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{"id":"bd-24","title":"Update documentation after code health cleanup","description":"Update all documentation to reflect code structure changes after cleanup phases complete.\n\nDocumentation to update:\n1. **AGENTS.md** - Update file structure references\n2. **CONTRIBUTING.md** (if exists) - Update build/test instructions\n3. **Code comments** - Update any outdated references\n4. **Package documentation** - Update godoc for reorganized packages\n\nNew documentation to add:\n1. **internal/util/README.md** - Document shared utilities\n2. **internal/debug/README.md** - Document debug logging\n3. **internal/rpc/README.md** - Document new file organization\n4. **internal/storage/sqlite/migrations/README.md** - Migration system docs\n\nImpact: Keeps documentation in sync with code","acceptance_criteria":"- All documentation references to deleted files removed\n- New package READMEs written\n- Code comments updated for reorganized code\n- Migration guide for developers (if needed)\n- Architecture diagrams updated (if they exist)","status":"open","priority":2,"issue_type":"task","created_at":"2025-10-27T20:32:00.141028-07:00","updated_at":"2025-10-27T22:22:23.820099-07:00","labels":["documentation","phase-4"],"dependencies":[{"issue_id":"bd-24","depends_on_id":"bd-26","type":"parent-child","created_at":"2025-10-27T20:32:00.1423-07:00","created_by":"daemon"}]}
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{"id":"bd-24","title":"Update documentation after code health cleanup","description":"Update all documentation to reflect code structure changes after cleanup phases complete.\n\nDocumentation to update:\n1. **AGENTS.md** - Update file structure references\n2. **CONTRIBUTING.md** (if exists) - Update build/test instructions\n3. **Code comments** - Update any outdated references\n4. **Package documentation** - Update godoc for reorganized packages\n\nNew documentation to add:\n1. **internal/util/README.md** - Document shared utilities\n2. **internal/debug/README.md** - Document debug logging\n3. **internal/rpc/README.md** - Document new file organization\n4. **internal/storage/sqlite/migrations/README.md** - Migration system docs\n\nImpact: Keeps documentation in sync with code","acceptance_criteria":"- All documentation references to deleted files removed\n- New package READMEs written\n- Code comments updated for reorganized code\n- Migration guide for developers (if needed)\n- Architecture diagrams updated (if they exist)","status":"open","priority":2,"issue_type":"task","created_at":"2025-10-27T20:32:00.141028-07:00","updated_at":"2025-10-27T22:22:23.820099-07:00","labels":["documentation","phase-4"],"dependencies":[{"issue_id":"bd-24","depends_on_id":"bd-26","type":"parent-child","created_at":"2025-10-27T20:32:00.1423-07:00","created_by":"daemon"}]}
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{"id":"bd-25","title":"Run final validation and cleanup checks","description":"Final validation pass to ensure all cleanup objectives met and no regressions introduced.\n\nValidation checklist:\n1. Dead code verification: `go run golang.org/x/tools/cmd/deadcode@latest -test ./...`\n2. Test coverage: `go test -cover ./...`\n3. Build verification: `go build ./cmd/bd/`\n4. Linting: `golangci-lint run`\n5. Integration tests\n6. Metrics verification\n7. Git clean check\n\nFinal metrics to report:\n- LOC removed: ~____\n- Files deleted: ____\n- Files created: ____\n- Test coverage: ____%\n- Build time: ____ (before/after)\n- Test run time: ____ (before/after)\n\nImpact: Confirms all cleanup objectives achieved successfully","acceptance_criteria":"- Zero unreachable functions per deadcode analyzer\n- All tests pass: `go test ./...`\n- Test coverage maintained or improved\n- Builds cleanly: `go build ./...`\n- Linting shows improvements\n- Integration tests all pass\n- LOC reduction target achieved (~2,500 LOC)\n- No unintended behavior changes\n- Git commit messages document all changes","notes":"Validation completed:\n- LOC: 52,372 lines total\n- Dead code: 4 functions in import_shared.go (tracked in bd-18)\n- Build: ✓ Successful\n- Test coverage: ~20-82% across packages\n- Test failure: TestTwoCloneCollision (timeout issue)\n- Linting: errcheck warnings present (defer close, fmt errors)\n- Test time: ~20s\n\nIssues found:\n1. bd-18: Remove unreachable import functions (renameImportedIssuePrefixes, etc)\n2. TestTwoCloneCollision: Daemon killall timeout causing test failure\n3. Linting: errcheck violations need fixing","status":"closed","priority":1,"issue_type":"task","created_at":"2025-10-27T20:32:00.14166-07:00","updated_at":"2025-10-28T14:11:25.218876-07:00","closed_at":"2025-10-28T14:11:25.218801-07:00","labels":["phase-4","validation"],"dependencies":[{"issue_id":"bd-25","depends_on_id":"bd-26","type":"parent-child","created_at":"2025-10-27T20:32:00.144113-07:00","created_by":"daemon"}]}
