From a8ec1d6483c5be64950ee1d9b2301cb79a9861cb Mon Sep 17 00:00:00 2001 From: Steve Yegge Date: Thu, 25 Dec 2025 01:21:15 -0800 Subject: [PATCH] bd sync: 2025-12-25 01:21:15 --- .beads/issues.jsonl | 172 ++++++++++++++++++++++---------------------- 1 file changed, 86 insertions(+), 86 deletions(-) diff --git a/.beads/issues.jsonl b/.beads/issues.jsonl index f4551ba8..291ce80e 100644 --- a/.beads/issues.jsonl +++ b/.beads/issues.jsonl @@ -1,20 +1,20 @@ {"id":"bd-00u3","title":"Deprecate bd mol run after gt absorbs its semantics","description":"bd mol run is a convenience combo (pour + update + pin) that feels like orchestration but lives in the data layer. This blurs the bd/gt architectural boundary.\n\n## Current State\n- bd mol run = bd pour + bd update --status=in_progress + bd pin --for me\n- gt spawn depends on bd mol run (shells out to it)\n\n## Proposed Change\nOnce gt spawn inlines the pour+assign+pin logic:\n1. Deprecate bd mol run with a warning pointing to gt spawn\n2. Eventually remove bd mol run entirely\n\n## Why\n- bd should be pure data operations (pour, update, pin, close)\n- gt should own orchestration (spawn, sling, hook, handoff)\n- Standalone bd users can run the three commands separately or script them\n\n## Blocked By\ngastown issue gt-r7jj2 (Move mol run semantics from bd into gt spawn)","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-25T00:59:03.667211-08:00","updated_at":"2025-12-25T01:04:51.755145-08:00","closed_at":"2025-12-25T01:04:51.755145-08:00","close_reason":"Removed bd mol run - gt will implement the orchestration combo"} {"id":"bd-05a8","title":"Split large cmd/bd files: doctor.go (2948 lines), sync.go (2121 lines)","description":"Code health review found several oversized files:\n\n1. doctor.go - 2948 lines, 48 functions mixed together\n - Should split into doctor/checks/*.go for individual diagnostics\n - applyFixes() and previewFixes() are nearly identical\n\n2. sync.go - 2121 lines\n - ZFC (Zero Flush Check) logic embedded inline (lines 213-247)\n - Multiple mode handlers should be extracted\n\n3. init.go - 1732 lines\n4. compact.go - 1097 lines\n5. show.go - 1069 lines\n\nRecommendation: Extract into focused sub-packages or split into logical files.","status":"closed","priority":2,"issue_type":"task","assignee":"beads/lima","created_at":"2025-12-16T18:17:18.169927-08:00","updated_at":"2025-12-23T23:58:24.591999-08:00","closed_at":"2025-12-23T23:58:24.591999-08:00","close_reason":"Already completed - doctor.go and sync.go refactored in previous sessions"} -{"id":"bd-06px","title":"bd sync --from-main fails: unknown flag --no-git-history","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-17T14:32:02.998106-08:00","updated_at":"2025-12-17T23:13:40.531756-08:00","closed_at":"2025-12-17T17:21:48.506039-08:00"} +{"id":"bd-06px","title":"bd sync --from-main fails: unknown flag --no-git-history","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-17T14:32:02.998106-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-077e","title":"Add close_reason field to CLI schema and documentation","description":"PR #551 persists close_reason, but the CLI documentation may not mention this field as part of the issue schema.\n\n## Current State\n- close_reason is now persisted in database\n- `bd show --json` will return close_reason in JSON output\n- Documentation may not reflect this new field\n\n## What's Missing\n- CLI reference documentation for close_reason field\n- Schema documentation showing close_reason is a top-level issue field\n- Example output showing close_reason in bd show --json\n- bd close command documentation should mention close_reason parameter is optional\n\n## Suggested Action\n1. Update README.md or CLI reference docs to list close_reason as an issue field\n2. Add example to bd close documentation\n3. Update any type definitions or schema specs\n4. Consider adding close_reason to verbose list output (bd list --verbose)","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-14T14:25:28.448654-08:00","updated_at":"2025-12-14T14:25:28.448654-08:00","dependencies":[{"issue_id":"bd-077e","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:28.449968-08:00","created_by":"stevey","metadata":"{}"}]} -{"id":"bd-0a43","title":"Split monolithic sqlite.go into focused files","description":"internal/storage/sqlite/sqlite.go is 1050 lines containing initialization, 20+ CRUD methods, query building, and schema management.\n\nSplit into:\n- store.go: Store struct \u0026 initialization (150 lines)\n- bead_queries.go: Bead CRUD (300 lines)\n- work_queries.go: Work queries (200 lines) \n- stats_queries.go: Statistics (150 lines)\n- schema.go: Schema \u0026 migrations (150 lines)\n- helpers.go: Common utilities (100 lines)\n\nImpact: Impossible to understand at a glance; hard to find specific functionality; high cognitive load\n\nEffort: 6-8 hours","status":"closed","priority":0,"issue_type":"task","created_at":"2025-11-16T14:51:16.520465-08:00","updated_at":"2025-12-17T23:13:40.533947-08:00","closed_at":"2025-12-17T16:51:30.236012-08:00"} -{"id":"bd-0d5p","title":"Fix TestRunSync_Timeout failing on macOS","description":"The hooks timeout test fails because exec.CommandContext doesn't properly terminate child processes of shell scripts on macOS. The test creates a hook that runs 'sleep 60' with a 500ms timeout, but it waits the full 60 seconds.\n\nOptions to fix:\n- Use SysProcAttr{Setpgid: true} to create process group and kill the group\n- Skip test on darwin with build tag\n- Use a different approach for timeout testing\n\nLocation: internal/hooks/hooks_test.go:220-253","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T20:52:51.771217-08:00","updated_at":"2025-12-17T23:13:40.532688-08:00","closed_at":"2025-12-17T17:23:55.678799-08:00"} +{"id":"bd-0a43","title":"Split monolithic sqlite.go into focused files","description":"internal/storage/sqlite/sqlite.go is 1050 lines containing initialization, 20+ CRUD methods, query building, and schema management.\n\nSplit into:\n- store.go: Store struct \u0026 initialization (150 lines)\n- bead_queries.go: Bead CRUD (300 lines)\n- work_queries.go: Work queries (200 lines) \n- stats_queries.go: Statistics (150 lines)\n- schema.go: Schema \u0026 migrations (150 lines)\n- helpers.go: Common utilities (100 lines)\n\nImpact: Impossible to understand at a glance; hard to find specific functionality; high cognitive load\n\nEffort: 6-8 hours","status":"tombstone","priority":0,"issue_type":"task","created_at":"2025-11-16T14:51:16.520465-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-0d5p","title":"Fix TestRunSync_Timeout failing on macOS","description":"The hooks timeout test fails because exec.CommandContext doesn't properly terminate child processes of shell scripts on macOS. The test creates a hook that runs 'sleep 60' with a 500ms timeout, but it waits the full 60 seconds.\n\nOptions to fix:\n- Use SysProcAttr{Setpgid: true} to create process group and kill the group\n- Skip test on darwin with build tag\n- Use a different approach for timeout testing\n\nLocation: internal/hooks/hooks_test.go:220-253","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T20:52:51.771217-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-0fvq","title":"bd doctor should recommend bd prime migration for existing repos","description":"bd doctor should detect old beads integration patterns and recommend migrating to bd prime approach.\n\n## Current behavior\n- bd doctor checks if Claude hooks are installed globally\n- Doesn't check project-level integration (AGENTS.md, CLAUDE.md)\n- Doesn't recommend migration for repos using old patterns\n\n## Desired behavior\nbd doctor should detect and suggest:\n\n1. **Old slash command pattern detected**\n - Check for /beads:* references in AGENTS.md, CLAUDE.md\n - Suggest: These slash commands are deprecated, use bd prime hooks instead\n \n2. **No agent documentation**\n - Check if AGENTS.md or CLAUDE.md exists\n - Suggest: Run 'bd onboard' or 'bd setup claude' to document workflow\n \n3. **Old MCP-only pattern**\n - Check for instructions to use MCP tools but no bd prime hooks\n - Suggest: Add bd prime hooks for better token efficiency\n\n4. **Migration path**\n - Show: 'Run bd setup claude to add SessionStart/PreCompact hooks'\n - Show: 'Update AGENTS.md to reference bd prime instead of slash commands'\n\n## Example output\n\nāš  Warning: Old beads integration detected in CLAUDE.md\n Found: /beads:* slash command references (deprecated)\n Recommend: Migrate to bd prime hooks for better token efficiency\n Fix: Run 'bd setup claude' and update CLAUDE.md\n\nšŸ’” Tip: bd prime + hooks reduces token usage by 80-99% vs slash commands\n MCP mode: ~50 tokens vs ~10.5k for full MCP scan\n CLI mode: ~1-2k tokens with automatic context recovery\n\n## Benefits\n- Helps existing repos adopt new best practices\n- Clear migration path for users\n- Better token efficiency messaging","status":"closed","priority":2,"issue_type":"feature","assignee":"beads/mike","created_at":"2025-11-12T03:20:25.567748-08:00","updated_at":"2025-12-23T22:33:23.931274-08:00","closed_at":"2025-12-23T22:33:23.931274-08:00","close_reason":"Already implemented in commit f0132683 (Enhance bd doctor with bd prime migration recommendations)"} {"id":"bd-0j5y","title":"Merge: bd-05a8","description":"branch: polecat/valkyrie\ntarget: main\nsource_issue: bd-05a8\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-23T20:50:27.125378-08:00","updated_at":"2025-12-23T21:21:57.69697-08:00","closed_at":"2025-12-23T21:21:57.69697-08:00","close_reason":"stale - no code pushed"} {"id":"bd-0kai","title":"Work on beads-ocs: Thin shim hooks to eliminate version d...","description":"Work on beads-ocs: Thin shim hooks to eliminate version drift (GH#615). Replace full hook scripts with thin shims that call bd hooks run. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:57:22.91347-08:00","updated_at":"2025-12-20T00:49:51.926425-08:00","closed_at":"2025-12-19T23:24:08.828172-08:00","close_reason":"Implemented thin shim hooks to eliminate version drift (beads-ocs)"} {"id":"bd-0oqz","title":"Add GetMoleculeProgress RPC endpoint","description":"New RPC endpoint to get detailed progress for a specific molecule. Returns: moleculeID, title, assignee, and list of steps with their status (done/current/ready/blocked), start/close times. Used when user expands a worker in the activity feed TUI.","status":"closed","priority":2,"issue_type":"feature","assignee":"beads/furiosa","created_at":"2025-12-23T16:26:38.137866-08:00","updated_at":"2025-12-23T18:27:49.033335-08:00","closed_at":"2025-12-23T18:27:49.033335-08:00","close_reason":"Implemented GetMoleculeProgress RPC endpoint"} {"id":"bd-0vg","title":"Pinned issues: persistent context markers","description":"Add ability to pin issues so they remain visible and are excluded from work-finding commands. Pinned issues serve as persistent context markers (handoffs, architectural notes, recovery instructions) that should not be claimed as work items.\n\nUse Cases:\n1. Handoff messages - Pin session handoffs so new agents always see them\n2. Architecture decisions - Pin ADRs or design notes for reference \n3. Recovery context - Pin amnesia-cure notes that help agents orient\n\nCore commands: bd pin, bd unpin, bd list --pinned/--no-pinned","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-18T23:33:10.911092-08:00","updated_at":"2025-12-21T11:30:28.989696-08:00","closed_at":"2025-12-21T11:30:28.989696-08:00","close_reason":"All children complete - pinned issues feature fully implemented"} -{"id":"bd-0w5","title":"Fix update-hooks verification in version-bump.yaml","description":"The update-hooks task verification command at version-bump.yaml:358 always succeeds due to '|| echo ...' fallback. Remove the fallback so verification actually fails when hooks aren't installed.","status":"closed","priority":3,"issue_type":"bug","created_at":"2025-12-17T22:23:06.55467-08:00","updated_at":"2025-12-17T22:34:07.290409-08:00","closed_at":"2025-12-17T22:34:07.290409-08:00"} -{"id":"bd-0zp7","title":"Add missing hook calls in mail reply and ack","description":"The mail commands are missing hook calls:\n\n1. runMailReply (mail.go:525-672) creates a message but doesn't call hookRunner.Run(hooks.EventMessage, ...) after creating the reply in direct mode (around line 640)\n\n2. runMailAck (mail.go:432-523) closes messages but doesn't call hookRunner.Run(hooks.EventClose, ...) after closing each message (around line 487 for daemon mode, 493 for direct mode)\n\nThis means GGT hooks won't fire for replies or message acknowledgments.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T20:52:53.069412-08:00","updated_at":"2025-12-17T23:13:40.532054-08:00","closed_at":"2025-12-17T17:22:59.368024-08:00"} +{"id":"bd-0w5","title":"Fix update-hooks verification in version-bump.yaml","description":"The update-hooks task verification command at version-bump.yaml:358 always succeeds due to '|| echo ...' fallback. Remove the fallback so verification actually fails when hooks aren't installed.","status":"tombstone","priority":3,"issue_type":"bug","created_at":"2025-12-17T22:23:06.55467-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-0zp7","title":"Add missing hook calls in mail reply and ack","description":"The mail commands are missing hook calls:\n\n1. runMailReply (mail.go:525-672) creates a message but doesn't call hookRunner.Run(hooks.EventMessage, ...) after creating the reply in direct mode (around line 640)\n\n2. runMailAck (mail.go:432-523) closes messages but doesn't call hookRunner.Run(hooks.EventClose, ...) after closing each message (around line 487 for daemon mode, 493 for direct mode)\n\nThis means GGT hooks won't fire for replies or message acknowledgments.","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T20:52:53.069412-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-14ie","title":"Work on beads-2vn: Add simple built-in beads viewer (GH#6...","description":"Work on beads-2vn: Add simple built-in beads viewer (GH#654). Add bd list --pretty with --watch flag, tree view with priority/status symbols. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:47.305831-08:00","updated_at":"2025-12-19T23:28:32.429492-08:00","closed_at":"2025-12-19T23:23:13.928323-08:00","close_reason":"Implemented --pretty flag with tree view and symbols. Tests pass."} {"id":"bd-14v0","title":"Add Windows code signing for bd.exe releases","description":"## Context\n\nGo binaries (including bd.exe) are commonly flagged by antivirus software as false positives due to heuristic detection. See docs/ANTIVIRUS.md for full details.\n\n## Problem\n\nKaspersky and other AV software flag bd.exe as PDM:Trojan.Win32.Generic, causing it to be quarantined or deleted.\n\n## Solution\n\nImplement code signing for Windows releases using:\n1. An EV (Extended Validation) code certificate\n2. Integration with GoReleaser to sign Windows binaries during release\n\n## Benefits\n\n- Reduces false positive rates over time as the certificate builds reputation\n- Provides tamper verification for users\n- Improves SmartScreen trust rating on Windows\n- Professional appearance for enterprise users\n\n## Implementation Steps\n\n1. Acquire EV code signing certificate (annual cost ~$300-500)\n2. Set up signtool or osslsigncode in release pipeline\n3. Update .goreleaser.yml to sign Windows binaries\n4. Update checksums to include signed binary hashes\n5. Document signing verification in ANTIVIRUS.md\n\n## References\n\n- docs/ANTIVIRUS.md - Current documentation\n- bd-t4u1 - Original Kaspersky false positive report\n- https://github.com/golang/go/issues/16292 - Go project discussion","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-23T23:46:48.459177-08:00","updated_at":"2025-12-23T23:54:41.912141-08:00","closed_at":"2025-12-23T23:54:41.912141-08:00","close_reason":"Implemented Windows code signing infrastructure. Added signing script, GoReleaser hook, updated release workflow and documentation. Signing is gracefully degraded when certificate secrets are not configured - releases continue as unsigned. Certificate acquisition (EV cert) is still required to actually enable signing.","dependencies":[{"issue_id":"bd-14v0","depends_on_id":"bd-t4u1","type":"discovered-from","created_at":"2025-12-23T23:47:02.024159-08:00","created_by":"daemon"}]} {"id":"bd-1slh","title":"Investigate charmbracelet-based TUI for beads","description":"Now that we've merged the create-form command (PR #603) which uses charmbracelet/huh, investigate whether beads should have a more comprehensive TUI.\n\nConsiderations:\n- Should this be in core or a separate binary (bd-tui)?\n- What functionality would benefit from a TUI? (list view, issue details, search, bulk operations)\n- Plugin/extension architecture vs build tags vs separate binary\n- Dependency cost vs user experience tradeoff\n- Target audience: humans who want interactive workflows vs CLI/scripting users\n\nRelated: PR #603 added charmbracelet/huh dependency for create-form command.","notes":"Foundation is in place (lipgloss, huh), but not a priority right now","status":"deferred","priority":3,"issue_type":"feature","created_at":"2025-12-17T14:20:51.503563-08:00","updated_at":"2025-12-20T23:31:34.354023-08:00"} -{"id":"bd-1tw","title":"Fix G104 errors unhandled in internal/storage/sqlite/queries.go:1186","description":"Linting issue: G104: Errors unhandled (gosec) at internal/storage/sqlite/queries.go:1186:2. Error: rows.Close()","status":"closed","priority":0,"issue_type":"bug","created_at":"2025-12-07T15:35:13.051671889-07:00","updated_at":"2025-12-17T23:13:40.53486-08:00","closed_at":"2025-12-17T16:46:11.0289-08:00"} +{"id":"bd-1tw","title":"Fix G104 errors unhandled in internal/storage/sqlite/queries.go:1186","description":"Linting issue: G104: Errors unhandled (gosec) at internal/storage/sqlite/queries.go:1186:2. Error: rows.Close()","status":"tombstone","priority":0,"issue_type":"bug","created_at":"2025-12-07T15:35:13.051671889-07:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-20j","title":"sync branch not match config","description":"./bd sync\nā†’ Exporting pending changes to JSONL...\nā†’ No changes to commit\nā†’ Pulling from sync branch 'gh-386'...\nError pulling from sync branch: failed to create worktree: failed to create worktree parent directory: mkdir /var/home/matt/dev/beads/worktree-db-fail/.git: not a directory\nmatt@blufin-framation ~/d/b/worktree-db-fail (worktree-db-fail) [1]\u003e bd config list\n\nConfiguration:\n auto_compact_enabled = false\n compact_batch_size = 50\n compact_model = claude-3-5-haiku-20241022\n compact_parallel_workers = 5\n compact_tier1_days = 30\n compact_tier1_dep_levels = 2\n compact_tier2_commits = 100\n compact_tier2_days = 90\n compact_tier2_dep_levels = 5\n compaction_enabled = false\n issue_prefix = worktree-db-fail\n sync.branch = worktree-db-fail","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-08T06:49:04.449094018-07:00","updated_at":"2025-12-08T06:49:04.449094018-07:00"} {"id":"bd-28db","title":"Add 'bd status' command for issue database overview","description":"Implement a bd status command that provides a quick snapshot of the issue database state, similar to how git status shows working tree state.\n\nExpected output: Show summary including counts by state (open, in-progress, blocked, closed), recent activity (last 7 days), and quick overview without needing multiple queries.\n\nExample output showing issue counts, recent activity stats, and pointer to bd list for details.