From 50cb2739c86dcb4f2a301f723c0054e20d0f4ef0 Mon Sep 17 00:00:00 2001
From: Steve Yegge <stevey@sourcegraph.com>
Date: Sun, 2 Nov 2025 17:17:11 -0800
Subject: [PATCH] Import beads JSONL updates

---
 .beads/beads.jsonl | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.beads/beads.jsonl b/.beads/beads.jsonl
index 06e914ff..b5af71f2 100644
--- a/.beads/beads.jsonl
+++ b/.beads/beads.jsonl
@@ -13,7 +13,7 @@
 {"id":"bd-0d9c","content_hash":"a61ba371d6c50f21a92e4debeaaa00a4c3eb77ef96fbcdfa89f80e9b13ffff7a","title":"YABB: Spurious issue updates during normal operations","description":"Issue bd-627d was updated during config refactoring session without any actual changes to it. Only timestamps and content_hash changed.\n\nObserved: Running various bd commands (list, create, etc.) caused bd-627d updated_at to change from 14:14 to 14:31.\n\nExpected: Issues should only be updated when explicitly modified.\n\nThis causes:\n- Dirty JSONL after every session\n- False conflicts in git\n- Confusing git history\n\nLikely culprit: Daemon auto-import/export cycle or database migration touching all issues.","notes":"Investigated thoroughly - unable to reproduce. The import logic has IssueDataChanged() checks before calling UpdateIssue (importer/importer.go:458). All tests pass. May have been fixed by recent refactorings. Closing as cannot reproduce - please reopen with specific repro steps if it occurs again.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-02T14:36:31.023552-08:00","updated_at":"2025-11-02T16:27:39.023535-08:00","closed_at":"2025-11-02T16:27:39.023539-08:00"}
 {"id":"bd-0dcea000","content_hash":"a6fc218b07d270e3498957525c39a869f7c850d687339b6d758a246be20c9591","title":"Add tests for internal/importer package","description":"Currently 0.0% coverage. Need tests for JSONL import logic including collision detection and resolution.","status":"open","priority":2,"issue_type":"task","created_at":"2025-10-29T14:06:21.071024-07:00","updated_at":"2025-10-30T17:12:58.183211-07:00","dependencies":[{"issue_id":"bd-0dcea000","depends_on_id":"bd-cbed9619.5","type":"blocks","created_at":"2025-10-29T19:52:05.531279-07:00","created_by":"import-remap"},{"issue_id":"bd-0dcea000","depends_on_id":"bd-cbed9619.4","type":"blocks","created_at":"2025-10-29T19:52:05.53166-07:00","created_by":"import-remap"}]}
 {"id":"bd-0e1f2b1b","content_hash":"c0b1677fe3f4aa3f395ae4d79bff5362632d5db26477bf571c09f9177b8741ef","title":"Event-driven daemon architecture","description":"Replace 5-second polling sync loop with event-driven architecture that reacts instantly to changes. Eliminates stale data issues while reducing CPU ~60%. Key components: FileWatcher (fsnotify), Debouncer (500ms), RPC mutation events, optional git hooks. Target latency: \u003c500ms (vs 5000ms). See event_driven_daemon.md for full design.","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-10-28T16:20:02.430479-07:00","updated_at":"2025-10-30T17:12:58.221424-07:00","closed_at":"2025-10-28T16:30:26.631191-07:00"}
-{"id":"bd-0e74","content_hash":"b0f407df62d992c094ba763db11c4fd5be6386b34f3b7cf94665f2e37dbc0999","title":"Comprehensive testing for separate branch workflow","description":"Comprehensive testing for separate branch workflow including unit tests, integration tests, and performance testing.