fix(export): populate export_hashes after successful export (GH#1278) (#1286)

Child issues created with --parent were missing from export_hashes table,
which affects integrity tracking and future incremental export features.

This fix ensures SetExportHash() is called for all exported issues:
- Updated ExportResult to include IssueContentHashes map
- Updated finalizeExport() to call SetExportHash() for each exported issue
- Updated exportToJSONLDeferred() to collect content hashes during export
- Updated performIncrementalExport() to collect content hashes for dirty issues
- Updated exportToJSONLWithStore() to call SetExportHash() after export
- Updated daemon's handleExport() to call SetExportHash() after export

Added test TestExportPopulatesExportHashes to verify the fix works for
both regular and hierarchical (child) issue IDs.

Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>

cmd/bd/daemon_sync.go

@@ -138,6 +138,17 @@ func exportToJSONLWithStore(ctx context.Context, store storage.Storage, jsonlPat
 		return writeErr
 	}
 
+	// Update export_hashes for all exported issues (GH#1278)
+	// This ensures child issues created with --parent are properly registered
+	for _, issue := range issues {
+		if issue.ContentHash != "" {
+			if err := store.SetExportHash(ctx, issue.ID, issue.ContentHash); err != nil {
+				// Non-fatal warning - continue with other issues
+				fmt.Fprintf(os.Stderr, "Warning: failed to set export hash for %s: %v\n", issue.ID, err)
+			}
+		}
+	}
+
 	return nil
 }
 

cmd/bd/jsonl_integrity_test.go

@@ -265,3 +265,96 @@ func TestImportClearsExportHashes(t *testing.T) {
 		t.Fatalf("expected export hash to be cleared after import, got %q", hash)
 	}
 }
+
+// TestExportPopulatesExportHashes tests that export populates export_hashes (GH#1278)
+// This ensures child issues created with --parent are properly registered after export.
+func TestExportPopulatesExportHashes(t *testing.T) {
+	// Create temp directory
+	tmpDir := t.TempDir()
+	dbPath := filepath.Join(tmpDir, ".beads", "beads.db")
+	jsonlPath := filepath.Join(tmpDir, ".beads", "issues.jsonl")
+
+	// Ensure .beads directory exists
+	if err := os.MkdirAll(filepath.Dir(dbPath), 0755); err != nil {
+		t.Fatalf("failed to create .beads directory: %v", err)
+	}
+
+	// Create database
+	testStore, err := sqlite.New(context.Background(), dbPath)
+	if err != nil {
+		t.Fatalf("failed to create database: %v", err)
+	}
+	defer testStore.Close()
+
+	ctx := context.Background()
+
+	// Initialize database with prefix
+	if err := testStore.SetConfig(ctx, "issue_prefix", "bd"); err != nil {
+		t.Fatalf("failed to set issue prefix: %v", err)
+	}
+
+	// Create test issues including one with a hierarchical ID (child issue)
+	parentIssue := &types.Issue{
+		ID:          "bd-parent",
+		Title:       "Parent epic",
+		Description: "Parent issue",
+		Status:      types.StatusOpen,
+		Priority:    1,
+		IssueType:   types.TypeEpic,
+	}
+	if err := testStore.CreateIssue(ctx, parentIssue, testActor); err != nil {
+		t.Fatalf("failed to create parent issue: %v", err)
+	}
+
+	childIssue := &types.Issue{
+		ID:          "bd-parent.1",
+		Title:       "Child task",
+		Description: "Child issue with hierarchical ID",
+		Status:      types.StatusOpen,
+		Priority:    2,
+		IssueType:   types.TypeTask,
+	}
+	if err := testStore.CreateIssue(ctx, childIssue, testActor); err != nil {
+		t.Fatalf("failed to create child issue: %v", err)
+	}
+
+	// Verify export_hashes is empty before export
+	hash, err := testStore.GetExportHash(ctx, "bd-parent.1")
+	if err != nil {
+		t.Fatalf("failed to get export hash before export: %v", err)
+	}
+	if hash != "" {
+		t.Fatalf("expected no export hash before export, got %q", hash)
+	}
+
+	// Export to JSONL using the store-based function
+	if err := exportToJSONLWithStore(ctx, testStore, jsonlPath); err != nil {
+		t.Fatalf("export failed: %v", err)
+	}
+
+	// Verify export_hashes is now populated for both issues
+	parentHash, err := testStore.GetExportHash(ctx, "bd-parent")
+	if err != nil {
+		t.Fatalf("failed to get parent export hash after export: %v", err)
+	}
+	if parentHash == "" {
+		t.Errorf("expected parent export hash to be populated after export")
+	}
+
+	childHash, err := testStore.GetExportHash(ctx, "bd-parent.1")
+	if err != nil {
+		t.Fatalf("failed to get child export hash after export: %v", err)
+	}
+	if childHash == "" {
+		t.Errorf("expected child export hash to be populated after export (GH#1278 fix)")
+	}
+
+	// Verify the hashes match the content hashes
+	if parentHash != parentIssue.ContentHash && parentHash != "" {
+		// ContentHash might be computed differently, just verify it's not empty
+		t.Logf("parent export hash: %s, content hash: %s", parentHash, parentIssue.ContentHash)
+	}
+	if childHash != childIssue.ContentHash && childHash != "" {
+		t.Logf("child export hash: %s, content hash: %s", childHash, childIssue.ContentHash)
+	}
+}

cmd/bd/sync_export.go

@@ -43,6 +43,10 @@ type ExportResult struct {
 
 	// ExportTime is when the export was performed (RFC3339Nano format)
 	ExportTime string
+
+	// IssueContentHashes maps issue IDs to their content hashes (GH#1278)
+	// Used to populate export_hashes table after successful export
+	IssueContentHashes map[string]string
 }
 