\n\nProposed options: --all (show all issues), --assigned (show issues assigned to current user), --json (JSON format output)\n\nUse cases: Quick project health check, onboarding for new contributors, integration with shell prompts or CI/CD, daily standup reference","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-11-02T17:25:59.203549-08:00","updated_at":"2025-12-21T17:54:00.205191-08:00","closed_at":"2025-12-21T17:54:00.205191-08:00","close_reason":"Already implemented - bd status shows summary and activity"} {"id":"bd-29fb","title":"Implement bd close --continue flag","description":"Auto-advance to next step in molecule when closing an issue. Referenced by gt-um6q, gt-lz13. Needed for molecule navigation workflow.","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-12-23T00:17:55.032875-08:00","updated_at":"2025-12-23T01:26:47.255313-08:00","closed_at":"2025-12-23T01:26:47.255313-08:00","close_reason":"Already implemented: --continue flag auto-advances to next step in molecule, --no-auto prevents auto-claiming"} @@ -25,7 +25,7 @@ {"id":"bd-2oo.2","title":"Remove redundant edge fields from Issue struct","description":"Remove from Issue struct:\n- RepliesTo -\u003e dependency with type replies-to\n- RelatesTo -\u003e dependencies with type relates-to \n- DuplicateOf -\u003e dependency with type duplicates\n- SupersededBy -\u003e dependency with type supersedes\n\nKeep: Sender, Ephemeral (these are attributes, not relationships)","status":"closed","priority":0,"issue_type":"task","created_at":"2025-12-18T02:02:00.891206-08:00","updated_at":"2025-12-18T02:49:10.584381-08:00","closed_at":"2025-12-18T02:49:10.584381-08:00","close_reason":"Phase 4 complete: all edge fields removed, dependencies API used exclusively","dependencies":[{"issue_id":"bd-2oo.2","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:00.891655-08:00","created_by":"daemon","metadata":"{}"}]} {"id":"bd-2oo.3","title":"Update all code to use dependencies API for edges","description":"Find and update all code that reads/writes:\n- replies_to field -\u003e use dependency API\n- relates_to field -\u003e use dependency API\n- duplicate_of field -\u003e use dependency API\n- superseded_by field -\u003e use dependency API\n\nCommands affected: bd mail, bd relate, bd duplicate, bd supersede, bd show, etc.","status":"closed","priority":0,"issue_type":"task","created_at":"2025-12-18T02:02:01.317006-08:00","updated_at":"2025-12-18T02:49:10.59233-08:00","closed_at":"2025-12-18T02:49:10.59233-08:00","close_reason":"Phase 4 complete: all edge fields removed, dependencies API used exclusively","dependencies":[{"issue_id":"bd-2oo.3","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:01.31856-08:00","created_by":"daemon","metadata":"{}"}]} {"id":"bd-2oo.4","title":"Create migration script for edge field to dependency conversion","description":"Migration must:\n1. Read existing JSONL with old fields\n2. Convert field values to dependency records\n3. Write updated JSONL without old fields\n4. Handle edge cases (missing refs, duplicates)\n\nRun via: bd migrate or automatic on bd prime","status":"closed","priority":0,"issue_type":"task","created_at":"2025-12-18T02:02:01.760277-08:00","updated_at":"2025-12-18T02:49:10.602446-08:00","closed_at":"2025-12-18T02:49:10.602446-08:00","close_reason":"Phase 4 complete: all edge fields removed, dependencies API used exclusively","dependencies":[{"issue_id":"bd-2oo.4","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:01.760694-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-2q6d","title":"Beads commands operate on stale database without warning","description":"All beads read operations should validate database is in sync with JSONL before proceeding.\n\n**Current Behavior:**\n- Commands can query/read from stale database\n- Only mutation operations (like 'bd sync') check if JSONL is newer\n- User gets incorrect results without realizing database is out of sync\n\n**Expected Behavior:**\n- All beads commands should have pre-flight check for database freshness\n- If JSONL is newer than database, refuse to operate with error: \"Database out of sync. Run 'bd import' first.\"\n- Same safety check that exists for 'bd sync' should apply to ALL operations\n\n**Impact:**\n- Users make decisions based on incomplete/outdated data\n- Silent failures lead to confusion (e.g., thinking issues don't exist when they do)\n- Similar to running git commands on stale repo without being warned to pull\n\n**Example:**\n- Searched for bd-g9eu issue file: not found\n- Issue exists in .beads/issues.jsonl (in git)\n- Database was stale, but no warning was given\n- Led to incorrect conclusion that issue was already closed/deleted","notes":"## Implementation Complete\n\n**Phase 1: Created staleness check (cmd/bd/staleness.go)**\n- ensureDatabaseFresh() function checks JSONL mtime vs last_import_time\n- Returns error with helpful message when database is stale\n- Auto-skips in daemon mode (daemon has auto-import)\n\n**Phase 2: Added to all read commands**\n- list, show, ready, status, stale, info, duplicates, validate\n- Check runs before database queries in direct mode\n- Daemon mode already protected via checkAndAutoImportIfStale()\n\n**Phase 3: Code Review Findings**\nSee follow-up issues:\n- bd-XXXX: Add warning when staleness check errors\n- bd-YYYY: Improve CheckStaleness error handling\n- bd-ZZZZ: Refactor redundant daemon checks (low priority)\n\n**Testing:**\n- Build successful: go build ./cmd/bd\n- Binary works: ./bd --version\n- Ready for manual testing\n\n**Next Steps:**\n1. Test with stale database scenario\n2. Implement review improvements\n3. Close issue when tests pass","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-20T19:33:40.019297-05:00","updated_at":"2025-12-17T23:13:40.535149-08:00","closed_at":"2025-12-17T19:11:12.982639-08:00"} +{"id":"bd-2q6d","title":"Beads commands operate on stale database without warning","description":"All beads read operations should validate database is in sync with JSONL before proceeding.\n\n**Current Behavior:**\n- Commands can query/read from stale database\n- Only mutation operations (like 'bd sync') check if JSONL is newer\n- User gets incorrect results without realizing database is out of sync\n\n**Expected Behavior:**\n- All beads commands should have pre-flight check for database freshness\n- If JSONL is newer than database, refuse to operate with error: \"Database out of sync. Run 'bd import' first.\"\n- Same safety check that exists for 'bd sync' should apply to ALL operations\n\n**Impact:**\n- Users make decisions based on incomplete/outdated data\n- Silent failures lead to confusion (e.g., thinking issues don't exist when they do)\n- Similar to running git commands on stale repo without being warned to pull\n\n**Example:**\n- Searched for bd-g9eu issue file: not found\n- Issue exists in .beads/issues.jsonl (in git)\n- Database was stale, but no warning was given\n- Led to incorrect conclusion that issue was already closed/deleted","notes":"## Implementation Complete\n\n**Phase 1: Created staleness check (cmd/bd/staleness.go)**\n- ensureDatabaseFresh() function checks JSONL mtime vs last_import_time\n- Returns error with helpful message when database is stale\n- Auto-skips in daemon mode (daemon has auto-import)\n\n**Phase 2: Added to all read commands**\n- list, show, ready, status, stale, info, duplicates, validate\n- Check runs before database queries in direct mode\n- Daemon mode already protected via checkAndAutoImportIfStale()\n\n**Phase 3: Code Review Findings**\nSee follow-up issues:\n- bd-XXXX: Add warning when staleness check errors\n- bd-YYYY: Improve CheckStaleness error handling\n- bd-ZZZZ: Refactor redundant daemon checks (low priority)\n\n**Testing:**\n- Build successful: go build ./cmd/bd\n- Binary works: ./bd --version\n- Ready for manual testing\n\n**Next Steps:**\n1. Test with stale database scenario\n2. Implement review improvements\n3. Close issue when tests pass","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-11-20T19:33:40.019297-05:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-2v0f","title":"Add gate issue type to beads","description":"Add 'gate' as a new issue type for async coordination.\n\n## Changes Needed\n- Add 'gate' to IssueType enum in internal/types/types.go\n- Update validation to accept gate type\n- Update CLI help text and completion\n\n## Gate Type Semantics\n- Gates are ephemeral (live in wisp storage)\n- Managed by Deacon patrol\n- Have special fields: await_type, await_id, timeout, waiters[]","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-23T11:44:31.331897-08:00","updated_at":"2025-12-23T11:47:06.287781-08:00","closed_at":"2025-12-23T11:47:06.287781-08:00","close_reason":"Added TypeGate constant and IsValid() validation. Updated CLI help text in create.go, list.go, show.go, search.go, count.go, export.go.","dependencies":[{"issue_id":"bd-2v0f","depends_on_id":"bd-udsi","type":"parent-child","created_at":"2025-12-23T11:44:52.659005-08:00","created_by":"daemon"}]} {"id":"bd-2vh3","title":"Ephemeral issue cleanup and history compaction","description":"## Problem\n\nBeads history grows without bound. Every message, handoff, work assignment\nstays in issues.jsonl forever. Enterprise users will balk at \"git as database.\"\n\n## Solution: Two-Tier Cleanup\n\n### Tier 1: Ephemeral Cleanup (v1)\n\nbd cleanup --ephemeral --closed\n\n- Deletes closed issues where ephemeral=true from issues.jsonl\n- Safe: only removes explicitly marked ephemeral + closed\n- Preserves git history (commits still exist)\n- Run after swarm completion\n\n### Tier 2: History Compaction (v2)\n\nbd compact --squash\n\n- Rewrites issues.jsonl to remove tombstones\n- Optionally squashes git history (interactive rebase equivalent)\n- Preserves Merkle proofs for deleted items\n- Advanced: cold storage tiering\n\n## HOP Context\n\n| Layer | HOP Role | Persistence |\n|-------|----------|-------------|\n| Execution trace | None | Ephemeral |\n| Work scaffolding | None | Summarizable |\n| Work outcome | CV entry | Permanent |\n| Validation record | Stake proof | Permanent |\n\n\"Execution is ephemeral. Outcomes are permanent. You can't squash your CV.\"\n\n## Success Criteria\n\n- After cleanup --ephemeral: issues.jsonl only contains persistent work\n- Work outcomes preserved (CV entries)\n- Validation records preserved (stake proofs)\n- Execution scaffolding removed (transient coordination)","notes":"## Implementation Plan (REVISED after code review)\n\nSee history/EPHEMERAL_MOLECULES_DESIGN.md for comprehensive design + review.\n\n## Key Simplification\n\nAfter code review, Tier 1 is MUCH simpler than originally designed:\n\n- **Original**: Separate ephemeral repo with routing.ephemeral config\n- **Revised**: Just set Wisp: true in cloneSubgraph()\n\nThe wisp field and bd cleanup --wisp already exist\\!\n\n## Child Tasks (in dependency order)\n\n1. **bd-2vh3.2**: Tier 1 - Ephemeral spawning (SIMPLIFIED) [READY]\n - Just add Wisp: true to template.go:474\n - Add --persistent flag to opt out\n2. **bd-2vh3.3**: Tier 2 - Basic bd mol squash command\n3. **bd-2vh3.4**: Tier 3 - AI-powered squash summarization\n4. **bd-2vh3.5**: Tier 4 - Auto-squash on molecule completion\n5. **bd-2vh3.6**: Tier 5 - JSONL archive rotation (DEFERRED: post-1.0)\n\n## What Already Exists\n\n| Component | Location |\n|-----------|----------|\n| Ephemeral field | internal/types/types.go:45 |\n| bd cleanup --wisp | cmd/bd/cleanup.go:72 |\n| cloneSubgraph() | cmd/bd/template.go:456 |\n| loadTemplateSubgraph() | cmd/bd/template.go |\n\n## HOP Alignment\n\n'Execution is ephemeral. Outcomes are permanent. You can't squash your CV.'","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-12-20T21:02:20.101367-08:00","updated_at":"2025-12-21T17:50:02.958155-08:00","closed_at":"2025-12-21T17:50:02.958155-08:00","close_reason":"Core feature complete: bd cleanup --wisp works, molecules marked as wisps. bd-2vh3.6 (archive rotation) deferred post-1.0."} {"id":"bd-2vh3.1","title":"Tier 1: Ephemeral repo routing","description":"Add routing.ephemeral config option to route ephemeral=true issues to separate location.\n\n## Changes Required\n\n1. Add `routing.ephemeral` config option (default: empty = disabled)\n2. Update routing logic in `determineRepo()` to check ephemeral flag\n3. Update `bd create` to respect ephemeral routing\n4. Update import/export for multi-location support\n5. Ephemeral repo can be:\n - Separate git repo (~/.beads-ephemeral)\n - Non-git directory (just filesystem)\n - Same repo, different branch (future)\n\n## Config\n\n```bash\nbd config set routing.ephemeral \"~/.beads-ephemeral\"\n```\n\n## Acceptance Criteria\n\n- `bd create \"test\" --ephemeral` creates in ephemeral repo when configured\n- `bd list` shows issues from both repos\n- Ephemeral repo never synced to remote","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-21T12:57:26.648052-08:00","updated_at":"2025-12-21T12:59:01.815357-08:00","deleted_at":"2025-12-21T12:59:01.815357-08:00","deleted_by":"stevey","delete_reason":"manual delete","original_type":"task"} @@ -50,10 +50,10 @@ {"id":"bd-401h","title":"Work on beads-7jl: Fix Windows installer file locking iss...","description":"Work on beads-7jl: Fix Windows installer file locking issue (GH#652). Close file handle before extraction in postinstall.js. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","assignee":"beads/rictus","created_at":"2025-12-19T22:55:57.873767-08:00","updated_at":"2025-12-19T23:20:05.747664-08:00","closed_at":"2025-12-19T23:20:05.747664-08:00","close_reason":"Fixed file handle closure race condition in postinstall.js"} {"id":"bd-411u","title":"Document BEADS_DIR pattern for multi-agent workspaces (Gas Town)","description":"Gas Town and similar multi-agent systems need to configure separate beads databases per workspace/rig, distinct from any project-level beads.\n\n## Use Case\n\nIn Gas Town:\n- Each 'rig' (managed project) has multiple agents (polecats, refinery, witness)\n- All agents in a rig should share a single beads database at the rig level\n- This should be separate from any .beads/ the project itself uses\n- The BEADS_DIR env var enables this\n\n## Documentation Needed\n\n1. Add a section to docs explaining BEADS_DIR for multi-agent setups\n2. Example: setting BEADS_DIR in agent startup scripts/hooks\n3. Clarify interaction with project-level .beads/ (BEADS_DIR takes precedence)\n\n## Current Support\n\nAlready implemented in internal/beads/beads.go:FindDatabasePath():\n- BEADS_DIR env var is checked first (preferred)\n- BEADS_DB env var still supported (deprecated)\n- Falls back to .beads/ search in tree\n\nJust needs documentation for the multi-agent workspace pattern.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-15T22:08:22.158027-08:00","updated_at":"2025-12-15T22:08:22.158027-08:00"} {"id":"bd-47qx","title":"bd cook: Proto ID prefix should match project prefix","description":"When `bd cook` creates a proto, it uses the formula name as the proto ID:\n\n```yaml\nformula: mol-deacon-patrol\n```\n\nCreates proto with ID `mol-deacon-patrol`.\n\n## Problem\n\nIf the project uses a different prefix (e.g., `gt-`), the cooked protos have \na different prefix (`mol-`), causing:\n\n1. `bd sync` import warnings about prefix mismatch\n2. Mixed prefix lists in `bd mol list`\n3. Confusion about naming conventions\n\n## Options\n\n1. **Use project prefix**: Cook as `gt-mol-deacon-patrol`\n2. **Allow mol- as special prefix**: Recognize mol-* as valid for protos\n3. **Make prefix configurable**: `bd cook --prefix gt-`\n4. **Keep current behavior**: Document that formulas use their own namespace\n\n## Current Workaround\n\nThe prefix mismatch warning can be ignored, but `bd sync` fails the import step.\n\n## Related\n\ngt-i6k1: Duplicate proto cleanup","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-24T13:50:24.631336-08:00","updated_at":"2025-12-24T13:59:09.933374-08:00","closed_at":"2025-12-24T13:59:09.933374-08:00","close_reason":"Fixed in this session"} -{"id":"bd-47tn","title":"Add bd daemon --stop-all command to kill all daemon processes","description":"Currently there's no easy way to stop all running bd daemon processes. Users must resort to pkill -f 'bd daemon' or similar shell commands.\n\nAdd a --stop-all flag to bd daemon that:\n1. Finds all running bd daemon processes (not just the current repo's daemon)\n2. Gracefully stops them all\n3. Reports how many were stopped\n\nThis is useful when:\n- Multiple daemons are running and causing race conditions\n- User wants a clean slate before running bd sync\n- Debugging daemon-related issues","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-13T06:34:45.080633-08:00","updated_at":"2025-12-16T01:14:49.501989-08:00","closed_at":"2025-12-14T17:33:03.057089-08:00"} +{"id":"bd-47tn","title":"Add bd daemon --stop-all command to kill all daemon processes","description":"Currently there's no easy way to stop all running bd daemon processes. Users must resort to pkill -f 'bd daemon' or similar shell commands.\n\nAdd a --stop-all flag to bd daemon that:\n1. Finds all running bd daemon processes (not just the current repo's daemon)\n2. Gracefully stops them all\n3. Reports how many were stopped\n\nThis is useful when:\n- Multiple daemons are running and causing race conditions\n- User wants a clean slate before running bd sync\n- Debugging daemon-related issues","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-13T06:34:45.080633-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} {"id":"bd-49kw","title":"Workaround for FastMCP outputSchema bug in Claude Code","description":"The beads MCP server (v0.23.1) successfully connects to Claude Code, but all tools fail to load with a schema validation error due to a bug in FastMCP 2.13.1.\n\nError: \"Invalid literal value, expected \\\"object\\\"\" in outputSchema.\n\nRoot Cause: FastMCP generates outputSchema with $ref at root level without \"type\": \"object\" for self-referential models (Issue).\n\nWorkaround: Use slash commands (/beads:ready) or wait for FastMCP fix.\n","status":"closed","priority":1,"issue_type":"bug","assignee":"beads/toast","created_at":"2025-11-20T18:55:39.041831-05:00","updated_at":"2025-12-23T23:49:44.371623-08:00","closed_at":"2025-12-23T23:49:44.371623-08:00","close_reason":"Added output_schema=None workaround to 8 MCP tools (ready, list, show, create, update, close, reopen, blocked)"} {"id":"bd-4bsb","title":"Code review findings: mol squash deletion bypasses tombstones","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-21T13:57:14.154316-08:00","updated_at":"2025-12-21T18:01:06.811216-08:00","closed_at":"2025-12-21T18:01:06.811216-08:00","close_reason":"Won't fix: Wisps are ephemeral by design. They're local-only, never synced to other clones, so tombstones are unnecessary overhead. Hard delete is intentional.","dependencies":[{"issue_id":"bd-4bsb","depends_on_id":"bd-2vh3.3","type":"discovered-from","created_at":"2025-12-21T13:57:14.155488-08:00","created_by":"daemon"}]} -{"id":"bd-4ec8","title":"Widespread double JSON encoding bug in daemon mode RPC calls","description":"Multiple CLI commands had the same double JSON encoding bug found in bd-1048. All commands that called ResolveID via RPC used string(resp.Data) instead of properly unmarshaling the JSON response. This caused IDs to retain JSON quotes (\"bd-1048\" instead of bd-1048), which then got double-encoded when passed to subsequent RPC calls.