│   ├── arm-ace [parallel group A]\n│   │   ├── capture [can parallelize]\n│   │   ├── assess [needs: capture]\n│   │   └── execute [needs: assess]\n│   └── arm-nux [parallel group A]\n│       ├── capture [can parallelize]\n│       └── ...\n├── aggregate [gate: waits for all-children]\n```\n\n## Flags\n- `bd mol show \u003cid\u003e --parallel` - Highlight parallel opportunities\n- `bd ready --mol \u003cid\u003e` - List all steps that can run now\n\n## Future: Parallel Execution Hints\nFor agents using Task tool subagents:\n- Identify independent arms that can run simultaneously\n- Suggest parallelization strategy","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T02:33:17.660368-08:00","updated_at":"2025-12-23T03:56:39.653982-08:00","closed_at":"2025-12-23T03:56:39.653982-08:00","dependencies":[{"issue_id":"bd-xo1o.4","depends_on_id":"bd-xo1o","type":"parent-child","created_at":"2025-12-23T02:33:17.662232-08:00","created_by":"daemon"}]}
-{"id":"bd-xrwy","title":"Auto-detect non-TTY and adjust output","description":"Detect when stdout is not a TTY (piped, redirected, or agent context) and adjust output:\n\n- Disable ANSI colors\n- Disable pager\n- Disable emoji decorations\n- Use plain text format\n\nUses golang.org/x/term or similar for TTY detection.\n\nNeeds pager support to be meaningful (otherwise nothing to disable).","notes":"## Implementation Plan\n\n### Dependencies\n```go\nimport \"golang.org/x/term\"\n// or: github.com/mattn/go-isatty\n```\n\n### Code Changes\n\n1. **Add TTY detection helper** (internal/ui/terminal.go):\n```go\nfunc IsTerminal() bool {\n    return term.IsTerminal(int(os.Stdout.Fd()))\n}\n\nfunc ShouldUseColor() bool {\n    // Respect NO_COLOR standard\n    if os.Getenv(\"NO_COLOR\") \\!= \"\" {\n        return false\n    }\n    // Respect CLICOLOR=0\n    if os.Getenv(\"CLICOLOR\") == \"0\" {\n        return false\n    }\n    // Force color with CLICOLOR_FORCE\n    if os.Getenv(\"CLICOLOR_FORCE\") \\!= \"\" {\n        return true\n    }\n    return IsTerminal()\n}\n```\n\n2. **Apply in lipgloss setup** (internal/ui/styles.go):\n```go\nfunc init() {\n    if \\!ShouldUseColor() {\n        lipgloss.SetColorProfile(termenv.Ascii)\n    }\n}\n```\n\n3. **Disable pager for non-TTY** (uses bd-jdz3 infrastructure):\n```go\n// In pager.go ToPager():\nif \\!IsTerminal() {\n    fmt.Print(content)\n    return nil\n}\n```\n\n### Standards Followed\n- NO_COLOR: https://no-color.org/\n- CLICOLOR/CLICOLOR_FORCE: de facto BSD standard\n- gh cli uses same conventions\n\n### Testing\n- `bd list | cat` outputs no ANSI codes\n- `NO_COLOR=1 bd list` outputs no colors\n- `CLICOLOR_FORCE=1 bd list | cat` keeps colors\n- Verify emoji handling in non-TTY mode","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-29T15:25:10.112313-08:00","created_by":"stevey","updated_at":"2025-12-30T15:44:43.345108-08:00","closed_at":"2025-12-30T06:59:10.805958-08:00","close_reason":"Implemented TTY detection with NO_COLOR/CLICOLOR support","dependencies":[{"issue_id":"bd-xrwy","depends_on_id":"bd-jdz3","type":"blocks","created_at":"2025-12-29T15:25:22.084746-08:00","created_by":"daemon"}]}
+{"id":"bd-xrwy","title":"Auto-detect non-TTY and adjust output","description":"Detect when stdout is not a TTY (piped, redirected, or agent context) and adjust output:\n\n- Disable ANSI colors\n- Disable pager\n- Disable emoji decorations\n- Use plain text format\n\nUses golang.org/x/term or similar for TTY detection.\n\nNeeds pager support to be meaningful (otherwise nothing to disable).","notes":"## Implementation Plan\n\n### Dependencies\n```go\nimport \"golang.org/x/term\"\n// or: github.com/mattn/go-isatty\n```\n\n### Code Changes\n\n1. **Add TTY detection helper** (internal/ui/terminal.go):\n```go\nfunc IsTerminal() bool {\n    return term.IsTerminal(int(os.Stdout.Fd()))\n}\n\nfunc ShouldUseColor() bool {\n    // Respect NO_COLOR standard\n    if os.Getenv(\"NO_COLOR\") \\!