\n\nTasks:\n- Unit tests for worktree management\n- Unit tests for config parsing\n- Integration tests: create/update/close → beads branch\n- Integration test: merge beads → main\n- Integration test: protected branch scenario\n- Integration test: network failure recovery\n- Integration test: config change handling\n- Manual testing guide\n- Performance testing (worktree overhead)\n\nTest scenarios: fresh setup, issue operations, merge workflow, protected branch, error handling, migration, multiple workspaces, sparse checkout\n\nEstimated effort: 4-5 days","acceptance_criteria":"- All unit tests pass\n- All integration tests pass\n- Manual testing guide works\n- No data loss in any scenario\n- Performance acceptable (\u003c 100ms overhead per commit)","status":"in_progress","priority":1,"issue_type":"task","created_at":"2025-11-02T15:22:35.580741-08:00","updated_at":"2025-11-02T15:35:17.004299-08:00","dependencies":[{"issue_id":"bd-0e74","depends_on_id":"bd-a101","type":"parent-child","created_at":"2025-11-02T15:22:51.348226-08:00","created_by":"stevey"}]}
+{"id":"bd-0e74","content_hash":"8a8661c26a526f67df2a64f2da6a18e7db3be52fc8c2971dd7fd90bdb1b7dd91","title":"Comprehensive testing for separate branch workflow","description":"Comprehensive testing for separate branch workflow including unit tests, integration tests, and performance testing.\n\nTasks:\n- Unit tests for worktree management\n- Unit tests for config parsing\n- Integration tests: create/update/close → beads branch\n- Integration test: merge beads → main\n- Integration test: protected branch scenario\n- Integration test: network failure recovery\n- Integration test: config change handling\n- Manual testing guide\n- Performance testing (worktree overhead)\n\nTest scenarios: fresh setup, issue operations, merge workflow, protected branch, error handling, migration, multiple workspaces, sparse checkout\n\nEstimated effort: 4-5 days","acceptance_criteria":"- All unit tests pass\n- All integration tests pass\n- Manual testing guide works\n- No data loss in any scenario\n- Performance acceptable (\u003c 100ms overhead per commit)","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-02T15:22:35.580741-08:00","updated_at":"2025-11-02T17:12:34.619508-08:00","dependencies":[{"issue_id":"bd-0e74","depends_on_id":"bd-a101","type":"parent-child","created_at":"2025-11-02T15:22:51.348226-08:00","created_by":"stevey"}]}
 {"id":"bd-1022","content_hash":"0b712a337844711597d2dd950d27d4c032a3b746a27f44326d62db740f5944e9","title":"Use external_ref as primary matching key for import updates","description":"Enable re-syncing from external systems (Jira, GitHub, Linear) by using external_ref as the primary matching key during imports. Currently imports treat any content change as a collision, making it impossible to sync updates from external systems without creating duplicates.\n\nSee GH #142 for detailed proposal and implementation plan.\n\nKey changes needed:\n1. Add findByExternalRef() query function\n2. Update DetectCollisions() to match by external_ref first\n3. Update import_shared.go to update existing issues when external_ref matches\n4. Add index on external_ref for performance\n5. Preserve local issues (no external_ref) from being overwritten\n\nThis enables hybrid workflows: import external backlog, break down with local tasks, re-sync anytime.","notes":"## Code Review Complete ✅\n\n**Overall Assessment**: EXCELLENT - Production ready\n\n### Implementation Quality\n- ✓ Clean architecture with proper interface extension\n- ✓ Dual backend support (SQLite + Memory)\n- ✓ Smart matching priority: external_ref → ID → content hash\n- ✓ O(1) lookups with database index\n- ✓ Timestamp-based conflict resolution\n- ✓ Comprehensive test coverage (11 test cases)\n\n### Follow-up Issues Filed\nHigh Priority (P2):\n- bd-897a: Add UNIQUE constraint on external_ref column\n- bd-7315: Add validation for duplicate external_ref in batch imports\n\nMedium Priority (P3):\n- bd-f9a1: Add index usage verification test\n- bd-3f6a: Add concurrent import race condition tests\n\nLow Priority (P4):\n- bd-e166: Improve timestamp comparison readability\n- bd-9e23: Optimize Memory backend with index\n- bd-537e: Add external_ref change tracking\n- bd-df11: Add import metrics\n- bd-9f4a: Document external_ref in content hash\n\n### Key Features\n✅ External systems (Jira, GitHub, Linear) can re-sync without duplicates\n✅ Hybrid workflows: import external backlog, add local tasks, re-sync anytime\n✅ Local issues protected from being overwritten\n✅ Timestamp checking ensures only newer updates applied\n✅ Performance optimized with database index\n\n**Confidence Level**: 95% - Ship it! 