\n\nAffected commands:\n- bd show (3 instances)\n- bd dep add/remove/tree (5 instances)\n- bd label add/remove/list (3 instances)\n- bd reopen (1 instance)\n\nRoot cause: resp.Data is json.RawMessage (already JSON-encoded), so string() conversion preserves quotes.\n\nFix: Replace all string(resp.Data) with json.Unmarshal(resp.Data, \u0026id) for proper deserialization.\n\nAll commands now tested and working correctly with daemon mode.","status":"closed","priority":0,"issue_type":"bug","created_at":"2025-11-02T22:33:01.632691-08:00","updated_at":"2025-12-17T23:13:40.533631-08:00","closed_at":"2025-12-17T16:26:05.851197-08:00"} +{"id":"bd-4ec8","title":"Widespread double JSON encoding bug in daemon mode RPC calls","description":"Multiple CLI commands had the same double JSON encoding bug found in bd-1048. All commands that called ResolveID via RPC used string(resp.Data) instead of properly unmarshaling the JSON response. This caused IDs to retain JSON quotes (\"bd-1048\" instead of bd-1048), which then got double-encoded when passed to subsequent RPC calls.\n\nAffected commands:\n- bd show (3 instances)\n- bd dep add/remove/tree (5 instances)\n- bd label add/remove/list (3 instances)\n- bd reopen (1 instance)\n\nRoot cause: resp.Data is json.RawMessage (already JSON-encoded), so string() conversion preserves quotes.\n\nFix: Replace all string(resp.Data) with json.Unmarshal(resp.Data, \u0026id) for proper deserialization.\n\nAll commands now tested and working correctly with daemon mode.","status":"tombstone","priority":0,"issue_type":"bug","created_at":"2025-11-02T22:33:01.632691-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-4hn","title":"wish: list \u0026 ready show issues as hierarchy tree","description":"`bd ready` and `bd list` just show a flat list, and it's up to the reader to parse which ones are dependent or sub-issues of others. It would be much easier to understand if they were shown in a tree format","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-08T06:38:24.016316945-07:00","updated_at":"2025-12-08T06:39:04.065882225-07:00"} {"id":"bd-4lm3","title":"Correction: Pinned field already in v0.31.0","description":"Quick correction - the Pinned field is already in the current bd v0.31.0:\n\n```go\n// In beads internal/types/types.go\nPinned bool `json:\"pinned,omitempty\"`\n```\n\nSo you just need to:\n1. Add `Pinned bool `json:\"pinned,omitempty\"`` to BeadsMessage in types.go\n2. Sort pinned messages first in listBeads() after fetching\n\nNo migration needed - the field is already there.\n\n-- Mayor","status":"closed","priority":2,"issue_type":"message","assignee":"gastown/crew/max","created_at":"2025-12-20T17:52:27.321458-08:00","updated_at":"2025-12-21T17:52:18.617995-08:00","closed_at":"2025-12-21T17:52:18.617995-08:00","close_reason":"Stale correction message","labels":["from:beads-crew-dave","thread:thread-4dd70157dbc1"]} {"id":"bd-4nqq","title":"Remove dead test code in info_test.go","description":"Code health review found cmd/bd/info_test.go has two tests permanently skipped:\n\n- TestInfoCommand\n- TestInfoCommandNoDaemon\n\nBoth skip with: 'Manual test - bd info command is working, see manual testing'\n\nThese are essentially dead code. Either automate them or remove them entirely.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:27.554019-08:00","updated_at":"2025-12-22T21:01:24.524963-08:00","closed_at":"2025-12-22T21:01:24.524963-08:00","close_reason":"Removed 2 permanently skipped tests (TestInfoCommand, TestInfoWithNoDaemon). Kept 3 useful tests for versionChanges."} @@ -62,17 +62,17 @@ {"id":"bd-4p3k","title":"Release v0.34.0","description":"Minor version release for beads v0.34.0. This bead serves as my persistent work assignment; the actual release steps are tracked in an attached wisp.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-22T03:03:20.73092-08:00","updated_at":"2025-12-22T03:05:03.168622-08:00","deleted_at":"2025-12-22T03:05:03.168622-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} {"id":"bd-4q8","title":"bd cleanup --hard should skip tombstone creation for true permanent deletion","description":"## Problem\n\nWhen using bd cleanup --hard --older-than N --force, the command:\n1. Deletes closed issues older than N days (converting them to tombstones with NOW timestamp)\n2. Then tries to prune tombstones older than N days (finds none because they were just created)\n\nThis leaves the database bloated with fresh tombstones that will not be pruned.\n\n## Expected Behavior\n\nIn --hard mode, the deletion should be permanent without creating tombstones, since the user explicitly requested bypassing sync safety.\n\n## Workaround\n\nManually delete from database: sqlite3 .beads/beads.db 'DELETE FROM issues WHERE status=tombstone'\n\n## Fix Options\n\n1. In --hard mode, use a different delete path that does not create tombstones\n2. After deleting, immediately prune the just-created tombstones regardless of age\n3. Pass a skip_tombstone flag to the delete operation\n\nOption 1 is cleanest - --hard should mean permanent delete without tombstone.","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T01:33:36.580657-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-4qfb","title":"Improve bd doctor output formatting for better readability","description":"Improve bd doctor output formatting for better readability.\n\n## Current State\nDoctor output is a wall of text with:\n- All checks shown (even passing ones)\n- No visual hierarchy\n- Hard to spot failures in long output\n\n## Target Output\n\n```\n$ bd doctor\n\nbd doctor v0.35.0\n\nSummary: 24 checks passed, 1 warning, 0 errors\n\nā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€\nāš  Warnings (1)\nā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€\n\n[hooks] Git hooks outdated\n Current version: 0.34.0\n Latest version: 0.35.0\n Fix: bd hooks install\n\nā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€\nāœ“ Passed (24) [use --verbose to show details]\nā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€\n```\n\nWith --verbose:\n```\n$ bd doctor --verbose\n\nbd doctor v0.35.0\n\nSummary: 24 checks passed, 1 warning, 0 errors\n\nā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€\nāš  Warnings (1)\nā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€\n\n[hooks] Git hooks outdated\n ...\n\nā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€\nāœ“ Passed (24)\nā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€\n\n Database\n āœ“ Database exists\n āœ“ Database readable\n āœ“ Schema up to date\n \n Git Hooks\n āœ“ Pre-commit hook installed\n āœ“ Post-merge hook installed\n āš  Hooks version mismatch (see above)\n \n Sync\n āœ“ Sync branch configured\n āœ“ Remote accessible\n ...\n```\n\n## Implementation\n\n### 1. Add check categories (cmd/bd/doctor/categories.go)\n\n```go\ntype Category string\n\nconst (\n CatDatabase Category = \"Database\"\n CatHooks Category = \"Git Hooks\"\n CatSync Category = \"Sync\"\n CatDaemon Category = \"Daemon\"\n CatConfig Category = \"Configuration\"\n CatIntegrity Category = \"Data Integrity\"\n)\n\n// Assign categories to checks\nvar checkCategories = map[string]Category{\n \"database-exists\": CatDatabase,\n \"database-readable\": CatDatabase,\n \"schema-version\": CatDatabase,\n \"pre-commit-hook\": CatHooks,\n \"post-merge-hook\": CatHooks,\n \"hooks-version\": CatHooks,\n \"sync-branch\": CatSync,\n \"remote-access\": CatSync,\n // ... etc\n}\n```\n\n### 2. Add --verbose flag\n\n```go\n// In cmd/bd/doctor.go init()\ndoctorCmd.Flags().BoolP(\"verbose\", \"v\", false, \"Show all checks including passed\")\n```\n\n### 3. Create formatter (cmd/bd/doctor/format.go)\n\n```go\ntype Formatter struct {\n verbose bool\n noColor bool\n}\n\nfunc (f *Formatter) Format(results []CheckResult) string {\n var buf strings.Builder\n \n // Count by status\n passed, warnings, errors := countByStatus(results)\n \n // Header\n buf.WriteString(fmt.Sprintf(\"bd doctor v%s\\n\\n\", version.Version))\n buf.WriteString(fmt.Sprintf(\"Summary: %d passed, %d warnings, %d errors\\n\\n\", \n passed, warnings, errors))\n \n // Errors section (always show)\n if errors \u003e 0 {\n f.writeSection(\u0026buf, \"āœ— Errors\", filterByStatus(results, StatusError))\n }\n \n // Warnings section (always show)\n if warnings \u003e 0 {\n f.writeSection(\u0026buf, \"āš  Warnings\", filterByStatus(results, StatusWarning))\n }\n \n // Passed section (only with --verbose)\n if f.verbose \u0026\u0026 passed \u003e 0 {\n f.writePassedSection(\u0026buf, filterByStatus(results, StatusPassed))\n } else if passed \u003e 0 {\n buf.WriteString(fmt.Sprintf(\"āœ“ Passed (%d) [use --verbose to show details]\\n\", passed))\n }\n \n return buf.String()\n}\n\nfunc (f *Formatter) writeSection(buf *strings.Builder, title string, results []CheckResult) {\n buf.WriteString(\"ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€\\n\")\n buf.WriteString(title + \"\\n\")\n buf.WriteString(\"ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€\\n\\n\")\n \n for _, r := range results {\n buf.WriteString(fmt.Sprintf(\"[%s] %s\\n\", r.CheckName, r.Message))\n if r.Details != \"\" {\n buf.WriteString(fmt.Sprintf(\" %s\\n\", r.Details))\n }\n if r.Fix != \"\" {\n buf.WriteString(fmt.Sprintf(\" Fix: %s\\n\", r.Fix))\n }\n buf.WriteString(\"\\n\")\n }\n}\n\nfunc (f *Formatter) writePassedSection(buf *strings.Builder, results []CheckResult) {\n // Group by category\n byCategory := groupByCategory(results)\n \n buf.WriteString(\"ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€\\n\")\n buf.WriteString(fmt.Sprintf(\"āœ“ Passed (%d)\\n\", len(results)))\n buf.WriteString(\"ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€\\n\\n\")\n \n for _, cat := range categoryOrder {\n if checks, ok := byCategory[cat]; ok {\n buf.WriteString(fmt.Sprintf(\" %s\\n\", cat))\n for _, r := range checks {\n buf.WriteString(fmt.Sprintf(\" āœ“ %s\\n\", r.Message))\n }\n buf.WriteString(\"\\n\")\n }\n }\n}\n```\n\n### 4. Update run function\n\n```go\nfunc runDoctor(cmd *cobra.Command, args []string) {\n verbose, _ := cmd.Flags().GetBool(\"verbose\")\n noColor, _ := cmd.Flags().GetBool(\"no-color\")\n \n results := runAllChecks()\n \n formatter := \u0026Formatter{verbose: verbose, noColor: noColor}\n fmt.Print(formatter.Format(results))\n \n // Exit code based on results\n if hasErrors(results) {\n os.Exit(1)\n }\n}\n```\n\n## Files to Modify\n\n1. **cmd/bd/doctor.go** - Add --verbose flag, update run function\n2. **cmd/bd/doctor/format.go** - New file for formatting logic\n3. **cmd/bd/doctor/categories.go** - New file for check categorization\n4. **cmd/bd/doctor/common.go** - Add Status field to CheckResult if missing\n\n## Testing\n\n```bash\n# Default output (concise)\nbd doctor\n\n# Verbose output\nbd doctor --verbose\n\n# JSON output (should still work)\nbd doctor --json\n```\n\n## Success Criteria\n- Summary line at top with counts\n- Only failures/warnings shown by default\n- --verbose shows grouped passed checks\n- Visual separators between sections\n- Exit code 1 if errors, 0 otherwise","status":"closed","priority":2,"issue_type":"task","assignee":"beads/Polish","created_at":"2025-12-13T09:29:27.557578+11:00","updated_at":"2025-12-23T13:37:18.48781-08:00","closed_at":"2025-12-23T13:37:18.48781-08:00","close_reason":"Implemented: summary at top, --verbose flag, collapsed passed checks","dependencies":[{"issue_id":"bd-4qfb","depends_on_id":"bd-iz5t","type":"parent-child","created_at":"2025-12-23T12:44:07.972517-08:00","created_by":"daemon"}]} -{"id":"bd-4ri","title":"Fix TestFallbackToDirectModeEnablesFlush deadlock causing 10min test timeout","description":"## Problem\n\nTestFallbackToDirectModeEnablesFlush in direct_mode_test.go deadlocks for 9m59s before timing out, causing the entire test suite to take 10+ minutes instead of \u003c10 seconds.\n\n## Root Cause\n\nDatabase lock contention between test cleanup and flushToJSONL():\n- Test cleanup (line 36) tries to close DB via defer\n- flushToJSONL() (line 132) is still accessing DB\n- Results in deadlock: database/sql.(*DB).Close() waits for mutex while GetJSONLFileHash() holds it\n\n## Stack Trace Evidence\n\n```\ngoroutine 512 [sync.Mutex.Lock, 9 minutes]:\ndatabase/sql.(*DB).Close(0x14000643790)\n .../database/sql/sql.go:927 +0x84\ngithub.com/steveyegge/beads/cmd/bd.TestFallbackToDirectModeEnablesFlush.func1()\n .../direct_mode_test.go:36 +0xf4\n\nWhile goroutine running flushToJSONL() holds DB connection via GetJSONLFileHash()\n```\n\n## Impact\n\n- Test suite: 10+ minutes ā†’ should be \u003c10 seconds\n- ALL other tests pass in ~4 seconds\n- This ONE test accounts for 99.9% of test runtime\n\n## Related\n\nThis is the EXACT same issue documented in MAIN_TEST_REFACTOR_NOTES.md for why main_test.go refactoring was deferred - global state manipulation + DB cleanup = deadlock.\n\n## Fix Approaches\n\n1. **Add proper cleanup sequencing** - stop flush goroutines BEFORE closing DB\n2. **Use test-specific DB lifecycle** - ensure flush completes before cleanup\n3. **Mock the flush mechanism** - avoid real DB for testing this code path \n4. **Add explicit timeout handling** - fail fast with clear error instead of hanging\n\n## Files\n\n- cmd/bd/direct_mode_test.go:36-132\n- cmd/bd/autoflush.go:353 (validateJSONLIntegrity)\n- cmd/bd/autoflush.go:508 (flushToJSONLWithState)\n\n## Acceptance\n\n- Test passes without timeout\n- Test suite completes in \u003c10 seconds\n- No deadlock between cleanup and flush operations","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-21T20:09:00.794372-05:00","updated_at":"2025-12-17T23:13:40.533279-08:00","closed_at":"2025-12-17T17:25:07.626617-08:00"} +{"id":"bd-4ri","title":"Fix TestFallbackToDirectModeEnablesFlush deadlock causing 10min test timeout","description":"## Problem\n\nTestFallbackToDirectModeEnablesFlush in direct_mode_test.go deadlocks for 9m59s before timing out, causing the entire test suite to take 10+ minutes instead of \u003c10 seconds.\n\n## Root Cause\n\nDatabase lock contention between test cleanup and flushToJSONL():\n- Test cleanup (line 36) tries to close DB via defer\n- flushToJSONL() (line 132) is still accessing DB\n- Results in deadlock: database/sql.(*DB).Close() waits for mutex while GetJSONLFileHash() holds it\n\n## Stack Trace Evidence\n\n```\ngoroutine 512 [sync.Mutex.Lock, 9 minutes]:\ndatabase/sql.(*DB).Close(0x14000643790)\n .../database/sql/sql.go:927 +0x84\ngithub.com/steveyegge/beads/cmd/bd.TestFallbackToDirectModeEnablesFlush.func1()\n .../direct_mode_test.go:36 +0xf4\n\nWhile goroutine running flushToJSONL() holds DB connection via GetJSONLFileHash()\n```\n\n## Impact\n\n- Test suite: 10+ minutes ā†’ should be \u003c10 seconds\n- ALL other tests pass in ~4 seconds\n- This ONE test accounts for 99.9% of test runtime\n\n## Related\n\nThis is the EXACT same issue documented in MAIN_TEST_REFACTOR_NOTES.md for why main_test.go refactoring was deferred - global state manipulation + DB cleanup = deadlock.\n\n## Fix Approaches\n\n1. **Add proper cleanup sequencing** - stop flush goroutines BEFORE closing DB\n2. **Use test-specific DB lifecycle** - ensure flush completes before cleanup\n3. **Mock the flush mechanism** - avoid real DB for testing this code path \n4. **Add explicit timeout handling** - fail fast with clear error instead of hanging\n\n## Files\n\n- cmd/bd/direct_mode_test.go:36-132\n- cmd/bd/autoflush.go:353 (validateJSONLIntegrity)\n- cmd/bd/autoflush.go:508 (flushToJSONLWithState)\n\n## Acceptance\n\n- Test passes without timeout\n- Test suite completes in \u003c10 seconds\n- No deadlock between cleanup and flush operations","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-11-21T20:09:00.794372-05:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-4sfl","title":"Merge: bd-14ie","description":"branch: polecat/toast\ntarget: main\nsource_issue: bd-14ie\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:23:37.360782-08:00","updated_at":"2025-12-20T23:17:26.997276-08:00","closed_at":"2025-12-20T23:17:26.997276-08:00","close_reason":"Branches nuked, MRs obsolete"} {"id":"bd-4uoc","title":"Code Review Followup Summary: PR #481 + PR #551","description":"## Merged PRs Summary\n\n### PR #551: Persist close_reason to issues table\n- āœ… Merged successfully\n- āœ… Bug fix: close_reason now persisted in database column (not just events table)\n- āœ… Comprehensive test coverage added\n- āœ… Handles reopen case (clearing close_reason)\n\n**Followup Issues Filed:**\n- bd-lxzx: Document close_reason in JSONL export format\n- bd-077e: Update CLI documentation for close_reason field\n\n---\n\n### PR #481: Context Engineering Optimizations (80-90% context reduction)\n- āœ… Merged successfully \n- āœ… Lazy tool discovery: discover_tools() + get_tool_info()\n- āœ… Minimal issue models: IssueMinimal (~80% smaller than full Issue)\n- āœ… Result compaction: Auto-compacts results \u003e20 items\n- āœ… All 28 tests passing\n- āš ļø Breaking change: ready() and list() return type changed\n\n**Followup Issues Filed:**\n- bd-b318: Add integration tests for CompactedResult\n- bd-4u2b: Make compaction settings configurable (THRESHOLD, PREVIEW_COUNT)\n- bd-2kf8: Document CompactedResult response format in CONTEXT_ENGINEERING.md\n- bd-pdr2: Document backwards compatibility considerations\n\n---\n\n## Overall Assessment\n\nBoth PRs are production-ready with solid implementations. All critical functionality works and tests pass. Followup issues focus on:\n1. Documentation improvements (5 issues)\n2. Integration test coverage (1 issue)\n3. Configuration flexibility (1 issue)\n4. Backwards compatibility guidance (1 issue)\n\nNo critical bugs or design issues found.\n\n## Review Completed By\nCode review process completed. Issues auto-created for tracking improvements.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:59.214886-08:00","updated_at":"2025-12-14T14:25:59.214886-08:00","dependencies":[{"issue_id":"bd-4uoc","depends_on_id":"bd-otf4","type":"discovered-from","created_at":"2025-12-14T14:25:59.216884-08:00","created_by":"stevey","metadata":"{}"},{"issue_id":"bd-4uoc","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:59.217296-08:00","created_by":"stevey","metadata":"{}"}]} {"id":"bd-4y4g","title":"Bump version in all files","description":"Run ./scripts/bump-version.sh {{version}} to update 10 version files. Then run with --commit after info.go is updated.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:01.859728-08:00","updated_at":"2025-12-24T16:25:30.160776-08:00","dependencies":[{"issue_id":"bd-4y4g","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.623724-08:00","created_by":"daemon"},{"issue_id":"bd-4y4g","depends_on_id":"bd-8v2","type":"blocks","created_at":"2025-12-18T22:43:20.823329-08:00","created_by":"daemon"}],"deleted_at":"2025-12-24T16:25:30.160776-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-56x","title":"Review PR #514: fix plugin install docs","description":"Review and merge PR #514 from aspiers. This PR fixes incorrect docs for installing Claude Code plugin from source in docs/PLUGIN.md. Clarifies shell vs Claude Code commands and fixes the . vs ./beads argument issue. URL: https://github.com/anthropics/beads/pull/514","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:15:16.865354+11:00","updated_at":"2025-12-13T07:07:19.729213-08:00","closed_at":"2025-12-13T07:07:19.729213-08:00"} -{"id":"bd-581b80b3","title":"bd find-duplicates - AI-powered duplicate detection","description":"Find semantically duplicate issues.