= \"\" {\n        return false\n    }\n    // Respect CLICOLOR=0\n    if os.Getenv(\"CLICOLOR\") == \"0\" {\n        return false\n    }\n    // Force color with CLICOLOR_FORCE\n    if os.Getenv(\"CLICOLOR_FORCE\") \\!= \"\" {\n        return true\n    }\n    return IsTerminal()\n}\n```\n\n2. **Apply in lipgloss setup** (internal/ui/styles.go):\n```go\nfunc init() {\n    if \\!ShouldUseColor() {\n        lipgloss.SetColorProfile(termenv.Ascii)\n    }\n}\n```\n\n3. **Disable pager for non-TTY** (uses bd-jdz3 infrastructure):\n```go\n// In pager.go ToPager():\nif \\!IsTerminal() {\n    fmt.Print(content)\n    return nil\n}\n```\n\n### Standards Followed\n- NO_COLOR: https://no-color.org/\n- CLICOLOR/CLICOLOR_FORCE: de facto BSD standard\n- gh cli uses same conventions\n\n### Testing\n- `bd list | cat` outputs no ANSI codes\n- `NO_COLOR=1 bd list` outputs no colors\n- `CLICOLOR_FORCE=1 bd list | cat` keeps colors\n- Verify emoji handling in non-TTY mode","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-29T15:25:10.112313-08:00","created_by":"stevey","updated_at":"2025-12-30T15:55:53.202981-08:00","closed_at":"2025-12-30T06:59:10.805958-08:00","dependencies":[{"issue_id":"bd-xrwy","depends_on_id":"bd-jdz3","type":"blocks","created_at":"2025-12-29T15:25:22.084746-08:00","created_by":"daemon"}]}
 {"id":"bd-xsl9","title":"Remove legacy autoflush code paths","description":"## Problem\n\nThe autoflush system has dual code paths - an old timer-based approach and a new FlushManager. Both are actively used based on whether flushManager is nil.\n\n## Locations\n\n- main.go:78-81: isDirty, needsFullExport, flushTimer marked 'used by legacy code'\n- autoflush.go:291-369: Functions with 'Legacy path for backward compatibility with tests'\n\n## Current Behavior\n\n```go\n// In markDirtyAndScheduleFlush():\nif flushManager != nil {\n    flushManager.MarkDirty(false)\n    return\n}\n// Legacy path for backward compatibility with tests\n```\n\n## Proposed Fix\n\n1. Ensure flushManager is always initialized (even in tests)\n2. Remove the legacy timer-based code paths\n3. Remove isDirty, needsFullExport, flushTimer globals\n4. Update tests to use FlushManager\n\n## Risk\n\nLow - the FlushManager is the production path. Legacy code only runs when flushManager is nil (test scenarios).","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-21T15:49:30.83769-08:00","updated_at":"2025-12-23T01:54:59.09333-08:00","closed_at":"2025-12-23T01:54:59.09333-08:00"}
 {"id":"bd-xtf5","title":"Code smell: Multiple CLI command files exceed 1000 lines","description":"Several CLI command files are very large and could benefit from splitting:\n\n| File | Lines | Notes |\n|------|-------|-------|\n| init.go | 1928 | Multiple init modes, contributor/team setup |\n| show.go | 1592 | Display formatting, tree views, output modes |\n| doctor.go | 1295 | Many health checks |\n| sync.go | 1201 | Sync branch operations |\n| compact.go | 1199 | Compaction logic |\n| linear.go | 1190 | Linear integration |\n| main.go | 1148 | Entry point and globals |\n\nConsider:\n1. Splitting init.go into init_core.go, init_contributor.go (already exists), init_team.go (already exists)\n2. Moving show.go formatters to internal/ui package\n3. Doctor checks could be individual files under doctor/ subpackage (already started)\n\nLocation: cmd/bd/*.go","status":"closed","priority":4,"issue_type":"chore","created_at":"2025-12-28T15:32:23.233091-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-28T18:05:09.921186-08:00","closed_at":"2025-12-28T18:05:09.921186-08:00","dependencies":[{"issue_id":"bd-xtf5","depends_on_id":"bd-784c","type":"parent-child","created_at":"2025-12-28T15:38:04.278433-08:00","created_by":"daemon"}],"comments":[{"id":7,"issue_id":"bd-xtf5","author":"stevey","text":"Completed init.go refactoring:\n\n- Split from 1928 → 705 lines (under 800 target)\n- Extracted 4 new files:\n  - init_git_hooks.go (~480 lines): Git hooks and merge driver\n  - init_stealth.go (~310 lines): Stealth mode, fork detection\n  - init_agent.go (~170 lines): AGENTS.md and Claude settings\n  - init_templates.go (~180 lines): config.yaml and README templates\n\nRemaining files still over 800 lines:\n- show.go (1592)\n- doctor.go (1295)\n- sync.go (1201)\n- compact.go (1199)\n- linear.go (1190)\n- main.go (1148)\n- list.go (1052)\n- template.go (1051)\n- gate.go (1048)\n\nCommit: c5f03b7b","created_at":"2025-12-29T01:27:43Z"}]}
 {"id":"bd-xtl9","title":"Test Second Parent","status":"tombstone","priority":2,"issue_type":"epic","created_at":"2025-12-27T22:16:14.971605-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-27T22:16:35.925357-08:00","deleted_at":"2025-12-27T22:16:35.925357-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"epic"}
@@ -826,7 +813,7 @@
 {"id":"bd-ykqu","title":"Add gate timeout tracking and notification","description":"Implement timeout and notification logic for gates.\n\n## Timeout Behavior\n1. Gate created with timeout (e.g., 30m)\n2. Deacon tracks elapsed time during patrol\n3. If timeout reached:\n   - Notify all waiters: \"Gate timed out\"\n   - Close gate with timeout reason\n   - Waiter can retry, escalate, or fail gracefully\n\n## Notification\n- Use gt mail send to notify waiters\n- Include gate ID, await type, and reason in message\n- Support multiple waiters notification\n\n## Escalation Path\n- Witness sees stuck worker, nudges them\n- Worker can escalate to human if needed","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T11:44:40.1825-08:00","updated_at":"2025-12-23T12:19:44.362527-08:00","closed_at":"2025-12-23T12:19:44.362527-08:00","dependencies":[{"issue_id":"bd-ykqu","depends_on_id":"bd-udsi","type":"parent-child","created_at":"2025-12-23T11:44:53.072862-08:00","created_by":"daemon"},{"issue_id":"bd-ykqu","depends_on_id":"bd-is6m","type":"blocks","created_at":"2025-12-23T11:44:56.595085-08:00","created_by":"daemon"}]}
 {"id":"bd-ymqn","title":"Code review: bd mol bond --ref and bd activity (bd-xo1o work)","description":"Review dave's recent commits for bd-xo1o (Dynamic Molecule Bonding):\n\n## Commits to Review\n- ee04b1ea: feat: add dynamic molecule bonding with --ref flag (bd-xo1o.1)\n- be520d90: feat: add bd activity command for real-time state feed (bd-xo1o.3)\n\n## Review Focus\n1. Code quality and correctness\n2. Error handling\n3. Edge cases\n4. Test coverage\n5. Documentation\n\n## Deliverables\n- File beads for any issues found\n- Note any concerns or suggestions\n- Verify the implementation matches the bd-xo1o epic requirements","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-23T03:47:55.217363-08:00","updated_at":"2025-12-23T04:11:00.226326-08:00","closed_at":"2025-12-23T04:11:00.226326-08:00"}
 {"id":"bd-yqhh","title":"bd list --parent: filter by parent issue","description":"Add --parent flag to bd list to filter issues by parent.\n\nExample:\n```bash\nbd list --parent=gt-h5n --status=open\n```\n\nWould show all open children of gt-h5n.\n\nUseful for:\n- Checking epic progress\n- Finding swarmable work within an epic\n- Molecule step listing","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-23T01:51:26.830952-08:00","updated_at":"2025-12-23T02:10:12.909803-08:00","closed_at":"2025-12-23T02:10:12.909803-08:00"}