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{"id":"bd-25","title":"Run final validation and cleanup checks","description":"Final validation pass to ensure all cleanup objectives met and no regressions introduced.\n\nValidation checklist:\n1. Dead code verification: `go run golang.org/x/tools/cmd/deadcode@latest -test ./...`\n2. Test coverage: `go test -cover ./...`\n3. Build verification: `go build ./cmd/bd/`\n4. Linting: `golangci-lint run`\n5. Integration tests\n6. Metrics verification\n7. Git clean check\n\nFinal metrics to report:\n- LOC removed: ~____\n- Files deleted: ____\n- Files created: ____\n- Test coverage: ____%\n- Build time: ____ (before/after)\n- Test run time: ____ (before/after)\n\nImpact: Confirms all cleanup objectives achieved successfully","acceptance_criteria":"- Zero unreachable functions per deadcode analyzer\n- All tests pass: `go test ./...`\n- Test coverage maintained or improved\n- Builds cleanly: `go build ./...`\n- Linting shows improvements\n- Integration tests all pass\n- LOC reduction target achieved (~2,500 LOC)\n- No unintended behavior changes\n- Git commit messages document all changes","notes":"Validation completed:\n- LOC: 52,372 lines total\n- Dead code: 4 functions in import_shared.go (tracked in bd-18)\n- Build: ✓ Successful\n- Test coverage: ~20-82% across packages\n- Test failure: TestTwoCloneCollision (timeout issue)\n- Linting: errcheck warnings present (defer close, fmt errors)\n- Test time: ~20s\n\nIssues found:\n1. bd-18: Remove unreachable import functions (renameImportedIssuePrefixes, etc)\n2. TestTwoCloneCollision: Daemon killall timeout causing test failure\n3. Linting: errcheck violations need fixing","status":"closed","priority":1,"issue_type":"task","created_at":"2025-10-27T20:32:00.14166-07:00","updated_at":"2025-10-28T14:11:25.218876-07:00","closed_at":"2025-10-28T14:11:25.218801-07:00","labels":["phase-4","validation"],"dependencies":[{"issue_id":"bd-25","depends_on_id":"bd-26","type":"parent-child","created_at":"2025-10-27T20:32:00.144113-07:00","created_by":"daemon"}]}
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{"id":"bd-26","title":"Code Health \u0026 Technical Debt Cleanup","description":"Comprehensive codebase cleanup to remove dead code, refactor monolithic files, deduplicate utilities, and improve maintainability. Based on ultrathink code health analysis conducted 2025-10-27.\n\nGoals:\n- Remove ~1,500 LOC of dead/unreachable code\n- Split 2 monolithic files (server.go 2,273 LOC, sqlite.go 2,136 LOC) into focused modules\n- Deduplicate scattered utility functions (normalizeLabels, BD_DEBUG checks)\n- Consolidate test coverage (2,019 LOC of collision tests)\n- Improve code navigation and reduce merge conflicts\n\nImpact: Reduces codebase by ~6-8%, improves maintainability, faster CI/CD\n\nEstimated Effort: 11 days across 4 phases","acceptance_criteria":"- All unreachable code identified by `deadcode` analyzer is removed\n- RPC server split into \u003c500 LOC files with clear responsibilities\n- Duplicate utility functions centralized\n- Test coverage maintained or improved\n- All tests passing\n- Documentation updated","status":"open","priority":2,"issue_type":"epic","created_at":"2025-10-27T20:39:22.22227-07:00","updated_at":"2025-10-27T22:22:23.820838-07:00","labels":["cleanup","epic"]}
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{"id":"bd-26","title":"Code Health \u0026 Technical Debt Cleanup","description":"Comprehensive codebase cleanup to remove dead code, refactor monolithic files, deduplicate utilities, and improve maintainability. Based on ultrathink code health analysis conducted 2025-10-27.\n\nGoals:\n- Remove ~1,500 LOC of dead/unreachable code\n- Split 2 monolithic files (server.go 2,273 LOC, sqlite.go 2,136 LOC) into focused modules\n- Deduplicate scattered utility functions (normalizeLabels, BD_DEBUG checks)\n- Consolidate test coverage (2,019 LOC of collision tests)\n- Improve code navigation and reduce merge conflicts\n\nImpact: Reduces codebase by ~6-8%, improves maintainability, faster CI/CD\n\nEstimated Effort: 11 days across 4 phases","acceptance_criteria":"- All unreachable code identified by `deadcode` analyzer is removed\n- RPC server split into \u003c500 LOC files with clear responsibilities\n- Duplicate utility functions centralized\n- Test coverage maintained or improved\n- All tests passing\n- Documentation updated","status":"open","priority":2,"issue_type":"epic","created_at":"2025-10-27T20:39:22.22227-07:00","updated_at":"2025-10-27T22:22:23.820838-07:00","labels":["cleanup","epic"]}