\n\nApproaches:\n1. Mechanical: Exact title/description matching\n2. Embeddings: Cosine similarity (cheap, scalable)\n3. AI: LLM-based semantic comparison (expensive, accurate)\n\nUses embeddings by default for \u003e100 issues.\n\nFiles: cmd/bd/find_duplicates.go (new)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-10-29T20:49:49.126801-07:00","updated_at":"2025-12-17T22:58:34.563511-08:00","closed_at":"2025-12-17T22:58:34.563511-08:00","close_reason":"Closed"} +{"id":"bd-56x","title":"Review PR #514: fix plugin install docs","description":"Review and merge PR #514 from aspiers. This PR fixes incorrect docs for installing Claude Code plugin from source in docs/PLUGIN.md. Clarifies shell vs Claude Code commands and fixes the . vs ./beads argument issue. URL: https://github.com/anthropics/beads/pull/514","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-13T08:15:16.865354+11:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-581b80b3","title":"bd find-duplicates - AI-powered duplicate detection","description":"Find semantically duplicate issues.\n\nApproaches:\n1. Mechanical: Exact title/description matching\n2. Embeddings: Cosine similarity (cheap, scalable)\n3. AI: LLM-based semantic comparison (expensive, accurate)\n\nUses embeddings by default for \u003e100 issues.\n\nFiles: cmd/bd/find_duplicates.go (new)","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-29T20:49:49.126801-07:00","updated_at":"2025-12-25T01:21:01.952723-08:00","close_reason":"Closed","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-589x","title":"HANDOFF: Version 0.30.7 release in progress","description":"## Context\nDoing a 0.30.7 patch release with bug fixes.\n\n## What's done\n- Fixed #657: bd graph nil pointer crash (graph.go:102)\n- Fixed #652: Windows npm installer file lock (postinstall.js)\n- Updated CHANGELOG.md and info.go\n- Pushed to main, CI running (run 20390861825)\n- Created version-bump molecule template (bd-6s61) and instantiated for 0.30.7 (bd-8pyn)\n\n## In progress\nMolecule bd-8pyn has 3 remaining tasks:\n - bd-dxo7: Wait for CI to pass\n - bd-7l70: Verify release artifacts \n - bd-5c91: Update local installation\n\n## Check CI\n gh run list --repo steveyegge/beads --limit 1\n gh run view 20390861825 --repo steveyegge/beads\n\n## New feature filed\nbd-n777: Timer beads for scheduled agent callbacks\nDesign for Deacon-managed timers that can interrupt agents via tmux\n\n## Resume commands\n bd --no-daemon show bd-8pyn\n gh run list --repo steveyegge/beads --limit 1","status":"closed","priority":2,"issue_type":"message","assignee":"beads/dave","created_at":"2025-12-19T23:06:14.902334-08:00","updated_at":"2025-12-20T00:49:51.927111-08:00","closed_at":"2025-12-20T00:25:59.596546-08:00"} {"id":"bd-5b6e","title":"Add tests for helper functions (GetDirtyIssueHash, GetAllDependencyRecords, export hashes)","description":"Several utility functions have 0% coverage:\n- GetDirtyIssueHash (dirty.go)\n- GetAllDependencyRecords (dependencies.go)\n- GetExportHash, SetExportHash, ClearAllExportHashes (hash.go)\n\nThese are lower priority but should have basic coverage.","status":"open","priority":4,"issue_type":"task","created_at":"2025-11-01T22:40:58.989976-07:00","updated_at":"2025-11-01T22:40:58.989976-07:00"} {"id":"bd-5exm","title":"Merge: bd-49kw","description":"branch: polecat/nux\ntarget: main\nsource_issue: bd-49kw\nrig: beads","status":"closed","priority":1,"issue_type":"merge-request","created_at":"2025-12-23T20:43:23.156375-08:00","updated_at":"2025-12-23T21:21:57.693169-08:00","closed_at":"2025-12-23T21:21:57.693169-08:00","close_reason":"stale - no code pushed"} {"id":"bd-5hrq","title":"bd doctor: detect issues referenced in commits but still open","description":"Add a doctor check that finds 'orphaned' issues - ones referenced in git commit messages (e.g., 'fix bug (bd-xxx)') but still marked as open in beads.\n\n**Detection logic:**\n1. Get all open issue IDs from beads\n2. Parse git log for issue ID references matching pattern \\(prefix-[a-z0-9.]+\\)\n3. Report issues that appear in commits but are still open\n\n**Output:**\nāš  Warning: N issues referenced in commits but still open\n bd-xxx: 'Issue title' (commit abc123)\n bd-yyy: 'Issue title' (commit def456)\n \n These may be implemented but not closed. Run 'bd show \u003cid\u003e' to check.\n\n**Implementation:**\n- Add check to doctor/checks.go\n- Use git log parsing (already have git utilities)\n- Match against configured issue_prefix","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-12-21T21:48:08.473165-08:00","updated_at":"2025-12-21T21:55:37.795109-08:00","closed_at":"2025-12-21T21:55:37.795109-08:00","close_reason":"Implemented CheckOrphanedIssues in git.go with 8 test cases. Detects issues referenced in commits (e.g., 'fix bug (bd-xxx)') that are still open. Shows warning with issue IDs and commit hashes."} -{"id":"bd-5qim","title":"Optimize GetReadyWork performance - 752ms on 10K database (target: \u003c50ms)","notes":"# Performance Analysis (10K Issue Database)\n\nAnalyzed using CPU profiles from benchmark suite on Apple M2 Pro.\n\n## Operation Performance\n\n| Operation | Time | Allocations | Memory |\n|----------------------------------|---------|-------------|--------|\n| bd ready (GetReadyWork) | ~752ms | 167,466 | 16MB |\n| bd list (SearchIssues no filter) | ~11.6ms | 89,214 | 5.8MB |\n| bd list (SearchIssues filtered) | ~9.2ms | 62,365 | 3.5MB |\n| bd create (CreateIssue) | ~2.6ms | 146 | 8.6KB |\n| bd update (UpdateIssue) | ~0.32ms | 364 | 15KB |\n| bd close (UpdateIssue) | ~0.32ms | 364 | 15KB |\n\n**Target: \u003c50ms for all operations on 10K database**\n\n**Current issue: GetReadyWork is 15x over target (752ms vs 50ms)**\n\n## Root Cause\n\nGetReadyWork (internal/storage/sqlite/ready.go:90-128) uses recursive CTE to propagate blocking:\n- 65x slower than SearchIssues\n- Recalculates entire blocked issue tree on every call\n- Algorithm:\n 1. Find directly blocked issues via 'blocks' dependencies\n 2. Recursively propagate blockage to descendants (max depth: 50)\n 3. Exclude all blocked issues from results\n\n## CPU Profile Analysis\n\n- Database syscalls (pthread_cond_signal, syscall6): ~75%\n- SQLite engine overhead: inherent to recursive CTE\n- Application code (query construction): \u003c1%\n\n**Bottleneck is the recursive CTE query execution, not application code.**\n\n## Optimization Recommendations\n\n### High Impact (Likely to achieve \u003c50ms target)\n\n1. **Cache blocked issue calculation**\n - Add `blocked_issues` table updated on dependency changes\n - Trade write complexity for read speed (ready called \u003e\u003e dependency changes)\n - Eliminates recursive CTE on every read\n\n2. **Add/verify database indexes**\n ```sql\n CREATE INDEX IF NOT EXISTS idx_dependencies_blocked \n ON dependencies(issue_id, type, depends_on_id);\n CREATE INDEX IF NOT EXISTS idx_issues_status \n ON issues(status);\n ```\n\n### Medium Impact\n\n3. **Reduce allocations** (167K allocations for GetReadyWork)\n - Profile `scanIssues()` for object pooling opportunities\n - Reuse slice capacity for repeated calls\n\n### Low Impact (Not recommended)\n- Query optimization for CRUD operations (already \u003c3ms)\n- Connection pooling tuning (not showing in profiles)\n\n## Verification\n\nRun benchmarks to validate optimization:\n```bash\nmake bench-quick\ngo tool pprof -http=:8080 internal/storage/sqlite/bench-cpu-*.prof\n```\n\nProfile files automatically generated in `internal/storage/sqlite/`.","status":"closed","priority":0,"issue_type":"bug","created_at":"2025-11-14T09:02:46.507526-08:00","updated_at":"2025-12-17T23:13:40.534258-08:00","closed_at":"2025-12-17T16:21:37.918868-08:00"} +{"id":"bd-5qim","title":"Optimize GetReadyWork performance - 752ms on 10K database (target: \u003c50ms)","notes":"# Performance Analysis (10K Issue Database)\n\nAnalyzed using CPU profiles from benchmark suite on Apple M2 Pro.\n\n## Operation Performance\n\n| Operation | Time | Allocations | Memory |\n|----------------------------------|---------|-------------|--------|\n| bd ready (GetReadyWork) | ~752ms | 167,466 | 16MB |\n| bd list (SearchIssues no filter) | ~11.6ms | 89,214 | 5.8MB |\n| bd list (SearchIssues filtered) | ~9.2ms | 62,365 | 3.5MB |\n| bd create (CreateIssue) | ~2.6ms | 146 | 8.6KB |\n| bd update (UpdateIssue) | ~0.32ms | 364 | 15KB |\n| bd close (UpdateIssue) | ~0.32ms | 364 | 15KB |\n\n**Target: \u003c50ms for all operations on 10K database**\n\n**Current issue: GetReadyWork is 15x over target (752ms vs 50ms)**\n\n## Root Cause\n\nGetReadyWork (internal/storage/sqlite/ready.go:90-128) uses recursive CTE to propagate blocking:\n- 65x slower than SearchIssues\n- Recalculates entire blocked issue tree on every call\n- Algorithm:\n 1. Find directly blocked issues via 'blocks' dependencies\n 2. Recursively propagate blockage to descendants (max depth: 50)\n 3. Exclude all blocked issues from results\n\n## CPU Profile Analysis\n\n- Database syscalls (pthread_cond_signal, syscall6): ~75%\n- SQLite engine overhead: inherent to recursive CTE\n- Application code (query construction): \u003c1%\n\n**Bottleneck is the recursive CTE query execution, not application code.**\n\n## Optimization Recommendations\n\n### High Impact (Likely to achieve \u003c50ms target)\n\n1. **Cache blocked issue calculation**\n - Add `blocked_issues` table updated on dependency changes\n - Trade write complexity for read speed (ready called \u003e\u003e dependency changes)\n - Eliminates recursive CTE on every read\n\n2. **Add/verify database indexes**\n ```sql\n CREATE INDEX IF NOT EXISTS idx_dependencies_blocked \n ON dependencies(issue_id, type, depends_on_id);\n CREATE INDEX IF NOT EXISTS idx_issues_status \n ON issues(status);\n ```\n\n### Medium Impact\n\n3. **Reduce allocations** (167K allocations for GetReadyWork)\n - Profile `scanIssues()` for object pooling opportunities\n - Reuse slice capacity for repeated calls\n\n### Low Impact (Not recommended)\n- Query optimization for CRUD operations (already \u003c3ms)\n- Connection pooling tuning (not showing in profiles)\n\n## Verification\n\nRun benchmarks to validate optimization:\n```bash\nmake bench-quick\ngo tool pprof -http=:8080 internal/storage/sqlite/bench-cpu-*.prof\n```\n\nProfile files automatically generated in `internal/storage/sqlite/`.","status":"tombstone","priority":0,"issue_type":"bug","created_at":"2025-11-14T09:02:46.507526-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-5rj1","title":"Merge: bd-gqxd","description":"branch: polecat/furiosa\ntarget: main\nsource_issue: bd-gqxd\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-23T16:40:21.707706-08:00","updated_at":"2025-12-23T19:12:08.349245-08:00","closed_at":"2025-12-23T19:12:08.349245-08:00","close_reason":"Stale merge-requests from orphaned polecat branches - refinery not processing"} {"id":"bd-5s91","title":"CLI API Audit for OSS Launch","description":"Comprehensive CLI API audit before OSS launch.\n\n## Tasks\n1. Review gt command groupings - propose consolidation\n2. Review bd command groupings \n3. Document gt vs bd ownership boundaries\n4. Identify naming inconsistencies\n5. Document flag vs subcommand criteria\n\n## Context\n- Pre-OSS launch cleanup\n- Goal: clean, consistent, discoverable CLI surface","status":"in_progress","priority":1,"issue_type":"epic","created_at":"2025-12-25T00:15:41.355013-08:00","updated_at":"2025-12-25T00:15:48.352143-08:00"} {"id":"bd-66l4","title":"Runtime bonding: bd mol attach","description":"Attach a molecule to an already-running workflow.\n\nCOMMAND: bd mol attach \u003cepic-id\u003e \u003cproto\u003e [--after \u003cissue-id\u003e]\n\nBEHAVIOR:\n- Resolve running epic and proto\n- Spawn proto as new subtree\n- Wire to specified attachment point (or epic root)\n- Handle in-progress issues: new work doesn't block completed work\n\nUSE CASES:\n- Discovered need for docs while implementing feature\n- Hotfix needs attaching to release workflow\n- Additional testing scope identified mid-flight\n\nFLAGS:\n- --after ISSUE: Specific attachment point within epic\n- --type: sequential (default) or parallel\n- --var: Variables for the attached proto\n\nCONSIDERATIONS:\n- What if epic is already closed? Error or reopen?\n- What if attachment point issue is closed? Attach as ready-to-work?","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-21T00:59:16.920483-08:00","updated_at":"2025-12-21T01:08:43.530597-08:00","closed_at":"2025-12-21T01:08:43.530597-08:00","close_reason":"Merged into bd-o91r: bond command handles all bonding cases polymorphically","dependencies":[{"issue_id":"bd-66l4","depends_on_id":"bd-o5xe","type":"parent-child","created_at":"2025-12-21T00:59:51.435542-08:00","created_by":"daemon"},{"issue_id":"bd-66l4","depends_on_id":"bd-o91r","type":"blocks","created_at":"2025-12-21T00:59:51.813782-08:00","created_by":"daemon"}]} @@ -82,8 +82,8 @@ {"id":"bd-68bf","title":"Code review: bd mol bond implementation","description":"Review the mol bond command implementation before shipping.\n\nFocus areas:\n1. runMolBond() - polymorphic dispatch logic correctness\n2. bondProtoProto() - compound proto creation, dependency wiring\n3. bondProtoMol() / bondMolProto() - spawn and attach logic\n4. bondMolMol() - joining molecules, lineage tracking\n5. BondRef usage - is lineage tracked correctly?\n6. Error handling - are all failure modes covered?\n7. Edge cases - what could go wrong?\n\nFile: cmd/bd/mol.go (lines 485-859)\nCommit: 386b513e","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-21T10:13:09.425229-08:00","updated_at":"2025-12-21T11:18:14.206869-08:00","closed_at":"2025-12-21T11:18:14.206869-08:00","close_reason":"Reviewed and fixed label persistence bug","dependencies":[{"issue_id":"bd-68bf","depends_on_id":"bd-o91r","type":"discovered-from","created_at":"2025-12-21T10:13:09.426471-08:00","created_by":"daemon"}]} {"id":"bd-68e4","title":"doctor --fix should export when DB has more issues than JSONL","description":"When 'bd doctor' detects a count mismatch (DB has more issues than JSONL), it currently recommends 'bd sync --import-only', which imports JSONL into DB. But JSONL is the source of truth, not the DB.\n\n**Current behavior:**\n- Doctor detects: DB has 355 issues, JSONL has 292\n- Recommends: 'bd sync --import-only' \n- User runs it: Returns '0 created, 0 updated' (no-op, because JSONL hasn't changed)\n- User is stuck\n\n**Root cause:**\nThe doctor fix is one-directional (JSONLā†’DB) when it should be bidirectional. If DB has MORE issues, they haven't been exported yet - the fix should be 'bd export' (DBā†’JSONL), not import.\n\n**Desired fix:**\nIn fix.DBJSONLSync(), detect which has more data:\n- If DB \u003e JSONL: Run 'bd export' to sync JSONL (since DB is the working copy)\n- If JSONL \u003e DB: Run 'bd sync --import-only' to import (JSONL is source of truth)\n- If equal but timestamps differ: Detect based on file mtime\n\nThis makes 'bd doctor --fix' actually fix the problem instead of being a no-op.","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-21T11:17:20.994319182-07:00","updated_at":"2025-12-21T11:23:24.38523731-07:00","closed_at":"2025-12-21T11:23:24.38523731-07:00"} {"id":"bd-6a5z","title":"Add stale molecule check to bd doctor","description":"Extend bd doctor to detect stale molecules.\n\n**New check:**\n- Name: 'Stale Molecules'\n- Category: Workflow\n- Severity: Warning (don't fail overall check)\n\n**Detection:**\nReuse logic from bd mol stale command:\n- Find mols where Completed \u003e= Total but root is open\n- Filter to orphaned (not assigned, not pinned)\n- Extra weight if blocking other work\n\n**Output:**\n```\nāš  Stale Molecules\n Found 2 complete-but-unclosed molecules:\n - bd-xyz: Version bump v0.36.0 (blocking 1 issue)\n - bd-uvw: Old patrol (not blocking)\n Fix: bd close \u003cid\u003e or bd mol squash \u003cid\u003e\n```\n\n**--fix behavior:**\n- Auto-close stale mols (with reason 'Auto-closed by bd doctor')\n- Or prompt interactively with -i flag\n\nDepends on: bd mol stale command","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-24T18:23:24.549941-08:00","updated_at":"2025-12-24T18:23:24.549941-08:00","dependencies":[{"issue_id":"bd-6a5z","depends_on_id":"bd-anv2","type":"blocks","created_at":"2025-12-24T18:23:48.682552-08:00","created_by":"daemon"}]} -{"id":"bd-6fe4622f","title":"Remove unreachable utility functions","description":"Several small utility functions are unreachable:\n\nFiles to clean:\n1. `internal/storage/sqlite/hash.go` - `computeIssueContentHash` (line 17)\n - Check if entire file can be deleted if only contains this function\n\n2. `internal/config/config.go` - `FileUsed` (line 151)\n - Delete unused config helper\n\n3. `cmd/bd/git_sync_test.go` - `verifyIssueOpen` (line 300)\n - Delete dead test helper\n\n4. `internal/compact/haiku.go` - `HaikuClient.SummarizeTier2` (line 81)\n - Tier 2 summarization not implemented\n - Options: implement feature OR delete method\n\nImpact: Removes 50-100 LOC depending on decisions","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-28T16:20:02.434573-07:00","updated_at":"2025-12-17T22:58:34.563993-08:00","closed_at":"2025-12-17T22:58:34.563993-08:00","close_reason":"Closed"} -{"id":"bd-6gd","title":"Remove legacy MCP Agent Mail integration","description":"## Summary\n\nRemove the legacy MCP Agent Mail system that requires an external HTTP server. Keep the native `bd mail` system which stores messages as git-synced issues.\n\n## Background\n\nTwo mail systems exist in the codebase:\n1. **Legacy Agent Mail** (`bd message`) - External server dependency, complex setup\n2. **Native bd mail** (`bd mail`) - Built-in, git-synced, no dependencies\n\nThe legacy system causes confusion and is no longer needed. Gas Town's Town Mail will use the native `bd mail` system.\n\n## Files to Delete\n\n### CLI Command\n- [ ] `cmd/bd/message.go` - The `bd message` command implementation\n\n### MCP Integration\n- [ ] `integrations/beads-mcp/src/beads_mcp/mail.py` - HTTP wrapper for Agent Mail server\n- [ ] `integrations/beads-mcp/src/beads_mcp/mail_tools.py` - MCP tool definitions\n- [ ] `integrations/beads-mcp/tests/test_mail.py` - Tests for legacy mail\n\n### Documentation\n- [ ] `docs/AGENT_MAIL.md`\n- [ ] `docs/AGENT_MAIL_QUICKSTART.md`\n- [ ] `docs/AGENT_MAIL_DEPLOYMENT.md`\n- [ ] `docs/AGENT_MAIL_MULTI_WORKSPACE_SETUP.md`\n- [ ] `docs/adr/002-agent-mail-integration.md`\n\n## Code to Update\n\n- [ ] Remove `message` command registration from `cmd/bd/main.go`\n- [ ] Remove mail tool imports/registration from MCP server `__init__.py` or `server.py`\n- [ ] Check for any other references to Agent Mail in the codebase\n\n## Verification\n\n- [ ] `bd message` command no longer exists\n- [ ] `bd mail` command still works\n- [ ] MCP server starts without errors\n- [ ] Tests pass\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T23:04:04.099935-08:00","updated_at":"2025-12-17T23:13:24.128752-08:00","closed_at":"2025-12-17T23:13:24.128752-08:00","close_reason":"Removed legacy MCP Agent Mail integration. Kept native bd mail system."