 // finalizeExport updates SQLite metadata after a successful git commit.
@@ -69,6 +73,18 @@ func finalizeExport(ctx context.Context, result *ExportResult) {
 		}
 	}
 
+	// Update export_hashes for all exported issues (GH#1278)
+	// This ensures child issues created with --parent are properly registered
+	// for integrity tracking and incremental export detection.
+	if len(result.IssueContentHashes) > 0 {
+		for issueID, contentHash := range result.IssueContentHashes {
+			if err := store.SetExportHash(ctx, issueID, contentHash); err != nil {
+				// Non-fatal warning - continue with other issues
+				fmt.Fprintf(os.Stderr, "Warning: failed to set export hash for %s: %v\n", issueID, err)
+			}
+		}
+	}
+
 	// Clear auto-flush state
 	clearAutoFlushState()
 
@@ -233,14 +249,19 @@ func exportToJSONLDeferred(ctx context.Context, jsonlPath string) (*ExportResult
 		_ = os.Remove(tempPath)
 	}()
 
-	// Write JSONL
+	// Write JSONL and collect content hashes (GH#1278)
 	encoder := json.NewEncoder(tempFile)
 	exportedIDs := make([]string, 0, len(issues))
+	issueContentHashes := make(map[string]string, len(issues))
 	for _, issue := range issues {
 		if err := encoder.Encode(issue); err != nil {
 			return nil, fmt.Errorf("failed to encode issue %s: %w", issue.ID, err)
 		}
 		exportedIDs = append(exportedIDs, issue.ID)
+		// Collect content hash for export_hashes table
+		if issue.ContentHash != "" {
+			issueContentHashes[issue.ID] = issue.ContentHash
+		}
 	}
 
 	// Close temp file before rename (error checked implicitly by Rename success)
@@ -266,6 +287,7 @@ func exportToJSONLDeferred(ctx context.Context, jsonlPath string) (*ExportResult
 		ExportedIDs:        exportedIDs,
 		ContentHash:        contentHash,
 		ExportTime:         exportTime,
+		IssueContentHashes: issueContentHashes,
 	}, nil
 }
 
@@ -366,8 +388,10 @@ func performIncrementalExport(ctx context.Context, jsonlPath string, dirtyIDs []
 	}
 
 	// Query dirty issues from database and track which IDs were found
+	// Also collect content hashes for export_hashes table (GH#1278)
 	dirtyIssues := make([]*types.Issue, 0, len(dirtyIDs))
 	issueByID := make(map[string]*types.Issue, len(dirtyIDs))
+	issueContentHashes := make(map[string]string, len(dirtyIDs))
 	for _, id := range dirtyIDs {
 		issue, err := store.GetIssue(ctx, id)
 		if err != nil {
@@ -376,6 +400,9 @@ func performIncrementalExport(ctx context.Context, jsonlPath string, dirtyIDs []
 		issueByID[id] = issue // Store result (may be nil for deleted issues)
 		if issue != nil {
 			dirtyIssues = append(dirtyIssues, issue)
+			if issue.ContentHash != "" {
+				issueContentHashes[issue.ID] = issue.ContentHash
+			}
 		}
 	}
 
@@ -506,6 +533,7 @@ func performIncrementalExport(ctx context.Context, jsonlPath string, dirtyIDs []
 		ExportedIDs:        dirtyIDs, // Only clear dirty flags for actually dirty issues
 		ContentHash:        contentHash,
 		ExportTime:         exportTime,
+		IssueContentHashes: issueContentHashes,
 	}, nil
 }
 

internal/rpc/server_export_import_auto.go

@@ -205,6 +205,17 @@ func (s *Server) handleExport(req *Request) Response {
 		fmt.Fprintf(os.Stderr, "Warning: failed to clear dirty flags: %v\n", err)
 	}
 
+	// Update export_hashes for all exported issues (GH#1278)
+	// This ensures child issues created with --parent are properly registered
+	for _, issue := range issues {
+		if issue.ContentHash != "" {
+			if err := store.SetExportHash(ctx, issue.ID, issue.ContentHash); err != nil {
+				// Non-fatal, just log
+				fmt.Fprintf(os.Stderr, "Warning: failed to set export hash for %s: %v\n", issue.ID, err)
+			}
+		}
+	}
+
 	// Write manifest if configured
 	if manifest != nil {
 		manifest.ExportedCount = len(exportedIDs)