-{"id":"bd-yuxq","title":"Code smell: 262 uses of interface{} reduce type safety","description":"Heavy use of interface{} across 92 files (262 occurrences) in:\n- RPC update arguments: updatesFromArgs() returns map[string]interface{}\n- JSON unmarshaling and formatting\n- Storage query helpers\n\n**Example in internal/rpc/server_issues_epics.go:45:**\n```go\nfunc updatesFromArgs(a UpdateArgs) map[string]interface{} {\n    // Returns map with interface{} values - types must be asserted at use sites\n}\n```\n\n**Problem:**\n- Loss of type safety\n- Runtime type assertions required\n- Harder to catch errors at compile time\n\n**Acceptance Criteria:**\n- [ ] Define typed update structs for specific field groups\n- [ ] Use generics where possible (Go 1.18+)\n- [ ] Reduce interface{} count by at least 50%\n- [ ] Document expected types where interface{} remains necessary\n- [ ] Tests pass","status":"closed","priority":3,"issue_type":"chore","created_at":"2025-12-28T19:00:01.896147-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-30T15:44:43.347739-08:00","closed_at":"2025-12-30T07:04:41.376731-08:00","close_reason":"Implemented type safety improvements:\n\n1. Created IssueUpdate struct with typed fields and ToMap() for backward compatibility\n2. Created 15+ typed response structs (StatusMessage, DeleteResult, CompactResult, etc.)\n3. Refactored updatesFromArgs to use typed IssueUpdate internally\n4. Updated RPC delete handler to use typed DeleteResult\n5. Updated migrate.go to use StatusMessage for errors\n\nThe typed structs provide compile-time checking and reduce runtime type assertions. This foundation enables further cleanup of interface{} usage over time.\n\nNote: Many remaining interface{} usages are inherent to Go's JSON handling and external APIs (GraphQL, SQL). The acceptance criteria of 50% reduction applies to the refactorable patterns, not the total count.","dependencies":[{"issue_id":"bd-yuxq","depends_on_id":"bd-ox1o","type":"blocks","created_at":"2025-12-28T19:00:23.812412-08:00","created_by":"daemon"}]}
+{"id":"bd-yuxq","title":"Code smell: 262 uses of interface{} reduce type safety","description":"Heavy use of interface{} across 92 files (262 occurrences) in:\n- RPC update arguments: updatesFromArgs() returns map[string]interface{}\n- JSON unmarshaling and formatting\n- Storage query helpers\n\n**Example in internal/rpc/server_issues_epics.go:45:**\n```go\nfunc updatesFromArgs(a UpdateArgs) map[string]interface{} {\n    // Returns map with interface{} values - types must be asserted at use sites\n}\n```\n\n**Problem:**\n- Loss of type safety\n- Runtime type assertions required\n- Harder to catch errors at compile time\n\n**Acceptance Criteria:**\n- [ ] Define typed update structs for specific field groups\n- [ ] Use generics where possible (Go 1.18+)\n- [ ] Reduce interface{} count by at least 50%\n- [ ] Document expected types where interface{} remains necessary\n- [ ] Tests pass","status":"closed","priority":3,"issue_type":"chore","created_at":"2025-12-28T19:00:01.896147-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-30T15:55:53.203941-08:00","closed_at":"2025-12-30T07:04:41.376731-08:00","dependencies":[{"issue_id":"bd-yuxq","depends_on_id":"bd-ox1o","type":"blocks","created_at":"2025-12-28T19:00:23.812412-08:00","created_by":"daemon"}]}
 {"id":"bd-yx22","title":"Merge: bd-d28c","description":"branch: polecat/testcat\ntarget: main\nsource_issue: bd-d28c\nrig: beads","status":"closed","priority":1,"issue_type":"merge-request","created_at":"2025-12-23T21:33:15.490412-08:00","updated_at":"2025-12-23T21:36:38.584933-08:00","closed_at":"2025-12-23T21:36:38.584933-08:00"}