} +{"id":"bd-6fe4622f","title":"Remove unreachable utility functions","description":"Several small utility functions are unreachable:\n\nFiles to clean:\n1. `internal/storage/sqlite/hash.go` - `computeIssueContentHash` (line 17)\n - Check if entire file can be deleted if only contains this function\n\n2. `internal/config/config.go` - `FileUsed` (line 151)\n - Delete unused config helper\n\n3. `cmd/bd/git_sync_test.go` - `verifyIssueOpen` (line 300)\n - Delete dead test helper\n\n4. `internal/compact/haiku.go` - `HaikuClient.SummarizeTier2` (line 81)\n - Tier 2 summarization not implemented\n - Options: implement feature OR delete method\n\nImpact: Removes 50-100 LOC depending on decisions","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-10-28T16:20:02.434573-07:00","updated_at":"2025-12-25T01:21:01.952723-08:00","close_reason":"Closed","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-6gd","title":"Remove legacy MCP Agent Mail integration","description":"## Summary\n\nRemove the legacy MCP Agent Mail system that requires an external HTTP server. Keep the native `bd mail` system which stores messages as git-synced issues.\n\n## Background\n\nTwo mail systems exist in the codebase:\n1. **Legacy Agent Mail** (`bd message`) - External server dependency, complex setup\n2. **Native bd mail** (`bd mail`) - Built-in, git-synced, no dependencies\n\nThe legacy system causes confusion and is no longer needed. Gas Town's Town Mail will use the native `bd mail` system.\n\n## Files to Delete\n\n### CLI Command\n- [ ] `cmd/bd/message.go` - The `bd message` command implementation\n\n### MCP Integration\n- [ ] `integrations/beads-mcp/src/beads_mcp/mail.py` - HTTP wrapper for Agent Mail server\n- [ ] `integrations/beads-mcp/src/beads_mcp/mail_tools.py` - MCP tool definitions\n- [ ] `integrations/beads-mcp/tests/test_mail.py` - Tests for legacy mail\n\n### Documentation\n- [ ] `docs/AGENT_MAIL.md`\n- [ ] `docs/AGENT_MAIL_QUICKSTART.md`\n- [ ] `docs/AGENT_MAIL_DEPLOYMENT.md`\n- [ ] `docs/AGENT_MAIL_MULTI_WORKSPACE_SETUP.md`\n- [ ] `docs/adr/002-agent-mail-integration.md`\n\n## Code to Update\n\n- [ ] Remove `message` command registration from `cmd/bd/main.go`\n- [ ] Remove mail tool imports/registration from MCP server `__init__.py` or `server.py`\n- [ ] Check for any other references to Agent Mail in the codebase\n\n## Verification\n\n- [ ] `bd message` command no longer exists\n- [ ] `bd mail` command still works\n- [ ] MCP server starts without errors\n- [ ] Tests pass\n","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-17T23:04:04.099935-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","close_reason":"Removed legacy MCP Agent Mail integration. Kept native bd mail system.","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-6ns7","title":"test hook pin","status":"tombstone","priority":2,"issue_type":"task","assignee":"stevey","created_at":"2025-12-23T04:39:16.619755-08:00","updated_at":"2025-12-23T04:51:29.436788-08:00","deleted_at":"2025-12-23T04:51:29.436788-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} {"id":"bd-6pc","title":"Implement bd pin/unpin commands","description":"Add 'bd pin \u003cid\u003e' and 'bd unpin \u003cid\u003e' commands to toggle the pinned status of issues. Should support multiple IDs like other bd commands.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:28.292937-08:00","updated_at":"2025-12-19T17:43:35.713398-08:00","closed_at":"2025-12-19T00:35:31.612589-08:00","dependencies":[{"issue_id":"bd-6pc","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.119852-08:00","created_by":"daemon"},{"issue_id":"bd-6pc","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.352848-08:00","created_by":"daemon"}]} {"id":"bd-6rl","title":"Merge3Way public API does not expose TTL parameter","description":"The public Merge3Way() function in merge.go does not allow callers to configure the tombstone TTL. It hard-codes the default via merge3WayWithTTL(). While merge3WayWithTTL() exists, it is unexported (lowercase). This means the CLI and tests cannot configure TTL at merge time. Use cases: testing with different TTL values, per-repository TTL configuration, debugging with short TTL, supporting --ttl flag in bd merge command (mentioned in design doc bd-zvg). Recommendation: Export Merge3WayWithTTL (rename to uppercase). Files: internal/merge/merge.go:77, 292-298","status":"open","priority":3,"issue_type":"feature","created_at":"2025-12-05T16:36:15.756814-08:00","updated_at":"2025-12-05T16:36:15.756814-08:00"} @@ -91,12 +91,12 @@ {"id":"bd-6sm6","title":"Improve test coverage for internal/export (37.1% ā†’ 60%)","description":"The export package has only 37.1% test coverage. Export functionality needs good coverage to ensure data integrity.\n\nCurrent coverage: 37.1%\nTarget coverage: 60%","status":"closed","priority":2,"issue_type":"task","assignee":"beads/alpha","created_at":"2025-12-13T20:43:06.802277-08:00","updated_at":"2025-12-23T22:32:29.16846-08:00","closed_at":"2025-12-23T22:32:29.16846-08:00","close_reason":"Coverage already at 71.8% (target was 60%). Recent commits ba8beb53 and e3e0a044 added tests."} {"id":"bd-6ss","title":"Improve test coverage","description":"The test suite reports less than 45% code coverage. Identify the specific uncovered areas of the codebase, including modules, functions, or features. Rank them by potential impact on system reliability and business value, from most to least, and provide actionable recommendations for improving coverage in each area.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-18T06:54:23.036822442-07:00","updated_at":"2025-12-18T07:17:49.245940799-07:00","closed_at":"2025-12-18T07:17:49.245940799-07:00"} {"id":"bd-70an","title":"test pin","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-21T11:19:16.760214-08:00","updated_at":"2025-12-21T11:19:46.500688-08:00","closed_at":"2025-12-21T11:19:46.500688-08:00","close_reason":"test issue for pin fix"} -{"id":"bd-746","title":"Fix resolvePartialID stub in workflow.go","description":"The resolvePartialID function at workflow.go:921-925 is a stub that just returns the ID unchanged. Should use utils.ResolvePartialID for proper partial ID resolution in direct mode (non-daemon).","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-17T22:22:57.586917-08:00","updated_at":"2025-12-17T22:34:07.270168-08:00","closed_at":"2025-12-17T22:34:07.270168-08:00"} +{"id":"bd-746","title":"Fix resolvePartialID stub in workflow.go","description":"The resolvePartialID function at workflow.go:921-925 is a stub that just returns the ID unchanged. Should use utils.ResolvePartialID for proper partial ID resolution in direct mode (non-daemon).","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-17T22:22:57.586917-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-74w1","title":"Consolidate duplicate path-finding utilities (findJSONLPath, findBeadsDir, findGitRoot)","description":"Code health review found these functions defined in multiple places:\n\n- findJSONLPath() in autoflush.go:45-73 and doctor/fix/migrate.go\n- findBeadsDir() in autoimport.go:197-239 (with git worktree handling)\n- findGitRoot() in autoimport.go:242-269 (Windows path conversion)\n\nThe beads package has public FindBeadsDir() and FindJSONLPath() APIs that should be used consistently.\n\nImpact: Bug fixes need to be applied in multiple places. Git worktree handling may not be replicated everywhere.\n\nFix: Consolidate all implementations to use the beads package APIs. Remove duplicates.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-16T18:17:16.694293-08:00","updated_at":"2025-12-22T21:13:46.83103-08:00","closed_at":"2025-12-22T21:13:46.83103-08:00","close_reason":"Consolidated duplicate path-finding utilities: findGitRoot() now delegates to git.GetRepoRoot(), findBeadsDir() replaced with beads.FindBeadsDir() across 8 files"} {"id":"bd-754r","title":"Merge: bd-thgk","description":"branch: polecat/Compactor\ntarget: main\nsource_issue: bd-thgk\nrig: beads","status":"closed","priority":1,"issue_type":"merge-request","created_at":"2025-12-23T13:41:43.965771-08:00","updated_at":"2025-12-23T19:12:08.345449-08:00","closed_at":"2025-12-23T19:12:08.345449-08:00","close_reason":"Stale merge-requests from orphaned polecat branches - refinery not processing"} {"id":"bd-77gm","title":"Import reports misleading '0 created, 0 updated' when actually importing all issues","description":"When running 'bd import' on a fresh database (no existing issues), the command reports 'Import complete: 0 created, 0 updated' even though it successfully imported all issues from the JSONL file.\n\n**Steps to reproduce:**\n1. Delete .beads/beads.db\n2. Run: bd import .beads/issues.jsonl\n3. Observe output: 'Import complete: 0 created, 0 updated'\n4. Run: bd list\n5. Confirm: All issues are actually present in the database\n\n**Expected behavior:**\nReport the actual number of issues imported, e.g., 'Import complete: 523 created, 0 updated'\n\n**Actual behavior:**\n'Import complete: 0 created, 0 updated' (misleading - makes user think import failed)\n\n**Impact:**\n- Users think import failed when it succeeded\n- Confusing during database sync operations (e.g., after git pull)\n- Makes debugging harder (can't tell if import actually worked)\n\n**Context:**\nDiscovered during VC session when syncing database after git pull. The misleading message caused confusion about whether the database was properly synced with the canonical JSONL file.","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-11-09T16:20:13.191156-08:00","updated_at":"2025-12-21T21:13:27.057292-08:00","closed_at":"2025-12-21T21:13:27.057292-08:00","close_reason":"Already fixed in commit 196ce3a6 - added validation for positional arguments"} {"id":"bd-7b7h","title":"bd sync --merge fails due to chicken-and-egg: .beads/ always dirty","description":"## Problem\n\nWhen sync.branch is configured (e.g., beads-sync), the bd sync workflow creates a chicken-and-egg problem:\n\n1. `bd sync` commits changes to beads-sync via worktree\n2. `bd sync` copies JSONL to main working dir via `copyJSONLToMainRepo()` (sync.go line 364, worktree.go line 678-685)\n3. The copy is NOT committed to main - it just updates the working tree\n4. `bd sync --merge` checks for clean working dir (sync.go line 1547-1548)\n5. `bd sync --merge` FAILS because .beads/issues.jsonl is uncommitted!\n\n## Impact\n\n- sync.branch workflow is fundamentally broken\n- Users cannot periodically merge beads-sync ā†’ main\n- Main branch always shows as dirty\n- Creates confusion about git state\n\n## Root Cause\n\nsync.go:1547-1548:\n```go\nif len(strings.TrimSpace(string(statusOutput))) \u003e 0 {\n return fmt.Errorf(\"main branch has uncommitted changes, please commit or stash them first\")\n}\n```\n\nThis check blocks merge when ANY uncommitted changes exist, including the .beads/ changes that `bd sync` itself created.\n\n## Proposed Fix\n\nOption A: Exclude .beads/ from the clean check in `mergeSyncBranch`:\n```go\n// Check if there are non-beads uncommitted changes\nstatusCmd := exec.CommandContext(ctx, \"git\", \"status\", \"--porcelain\", \"--\", \":!.beads/\")\n```\n\nOption B: Auto-stash .beads/ changes before merge, restore after\n\nOption C: Change the workflow - do not copy JSONL to main working dir, instead always read from worktree\n\n## Files to Modify\n\n- cmd/bd/sync.go:1540-1549 (mergeSyncBranch function)\n- Possibly internal/syncbranch/worktree.go (copyJSONLToMainRepo)","notes":"## Fix Implemented\n\nModified cmd/bd/sync.go mergeSyncBranch function:\n\n1. **Exclude .beads/ from dirty check** (line 1543):\n Changed `git status --porcelain` to `git status --porcelain -- :!.beads/`\n This allows merge to proceed when only .beads/ has uncommitted changes.\n\n2. **Restore .beads/ to HEAD before merge** (lines 1553-1561):\n Added `git checkout HEAD -- .beads/` before merge to prevent\n \"Your local changes would be overwritten by merge\" errors.\n The .beads/ changes are redundant since they came FROM beads-sync.\n\n## Testing\n\n- All cmd/bd sync/merge tests pass\n- All internal/syncbranch tests pass\n- Manual verification needed for full workflow","status":"tombstone","priority":0,"issue_type":"bug","created_at":"2025-12-16T23:06:06.97703-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-7bbc4e6a","title":"Add MCP server functions for repair commands","description":"**Summary:** Added MCP server repair functions for agent dependency management, system validation, and pollution detection. Implemented across BdClientBase, BdCliClient, and daemon clients to enhance system diagnostics and self-healing capabilities.\n\n**Key Decisions:** \n- Expose repair_deps(), detect_pollution(), validate() via MCP server\n- Create abstract method stubs with fallback to CLI execution\n- Use @mcp.tool decorators for function registration\n\n**Resolution:** Successfully implemented comprehensive repair command infrastructure, enabling more robust system health monitoring and automated remediation with full CLI and daemon support.","notes":"Implemented all three MCP server functions:\n\n1. **repair_deps(fix=False)** - Find/fix orphaned dependencies\n2. **detect_pollution(clean=False)** - Detect/clean test issues \n3. **validate(checks=None, fix_all=False)** - Run comprehensive health checks\n\nChanges:\n- Added abstract methods to BdClientBase\n- Implemented in BdCliClient (CLI execution)\n- Added NotImplementedError stubs in BdDaemonClient (falls back to CLI)\n- Created wrapper functions in tools.py\n- Registered @mcp.tool decorators in server.py\n\nAll commands tested and working with --no-daemon flag.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-28T19:37:55.72639-07:00","updated_at":"2025-12-16T01:08:11.983953-08:00","closed_at":"2025-11-07T19:38:12.152437-08:00"} +{"id":"bd-7bbc4e6a","title":"Add MCP server functions for repair commands","description":"**Summary:** Added MCP server repair functions for agent dependency management, system validation, and pollution detection. Implemented across BdClientBase, BdCliClient, and daemon clients to enhance system diagnostics and self-healing capabilities.\n\n**Key Decisions:** \n- Expose repair_deps(), detect_pollution(), validate() via MCP server\n- Create abstract method stubs with fallback to CLI execution\n- Use @mcp.tool decorators for function registration\n\n**Resolution:** Successfully implemented comprehensive repair command infrastructure, enabling more robust system health monitoring and automated remediation with full CLI and daemon support.","notes":"Implemented all three MCP server functions:\n\n1. **repair_deps(fix=False)** - Find/fix orphaned dependencies\n2. **detect_pollution(clean=False)** - Detect/clean test issues \n3. **validate(checks=None, fix_all=False)** - Run comprehensive health checks\n\nChanges:\n- Added abstract methods to BdClientBase\n- Implemented in BdCliClient (CLI execution)\n- Added NotImplementedError stubs in BdDaemonClient (falls back to CLI)\n- Created wrapper functions in tools.py\n- Registered @mcp.tool decorators in server.py\n\nAll commands tested and working with --no-daemon flag.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-10-28T19:37:55.72639-07:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-7bs4","title":"Release v{{version}}","description":"Clean release workflow for beads. Variables: version (e.g., 0.37.0), date (YYYY-MM-DD)","status":"open","priority":1,"issue_type":"epic","created_at":"2025-12-24T16:20:49.905172-08:00","updated_at":"2025-12-24T16:20:49.905172-08:00","labels":["molecule","template"],"dependencies":[{"issue_id":"bd-7bs4","depends_on_id":"bd-qqc","type":"supersedes","created_at":"2025-12-24T16:22:59.957519-08:00","created_by":"daemon"}]} {"id":"bd-7bs4.1","title":"Verify CI is green","description":"Check that CI is passing before starting release:\n```bash\ngh run list --limit 3\n```\nAll recent runs should show 'success'. If not, fix issues first.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-24T16:21:03.112-08:00","updated_at":"2025-12-24T16:21:03.112-08:00","dependencies":[{"issue_id":"bd-7bs4.1","depends_on_id":"bd-7bs4","type":"parent-child","created_at":"2025-12-24T16:21:03.112453-08:00","created_by":"daemon"}]} {"id":"bd-7bs4.10","title":"Update Homebrew formula","description":"./scripts/update-homebrew.sh {{version}}","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-24T16:22:20.238562-08:00","updated_at":"2025-12-24T16:22:20.238562-08:00","dependencies":[{"issue_id":"bd-7bs4.10","depends_on_id":"bd-7bs4","type":"parent-child","created_at":"2025-12-24T16:22:20.238936-08:00","created_by":"daemon"},{"issue_id":"bd-7bs4.10","depends_on_id":"bd-7bs4.9","type":"blocks","created_at":"2025-12-24T16:22:37.977163-08:00","created_by":"daemon"}]} @@ -119,15 +119,15 @@ {"id":"bd-7m16","title":"GH#519: bd sync fails when sync.branch is currently checked-out branch","description":"bd sync tries to create worktree for sync.branch even when already on that branch. Should commit directly instead. See GitHub issue #519.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:36.613211-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-7pwh","title":"HOP-compatible schema additions","description":"Add optional fields to Beads schema to enable future HOP integration.\nAll fields are backwards-compatible (optional, omitted if empty).\n\n## Reference\nSee ~/gt/docs/hop/BEADS-SCHEMA-CHANGES.md for full specification.\n\n## P1 Changes (Must Have Before Launch)\n\n### 1. EntityRef type\nStructured entity reference that can become HOP URI:\n```go\ntype EntityRef struct {\n Name string // \"polecat/Nux\"\n Platform string // \"gastown\"\n Org string // \"steveyegge\" \n ID string // \"polecat-nux\"\n}\n```\n\n### 2. creator field\nEvery issue tracks who created it (EntityRef).\n\n### 3. assignee_ref field\nStructured form alongside existing string assignee.\n\n### 4. validations array\nTrack who validated work completion:\n```go\ntype Validation struct {\n Validator *EntityRef\n Outcome string // accepted, rejected, revision_requested\n Timestamp time.Time\n Score *float32 // Future\n}\n```\n\n## P2 Changes (Should Have)\n\n### 5. work_type field\n\"mutex\" (default) or \"open_competition\"\n\n### 6. crystallizes field\nBoolean - does this work compound (true) or evaporate (false)?\n\n### 7. cross_refs field\nArray of URIs to beads in other repos:\n- \"beads://github/anthropics/claude-code/bd-xyz\"\n\n## P3 Changes (Nice to Have)\n\n### 8. skill_vector placeholder\nReserved for future embeddings: []float32\n\n## Implementation Notes\n- All fields optional in JSONL serialization\n- Empty/null fields omit from output\n- No migration needed for existing data\n- CLI additions: --creator, --validated-by filters","notes":"Scope reduced after review. P1 only: EntityRef type, creator field, validations array. Deferred: assignee_ref, work_type, crystallizes, cross_refs, skill_vector (YAGNI - semantics unclear, can add later when needed).","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-22T02:42:39.267984-08:00","updated_at":"2025-12-22T20:09:09.211821-08:00","closed_at":"2025-12-22T20:09:09.211821-08:00","close_reason":"HOP P1 schema additions complete: EntityRef type, Creator field, Validations array. P2/P3 items deferred to bd-zt59."