🚀","status":"closed","priority":0,"issue_type":"feature","created_at":"2025-11-02T14:55:56.355813-08:00","updated_at":"2025-11-02T15:34:56.634126-08:00","closed_at":"2025-11-02T15:27:44.810375-08:00"}
 {"id":"bd-11e0","content_hash":"591db3f5674cf7f79b1f50d6b8d83fe60e495f02a21e181c9c63d8da88308d58","title":"Database import silently fails when daemon version != CLI version","description":"","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-10-31T21:08:09.096749-07:00","updated_at":"2025-11-01T19:29:35.267817-07:00","closed_at":"2025-11-01T19:29:35.267817-07:00"}
 {"id":"bd-1231","content_hash":"94139e31b3a3e58086ea77a916173a6f0c372a66a21925af0b9385de2f387c2f","title":"CI failing on all 3/4 test jobs despite individual tests passing","description":"CI has been broken for a day+ with mysterious test failures. Issue #173 on GitHub tracks this.\n\n## Current Status\n- **Lint job**: ✅ PASSING\n- **Test (Linux)**: ❌ FAILING (exit code 1)\n- **Test (Windows)**: ❌ FAILING (exit code 1)\n- **Test Nix Flake**: ❌ FAILING (exit code 1)\n\n## Key Observations\nAll three failing jobs show identical pattern:\n- Individual test output shows PASS for every test\n- Final result: `FAIL github.com/steveyegge/beads/cmd/bd`\n- Exit code 1 despite no visible test failures\n- Last visible test output before failure: \"No Reason Issue\" test (TestCloseCommand/close_without_reason)\n\n## Investigation So Far\n1. All tests appear to pass when examined individually\n2. Likely causes:\n   - Race detector finding data races during test cleanup (`-race` flag)\n   - Panic/error occurring after main tests complete\n   - Test harness issue not reporting actual failure\n   - Possible regression from PR #203 (dependency_type changes)\n\n## Recent CI Runs\n- Run 19015040655 (latest): 3/4 failing\n- Multiple recent commits tried to fix Windows/lint issues\n- Agent on rrnewton/beads fork attempting fixes (2/4 passing there)\n\n## Next Steps\n1. Run tests locally with `-race -v` to see full output\n2. Check for unreported test failures or panics\n3. Examine test cleanup/teardown code\n4. Review recent changes around close command tests\n5. Consider if race detector is too sensitive or catching real issues","notes":"## Progress Update\n\n### ✅ Fixed (commits 09bd4d3, 21a29bc)\n1. **Daemon auto-import** - Always recompute content_hash in importer to avoid stale hashes\n2. **TestScripts failures** - Added bd binary to PATH for shell subprocess tests\n3. **Test infrastructure** - Added .gitignore to test repos, fixed last_import_time metadata\n\n### ✅ CI Status (Run 19015638968)\n- **Test (Linux)**: ✅ SUCCESS - All tests passing\n- **Test (Windows)**: ❌ FAILURE - Pre-existing Windows test failures\n- **Test Nix Flake**: ❌ FAILURE - Build fails with same test errors\n- **Lint**: ❌ FAILURE - Pre-existing issue in migrate.go:647\n\n### ❌ Remaining Issues (not related to original bd-1231)\n\n**Windows failures:**\n- TestFindDatabasePathEnvVar\n- TestHashIDs_MultiCloneConverge  \n- TestHashIDs_IdenticalContentDedup\n- TestDatabaseReinitialization (5 subtests)\n- TestFindBeadsDir_NotFound\n- TestMetricsSnapshot/uptime\n\n**Lint failure:**\n- cmd/bd/migrate.go:647:37: cleanupWALFiles - result 0 (error) is always nil (unparam)\n\n**Nix failure:**\n- Build fails during test phase with same test errors\n\n### Next Steps\n1. Investigate Windows-specific test failures\n2. Fix linting issue in migrate.go\n3. Debug Nix build test failures","status":"closed","priority":0,"issue_type":"bug","created_at":"2025-11-02T08:42:16.142128-08:00","updated_at":"2025-11-02T12:32:00.15834-08:00","closed_at":"2025-11-02T12:32:00.158346-08:00","external_ref":"https://github.com/steveyegge/beads/issues/173"}