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{"id":"bd-27","title":"Split internal/rpc/server.go into focused modules","description":"The file `internal/rpc/server.go` is 2,273 lines with 50+ methods, making it difficult to navigate and prone to merge conflicts. Split into 8 focused files with clear responsibilities.\n\nCurrent structure: Single 2,273-line file with:\n- Connection handling\n- Request routing\n- All 40+ RPC method implementations\n- Storage caching\n- Health checks \u0026 metrics\n- Cleanup loops\n\nTarget structure:\n```\ninternal/rpc/\n├── server.go # Core server, connection handling (~300 lines)\n├── methods_issue.go # Issue operations (~400 lines)\n├── methods_deps.go # Dependency operations (~200 lines)\n├── methods_labels.go # Label operations (~150 lines)\n├── methods_ready.go # Ready work queries (~150 lines)\n├── methods_compact.go # Compaction operations (~200 lines)\n├── methods_comments.go # Comment operations (~150 lines)\n├── storage_cache.go # Storage caching logic (~300 lines)\n└── health.go # Health \u0026 metrics (~200 lines)\n```\n\nMigration strategy:\n1. Create new files with appropriate methods\n2. Keep `server.go` as main file with core server logic\n3. Test incrementally after each file split\n4. Final verification with full test suite","acceptance_criteria":"- All 50 methods split into appropriate files\n- Each file \u003c500 LOC\n- All methods remain on `*Server` receiver (no behavior change)\n- All tests pass: `go test ./internal/rpc/...`\n- Verify daemon works: start daemon, run operations, check health\n- Update internal documentation if needed\n- No change to public API","status":"closed","priority":1,"issue_type":"task","created_at":"2025-10-27T21:23:07.023387-07:00","updated_at":"2025-10-28T14:11:04.399811-07:00","closed_at":"2025-10-28T14:11:04.399811-07:00"}
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{"id":"bd-27","title":"Split internal/rpc/server.go into focused modules","description":"The file `internal/rpc/server.go` is 2,273 lines with 50+ methods, making it difficult to navigate and prone to merge conflicts. Split into 8 focused files with clear responsibilities.\n\nCurrent structure: Single 2,273-line file with:\n- Connection handling\n- Request routing\n- All 40+ RPC method implementations\n- Storage caching\n- Health checks \u0026 metrics\n- Cleanup loops\n\nTarget structure:\n```\ninternal/rpc/\n├── server.go # Core server, connection handling (~300 lines)\n├── methods_issue.go # Issue operations (~400 lines)\n├── methods_deps.go # Dependency operations (~200 lines)\n├── methods_labels.go # Label operations (~150 lines)\n├── methods_ready.go # Ready work queries (~150 lines)\n├── methods_compact.go # Compaction operations (~200 lines)\n├── methods_comments.go # Comment operations (~150 lines)\n├── storage_cache.go # Storage caching logic (~300 lines)\n└── health.go # Health \u0026 metrics (~200 lines)\n```\n\nMigration strategy:\n1. Create new files with appropriate methods\n2. Keep `server.go` as main file with core server logic\n3. Test incrementally after each file split\n4. Final verification with full test suite","acceptance_criteria":"- All 50 methods split into appropriate files\n- Each file \u003c500 LOC\n- All methods remain on `*Server` receiver (no behavior change)\n- All tests pass: `go test ./internal/rpc/...`\n- Verify daemon works: start daemon, run operations, check health\n- Update internal documentation if needed\n- No change to public API","status":"open","priority":1,"issue_type":"task","created_at":"2025-10-27T21:23:07.023387-07:00","updated_at":"2025-10-27T22:22:23.821216-07:00"}
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{"id":"bd-28","title":"Fix auto-import creating duplicates instead of updating issues","description":"ROOT CAUSE: server_export_import_auto.go line 221 uses ResolveCollisions: true for ALL auto-imports. This is wrong.\n\nProblem:\n- ResolveCollisions is for branch merges (different issues with same ID)\n- Auto-import should UPDATE existing issues, not create duplicates\n- Every git pull creates NEW duplicate issues with different IDs\n- Two agents ping-pong creating endless duplicates\n\nEvidence:\n- 31 duplicate groups found (bd duplicates)\n- bd-236-246 are duplicates of bd-224-235\n- Both agents keep pulling and creating more duplicates\n- JSONL file grows endlessly with duplicates\n\nThe Fix:\nChange checkAndAutoImportIfStale in server_export_import_auto.go:\n- Remove ResolveCollisions: true (line 221)\n- Use normal import logic that updates existing issues by ID\n- Only use ResolveCollisions for explicit bd import --resolve-collisions\n\nImpact: Critical - makes beads unusable for multi-agent workflows","acceptance_criteria":"- Auto-import does NOT create duplicates when pulling git changes\n- Existing issues are updated in-place by ID match\n- No ping-pong commits between agents\n- Test: two agents updating same issue should NOT create duplicates\n- bd duplicates shows 0 groups after fix","status":"closed","priority":0,"issue_type":"bug","created_at":"2025-10-27T21:48:57.733846-07:00","updated_at":"2025-10-27T22:26:40.627239-07:00","closed_at":"2025-10-27T22:26:40.627239-07:00"}