} {"id":"bd-7tuu","title":"Commit and push release","description":"git add -A \u0026\u0026 git commit \u0026\u0026 git push to trigger CI","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:02.053382-08:00","updated_at":"2025-12-20T01:23:52.484043-08:00","closed_at":"2025-12-20T01:23:52.484043-08:00","close_reason":"Superseded by 0.30.7 release - already committed and pushed","dependencies":[{"issue_id":"bd-7tuu","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.021087-08:00","created_by":"daemon"},{"issue_id":"bd-7tuu","depends_on_id":"bd-hw3w","type":"blocks","created_at":"2025-12-19T22:56:23.291591-08:00","created_by":"daemon"}]} -{"id":"bd-7yg","title":"Git merge driver uses invalid placeholders (%L, %R instead of %A, %B)","description":"## Problem\n\nThe beads git merge driver is configured with invalid Git placeholders:\n\n```\ngit config merge.beads.driver \"bd merge %A %O %L %R\"\n```\n\nGit doesn't recognize `%L` or `%R` as valid merge driver placeholders. The valid placeholders are:\n- `%O` = base (common ancestor)\n- `%A` = current version (ours)\n- `%B` = other version (theirs)\n\n## Impact\n\n- Affects ALL users when they have `.beads/beads.jsonl` merge conflicts\n- Automatic JSONL merge fails with error: \"error reading left file: failed to open file: open 7: no such file or directory\"\n- Users must manually resolve conflicts instead of getting automatic merge\n\n## Root Cause\n\nThe `bd init` command (or wherever the merge driver is configured) is using non-standard placeholders. When Git encounters `%L` and `%R`, it either passes them literally or interprets them incorrectly.\n\n## Fix\n\nUpdate the merge driver configuration to:\n```\ngit config merge.beads.driver \"bd merge %A %O %A %B\"\n```\n\nWhere:\n- 1st `%A` = output file (current file, will be overwritten)\n- `%O` = base (common ancestor)\n- 2nd `%A` = left/current version\n- `%B` = right/other version\n\n## Action Items\n\n1. Fix `bd init` (or equivalent setup command) to use correct placeholders\n2. Add migration/warning for existing users with misconfigured merge driver\n3. Update documentation with correct merge driver setup\n4. Consider adding validation when `bd init` is run","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-21T19:51:55.747608-05:00","updated_at":"2025-12-17T23:13:40.532368-08:00","closed_at":"2025-12-17T17:24:52.678668-08:00"} +{"id":"bd-7yg","title":"Git merge driver uses invalid placeholders (%L, %R instead of %A, %B)","description":"## Problem\n\nThe beads git merge driver is configured with invalid Git placeholders:\n\n```\ngit config merge.beads.driver \"bd merge %A %O %L %R\"\n```\n\nGit doesn't recognize `%L` or `%R` as valid merge driver placeholders. The valid placeholders are:\n- `%O` = base (common ancestor)\n- `%A` = current version (ours)\n- `%B` = other version (theirs)\n\n## Impact\n\n- Affects ALL users when they have `.beads/beads.jsonl` merge conflicts\n- Automatic JSONL merge fails with error: \"error reading left file: failed to open file: open 7: no such file or directory\"\n- Users must manually resolve conflicts instead of getting automatic merge\n\n## Root Cause\n\nThe `bd init` command (or wherever the merge driver is configured) is using non-standard placeholders. When Git encounters `%L` and `%R`, it either passes them literally or interprets them incorrectly.\n\n## Fix\n\nUpdate the merge driver configuration to:\n```\ngit config merge.beads.driver \"bd merge %A %O %A %B\"\n```\n\nWhere:\n- 1st `%A` = output file (current file, will be overwritten)\n- `%O` = base (common ancestor)\n- 2nd `%A` = left/current version\n- `%B` = right/other version\n\n## Action Items\n\n1. Fix `bd init` (or equivalent setup command) to use correct placeholders\n2. Add migration/warning for existing users with misconfigured merge driver\n3. Update documentation with correct merge driver setup\n4. Consider adding validation when `bd init` is run","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-11-21T19:51:55.747608-05:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-7z4","title":"Add tests for delete operations","description":"Core delete functionality including deleteViaDaemon, createTombstone, and deleteIssue functions have 0% coverage. These are critical for data integrity and need comprehensive test coverage.","status":"closed","priority":1,"issue_type":"task","assignee":"beads/slit","created_at":"2025-12-18T07:00:34.867680882-07:00","updated_at":"2025-12-23T23:48:50.087306-08:00","closed_at":"2025-12-23T23:48:50.087306-08:00","close_reason":"Added comprehensive tests for deleteViaDaemon, createTombstone, and deleteIssue functions","dependencies":[{"issue_id":"bd-7z4","depends_on_id":"bd-6ss","type":"discovered-from","created_at":"2025-12-18T07:00:34.870254935-07:00","created_by":"matt"}]} {"id":"bd-801b","title":"Merge: bd-bqcc","description":"branch: polecat/capable\ntarget: main\nsource_issue: bd-bqcc\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-23T00:26:04.306756-08:00","updated_at":"2025-12-23T01:33:25.728087-08:00","closed_at":"2025-12-23T01:33:25.728087-08:00","close_reason":"Merged to main"} -{"id":"bd-89f89fc0","title":"Remove unreachable RPC methods","description":"Several RPC server and client methods are unreachable and should be removed:\n\nServer methods (internal/rpc/server.go):\n- `Server.GetLastImportTime` (line 2116)\n- `Server.SetLastImportTime` (line 2123)\n- `Server.findJSONLPath` (line 2255)\n\nClient methods (internal/rpc/client.go):\n- `Client.Import` (line 311) - RPC import not used (daemon uses autoimport)\n\nEvidence:\n```bash\ngo run golang.org/x/tools/cmd/deadcode@latest -test ./...\n```\n\nImpact: Removes ~80 LOC of unused RPC code","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-28T16:20:02.432202-07:00","updated_at":"2025-12-17T22:58:34.564401-08:00","closed_at":"2025-12-17T22:58:34.564401-08:00","close_reason":"Closed"} +{"id":"bd-89f89fc0","title":"Remove unreachable RPC methods","description":"Several RPC server and client methods are unreachable and should be removed:\n\nServer methods (internal/rpc/server.go):\n- `Server.GetLastImportTime` (line 2116)\n- `Server.SetLastImportTime` (line 2123)\n- `Server.findJSONLPath` (line 2255)\n\nClient methods (internal/rpc/client.go):\n- `Client.Import` (line 311) - RPC import not used (daemon uses autoimport)\n\nEvidence:\n```bash\ngo run golang.org/x/tools/cmd/deadcode@latest -test ./...\n```\n\nImpact: Removes ~80 LOC of unused RPC code","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-10-28T16:20:02.432202-07:00","updated_at":"2025-12-25T01:21:01.952723-08:00","close_reason":"Closed","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-8b0x","title":"Remove molecule.go (simple instantiation)","description":"molecule.go uses is_template field for simple single-issue cloning. This is too simple for what molecules should be - full DAG orchestration. The use case is covered by bd mol bond with a single-issue molecule. Delete molecule.go and its commands.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-20T23:52:15.041776-08:00","updated_at":"2025-12-21T00:04:32.335849-08:00","closed_at":"2025-12-21T00:04:32.335849-08:00","close_reason":"Removed molecule.go - use bd mol bond instead","dependencies":[{"issue_id":"bd-8b0x","depends_on_id":"bd-ffjt","type":"blocks","created_at":"2025-12-20T23:52:25.807967-08:00","created_by":"daemon"}]} {"id":"bd-8ca7","title":"Merge: bd-au0.6","description":"branch: polecat/furiosa\ntarget: main\nsource_issue: bd-au0.6\nrig: beads","status":"closed","priority":1,"issue_type":"merge-request","created_at":"2025-12-23T20:42:30.870178-08:00","updated_at":"2025-12-23T21:21:57.695179-08:00","closed_at":"2025-12-23T21:21:57.695179-08:00","close_reason":"stale - no code pushed"} {"id":"bd-8e0q","title":"Merge: beads-ocs","description":"branch: polecat/valkyrie\ntarget: main\nsource_issue: beads-ocs\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:24:45.281478-08:00","updated_at":"2025-12-20T23:17:26.995706-08:00","closed_at":"2025-12-20T23:17:26.995706-08:00","close_reason":"Branches nuked, MRs obsolete"} {"id":"bd-8fgn","title":"test hash length","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T13:49:32.113843-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-8g8","title":"Fix G304 potential file inclusion in cmd/bd/tips.go:259","description":"Linting issue: G304: Potential file inclusion via variable (gosec) at cmd/bd/tips.go:259:18. Error: if data, err := os.ReadFile(settingsPath); err == nil {","status":"closed","priority":0,"issue_type":"bug","created_at":"2025-12-07T15:34:57.189730843-07:00","updated_at":"2025-12-17T23:13:40.534569-08:00","closed_at":"2025-12-17T16:46:11.029837-08:00"} +{"id":"bd-8g8","title":"Fix G304 potential file inclusion in cmd/bd/tips.go:259","description":"Linting issue: G304: Potential file inclusion via variable (gosec) at cmd/bd/tips.go:259:18. Error: if data, err := os.ReadFile(settingsPath); err == nil {","status":"tombstone","priority":0,"issue_type":"bug","created_at":"2025-12-07T15:34:57.189730843-07:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-8hy","title":"Kill running daemons","description":"Stop all bd daemons before release:\n\n```bash\npkill -f 'bd.*daemon' || true\nsleep 1\npgrep -lf 'bd.*daemon' # Should show nothing\n```","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:58.255478-08:00","updated_at":"2025-12-24T16:25:30.371693-08:00","dependencies":[{"issue_id":"bd-8hy","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.23168-08:00","created_by":"daemon"}],"deleted_at":"2025-12-24T16:25:30.371693-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} {"id":"bd-8pyn","title":"Version Bump: 0.30.7","description":"Release checklist for version 0.30.7. This molecule ensures all release steps are completed properly.","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-19T22:56:48.648694-08:00","updated_at":"2025-12-20T00:49:51.927518-08:00","closed_at":"2025-12-20T00:25:59.529183-08:00"} {"id":"bd-8v2","title":"Add {{version}} to versionChanges in info.go","description":"Add new entry at TOP of versionChanges in cmd/bd/info.go with release notes from CHANGELOG.md. Must do before bump-version.sh --commit.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:00.482846-08:00","updated_at":"2025-12-24T16:25:30.231077-08:00","dependencies":[{"issue_id":"bd-8v2","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.496649-08:00","created_by":"daemon"},{"issue_id":"bd-8v2","depends_on_id":"bd-kyo","type":"blocks","created_at":"2025-12-18T22:43:20.69619-08:00","created_by":"daemon"}],"deleted_at":"2025-12-24T16:25:30.231077-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} @@ -147,10 +147,10 @@ {"id":"bd-a15d","title":"Add test files for internal/storage","description":"The internal/storage package has no test files at all. This package provides the storage interface abstraction.\n\nCurrent coverage: N/A (no test files)\nTarget: Add basic interface tests","status":"closed","priority":2,"issue_type":"task","assignee":"beads/valkyrie","created_at":"2025-12-13T20:43:11.363017-08:00","updated_at":"2025-12-23T23:56:07.002735-08:00","closed_at":"2025-12-23T23:56:07.002735-08:00","close_reason":"Closed"} {"id":"bd-a3sj","title":"RemoveDependency fails on external deps - FK violation in dirty_issues","description":"In dependencies.go:225, RemoveDependency marks BOTH issueID and dependsOnID as dirty. For external refs (e.g., external:project:capability), dependsOnID doesn't exist in the issues table. This causes FK violation since dirty_issues.issue_id has FK constraint to issues.id.\n\nFix: Check if dependsOnID starts with 'external:' and only mark source issue as dirty, matching the logic in AddDependency (lines 162-170).\n\nRepro: bd dep rm \u003cissue\u003e external:project:capability","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-21T23:44:51.981138-08:00","updated_at":"2025-12-22T17:48:29.062424-08:00","closed_at":"2025-12-22T17:48:29.062424-08:00","close_reason":"Fixed: check for external: prefix before marking dependsOnID as dirty in RemoveDependency. Added test.","dependencies":[{"issue_id":"bd-a3sj","depends_on_id":"bd-zmmy","type":"discovered-from","created_at":"2025-12-21T23:44:51.982343-08:00","created_by":"daemon"}]} {"id":"bd-a9y3","title":"Add composite index (status, priority) for common list queries","description":"SearchIssues and GetReadyWork frequently filter by status and sort by priority. Currently uses two separate indexes.\n\n**Common query pattern (queries.go:1646-1647):**\n```sql\nWHERE status = ? \nORDER BY priority ASC, created_at DESC\n```\n\n**Problem:** Index merge or full scan when both columns are used.\n\n**Solution:** Add migration:\n```sql\nCREATE INDEX IF NOT EXISTS idx_issues_status_priority ON issues(status, priority);\n```\n\n**Expected impact:** Faster bd list, bd ready with filters. Particularly noticeable at 10K+ issues.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-22T22:58:50.515275-08:00","updated_at":"2025-12-22T23:15:13.838976-08:00","closed_at":"2025-12-22T23:15:13.838976-08:00","close_reason":"Implemented in migration 026_additional_indexes.go","dependencies":[{"issue_id":"bd-a9y3","depends_on_id":"bd-h0we","type":"discovered-from","created_at":"2025-12-22T22:58:50.516072-08:00","created_by":"daemon"}]} -{"id":"bd-aay","title":"Warn on invalid depends_on references in workflow templates","description":"workflow.go:780-781 silently skips invalid dependency names. Should log a warning when a depends_on reference doesn't match any task ID in the template.","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T22:23:04.325253-08:00","updated_at":"2025-12-17T22:34:07.309495-08:00","closed_at":"2025-12-17T22:34:07.309495-08:00"} +{"id":"bd-aay","title":"Warn on invalid depends_on references in workflow templates","description":"workflow.go:780-781 silently skips invalid dependency names. Should log a warning when a depends_on reference doesn't match any task ID in the template.","status":"tombstone","priority":4,"issue_type":"task","created_at":"2025-12-17T22:23:04.325253-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-abjw","title":"Consider consolidating config.yaml parsing into shared utility","description":"Multiple places parse config.yaml with custom structs:\n\n1. **autoimport.go:148** - `localConfig{SyncBranch}`\n2. **main.go:310** - strings.Contains for no-db (fragile, see bd-r6k2)\n3. **doctor.go:863** - strings.Contains for no-db (fragile, see bd-r6k2)\n4. **internal/config/config.go** - Uses viper (but caches at startup, problematic for tests)\n\nConsider creating a shared utility in `internal/configfile/` or extending the viper config:\n\n```go\n// internal/configfile/yaml.go\ntype YAMLConfig struct {\n SyncBranch string `yaml:\"sync-branch\"`\n NoDb bool `yaml:\"no-db\"`\n IssuePrefix string `yaml:\"issue-prefix\"`\n Author string `yaml:\"author\"`\n}\n\nfunc LoadYAML(beadsDir string) (*YAMLConfig, error) {\n // Parse config.yaml with proper YAML library\n}\n```\n\nBenefits:\n- Single source of truth for config.yaml structure\n- Proper YAML parsing everywhere\n- Easier to add new config fields\n\nTrade-off: May add complexity for simple one-off reads.","status":"open","priority":4,"issue_type":"task","created_at":"2025-12-07T02:03:26.067311-08:00","updated_at":"2025-12-07T02:03:26.067311-08:00"} {"id":"bd-adoe","title":"Add --hard flag to bd cleanup to permanently cull tombstones before cutoff date","description":"Currently tombstones persist for 30 days before cleanup prunes them. Need an official way to force-cull tombstones earlier than the default TTL, for scenarios like cleaning house after extended absence where resurrection from old clones is not a concern. Proposed: bd cleanup --hard --older-than N to bypass the 30-day tombstone TTL.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:17:31.064914-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} -{"id":"bd-aec5439f","title":"Update LINTING.md with current baseline","description":"After cleanup, document the remaining acceptable baseline in LINTING.md so we can track regression.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-27T18:53:10.38679-07:00","updated_at":"2025-12-17T22:58:34.564854-08:00","closed_at":"2025-12-17T22:58:34.564854-08:00","close_reason":"Closed"} +{"id":"bd-aec5439f","title":"Update LINTING.md with current baseline","description":"After cleanup, document the remaining acceptable baseline in LINTING.md so we can track regression.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-10-27T18:53:10.38679-07:00","updated_at":"2025-12-25T01:21:01.952723-08:00","close_reason":"Closed","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-ahot","title":"HANDOFF: Molecule bonding - spawn done, bond next","description":"## Context\n\nContinuing work on bd-o5xe (Molecule bonding epic).\n\n## Completed This Session\n\n- bd-mh4w: Renamed bond to spawn in mol.go\n- bd-rnnr: Added BondRef data model to types.go\n\n## Now Unblocked\n\n1. bd-o91r: Polymorphic bond command [P1]\n2. bd-iw4z: Compound visualization [P2] \n3. bd-iq19: Distill command [P2]\n\n## Key Files\n\n- cmd/bd/mol.go\n- internal/types/types.go\n\n## Next Step\n\nStart with bd-o91r. Run bd show bd-o5xe for context.","status":"closed","priority":1,"issue_type":"message","created_at":"2025-12-21T01:32:13.940757-08:00","updated_at":"2025-12-21T11:24:30.171048-08:00","closed_at":"2025-12-21T11:24:30.171048-08:00","close_reason":"Stale handoff - work completed in later sessions"} {"id":"bd-air9","title":"bd create --parent allocates colliding child IDs when child_counters not backfilled","description":"GH#728: When explicit child IDs are created (--id bd-test.1) or imported from JSONL, child_counters table isn't updated. Then --parent auto-allocation starts at 1 and collides.\n\nFix approach: Update child_counters when creating issues with explicit hierarchical IDs that match \u003cparent\u003e.\u003cn\u003e pattern.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-24T14:27:11.990171-08:00","updated_at":"2025-12-24T14:28:40.154864-08:00","closed_at":"2025-12-24T14:28:40.154864-08:00","close_reason":"Already fixed in commit 1e7c7f5e - will be in v0.36.0"} {"id":"bd-akcq","title":"Design molecule step hooks","description":"Hooks that fire between molecule steps. When a bead in a molecule closes, trigger hook that can spawn agent attention to prompts/requests. This enables reactive orchestration - the molecule drives, hooks respond. Gas Town feature built on Beads data plane.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-20T23:52:18.63487-08:00","updated_at":"2025-12-21T17:53:19.284064-08:00","closed_at":"2025-12-21T17:53:19.284064-08:00","close_reason":"Moved to gastown: gt-ne1t","dependencies":[{"issue_id":"bd-akcq","depends_on_id":"bd-icnf","type":"blocks","created_at":"2025-12-20T23:52:25.935274-08:00","created_by":"daemon"}]} @@ -167,34 +167,34 @@ {"id":"bd-au0.8","title":"Improve clean vs cleanup command naming/documentation","description":"Clarify the difference between bd clean and bd cleanup to reduce user confusion.\n\n**Current state:**\n- bd clean: Remove temporary artifacts (.beads/bd.sock, logs, etc.)\n- bd cleanup: Delete old closed issues from database\n\n**Options:**\n1. Rename for clarity:\n - bd clean ā†’ bd clean-temp\n - bd cleanup ā†’ bd cleanup-issues\n \n2. Keep names but improve help text and documentation\n\n3. Add prominent warnings in help output\n\n**Preferred approach:** Option 2 (improve documentation)\n- Update short/long descriptions in commands\n- Add examples to help text\n- Update README.md\n- Add cross-references in help output\n\n**Files to modify:**\n- cmd/bd/clean.go\n- cmd/bd/cleanup.go\n- README.md or ADVANCED.md","status":"closed","priority":2,"issue_type":"task","assignee":"beads/dementus","created_at":"2025-11-21T21:07:49.960534-05:00","updated_at":"2025-12-23T23:48:00.594734-08:00","closed_at":"2025-12-23T23:48:00.594734-08:00","close_reason":"Documentation already comprehensive: both commands have clear short descriptions, long explanations, cross-references, examples, and explicit disclaimers about what each does NOT do","dependencies":[{"issue_id":"bd-au0.8","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:49.962743-05:00","created_by":"daemon","metadata":"{}"}]} {"id":"bd-au0.9","title":"Review and document rarely-used commands","description":"Document use cases or consider deprecation for infrequently-used commands.