@@ -48,7 +48,7 @@
 {"id":"bd-317ddbbf","content_hash":"81a74ccf29037e5a780b12540a4059bab98b9a790a5a043a68118fc00a083cda","title":"Add BEADS_DAEMON_MODE flag handling","description":"Add environment variable BEADS_DAEMON_MODE (values: poll, events). Default to 'poll' for Phase 1. Wire into daemon startup to select runEventLoop vs runEventDrivenLoop.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-10-28T16:20:02.433638-07:00","updated_at":"2025-10-30T17:12:58.224373-07:00","closed_at":"2025-10-28T12:31:47.819136-07:00"}
 {"id":"bd-31aab707","content_hash":"8f64a8dbcc5ed63bc73b7d91fca624527033265dc1c89a7775eb2f45b378f382","title":"Unit tests for FileWatcher","description":"Test watcher detects JSONL changes. Test git ref changes trigger import. Test debounce integration. Test watcher recovery from file removal/rename.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-10-29T11:30:59.842317-07:00","updated_at":"2025-10-31T12:00:43.189591-07:00","closed_at":"2025-10-31T12:00:43.189591-07:00"}
 {"id":"bd-325da116","content_hash":"d7c5637527778c5c835f5e4b6e15fbd51a3476d6749ab3155b8aeac08a8ef339","title":"Fix N-way collision convergence","description":"Epic to fix the N-way collision convergence problem documented in n-way-collision-convergence.md.\n\n## Problem Summary\nThe current collision resolution implementation works correctly for 2-way collisions but does not converge for 3-way (and by extension N-way) collisions. TestThreeCloneCollision demonstrates this with reproducible failures.\n\n## Root Causes Identified\n1. Pairwise resolution doesn't scale - each clone makes local decisions without global context\n2. DetectCollisions modifies state during detection (line 83-86 in collision.go)\n3. No remapping history - can't track transitive remap chains (test-1 → test-2 → test-3)\n4. Import-time resolution is too late - happens after git merge\n\n## Solution Architecture\nReplace pairwise resolution with deterministic global N-way resolution using:\n- Content-addressable identity (content hashing)\n- Global collision resolution (sort all versions by hash)\n- Read-only detection phase (separate from modification)\n- Idempotent imports (content-first matching)\n\n## Success Criteria\n- TestThreeCloneCollision passes without skipping\n- All clones converge to identical content after final pull\n- No data loss (all issues present in all clones)\n- Works for N workers (test with 5+ clones)\n- Idempotent imports (importing same JSONL multiple times is safe)\n\n## Implementation Phases\nSee child issues for detailed breakdown of each phase.","status":"closed","priority":0,"issue_type":"epic","created_at":"2025-10-29T23:05:13.889079-07:00","updated_at":"2025-10-31T11:59:41.031668-07:00","closed_at":"2025-10-31T11:59:41.031668-07:00"}
-{"id":"bd-3396","content_hash":"66907b79181fce3d1b04dad20c240f37f3347be91f68e7d3fce8dabed1a9d81b","title":"Add merge helper commands (bd sync --merge)","description":"Add commands to merge beads branch back to main.\n\nTasks:\n- Implement bd sync --merge command\n- Implement bd sync --status command\n- Implement bd sync --auto-merge (optional, for automation)\n- Detect merge conflicts and provide guidance\n- Show commit diff between branches\n- Verify main branch is clean before merge\n- Push merged changes to remote\n\nEstimated effort: 2-3 days","acceptance_criteria":"- bd sync --merge successfully merges beads branch\n- Conflicts detected with helpful error message\n- bd sync --status shows clear diff\n- Works with protected main (user must have push access)\n- Git history is clean (no unnecessary merge commits)","status":"in_progress","priority":1,"issue_type":"task","created_at":"2025-11-02T15:22:35.580873-08:00","updated_at":"2025-11-02T15:35:17.004654-08:00","dependencies":[{"issue_id":"bd-3396","depends_on_id":"bd-a101","type":"parent-child","created_at":"2025-11-02T15:22:48.376916-08:00","created_by":"stevey"}]}