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{"id":"bd-28","title":"Fix auto-import creating duplicates instead of updating issues","description":"ROOT CAUSE: server_export_import_auto.go line 221 uses ResolveCollisions: true for ALL auto-imports. This is wrong.\n\nProblem:\n- ResolveCollisions is for branch merges (different issues with same ID)\n- Auto-import should UPDATE existing issues, not create duplicates\n- Every git pull creates NEW duplicate issues with different IDs\n- Two agents ping-pong creating endless duplicates\n\nEvidence:\n- 31 duplicate groups found (bd duplicates)\n- bd-236-246 are duplicates of bd-224-235\n- Both agents keep pulling and creating more duplicates\n- JSONL file grows endlessly with duplicates\n\nThe Fix:\nChange checkAndAutoImportIfStale in server_export_import_auto.go:\n- Remove ResolveCollisions: true (line 221)\n- Use normal import logic that updates existing issues by ID\n- Only use ResolveCollisions for explicit bd import --resolve-collisions\n\nImpact: Critical - makes beads unusable for multi-agent workflows","acceptance_criteria":"- Auto-import does NOT create duplicates when pulling git changes\n- Existing issues are updated in-place by ID match\n- No ping-pong commits between agents\n- Test: two agents updating same issue should NOT create duplicates\n- bd duplicates shows 0 groups after fix","status":"closed","priority":0,"issue_type":"bug","created_at":"2025-10-27T21:48:57.733846-07:00","updated_at":"2025-10-27T22:26:40.627239-07:00","closed_at":"2025-10-27T22:26:40.627239-07:00"}
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{"id":"bd-29","title":"Remove Daemon Storage Cache","description":"The daemon's multi-repo storage cache is the root cause of stale data bugs. Since global daemon is deprecated, we only ever serve one repository, making the cache unnecessary complexity. This epic removes the cache entirely for simpler, more reliable direct storage access.","design":"For local daemon (single repository), eliminate the cache entirely:\n- Use s.storage field directly (opened at daemon startup)\n- Remove getStorageForRequest() routing logic\n- Remove server_cache_storage.go entirely (~300 lines)\n- Remove cache-related tests\n- Simplify Server struct\n\nBenefits:\n✅ No staleness bugs: Always using live SQLite connection\n✅ Simpler code: Remove ~300 lines of cache management\n✅ Easier debugging: Direct storage access, no cache indirection\n✅ Same performance: Cache was always 1 entry for local daemon anyway","acceptance_criteria":"- Daemon has no storage cache code\n- All tests pass\n- MCP integration works\n- No stale data bugs\n- Documentation updated\n- Performance validated","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-10-27T22:55:10.388648-07:00","updated_at":"2025-10-28T14:08:38.061209-07:00","closed_at":"2025-10-28T14:08:38.061209-07:00"}
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{"id":"bd-29","title":"Remove Daemon Storage Cache","description":"The daemon's multi-repo storage cache is the root cause of stale data bugs. Since global daemon is deprecated, we only ever serve one repository, making the cache unnecessary complexity. This epic removes the cache entirely for simpler, more reliable direct storage access.","design":"For local daemon (single repository), eliminate the cache entirely:\n- Use s.storage field directly (opened at daemon startup)\n- Remove getStorageForRequest() routing logic\n- Remove server_cache_storage.go entirely (~300 lines)\n- Remove cache-related tests\n- Simplify Server struct\n\nBenefits:\n✅ No staleness bugs: Always using live SQLite connection\n✅ Simpler code: Remove ~300 lines of cache management\n✅ Easier debugging: Direct storage access, no cache indirection\n✅ Same performance: Cache was always 1 entry for local daemon anyway","acceptance_criteria":"- Daemon has no storage cache code\n- All tests pass\n- MCP integration works\n- No stale data bugs\n- Documentation updated\n- Performance validated","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-10-27T22:55:10.388648-07:00","updated_at":"2025-10-28T14:08:38.061209-07:00","closed_at":"2025-10-28T14:08:38.061209-07:00"}
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{"id":"bd-3","title":"Investigate and upgrade to modernc.org/sqlite 1.39.1+","description":"We had to pin modernc.org/sqlite to v1.38.2 due to a FOREIGN KEY constraint regression in v1.39.1 (SQLite 3.50.4).\n\n**Issue:** [deleted:bd-47], GH #144\n\n**Symptom:** CloseIssue fails with \"FOREIGN KEY constraint failed (787)\" when called via MCP/daemon, but works fine via CLI.\n\n**Root Cause:** Unknown - likely stricter FK enforcement in SQLite 3.50.4 or modernc.org wrapper changes.\n\n**Workaround:** Pinned to v1.38.2 (SQLite 3.49.x)\n\n**TODO:**\n1. Monitor modernc.org/sqlite releases for fixes\n2. Check SQLite 3.50.5+ changelogs for FK-related fixes\n3. Investigate why daemon mode fails but CLI succeeds (connection reuse? transaction isolation?)\n4. Consider filing upstream issue with reproducible test case\n5. Upgrade when safe","status":"open","priority":2,"issue_type":"task","created_at":"2025-10-24T11:49:12.836292-07:00","updated_at":"2025-10-27T22:22:23.813745-07:00"}