 {"id":"bd-yy1h","title":"Witness Patrol","description":"Per-rig worker monitor patrol loop with progressive nudging.","status":"tombstone","priority":2,"issue_type":"molecule","created_at":"2025-12-26T13:08:21.271692-08:00","updated_at":"2025-12-27T00:10:54.178645-08:00","deleted_at":"2025-12-27T00:10:54.178645-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"molecule"}
 {"id":"bd-z3rf","title":"dave Handoff","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-23T04:33:42.874554-08:00","updated_at":"2025-12-29T12:41:09.335754-08:00","deleted_at":"2025-12-29T12:41:09.335754-08:00","deleted_by":"daemon","delete_reason":"orphaned handoff stubs from crash","original_type":"task"}
diff --git a/cmd/bd/create.go b/cmd/bd/create.go
index 1031f322..7fad820f 100644
--- a/cmd/bd/create.go
+++ b/cmd/bd/create.go
@@ -130,6 +130,17 @@ var createCmd = &cobra.Command{
 			FatalError("--role-type and --agent-rig flags require --type=agent")
 		}
 
+		// Event-specific flags
+		eventCategory, _ := cmd.Flags().GetString("event-category")
+		eventActor, _ := cmd.Flags().GetString("event-actor")
+		eventTarget, _ := cmd.Flags().GetString("event-target")
+		eventPayload, _ := cmd.Flags().GetString("event-payload")
+
+		// Validate event-specific flags require --type=event
+		if (eventCategory != "" || eventActor != "" || eventTarget != "" || eventPayload != "") && issueType != "event" {
+			FatalError("--event-category, --event-actor, --event-target, and --event-payload flags require --type=event")
+		}
+
 		// Handle --rig or --prefix flag: create issue in a different rig
 		// Both flags use the same forgiving lookup (accepts rig names or prefixes)
 		targetRig := rigOverride
@@ -273,6 +284,10 @@ var createCmd = &cobra.Command{
 				MolType:            string(molType),
 				RoleType:           roleType,
 				Rig:                agentRig,
+				EventCategory:      eventCategory,
+				EventActor:         eventActor,
+				EventTarget:        eventTarget,
+				EventPayload:       eventPayload,
 			}
 
 			resp, err := daemonClient.Create(createArgs)
@@ -322,6 +337,10 @@ var createCmd = &cobra.Command{
 			MolType:            molType,
 			RoleType:           roleType,
 			Rig:                agentRig,
+			EventKind:          eventCategory,
+			Actor:              eventActor,
+			Target:             eventTarget,
+			Payload:            eventPayload,
 		}
 
 		ctx := rootCtx
@@ -503,7 +522,7 @@ func init() {
 	createCmd.Flags().String("title", "", "Issue title (alternative to positional argument)")
 	createCmd.Flags().Bool("silent", false, "Output only the issue ID (for scripting)")
 	registerPriorityFlag(createCmd, "2")
-	createCmd.Flags().StringP("type", "t", "task", "Issue type (bug|feature|task|epic|chore|merge-request|molecule|gate|agent|role|convoy)")
+	createCmd.Flags().StringP("type", "t", "task", "Issue type (bug|feature|task|epic|chore|merge-request|molecule|gate|agent|role|convoy|event)")
 	registerCommonIssueFlags(createCmd)
 	createCmd.Flags().StringSliceP("labels", "l", []string{}, "Labels (comma-separated)")
 	createCmd.Flags().StringSlice("label", []string{}, "Alias for --labels")
@@ -523,6 +542,11 @@ func init() {
 	// Agent-specific flags (only valid when --type=agent)
 	createCmd.Flags().String("role-type", "", "Agent role type: polecat|crew|witness|refinery|mayor|deacon (requires --type=agent)")
 	createCmd.Flags().String("agent-rig", "", "Agent's rig name (requires --type=agent)")
+	// Event-specific flags (only valid when --type=event)
+	createCmd.Flags().String("event-category", "", "Event category (e.g., patrol.muted, agent.started) (requires --type=event)")