+{"id":"bd-3396","content_hash":"43addfac9a43239dd75e1292a6502a79479cb09e67ff5d6823cc3df1b73390bf","title":"Add merge helper commands (bd sync --merge)","description":"Add commands to merge beads branch back to main.\n\nTasks:\n- Implement bd sync --merge command\n- Implement bd sync --status command\n- Implement bd sync --auto-merge (optional, for automation)\n- Detect merge conflicts and provide guidance\n- Show commit diff between branches\n- Verify main branch is clean before merge\n- Push merged changes to remote\n\nEstimated effort: 2-3 days","acceptance_criteria":"- bd sync --merge successfully merges beads branch\n- Conflicts detected with helpful error message\n- bd sync --status shows clear diff\n- Works with protected main (user must have push access)\n- Git history is clean (no unnecessary merge commits)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-02T15:22:35.580873-08:00","updated_at":"2025-11-02T17:12:34.620481-08:00","closed_at":"2025-11-02T17:12:34.620486-08:00","dependencies":[{"issue_id":"bd-3396","depends_on_id":"bd-a101","type":"parent-child","created_at":"2025-11-02T15:22:48.376916-08:00","created_by":"stevey"}]}
 {"id":"bd-36320a04","content_hash":"883eb385fa9eded3826008fa6db3b842cabb2ce0e93a23293449f65024303fb7","title":"Add mutation channel to internal/rpc/server.go","description":"Add mutationChan chan MutationEvent to Server struct. Emit events on CreateIssue, UpdateIssue, DeleteIssue, AddComment. Non-blocking send with default case for full channel.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-10-29T19:42:29.860173-07:00","updated_at":"2025-10-31T18:31:27.928693-07:00","closed_at":"2025-10-31T18:31:27.928693-07:00"}
 {"id":"bd-36870264","content_hash":"fa3b422a3382fba9fe673a10145f6e787ca5c2f3c4966d84148dae89d1fa0e2e","title":"Enforce daemon singleton per workspace with file locking","description":"Agent in ~/src/wyvern discovered 4 simultaneous daemon processes running, causing infinite directory recursion (.beads/.beads/.beads/...). Each daemon used relative paths and created nested .beads/ directories.\n\nRoot cause: No singleton enforcement. Multiple `bd daemon` processes can start in same workspace.\n\nExpected: One daemon per workspace (each workspace = separate .beads/ dir with bd.sock)\nActual: Multiple daemons can run simultaneously in same workspace\n\nNote: Separate git clones = separate workspaces = separate daemons (correct). Git worktrees share .beads/ and have known limitations (documented, use --no-daemon).","design":"Use flock (file locking) on daemon socket or database file to enforce singleton:\n\n1. On daemon start, attempt exclusive lock on .beads/bd.sock or .beads/daemon.lock\n2. If lock held by another process, refuse to start (exit with clear error)\n3. Hold lock for lifetime of daemon process\n4. Release lock on daemon shutdown\n\nAlternative: Use PID file with stale detection (check if PID is still running)\n\nImplementation location: Daemon startup code in cmd/bd/ or internal/daemon/","acceptance_criteria":"1. Starting second daemon process in same workspace fails with clear error\n2. Test: Start daemon, attempt second start, verify failure\n3. Killing daemon releases lock, allowing new daemon