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{"id":"bd-3","title":"Investigate and upgrade to modernc.org/sqlite 1.39.1+","description":"We had to pin modernc.org/sqlite to v1.38.2 due to a FOREIGN KEY constraint regression in v1.39.1 (SQLite 3.50.4).\n\n**Issue:** [deleted:bd-47], GH #144\n\n**Symptom:** CloseIssue fails with \"FOREIGN KEY constraint failed (787)\" when called via MCP/daemon, but works fine via CLI.\n\n**Root Cause:** Unknown - likely stricter FK enforcement in SQLite 3.50.4 or modernc.org wrapper changes.\n\n**Workaround:** Pinned to v1.38.2 (SQLite 3.49.x)\n\n**TODO:**\n1. Monitor modernc.org/sqlite releases for fixes\n2. Check SQLite 3.50.5+ changelogs for FK-related fixes\n3. Investigate why daemon mode fails but CLI succeeds (connection reuse? transaction isolation?)\n4. Consider filing upstream issue with reproducible test case\n5. Upgrade when safe","status":"open","priority":2,"issue_type":"task","created_at":"2025-10-24T11:49:12.836292-07:00","updated_at":"2025-10-27T22:22:23.813745-07:00"}
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@@ -48,6 +48,7 @@
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{"id":"bd-52","title":"Integration Testing","description":"Verify cache removal doesn't break any workflows","acceptance_criteria":"- All test cases pass\n- No stale data observed\n- Performance is same or better\n- MCP works as before\n\nTest cases:\n1. Basic daemon operations (bd daemon --stop, bd daemon, bd list, bd create, bd show)\n2. Auto-import/export cycle (edit beads.jsonl externally, bd list auto-imports)\n3. Git workflow (git pull updates beads.jsonl, bd list shows pulled issues)\n4. Concurrent operations (multiple bd commands simultaneously)\n5. Daemon health (bd daemon --health, bd daemon --metrics)\n6. MCP operations (test MCP server with multiple repos, verify project switching)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-10-28T10:50:15.126668-07:00","updated_at":"2025-10-28T10:50:15.126668-07:00","closed_at":"2025-10-28T10:49:20.471129-07:00"}
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{"id":"bd-52","title":"Integration Testing","description":"Verify cache removal doesn't break any workflows","acceptance_criteria":"- All test cases pass\n- No stale data observed\n- Performance is same or better\n- MCP works as before\n\nTest cases:\n1. Basic daemon operations (bd daemon --stop, bd daemon, bd list, bd create, bd show)\n2. Auto-import/export cycle (edit beads.jsonl externally, bd list auto-imports)\n3. Git workflow (git pull updates beads.jsonl, bd list shows pulled issues)\n4. Concurrent operations (multiple bd commands simultaneously)\n5. Daemon health (bd daemon --health, bd daemon --metrics)\n6. MCP operations (test MCP server with multiple repos, verify project switching)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-10-28T10:50:15.126668-07:00","updated_at":"2025-10-28T10:50:15.126668-07:00","closed_at":"2025-10-28T10:49:20.471129-07:00"}
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{"id":"bd-53","title":"Remove Daemon Storage Cache","description":"The daemon's multi-repo storage cache is the root cause of stale data bugs. Since global daemon is deprecated, we only ever serve one repository, making the cache unnecessary complexity. This epic removes the cache entirely for simpler, more reliable direct storage access.","design":"For local daemon (single repository), eliminate the cache entirely:\n- Use s.storage field directly (opened at daemon startup)\n- Remove getStorageForRequest() routing logic\n- Remove server_cache_storage.go entirely (~300 lines)\n- Remove cache-related tests\n- Simplify Server struct\n\nBenefits:\n✅ No staleness bugs: Always using live SQLite connection\n✅ Simpler code: Remove ~300 lines of cache management\n✅ Easier debugging: Direct storage access, no cache indirection\n✅ Same performance: Cache was always 1 entry for local daemon anyway","acceptance_criteria":"- Daemon has no storage cache code\n- All tests pass\n- MCP integration works\n- No stale data bugs\n- Documentation updated\n- Performance validated","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-10-28T10:50:15.126939-07:00","updated_at":"2025-10-28T10:50:15.126939-07:00","closed_at":"2025-10-28T10:49:53.612049-07:00"}
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{"id":"bd-53","title":"Remove Daemon Storage Cache","description":"The daemon's multi-repo storage cache is the root cause of stale data bugs. Since global daemon is deprecated, we only ever serve one repository, making the cache unnecessary complexity. This epic removes the cache entirely for simpler, more reliable direct storage access.","design":"For local daemon (single repository), eliminate the cache entirely:\n- Use s.storage field directly (opened at daemon startup)\n- Remove getStorageForRequest() routing logic\n- Remove server_cache_storage.go entirely (~300 lines)\n- Remove cache-related tests\n- Simplify Server struct\n\nBenefits:\n✅ No staleness bugs: Always using live SQLite connection\n✅ Simpler code: Remove ~300 lines of cache management\n✅ Easier debugging: Direct storage access, no cache indirection\n✅ Same performance: Cache was always 1 entry for local daemon anyway","acceptance_criteria":"- Daemon has no storage cache code\n- All tests pass\n- MCP integration works\n- No stale data bugs\n- Documentation updated\n- Performance validated","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-10-28T10:50:15.126939-07:00","updated_at":"2025-10-28T10:50:15.126939-07:00","closed_at":"2025-10-28T10:49:53.612049-07:00"}