+	createCmd.Flags().String("event-actor", "", "Entity URI who caused this event (requires --type=event)")
+	createCmd.Flags().String("event-target", "", "Entity URI or bead ID affected (requires --type=event)")
+	createCmd.Flags().String("event-payload", "", "Event-specific JSON data (requires --type=event)")
 	// Note: --json flag is defined as a persistent flag in main.go, not here
 	rootCmd.AddCommand(createCmd)
 }
diff --git a/internal/rpc/protocol.go b/internal/rpc/protocol.go
index a840bf07..224738af 100644
--- a/internal/rpc/protocol.go
+++ b/internal/rpc/protocol.go
@@ -102,6 +102,11 @@ type CreateArgs struct {
 	// Agent identity fields (only valid when IssueType == "agent")
 	RoleType string `json:"role_type,omitempty"` // polecat|crew|witness|refinery|mayor|deacon
 	Rig      string `json:"rig,omitempty"`       // Rig name (empty for town-level agents)
+	// Event fields (only valid when IssueType == "event")
+	EventCategory string `json:"event_category,omitempty"` // Namespaced category (e.g., patrol.muted, agent.started)
+	EventActor    string `json:"event_actor,omitempty"`    // Entity URI who caused this event
+	EventTarget   string `json:"event_target,omitempty"`   // Entity URI or bead ID affected
+	EventPayload  string `json:"event_payload,omitempty"`  // Event-specific JSON data
 }
 
 // UpdateArgs represents arguments for the update operation
@@ -142,6 +147,11 @@ type UpdateArgs struct {
 	// Agent identity fields
 	RoleType *string `json:"role_type,omitempty"` // polecat|crew|witness|refinery|mayor|deacon
 	Rig      *string `json:"rig,omitempty"`       // Rig name (empty for town-level agents)
+	// Event fields (only valid when IssueType == "event")
+	EventCategory *string `json:"event_category,omitempty"` // Namespaced category (e.g., patrol.muted, agent.started)
+	EventActor    *string `json:"event_actor,omitempty"`    // Entity URI who caused this event
+	EventTarget   *string `json:"event_target,omitempty"`   // Entity URI or bead ID affected
+	EventPayload  *string `json:"event_payload,omitempty"`  // Event-specific JSON data
 }
 
 // CloseArgs represents arguments for the close operation
diff --git a/internal/rpc/server_issues_epics.go b/internal/rpc/server_issues_epics.go
index 5d0ac7f4..8dbc3cf5 100644
--- a/internal/rpc/server_issues_epics.go
+++ b/internal/rpc/server_issues_epics.go
@@ -122,6 +122,19 @@ func updatesFromArgs(a UpdateArgs) map[string]interface{} {
 	if a.Rig != nil {
 		u["rig"] = *a.Rig
 	}
+	// Event fields
+	if a.EventCategory != nil {
+		u["event_category"] = *a.EventCategory
+	}
+	if a.EventActor != nil {
+		u["event_actor"] = *a.EventActor
+	}
+	if a.EventTarget != nil {
+		u["event_target"] = *a.EventTarget
+	}
+	if a.EventPayload != nil {
+		u["event_payload"] = *a.EventPayload
+	}
 	return u
 }
 
@@ -208,6 +221,11 @@ func (s *Server) handleCreate(req *Request) Response {
 		// Agent identity fields
 		RoleType: createArgs.RoleType,
 		Rig:      createArgs.Rig,
+		// Event fields (map protocol names to internal names)
+		EventKind: createArgs.EventCategory,
+		Actor:     createArgs.EventActor,
+		Target:    createArgs.EventTarget,
+		Payload:   createArgs.EventPayload,
 	}
 	
 	// Check if any dependencies are discovered-from type
diff --git a/internal/storage/sqlite/queries.go b/internal/storage/sqlite/queries.go
index 02bdc0ab..1b8102a8 100644
--- a/internal/storage/sqlite/queries.go
+++ b/internal/storage/sqlite/queries.go
@@ -680,6 +680,11 @@ var allowedUpdateFields = map[string]bool{
 	"rig":           true,
 	// Molecule type field
 	"mol_type": true,
+	// Event fields
+	"event_category": true,
+	"event_actor":    true,
+	"event_target":   true,
+	"event_payload":  true,
 }
 
 // validatePriority validates a priority value