to start\n4. No infinite .beads/ directory recursion possible\n5. Works correctly with auto-start mechanism","notes":"## Fix Summary\n\nSuccessfully prevented the nested .beads/.beads/ recursion bug by implementing two safeguards:\n\n1. **Path Canonicalization in FindDatabasePath()** (beads.go):\n   - Added filepath.Abs() + filepath.EvalSymlinks() to normalize all database paths\n   - Prevents relative path edge cases that create nested directories\n   - Ensures all daemons see the same canonical path\n\n2. **Nested Directory Detection** (daemon_lifecycle.go):\n   - Added explicit check for \".beads/.beads\" pattern in setupDaemonLock()\n   - Fails fast with clear error message if nested structure detected\n   - Provides user hints about proper usage\n\n## Root Cause\n\nThe daemon lock (added Oct 22, 2025) correctly prevents simultaneous daemons in the SAME workspace. However, when BEADS_DB used a relative path (e.g., \".beads/beads.db\") from inside the .beads directory, FindDatabasePath() would resolve it to a nested path creating a separate workspace:\n- First daemon: /workspace/.beads/beads.db\n- Second daemon from .beads/: /workspace/.beads/.beads/beads.db ← Different lock file!\n\n## Testing\n\nAll acceptance criteria passed:\n✅ 1. Second daemon start fails with \"daemon already running\" error\n✅ 2. Killing daemon releases lock, new daemon can start  \n✅ 3. No infinite .beads/ recursion possible (tested nested BEADS_DB path)\n✅ 4. Works with auto-start mechanism\n\nThe fix addresses the edge case while maintaining the existing lock mechanism's correctness.","status":"closed","priority":0,"issue_type":"bug","created_at":"2025-10-25T23:13:12.269549-07:00","updated_at":"2025-11-01T19:46:06.230339-07:00","closed_at":"2025-11-01T19:46:06.230339-07:00"}
 {"id":"bd-373c","content_hash":"2ee54c4542489d8d254d17a6fc2e2d581e99badd7a166b36799cdca4be94bcc6","title":"Daemon crashes silently when multiple .db files exist in .beads/","description":"When daemon detects multiple .db files (after filtering out .backup and vc.db files), it writes error details to .beads/daemon-error file before exiting.\n\nThe error file is checked when:\n1. Daemon discovery fails to connect (internal/daemon/discovery.go)\n2. Auto-start fails to yield a running daemon (cmd/bd/main.go)\n3. Daemon list shows 'daemon not responding' error\n\nThis makes the error immediately visible to users without requiring them to check daemon logs.\n\nFile created:  cmd/bd/daemon.go (writes daemon-error on multiple .db detection)\nFiles modified: \n- internal/daemon/discovery.go (reads daemon-error and surfaces in DaemonInfo.Error)\n- cmd/bd/main.go (displays daemon-error when auto-start fails)\n\nTesting: Create multiple .db files in .beads/, start daemon, verify error file created and shown in bd daemons list","notes":"Root cause: Daemon exits with os.Exit(1) when multiple .db files detected (daemon.go:1381), but error only goes to daemon log file. User sees 'daemon not responding' without knowing why.\n\nCurrent detection:\n- daemon.go filters out .backup and vc.db files\n- bd doctor detects multiple databases\n- Error message tells user to run 'bd init' or manually remove\n\nProblem: Error is not user-visible unless they check daemon logs.\n\nProposed fix options:\n1. Surface the error in 'bd info' and 'bd daemons list' output\n2. Add a hint in error messages to run 'bd doctor' when daemon fails\n3. Make daemon write error to a .beads/daemon-error file that gets checked\n4. Improve 'bd doctor' to run automatically when daemon is unhealthy","status":"closed","priority":0,"issue_type":"bug","created_at":"2025-10-31T21:08:03.389259-07:00","updated_at":"2025-11-01T11:13:48.029427-07:00","closed_at":"2025-11-01T11:13:48.029427-07:00","dependencies":[{"issue_id":"bd-373c","depends_on_id":"bd-2752a7a2","type":"discovered-from","created_at":"2025-10-31T21:08:03.390022-07:00","created_by":"stevey"}]}