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{"id":"bd-54","title":"Fix TestTwoCloneCollision timeout","description":"","status":"open","priority":1,"issue_type":"bug","created_at":"2025-10-28T14:11:25.219607-07:00","updated_at":"2025-10-28T14:11:25.219607-07:00"}
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{"id":"bd-54","title":"Fix TestTwoCloneCollision timeout","description":"","status":"open","priority":1,"issue_type":"bug","created_at":"2025-10-28T14:11:25.219607-07:00","updated_at":"2025-10-28T14:11:25.219607-07:00"}
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{"id":"bd-55","title":"Split internal/rpc/server.go into focused modules","description":"The file `internal/rpc/server.go` is 2,273 lines with 50+ methods, making it difficult to navigate and prone to merge conflicts. Split into 8 focused files with clear responsibilities.\n\nCurrent structure: Single 2,273-line file with:\n- Connection handling\n- Request routing\n- All 40+ RPC method implementations\n- Storage caching\n- Health checks \u0026 metrics\n- Cleanup loops\n\nTarget structure:\n```\ninternal/rpc/\n├── server.go # Core server, connection handling (~300 lines)\n├── methods_issue.go # Issue operations (~400 lines)\n├── methods_deps.go # Dependency operations (~200 lines)\n├── methods_labels.go # Label operations (~150 lines)\n├── methods_ready.go # Ready work queries (~150 lines)\n├── methods_compact.go # Compaction operations (~200 lines)\n├── methods_comments.go # Comment operations (~150 lines)\n├── storage_cache.go # Storage caching logic (~300 lines)\n└── health.go # Health \u0026 metrics (~200 lines)\n```\n\nMigration strategy:\n1. Create new files with appropriate methods\n2. Keep `server.go` as main file with core server logic\n3. Test incrementally after each file split\n4. Final verification with full test suite","acceptance_criteria":"- All 50 methods split into appropriate files\n- Each file \u003c500 LOC\n- All methods remain on `*Server` receiver (no behavior change)\n- All tests pass: `go test ./internal/rpc/...`\n- Verify daemon works: start daemon, run operations, check health\n- Update internal documentation if needed\n- No change to public API","status":"closed","priority":1,"issue_type":"task","created_at":"2025-10-28T14:21:37.51524-07:00","updated_at":"2025-10-28T14:21:37.51524-07:00","closed_at":"2025-10-28T14:11:04.399811-07:00"}
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{"id":"bd-6","title":"Add optional post-merge git hook example for bd sync","description":"Create example git hook that auto-runs bd sync after git pull/merge.\n\nAdd to examples/git-hooks/:\n- post-merge hook that checks if .beads/issues.jsonl changed\n- If changed: run `bd sync` automatically\n- Make it optional/documented (not auto-installed)\n\nBenefits:\n- Zero-friction sync after git pull\n- Complements auto-detection as belt-and-suspenders\n\nNote: post-merge hook already exists for pre-commit/post-merge. Extend it to support sync.","status":"open","priority":2,"issue_type":"task","created_at":"2025-10-25T22:47:14.668842-07:00","updated_at":"2025-10-27T22:22:23.814647-07:00"}
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{"id":"bd-6","title":"Add optional post-merge git hook example for bd sync","description":"Create example git hook that auto-runs bd sync after git pull/merge.\n\nAdd to examples/git-hooks/:\n- post-merge hook that checks if .beads/issues.jsonl changed\n- If changed: run `bd sync` automatically\n- Make it optional/documented (not auto-installed)\n\nBenefits:\n- Zero-friction sync after git pull\n- Complements auto-detection as belt-and-suspenders\n\nNote: post-merge hook already exists for pre-commit/post-merge. Extend it to support sync.","status":"open","priority":2,"issue_type":"task","created_at":"2025-10-25T22:47:14.668842-07:00","updated_at":"2025-10-27T22:22:23.814647-07:00"}