\n\n**Commands to review:**\n1. bd rename-prefix - How often is this used? Document use cases\n2. bd detect-pollution - Consider integrating into bd validate\n3. bd migrate-hash-ids - One-time migration, keep but document as legacy\n\n**For each command:**\n- Document typical use cases\n- Add examples to help text\n- Consider if it should be a subcommand instead\n- Add deprecation warning if appropriate\n\n**Not changing:**\n- duplicates āœ“ (useful for data quality)\n- repair-deps āœ“ (useful for fixing broken refs)\n- restore āœ“ (critical for compacted issues)\n- compact āœ“ (performance feature)\n\n**Deliverable:**\n- Updated help text\n- Documentation in ADVANCED.md\n- Deprecation plan if needed","status":"closed","priority":3,"issue_type":"task","assignee":"beads/dementus","created_at":"2025-11-21T21:08:05.588275-05:00","updated_at":"2025-12-23T23:50:04.180989-08:00","closed_at":"2025-12-23T23:50:04.180989-08:00","close_reason":"All three commands already have comprehensive docs: USE CASES, EXAMPLES, and appropriate warnings (LEGACY/rare operation notes)","dependencies":[{"issue_id":"bd-au0.9","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:08:05.59003-05:00","created_by":"daemon","metadata":"{}"}]} {"id":"bd-awmf","title":"Merge: bd-dtl8","description":"branch: polecat/dag\ntarget: main\nsource_issue: bd-dtl8\nrig: beads","status":"closed","priority":1,"issue_type":"merge-request","created_at":"2025-12-23T20:47:15.147476-08:00","updated_at":"2025-12-23T21:21:57.690692-08:00","closed_at":"2025-12-23T21:21:57.690692-08:00","close_reason":"stale - no code pushed"} -{"id":"bd-aydr","title":"Add bd reset command for clean slate restart","description":"Implement a `bd reset` command to reset beads to a clean starting state.\n\n## Context\nGitHub issue #479 - users sometimes get beads into an invalid state after updates, and there's no clean way to start fresh. The git backup/restore mechanism that protects against accidental deletion also makes it hard to intentionally reset.\n\n## Design\n\n### Command Interface\n```\nbd reset [--hard] [--force] [--backup] [--dry-run] [--no-init]\n```\n\n| Flag | Effect |\n|------|--------|\n| `--hard` | Also remove from git index and commit |\n| `--force` | Skip confirmation prompt |\n| `--backup` | Create `.beads-backup-{timestamp}/` first |\n| `--dry-run` | Preview what would happen |\n| `--no-init` | Don't re-initialize after clearing |\n\n### Reset Levels\n1. **Soft Reset (default)** - Kill daemons, clear .beads/, re-init. Git history unchanged.\n2. **Hard Reset (`--hard`)** - Also git rm and commit the removal, then commit fresh state.\n\n### Implementation Flow\n1. Validate .beads/ exists\n2. If not --force: show impact summary, prompt confirmation\n3. If --backup: copy .beads/ to .beads-backup-{timestamp}/\n4. Kill daemons\n5. If --hard: git rm + commit\n6. rm -rf .beads/*\n7. If not --no-init: bd init (and git add+commit if --hard)\n8. Print summary\n\n### Safety Mechanisms\n- Confirmation prompt (skip with --force)\n- Impact summary (issue/tombstone counts)\n- Backup option\n- Dry-run preview\n- Git dirty check warning\n\n### Code Structure\n- `cmd/bd/reset.go` - CLI command\n- `internal/reset/` - Core logic package","status":"closed","priority":2,"issue_type":"epic","created_at":"2025-12-13T08:44:01.38379+11:00","updated_at":"2025-12-13T06:24:29.561294-08:00","closed_at":"2025-12-13T10:18:19.965287+11:00"} -{"id":"bd-aydr.1","title":"Implement core reset package (internal/reset)","description":"Create the core reset logic in internal/reset/ package.\n\n## Responsibilities\n- ResetOptions struct with all flag options\n- CountImpact() - count issues/tombstones that will be deleted\n- ValidateState() - check .beads/ exists, check git dirty state\n- ExecuteReset() - main reset logic (without CLI concerns)\n- Integrate with daemon killall\n\n## Interface Design\n```go\ntype ResetOptions struct {\n Hard bool // Include git operations (git rm, commit)\n Backup bool // Create backup before reset\n DryRun bool // Preview only, don't execute\n SkipInit bool // Don't re-initialize after reset\n}\n\ntype ResetResult struct {\n IssuesDeleted int\n TombstonesDeleted int\n BackupPath string // if backup was created\n DaemonsKilled int\n}\n\ntype ImpactSummary struct {\n IssueCount int\n OpenCount int\n ClosedCount int\n TombstoneCount int\n HasUncommitted bool // git dirty state\n}\n\nfunc Reset(opts ResetOptions) (*ResetResult, error)\nfunc CountImpact() (*ImpactSummary, error)\nfunc ValidateState() error\n```\n\n## IMPORTANT: CLI vs Core Separation\n- `Force` (skip confirmation) is NOT in ResetOptions - that's a CLI concern\n- Core always executes when called; CLI decides whether to prompt first\n- Keep CLI-agnostic: no prompts, no colored output, no user interaction\n- Return errors for CLI to handle with user-friendly messages\n- Unit testable in isolation\n\n## Dependencies\n- Uses daemon.KillAllDaemons() from internal/daemon/\n- Calls bd init logic after reset (unless SkipInit)","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:50.145364+11:00","updated_at":"2025-12-13T10:13:32.610253+11:00","closed_at":"2025-12-13T09:20:06.184893+11:00","dependencies":[{"issue_id":"bd-aydr.1","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:50.145775+11:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-aydr.2","title":"Implement backup functionality for reset","description":"Add backup capability that can be used by reset command.\n\n## Functionality\n- Copy .beads/ to .beads-backup-{timestamp}/\n- Timestamp format: YYYYMMDD-HHMMSS\n- Preserve file permissions\n- Return backup path for user feedback\n\n## Location\n`internal/reset/backup.go` - keep with reset package for now (YAGNI)\n\n## Interface\n```go\nfunc CreateBackup(beadsDir string) (backupPath string, err error)\n```\n\n## Notes\n- Simple recursive file copy, no compression needed\n- Error if backup dir already exists (unlikely with timestamp)\n- Backup directories SHOULD be gitignored\n- Add `.beads-backup-*/` pattern to .beads/.gitignore template in doctor package\n- Consider: ListBackups() for future `bd backup list` command (not for this PR)","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:51.306103+11:00","updated_at":"2025-12-13T10:13:32.610819+11:00","closed_at":"2025-12-13T09:20:20.590488+11:00","dependencies":[{"issue_id":"bd-aydr.2","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:51.306474+11:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-aydr.3","title":"Add git operations for --hard reset","description":"Implement git integration for hard reset mode.\n\n## Operations Needed\n1. `git rm -rf .beads/*.jsonl` - remove data files from index\n2. `git commit -m 'beads: reset to clean state'` - commit removal\n3. After re-init: `git add .beads/` and commit fresh state\n\n## Edge Cases to Handle\n- Uncommitted changes in .beads/ - warn or error\n- Detached HEAD state - warn, maybe block\n- Git not initialized - skip git ops, warn\n- Git operations fail mid-way - clear error messaging\n\n## Interface\n```go\ntype GitState struct {\n IsRepo bool\n IsDirty bool // uncommitted changes in .beads/\n IsDetached bool // detached HEAD\n Branch string // current branch name\n}\n\nfunc CheckGitState(beadsDir string) (*GitState, error)\nfunc GitRemoveBeads(beadsDir string) error\nfunc GitCommitReset(message string) error\nfunc GitAddAndCommit(beadsDir, message string) error\n```\n\n## Location\n`internal/reset/git.go` - keep with reset package for now\n\nNote: Codebase has no central git package. internal/compact/git.go is compact-specific.\nFuture refactoring could extract shared git utilities, but YAGNI for now.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:52.798312+11:00","updated_at":"2025-12-13T10:13:32.611131+11:00","closed_at":"2025-12-13T09:17:40.785927+11:00","dependencies":[{"issue_id":"bd-aydr.3","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:52.798715+11:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-aydr.4","title":"Implement CLI command (cmd/bd/reset.go)","description":"Wire up the reset command with Cobra CLI.\n\n## Responsibilities\n- Define command and all flags\n- User confirmation prompt (unless --force)\n- Display impact summary before confirmation\n- Colored output and progress indicators\n- Call core reset package\n- Handle errors with user-friendly messages\n- Register command with rootCmd in init()\n\n## Flags\n```go\n--hard bool \"Also remove from git and commit\"\n--force bool \"Skip confirmation prompt\"\n--backup bool \"Create backup before reset\"\n--dry-run bool \"Preview what would happen\"\n--skip-init bool \"Do not re-initialize after reset\"\n--verbose bool \"Show detailed progress output\"\n```\n\n## Output Format\n```\nāš ļø This will reset beads to a clean state.\n\nWill be deleted:\n ā€¢ 47 issues (23 open, 24 closed)\n ā€¢ 12 tombstones\n\nContinue? [y/N] y\n\nā†’ Stopping daemons... āœ“\nā†’ Removing .beads/... āœ“\nā†’ Initializing fresh... āœ“\n\nāœ“ Reset complete. Run 'bd onboard' to set up hooks.\n```\n\n## Implementation Notes\n- Confirmation logic lives HERE, not in core package\n- Use color package (github.com/fatih/color) for output\n- Follow patterns from other commands (init.go, doctor.go)\n- Add to rootCmd in init() function\n\n## File Location\n`cmd/bd/reset.go`","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:54.318854+11:00","updated_at":"2025-12-13T10:13:32.611434+11:00","closed_at":"2025-12-13T09:59:41.72638+11:00","dependencies":[{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:54.319237+11:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr.1","type":"blocks","created_at":"2025-12-13T08:45:09.762138+11:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr.2","type":"blocks","created_at":"2025-12-13T08:45:09.817854+11:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr.3","type":"blocks","created_at":"2025-12-13T08:45:09.883658+11:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-aydr.5","title":"Enhance bd doctor to suggest reset for broken states","description":"Update bd doctor to detect severely broken states and suggest reset.\n\n## Detection Criteria\nSuggest reset when:\n- Multiple unfixable errors detected\n- Corrupted JSONL that can't be repaired\n- Schema version mismatch that can't be migrated\n- Daemon state inconsistent and unkillable\n\n## Implementation\nAdd to doctor's check/fix flow:\n```go\nif unfixableErrors \u003e threshold {\n suggest('State may be too broken to fix. Consider: bd reset')\n}\n```\n\n## Output Example\n```\nāœ— Found 5 unfixable errors\n \n Your beads state may be too corrupted to repair.\n Consider running 'bd reset' to start fresh.\n (Use 'bd reset --backup' to save current state first)\n```\n\n## Notes\n- Don't auto-run reset, just suggest\n- This is lower priority, can be done in parallel with main work","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-13T08:44:55.591986+11:00","updated_at":"2025-12-13T06:24:29.561624-08:00","closed_at":"2025-12-13T10:17:23.4522+11:00","dependencies":[{"issue_id":"bd-aydr.5","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:55.59239+11:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-aydr.6","title":"Add unit tests for reset package","description":"Comprehensive unit tests for internal/reset package.\n\n## Test Cases\n\n### ValidateState tests\n- .beads/ exists ā†’ success\n- .beads/ missing ā†’ appropriate error\n- git dirty state detection\n\n### CountImpact tests \n- Empty .beads/ ā†’ zero counts\n- With issues ā†’ correct count (open vs closed)\n- With tombstones ā†’ correct count\n- Returns HasUncommitted correctly\n\n### Backup tests\n- Creates backup with correct timestamp format\n- Preserves all files and permissions\n- Returns correct path\n- Handles missing .beads/ gracefully\n- Errors on pre-existing backup dir\n\n### Git operation tests\n- CheckGitState detects dirty, detached, not-a-repo\n- GitRemoveBeads removes correct files\n- GitCommitReset creates commit with message\n- Operations skip gracefully when not in git repo\n\n### Reset tests (with mocks/temp dirs)\n- Soft reset removes files, calls init\n- Hard reset includes git operations\n- Dry run doesn't modify anything\n- SkipInit flag prevents re-initialization\n- Daemon killall is called\n- Backup is created when requested\n\n## Approach\n- Can start with interface definitions (TDD style)\n- Use testify for assertions\n- Create temp directories for isolation\n- Mock git operations where needed\n- Test completion depends on implementation tasks\n\n## File Location\n`internal/reset/reset_test.go`\n`internal/reset/backup_test.go`\n`internal/reset/git_test.go`","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:57.01739+11:00","updated_at":"2025-12-13T10:13:32.611698+11:00","closed_at":"2025-12-13T09:59:20.820314+11:00","dependencies":[{"issue_id":"bd-aydr.6","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:57.017813+11:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-aydr.7","title":"Add integration tests for bd reset command","description":"End-to-end integration tests for the reset command.\n\n## Test Scenarios\n\n### Basic reset\n1. Init beads, create some issues\n2. Run bd reset --force\n3. Verify .beads/ is fresh, issues gone\n\n### Hard reset\n1. Init beads, create issues, commit\n2. Run bd reset --hard --force \n3. Verify git history has reset commits\n\n### Backup functionality\n1. Init beads, create issues\n2. Run bd reset --backup --force\n3. Verify backup exists with correct contents\n4. Verify main .beads/ is reset\n\n### Dry run\n1. Init beads, create issues\n2. Run bd reset --dry-run\n3. Verify nothing changed\n\n### Confirmation prompt\n1. Init beads\n2. Run bd reset (no --force)\n3. Verify prompts for confirmation\n4. Test both y and n responses\n\n## Location\ntests/integration/reset_test.go or similar","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:58.479282+11:00","updated_at":"2025-12-13T06:24:29.561908-08:00","closed_at":"2025-12-13T10:15:59.221637+11:00","dependencies":[{"issue_id":"bd-aydr.7","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:58.479686+11:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-aydr.7","depends_on_id":"bd-aydr.4","type":"blocks","created_at":"2025-12-13T08:45:11.15972+11:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-aydr.8","title":"Respond to GitHub issue #479 with solution","description":"Once bd reset is implemented and released, respond to GitHub issue #479.\n\n## Response should include\n- Announce the new bd reset command\n- Show basic usage examples\n- Link to any documentation\n- Thank the user for the feedback\n\n## Example response\n```\nThanks for raising this! We've added a `bd reset` command to handle this case.\n\nUsage:\n- `bd reset` - Reset to clean state (prompts for confirmation)\n- `bd reset --backup` - Create backup first\n- `bd reset --hard` - Also clean up git history\n\nThis is available in version X.Y.Z.\n```\n\n## Notes\n- Wait until feature is merged and released\n- Consider if issue should be closed or left for user confirmation","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-13T08:45:00.112351+11:00","updated_at":"2025-12-13T06:24:29.562177-08:00","closed_at":"2025-12-13T10:18:06.646796+11:00","dependencies":[{"issue_id":"bd-aydr.8","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:45:00.112732+11:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-aydr.8","depends_on_id":"bd-aydr.7","type":"blocks","created_at":"2025-12-13T08:45:12.640243+11:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-aydr.9","title":"Add .beads-backup-* pattern to gitignore template","description":"Update the gitignore template in doctor package to include backup directories.\n\n## Change\nAdd `.beads-backup-*/` to the GitignoreTemplate in `cmd/bd/doctor/gitignore.go`\n\n## Why\nBackup directories created by `bd reset --backup` should not be committed to git.\nThey are local-only recovery tools.\n\n## File\n`cmd/bd/doctor/gitignore.go` - look for GitignoreTemplate constant","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-13T08:49:42.453483+11:00","updated_at":"2025-12-13T09:16:44.201889+11:00","closed_at":"2025-12-13T09:16:44.201889+11:00","dependencies":[{"issue_id":"bd-aydr.9","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:49:42.453886+11:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-b3og","title":"Fix TestImportBugIntegration deadlock in importer_test.go","description":"Code health review found internal/importer/importer_test.go has TestImportBugIntegration skipped with:\n\nTODO: Test hangs due to database deadlock - needs investigation\n\nThis indicates a potential unresolved concurrency issue in the importer. The test has been skipped for an unknown duration.\n\nFix: Investigate the deadlock, fix the underlying issue, and re-enable the test.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T18:17:22.103838-08:00","updated_at":"2025-12-17T23:13:40.529671-08:00","closed_at":"2025-12-17T17:25:26.645901-08:00","dependencies":[{"issue_id":"bd-b3og","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.740642-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-b6xo","title":"Remove or fix ClearDirtyIssues() - race condition risk (bd-52)","description":"Code health review found internal/storage/sqlite/dirty.go still exposes old ClearDirtyIssues() method (lines 103-108) which clears ALL dirty issues without checking what was actually exported.\n\nData loss risk: If export fails after some issues written to JSONL but before ClearDirtyIssues called, changes to remaining dirty issues will be lost.\n\nThe safer ClearDirtyIssuesByID() (lines 113-132) exists and clears only exported issues.\n\nFix: Either remove old method or mark it deprecated and ensure no code paths use it.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T18:17:20.534625-08:00","updated_at":"2025-12-17T23:13:40.530703-08:00","closed_at":"2025-12-17T18:59:18.693791-08:00","dependencies":[{"issue_id":"bd-b6xo","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.633738-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-bgm","title":"Fix unparam unused parameter in cmd/bd/doctor.go:1879","description":"Linting issue: checkGitHooks - path is unused (unparam) at cmd/bd/doctor.go:1879:20. Error: func checkGitHooks(path string) doctorCheck {","status":"closed","priority":0,"issue_type":"bug","created_at":"2025-12-07T15:35:25.270293252-07:00","updated_at":"2025-12-17T23:13:40.532991-08:00","closed_at":"2025-12-17T16:46:11.026693-08:00"} -{"id":"bd-bgr","title":"Test stdin 2","description":"Description from stdin test\n","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T17:28:05.41434-08:00","updated_at":"2025-12-17T17:28:33.833288-08:00","closed_at":"2025-12-17T17:28:33.833288-08:00"} +{"id":"bd-aydr","title":"Add bd reset command for clean slate restart","description":"Implement a `bd reset` command to reset beads to a clean starting state.\n\n## Context\nGitHub issue #479 - users sometimes get beads into an invalid state after updates, and there's no clean way to start fresh. The git backup/restore mechanism that protects against accidental deletion also makes it hard to intentionally reset.