@@ -59,7 +59,7 @@
 {"id":"bd-3e307cd4","content_hash":"2d95ea3b6835139e1fd266bbdcd0f683b5b4d26a1041516c4883beeb37b11ede","title":"File change test issue","description":"","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-29T19:11:28.425601-07:00","updated_at":"2025-10-31T12:00:43.176605-07:00","closed_at":"2025-10-31T12:00:43.176605-07:00"}
 {"id":"bd-3e3b","content_hash":"db612c737d8f330bb1ff1bbda043835d1318bb806970677ed768a69e15287653","title":"Add circular dependency detection to bd doctor","description":"Added cycle detection as Check #10 in bd doctor command. Uses same recursive CTE query as DetectCycles() to find circular dependencies. Reports error status with count and fix suggestion if cycles found.","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-11-01T20:18:23.416056-07:00","updated_at":"2025-11-01T20:18:26.76113-07:00","closed_at":"2025-11-01T20:18:26.76113-07:00"}
 {"id":"bd-3e9ddc31","content_hash":"4e03660281dbe2c069617fc8d723d546d6e5eb386142c0359b862747867a1b90","title":"Replace getStorageForRequest with Direct Access","description":"Replace all getStorageForRequest(req) calls with s.storage","acceptance_criteria":"- No references to getStorageForRequest() in codebase (except in deleted file)\n- All handlers use s.storage directly\n- Code compiles without errors\n\nFiles to update:\n- internal/rpc/server_issues_epics.go (~8 calls)\n- internal/rpc/server_labels_deps_comments.go (~4 calls)\n- internal/rpc/server_compact.go (~2 calls)\n- internal/rpc/server_export_import_auto.go (~2 calls)\n- internal/rpc/server_routing_validation_diagnostics.go (~1 call)\n\nPattern: store, err := s.getStorageForRequest(req) → store := s.storage","status":"closed","priority":1,"issue_type":"task","created_at":"2025-10-27T23:20:10.393759-07:00","updated_at":"2025-10-30T17:12:58.21613-07:00","closed_at":"2025-10-28T14:08:38.06721-07:00"}
-{"id":"bd-3ee2c7e9","content_hash":"a1a26c30e2d2d791d3dd5b3fe3a917304cb001b1d024e4627e46fd93c98bcf86","title":"Add \"bd daemons\" command for multi-daemon management","description":"Add a new \"bd daemons\" command with subcommands to manage daemon processes across all beads repositories/worktrees. Should show all running daemons with metadata (version, workspace, uptime, last sync), allow stopping/restarting individual daemons, auto-clean stale processes, view logs, and show exclusive lock status.","design":"Subcommands:\n- list: Show all running daemons with metadata (workspace, PID, version, socket path, uptime, last activity, exclusive lock status)\n- stop \u003cpath|pid\u003e: Gracefully stop a specific daemon\n- restart \u003cpath|pid\u003e: Stop and restart daemon\n- killall: Emergency stop all daemons\n- health: Verify each daemon responds to ping\n- logs \u003cpath\u003e: View daemon logs\n\nFeatures:\n- Auto-clean stale sockets/dead processes\n- Discovery: Scan for .beads/bd.sock files + running processes\n- Communication: Use existing socket protocol, add GET /status endpoint for metadata","status":"open","priority":1,"issue_type":"epic","created_at":"2025-10-26T16:53:40.970042-07:00","updated_at":"2025-10-31T20:36:49.355628-07:00"}