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{"id":"bd-7","title":"Enforce daemon singleton per workspace with file locking","description":"Agent in ~/src/wyvern discovered 4 simultaneous daemon processes running, causing infinite directory recursion (.beads/.beads/.beads/...). Each daemon used relative paths and created nested .beads/ directories.\n\nRoot cause: No singleton enforcement. Multiple `bd daemon` processes can start in same workspace.\n\nExpected: One daemon per workspace (each workspace = separate .beads/ dir with bd.sock)\nActual: Multiple daemons can run simultaneously in same workspace\n\nNote: Separate git clones = separate workspaces = separate daemons (correct). Git worktrees share .beads/ and have known limitations (documented, use --no-daemon).","design":"Use flock (file locking) on daemon socket or database file to enforce singleton:\n\n1. On daemon start, attempt exclusive lock on .beads/bd.sock or .beads/daemon.lock\n2. If lock held by another process, refuse to start (exit with clear error)\n3. Hold lock for lifetime of daemon process\n4. Release lock on daemon shutdown\n\nAlternative: Use PID file with stale detection (check if PID is still running)\n\nImplementation location: Daemon startup code in cmd/bd/ or internal/daemon/","acceptance_criteria":"1. Starting second daemon process in same workspace fails with clear error\n2. Test: Start daemon, attempt second start, verify failure\n3. Killing daemon releases lock, allowing new daemon to start\n4. No infinite .beads/ directory recursion possible\n5. Works correctly with auto-start mechanism","status":"in_progress","priority":0,"issue_type":"bug","created_at":"2025-10-25T23:13:12.269549-07:00","updated_at":"2025-10-27T22:22:23.814937-07:00"}
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{"id":"bd-7","title":"Enforce daemon singleton per workspace with file locking","description":"Agent in ~/src/wyvern discovered 4 simultaneous daemon processes running, causing infinite directory recursion (.beads/.beads/.beads/...). Each daemon used relative paths and created nested .beads/ directories.\n\nRoot cause: No singleton enforcement. Multiple `bd daemon` processes can start in same workspace.\n\nExpected: One daemon per workspace (each workspace = separate .beads/ dir with bd.sock)\nActual: Multiple daemons can run simultaneously in same workspace\n\nNote: Separate git clones = separate workspaces = separate daemons (correct). Git worktrees share .beads/ and have known limitations (documented, use --no-daemon).","design":"Use flock (file locking) on daemon socket or database file to enforce singleton:\n\n1. On daemon start, attempt exclusive lock on .beads/bd.sock or .beads/daemon.lock\n2. If lock held by another process, refuse to start (exit with clear error)\n3. Hold lock for lifetime of daemon process\n4. Release lock on daemon shutdown\n\nAlternative: Use PID file with stale detection (check if PID is still running)\n\nImplementation location: Daemon startup code in cmd/bd/ or internal/daemon/","acceptance_criteria":"1. Starting second daemon process in same workspace fails with clear error\n2. Test: Start daemon, attempt second start, verify failure\n3. Killing daemon releases lock, allowing new daemon to start\n4. No infinite .beads/ directory recursion possible\n5. Works correctly with auto-start mechanism","status":"in_progress","priority":0,"issue_type":"bug","created_at":"2025-10-25T23:13:12.269549-07:00","updated_at":"2025-10-27T22:22:23.814937-07:00"}
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{"id":"bd-8","title":"Daemon fails to auto-import after git pull updates JSONL","description":"After git pull updates .beads/issues.jsonl, daemon doesn't automatically re-import changes, causing stale data to be shown until next sync cycle (up to 5 minutes).\n\nReproduction:\n1. Repo A: Close issues, export, commit, push\n2. Repo B: git pull (successfully updates .beads/issues.jsonl)\n3. bd show \u003cissue\u003e shows OLD status from daemon's SQLite db\n4. JSONL on disk has correct new status\n\nRoot cause: Daemon sync cycle runs on timer (5min). When user manually runs git pull, daemon doesn't detect JSONL was updated externally and continues serving stale data from SQLite.\n\nImpact:\n- High for AI agents using beads in git workflows\n- Breaks fundamental git-as-source-of-truth model\n- Confusing UX: git log shows commit, bd shows old state\n- Data consistency issues between JSONL and daemon\n\nSee WYVERN_SYNC_ISSUE.md for full analysis.","design":"Three possible solutions:\n\nOption 1: Auto-detect and re-import (recommended)\n- Before serving any bd command, check if .beads/issues.jsonl mtime \u003e last import time\n- If newer, auto-import before processing request\n- Fast check, minimal overhead\n\nOption 2: File watcher in daemon\n- Daemon watches .beads/issues.jsonl for mtime changes\n- Auto-imports when file changes\n- More complex, requires file watching infrastructure\n\nOption 3: Explicit sync command\n- User runs `bd sync` after git pull\n- Manual, error-prone, defeats automation\n\nRecommended: Option 1 (auto-detect) + Option 3 (explicit sync) as fallback.","acceptance_criteria":"1. After git pull updates .beads/issues.jsonl, next bd command sees fresh data\n2. No manual import or daemon restart required\n3. Performance impact \u003c 10ms per command (mtime check is fast)\n4. Works in both daemon and non-daemon modes\n5. Test: Two repo clones, update in one, pull in other, verify immediate sync","notes":"**Current Status (2025-10-26):**\n\n✅ **Completed (bd-128):**\n- Created internal/autoimport package with staleness detection\n- Daemon can detect when JSONL is newer than last import\n- Infrastructure exists to call import logic\n\n❌ **Remaining Work:**\nThe daemon's importFunc in server.go (line 2096-2102) is a stub that just logs a notice. It needs to actually import the issues.\n\n**Problem:** \n- importIssuesCore is in cmd/bd package, not accessible from internal/rpc\n- daemon's handleImport() returns 'not yet implemented' error\n\n**Two approaches:**\n1. Move importIssuesCore to internal/import package (shares with daemon)\n2. Use storage layer directly in daemon (create/update issues via Storage interface)\n\n**Blocker:** \nThis is the critical bug causing data corruption:\n- Agent A pushes changes\n- Agent B does git pull\n- Agent B's daemon serves stale SQLite data\n- Agent B exports stale data back to JSONL, overwriting Agent A's changes\n- Agent B pushes, losing Agent A's work\n\n**Next Steps:**\n1. Choose approach (probably #1 - move importIssuesCore to internal/import)\n2. Implement real importFunc in daemon's checkAndAutoImportIfStale()\n3. Test with two-repo scenario (push from A, pull in B, verify B sees changes)\n4. Ensure no data corruption in multi-agent workflows","status":"in_progress","priority":0,"issue_type":"epic","created_at":"2025-10-25T23:13:12.270766-07:00","updated_at":"2025-10-27T22:22:23.815209-07:00"}
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{"id":"bd-8","title":"Daemon fails to auto-import after git pull updates JSONL","description":"After git pull updates .beads/issues.jsonl, daemon doesn't automatically re-import changes, causing stale data to be shown until next sync cycle (up to 5 minutes).\n\nReproduction:\n1. Repo A: Close issues, export, commit, push\n2. Repo B: git pull (successfully updates .beads/issues.jsonl)\n3. bd show \u003cissue\u003e shows OLD status from daemon's SQLite db\n4. JSONL on disk has correct new status\n\nRoot cause: Daemon sync cycle runs on timer (5min). When user manually runs git pull, daemon doesn't detect JSONL was updated externally and continues serving stale data from SQLite.\n\nImpact:\n- High for AI agents using beads in git workflows\n- Breaks fundamental git-as-source-of-truth model\n- Confusing UX: git log shows commit, bd shows old state\n- Data consistency issues between JSONL and daemon\n\nSee WYVERN_SYNC_ISSUE.md for full analysis.","design":"Three possible solutions:\n\nOption 1: Auto-detect and re-import (recommended)\n- Before serving any bd command, check if .beads/issues.jsonl mtime \u003e last import time\n- If newer, auto-import before processing request\n- Fast check, minimal overhead\n\nOption 2: File watcher in daemon\n- Daemon watches .beads/issues.jsonl for mtime changes\n- Auto-imports when file changes\n- More complex, requires file watching infrastructure\n\nOption 3: Explicit sync command\n- User runs `bd sync` after git pull\n- Manual, error-prone, defeats automation\n\nRecommended: Option 1 (auto-detect) + Option 3 (explicit sync) as fallback.","acceptance_criteria":"1. After git pull updates .beads/issues.jsonl, next bd command sees fresh data\n2. No manual import or daemon restart required\n3. Performance impact \u003c 10ms per command (mtime check is fast)\n4. Works in both daemon and non-daemon modes\n5. Test: Two repo clones, update in one, pull in other, verify immediate sync","notes":"**Current Status (2025-10-26):**\n\n✅ **Completed (bd-128):**\n- Created internal/autoimport package with staleness detection\n- Daemon can detect when JSONL is newer than last import\n- Infrastructure exists to call import logic\n\n❌ **Remaining Work:**\nThe daemon's importFunc in server.go (line 2096-2102) is a stub that just logs a notice. It needs to actually import the issues.\n\n**Problem:** \n- importIssuesCore is in cmd/bd package, not accessible from internal/rpc\n- daemon's handleImport() returns 'not yet implemented' error\n\n**Two approaches:**\n1. Move importIssuesCore to internal/import package (shares with daemon)\n2. Use storage layer directly in daemon (create/update issues via Storage interface)\n\n**Blocker:** \nThis is the critical bug causing data corruption:\n- Agent A pushes changes\n- Agent B does git pull\n- Agent B's daemon serves stale SQLite data\n- Agent B exports stale data back to JSONL, overwriting Agent A's changes\n- Agent B pushes, losing Agent A's work\n\n**Next Steps:**\n1. Choose approach (probably #1 - move importIssuesCore to internal/import)\n2. Implement real importFunc in daemon's checkAndAutoImportIfStale()\n3. Test with two-repo scenario (push from A, pull in B, verify B sees changes)\n4. Ensure no data corruption in multi-agent workflows","status":"in_progress","priority":0,"issue_type":"epic","created_at":"2025-10-25T23:13:12.270766-07:00","updated_at":"2025-10-27T22:22:23.815209-07:00"}
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Reference in New Issue
Block a user