+{"id":"bd-3ee2c7e9","content_hash":"80a0101dd9082c194cd4f138dc116c0fc14d178d8afacb6b5b61ee863ee2eea7","title":"Add \"bd daemons\" command for multi-daemon management","description":"Add a new \"bd daemons\" command with subcommands to manage daemon processes across all beads repositories/worktrees. Should show all running daemons with metadata (version, workspace, uptime, last sync), allow stopping/restarting individual daemons, auto-clean stale processes, view logs, and show exclusive lock status.","design":"Subcommands:\n- list: Show all running daemons with metadata (workspace, PID, version, socket path, uptime, last activity, exclusive lock status)\n- stop \u003cpath|pid\u003e: Gracefully stop a specific daemon\n- restart \u003cpath|pid\u003e: Stop and restart daemon\n- killall: Emergency stop all daemons\n- health: Verify each daemon responds to ping\n- logs \u003cpath\u003e: View daemon logs\n\nFeatures:\n- Auto-clean stale sockets/dead processes\n- Discovery: Scan for .beads/bd.sock files + running processes\n- Communication: Use existing socket protocol, add GET /status endpoint for metadata","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-10-26T16:53:40.970042-07:00","updated_at":"2025-11-02T17:12:34.621017-08:00","closed_at":"2025-11-02T17:12:34.62102-08:00"}
 {"id":"bd-3f6a","content_hash":"dea84adf6513f60b44b15d110dcfbc97aee6f8e5d731f446e79c0974516f9c75","title":"Add concurrent import race condition tests","description":"Currently no tests verify behavior when multiple clones import simultaneously with external_ref matching.\n\nScenarios to test:\n1. Two clones import same external_ref update at same time\n2. Clone A imports while Clone B updates same issue\n3. Verify transaction isolation prevents corruption\n4. Document expected behavior (last-write-wins vs timestamp-based)\n\nRelated: bd-1022\nFiles: internal/importer/external_ref_test.go","status":"closed","priority":3,"issue_type":"task","created_at":"2025-11-02T15:32:11.286956-08:00","updated_at":"2025-11-02T16:11:16.127009-08:00","closed_at":"2025-11-02T16:11:16.127009-08:00"}
 {"id":"bd-3f80d9e0","content_hash":"10716746db7f5efcb9380e184d3ae8abfefd5b84d500340899e13e3b81d4e02a","title":"Improve internal/daemon test coverage (currently 22.5%)","description":"Daemon functionality needs better coverage:\n- Auto-start behavior\n- Lock file management\n- Discovery mechanisms\n- Connection handling\n- Error recovery","status":"open","priority":2,"issue_type":"task","created_at":"2025-10-29T14:06:30.832728-07:00","updated_at":"2025-10-30T17:12:58.186077-07:00"}
 {"id":"bd-40a0","content_hash":"44ac6f2956fce0d7f1fa4d6f4e09b93b14bdd914c1199ed68dedf9c85fbdf4cf","title":"bd doctor should check for multiple DBs, multiple JSONLs, daemon health","description":"","design":"\nCurrently bd doctor only checks:\n- .beads/ directory exists\n- Database version vs CLI version  \n- ID format (hash vs sequential)\n- CLI version vs latest GitHub release\n\nIt should ALSO check for operational issues that cause silent failures:\n\n1. **Multiple database files** (*.db excluding backups and vc.db)\n   - Warn if multiple *.db files found (ambiguous which to use)\n   - Suggest running 'bd migrate' or manually removing old DBs\n\n2. **Multiple JSONL files** \n   - Check for both issues.jsonl and beads.jsonl\n   - Warn about ambiguity, suggest standardizing on one\n\n3. **Daemon health** (integrate bd daemons health)\n   - Check if daemon running for this workspace\n   - Detect version mismatches between daemon and CLI\n   - Detect zombie daemons (running but unresponsive)\n   - Detect stale daemon.pid files\n\n4. **Database-JSONL sync issues**\n   - Check if JSONL is newer than last import\n   - Warn if they're out of sync\n\n5. **Permissions issues**\n   - Check if .beads/ directory is writable\n   - Check if database file is readable/writable\n\nImplementation approach:\n- Add new check functions to doctor.go\n- Reuse logic from bd daemons health\n- Keep checks fast (\u003c 1 second total)\n- Output actionable fixes for each issue\n","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-10-31T21:16:47.042913-07:00","updated_at":"2025-10-31T21:21:27.093525-07:00","closed_at":"2025-10-31T21:21:27.093525-07:00"}