\n\n## Design\n\n### Command Interface\n```\nbd reset [--hard] [--force] [--backup] [--dry-run] [--no-init]\n```\n\n| Flag | Effect |\n|------|--------|\n| `--hard` | Also remove from git index and commit |\n| `--force` | Skip confirmation prompt |\n| `--backup` | Create `.beads-backup-{timestamp}/` first |\n| `--dry-run` | Preview what would happen |\n| `--no-init` | Don't re-initialize after clearing |\n\n### Reset Levels\n1. **Soft Reset (default)** - Kill daemons, clear .beads/, re-init. Git history unchanged.\n2. **Hard Reset (`--hard`)** - Also git rm and commit the removal, then commit fresh state.\n\n### Implementation Flow\n1. Validate .beads/ exists\n2. If not --force: show impact summary, prompt confirmation\n3. If --backup: copy .beads/ to .beads-backup-{timestamp}/\n4. Kill daemons\n5. If --hard: git rm + commit\n6. rm -rf .beads/*\n7. If not --no-init: bd init (and git add+commit if --hard)\n8. Print summary\n\n### Safety Mechanisms\n- Confirmation prompt (skip with --force)\n- Impact summary (issue/tombstone counts)\n- Backup option\n- Dry-run preview\n- Git dirty check warning\n\n### Code Structure\n- `cmd/bd/reset.go` - CLI command\n- `internal/reset/` - Core logic package","status":"tombstone","priority":2,"issue_type":"epic","created_at":"2025-12-13T08:44:01.38379+11:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"epic"} +{"id":"bd-aydr.1","title":"Implement core reset package (internal/reset)","description":"Create the core reset logic in internal/reset/ package.\n\n## Responsibilities\n- ResetOptions struct with all flag options\n- CountImpact() - count issues/tombstones that will be deleted\n- ValidateState() - check .beads/ exists, check git dirty state\n- ExecuteReset() - main reset logic (without CLI concerns)\n- Integrate with daemon killall\n\n## Interface Design\n```go\ntype ResetOptions struct {\n Hard bool // Include git operations (git rm, commit)\n Backup bool // Create backup before reset\n DryRun bool // Preview only, don't execute\n SkipInit bool // Don't re-initialize after reset\n}\n\ntype ResetResult struct {\n IssuesDeleted int\n TombstonesDeleted int\n BackupPath string // if backup was created\n DaemonsKilled int\n}\n\ntype ImpactSummary struct {\n IssueCount int\n OpenCount int\n ClosedCount int\n TombstoneCount int\n HasUncommitted bool // git dirty state\n}\n\nfunc Reset(opts ResetOptions) (*ResetResult, error)\nfunc CountImpact() (*ImpactSummary, error)\nfunc ValidateState() error\n```\n\n## IMPORTANT: CLI vs Core Separation\n- `Force` (skip confirmation) is NOT in ResetOptions - that's a CLI concern\n- Core always executes when called; CLI decides whether to prompt first\n- Keep CLI-agnostic: no prompts, no colored output, no user interaction\n- Return errors for CLI to handle with user-friendly messages\n- Unit testable in isolation\n\n## Dependencies\n- Uses daemon.KillAllDaemons() from internal/daemon/\n- Calls bd init logic after reset (unless SkipInit)","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:50.145364+11:00","updated_at":"2025-12-25T01:21:01.952723-08:00","dependencies":[{"issue_id":"bd-aydr.1","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:50.145775+11:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-aydr.2","title":"Implement backup functionality for reset","description":"Add backup capability that can be used by reset command.\n\n## Functionality\n- Copy .beads/ to .beads-backup-{timestamp}/\n- Timestamp format: YYYYMMDD-HHMMSS\n- Preserve file permissions\n- Return backup path for user feedback\n\n## Location\n`internal/reset/backup.go` - keep with reset package for now (YAGNI)\n\n## Interface\n```go\nfunc CreateBackup(beadsDir string) (backupPath string, err error)\n```\n\n## Notes\n- Simple recursive file copy, no compression needed\n- Error if backup dir already exists (unlikely with timestamp)\n- Backup directories SHOULD be gitignored\n- Add `.beads-backup-*/` pattern to .beads/.gitignore template in doctor package\n- Consider: ListBackups() for future `bd backup list` command (not for this PR)","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:51.306103+11:00","updated_at":"2025-12-25T01:21:01.952723-08:00","dependencies":[{"issue_id":"bd-aydr.2","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:51.306474+11:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-aydr.3","title":"Add git operations for --hard reset","description":"Implement git integration for hard reset mode.\n\n## Operations Needed\n1. `git rm -rf .beads/*.jsonl` - remove data files from index\n2. `git commit -m 'beads: reset to clean state'` - commit removal\n3. After re-init: `git add .beads/` and commit fresh state\n\n## Edge Cases to Handle\n- Uncommitted changes in .beads/ - warn or error\n- Detached HEAD state - warn, maybe block\n- Git not initialized - skip git ops, warn\n- Git operations fail mid-way - clear error messaging\n\n## Interface\n```go\ntype GitState struct {\n IsRepo bool\n IsDirty bool // uncommitted changes in .beads/\n IsDetached bool // detached HEAD\n Branch string // current branch name\n}\n\nfunc CheckGitState(beadsDir string) (*GitState, error)\nfunc GitRemoveBeads(beadsDir string) error\nfunc GitCommitReset(message string) error\nfunc GitAddAndCommit(beadsDir, message string) error\n```\n\n## Location\n`internal/reset/git.go` - keep with reset package for now\n\nNote: Codebase has no central git package. internal/compact/git.go is compact-specific.\nFuture refactoring could extract shared git utilities, but YAGNI for now.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:52.798312+11:00","updated_at":"2025-12-25T01:21:01.952723-08:00","dependencies":[{"issue_id":"bd-aydr.3","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:52.798715+11:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-aydr.4","title":"Implement CLI command (cmd/bd/reset.go)","description":"Wire up the reset command with Cobra CLI.\n\n## Responsibilities\n- Define command and all flags\n- User confirmation prompt (unless --force)\n- Display impact summary before confirmation\n- Colored output and progress indicators\n- Call core reset package\n- Handle errors with user-friendly messages\n- Register command with rootCmd in init()\n\n## Flags\n```go\n--hard bool \"Also remove from git and commit\"\n--force bool \"Skip confirmation prompt\"\n--backup bool \"Create backup before reset\"\n--dry-run bool \"Preview what would happen\"\n--skip-init bool \"Do not re-initialize after reset\"\n--verbose bool \"Show detailed progress output\"\n```\n\n## Output Format\n```\nāš ļø This will reset beads to a clean state.\n\nWill be deleted:\n ā€¢ 47 issues (23 open, 24 closed)\n ā€¢ 12 tombstones\n\nContinue? [y/N] y\n\nā†’ Stopping daemons... āœ“\nā†’ Removing .beads/... āœ“\nā†’ Initializing fresh... āœ“\n\nāœ“ Reset complete. Run 'bd onboard' to set up hooks.\n```\n\n## Implementation Notes\n- Confirmation logic lives HERE, not in core package\n- Use color package (github.com/fatih/color) for output\n- Follow patterns from other commands (init.go, doctor.go)\n- Add to rootCmd in init() function\n\n## File Location\n`cmd/bd/reset.go`","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:54.318854+11:00","updated_at":"2025-12-25T01:21:01.952723-08:00","dependencies":[{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:54.319237+11:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr.1","type":"blocks","created_at":"2025-12-13T08:45:09.762138+11:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr.2","type":"blocks","created_at":"2025-12-13T08:45:09.817854+11:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr.3","type":"blocks","created_at":"2025-12-13T08:45:09.883658+11:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-aydr.5","title":"Enhance bd doctor to suggest reset for broken states","description":"Update bd doctor to detect severely broken states and suggest reset.\n\n## Detection Criteria\nSuggest reset when:\n- Multiple unfixable errors detected\n- Corrupted JSONL that can't be repaired\n- Schema version mismatch that can't be migrated\n- Daemon state inconsistent and unkillable\n\n## Implementation\nAdd to doctor's check/fix flow:\n```go\nif unfixableErrors \u003e threshold {\n suggest('State may be too broken to fix. Consider: bd reset')\n}\n```\n\n## Output Example\n```\nāœ— Found 5 unfixable errors\n \n Your beads state may be too corrupted to repair.\n Consider running 'bd reset' to start fresh.\n (Use 'bd reset --backup' to save current state first)\n```\n\n## Notes\n- Don't auto-run reset, just suggest\n- This is lower priority, can be done in parallel with main work","status":"tombstone","priority":3,"issue_type":"task","created_at":"2025-12-13T08:44:55.591986+11:00","updated_at":"2025-12-25T01:21:01.952723-08:00","dependencies":[{"issue_id":"bd-aydr.5","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:55.59239+11:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-aydr.6","title":"Add unit tests for reset package","description":"Comprehensive unit tests for internal/reset package.\n\n## Test Cases\n\n### ValidateState tests\n- .beads/ exists ā†’ success\n- .beads/ missing ā†’ appropriate error\n- git dirty state detection\n\n### CountImpact tests \n- Empty .beads/ ā†’ zero counts\n- With issues ā†’ correct count (open vs closed)\n- With tombstones ā†’ correct count\n- Returns HasUncommitted correctly\n\n### Backup tests\n- Creates backup with correct timestamp format\n- Preserves all files and permissions\n- Returns correct path\n- Handles missing .beads/ gracefully\n- Errors on pre-existing backup dir\n\n### Git operation tests\n- CheckGitState detects dirty, detached, not-a-repo\n- GitRemoveBeads removes correct files\n- GitCommitReset creates commit with message\n- Operations skip gracefully when not in git repo\n\n### Reset tests (with mocks/temp dirs)\n- Soft reset removes files, calls init\n- Hard reset includes git operations\n- Dry run doesn't modify anything\n- SkipInit flag prevents re-initialization\n- Daemon killall is called\n- Backup is created when requested\n\n## Approach\n- Can start with interface definitions (TDD style)\n- Use testify for assertions\n- Create temp directories for isolation\n- Mock git operations where needed\n- Test completion depends on implementation tasks\n\n## File Location\n`internal/reset/reset_test.go`\n`internal/reset/backup_test.go`\n`internal/reset/git_test.go`","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:57.01739+11:00","updated_at":"2025-12-25T01:21:01.952723-08:00","dependencies":[{"issue_id":"bd-aydr.6","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:57.017813+11:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-aydr.7","title":"Add integration tests for bd reset command","description":"End-to-end integration tests for the reset command.\n\n## Test Scenarios\n\n### Basic reset\n1. Init beads, create some issues\n2. Run bd reset --force\n3. Verify .beads/ is fresh, issues gone\n\n### Hard reset\n1. Init beads, create issues, commit\n2. Run bd reset --hard --force \n3. Verify git history has reset commits\n\n### Backup functionality\n1. Init beads, create issues\n2. Run bd reset --backup --force\n3. Verify backup exists with correct contents\n4. Verify main .beads/ is reset\n\n### Dry run\n1. Init beads, create issues\n2. Run bd reset --dry-run\n3. Verify nothing changed\n\n### Confirmation prompt\n1. Init beads\n2. Run bd reset (no --force)\n3. Verify prompts for confirmation\n4. Test both y and n responses\n\n## Location\ntests/integration/reset_test.go or similar","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:58.479282+11:00","updated_at":"2025-12-25T01:21:01.952723-08:00","dependencies":[{"issue_id":"bd-aydr.7","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:58.479686+11:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-aydr.7","depends_on_id":"bd-aydr.4","type":"blocks","created_at":"2025-12-13T08:45:11.15972+11:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-aydr.8","title":"Respond to GitHub issue #479 with solution","description":"Once bd reset is implemented and released, respond to GitHub issue #479.\n\n## Response should include\n- Announce the new bd reset command\n- Show basic usage examples\n- Link to any documentation\n- Thank the user for the feedback\n\n## Example response\n```\nThanks for raising this! We've added a `bd reset` command to handle this case.\n\nUsage:\n- `bd reset` - Reset to clean state (prompts for confirmation)\n- `bd reset --backup` - Create backup first\n- `bd reset --hard` - Also clean up git history\n\nThis is available in version X.Y.Z.\n```\n\n## Notes\n- Wait until feature is merged and released\n- Consider if issue should be closed or left for user confirmation","status":"tombstone","priority":3,"issue_type":"task","created_at":"2025-12-13T08:45:00.112351+11:00","updated_at":"2025-12-25T01:21:01.952723-08:00","dependencies":[{"issue_id":"bd-aydr.8","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:45:00.112732+11:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-aydr.8","depends_on_id":"bd-aydr.7","type":"blocks","created_at":"2025-12-13T08:45:12.640243+11:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-aydr.9","title":"Add .beads-backup-* pattern to gitignore template","description":"Update the gitignore template in doctor package to include backup directories.\n\n## Change\nAdd `.beads-backup-*/` to the GitignoreTemplate in `cmd/bd/doctor/gitignore.go`\n\n## Why\nBackup directories created by `bd reset --backup` should not be committed to git.\nThey are local-only recovery tools.\n\n## File\n`cmd/bd/doctor/gitignore.go` - look for GitignoreTemplate constant","status":"tombstone","priority":3,"issue_type":"task","created_at":"2025-12-13T08:49:42.453483+11:00","updated_at":"2025-12-25T01:21:01.952723-08:00","dependencies":[{"issue_id":"bd-aydr.9","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:49:42.453886+11:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-b3og","title":"Fix TestImportBugIntegration deadlock in importer_test.go","description":"Code health review found internal/importer/importer_test.go has TestImportBugIntegration skipped with:\n\nTODO: Test hangs due to database deadlock - needs investigation\n\nThis indicates a potential unresolved concurrency issue in the importer. The test has been skipped for an unknown duration.\n\nFix: Investigate the deadlock, fix the underlying issue, and re-enable the test.","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T18:17:22.103838-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","dependencies":[{"issue_id":"bd-b3og","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.740642-08:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-b6xo","title":"Remove or fix ClearDirtyIssues() - race condition risk (bd-52)","description":"Code health review found internal/storage/sqlite/dirty.go still exposes old ClearDirtyIssues() method (lines 103-108) which clears ALL dirty issues without checking what was actually exported.\n\nData loss risk: If export fails after some issues written to JSONL but before ClearDirtyIssues called, changes to remaining dirty issues will be lost.\n\nThe safer ClearDirtyIssuesByID() (lines 113-132) exists and clears only exported issues.\n\nFix: Either remove old method or mark it deprecated and ensure no code paths use it.","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T18:17:20.534625-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","dependencies":[{"issue_id":"bd-b6xo","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.633738-08:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-bgm","title":"Fix unparam unused parameter in cmd/bd/doctor.go:1879","description":"Linting issue: checkGitHooks - path is unused (unparam) at cmd/bd/doctor.go:1879:20. Error: func checkGitHooks(path string) doctorCheck {","status":"tombstone","priority":0,"issue_type":"bug","created_at":"2025-12-07T15:35:25.270293252-07:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-bgr","title":"Test stdin 2","description":"Description from stdin test\n","status":"tombstone","priority":4,"issue_type":"task","created_at":"2025-12-17T17:28:05.41434-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-bha9","title":"Add missing updated_at index on issues table","description":"GetStaleIssues queries filter by updated_at but there's no index on this column.\n\n**Current query (ready.go:253-254):**\n```sql\nWHERE status != 'closed'\n AND datetime(updated_at) \u003c datetime('now', '-' || ? || ' days')\n```\n\n**Problem:** Full table scan when filtering stale issues.\n\n**Solution:** Add migration to create:\n```sql\nCREATE INDEX IF NOT EXISTS idx_issues_updated_at ON issues(updated_at);\n```\n\n**Note:** The datetime() function wrapper may prevent index usage. Consider also storing updated_at as INTEGER (unix timestamp) for better index efficiency, or test if SQLite can use the index despite the function.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-22T22:58:49.166051-08:00","updated_at":"2025-12-22T23:15:13.837078-08:00","closed_at":"2025-12-22T23:15:13.837078-08:00","close_reason":"Implemented in migration 026_additional_indexes.go","dependencies":[{"issue_id":"bd-bha9","depends_on_id":"bd-h0we","type":"discovered-from","created_at":"2025-12-22T22:58:49.166949-08:00","created_by":"daemon"}]} {"id":"bd-bhg7","title":"Merge: bd-io8c","description":"branch: polecat/Syncer\ntarget: main\nsource_issue: bd-io8c\nrig: beads","status":"closed","priority":1,"issue_type":"merge-request","created_at":"2025-12-23T13:46:46.954667-08:00","updated_at":"2025-12-23T19:12:08.34433-08:00","closed_at":"2025-12-23T19:12:08.34433-08:00","close_reason":"Stale merge-requests from orphaned polecat branches - refinery not processing"} {"id":"bd-bijf","title":"Merge: bd-l13p","description":"branch: polecat/nux\ntarget: main\nsource_issue: bd-l13p\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-23T16:41:32.467246-08:00","updated_at":"2025-12-23T19:12:08.348252-08:00","closed_at":"2025-12-23T19:12:08.348252-08:00","close_reason":"Stale merge-requests from orphaned polecat branches - refinery not processing"} {"id":"bd-bivq","title":"Merge: bd-9usz","description":"branch: polecat/slit\ntarget: main\nsource_issue: bd-9usz\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-23T20:42:19.995419-08:00","updated_at":"2025-12-23T21:21:57.700579-08:00","closed_at":"2025-12-23T21:21:57.700579-08:00","close_reason":"stale - no code pushed"} {"id":"bd-bkul","title":"Simplify wisp architecture: single DB with ephemeral flag","description":"\n## Problem\n\nThe current wisp architecture uses a separate .beads-wisp/ directory with its own database. This creates unnecessary complexity:\n\n- Separate directory structure and database initialization\n- Parallel routing logic in both beads and gastown\n- Merge queries from two stores for inbox/list operations\n- All this for what is essentially a boolean flag\n\n## Current State\n\nGastown mail code has to:\n- resolveWispDir() vs resolveBeadsDir()\n- Query both, merge results\n- Route deletes to correct store\n\n## Proposed Solution\n\nSingle database with an ephemeral boolean field on Issue. Behavior:\n- bd create --ephemeral sets the flag\n- JSONL export SKIPS ephemeral issues (they never sync)\n- bd list shows all by default, --ephemeral / --persistent filters\n- bd mol squash clears the flag (promotes to permanent, now exports)\n- bd wisp gc deletes old ephemeral issues from the db\n- No separate directory, no separate routing\n\n## Migration\n\n1. Update beads to support ephemeral flag in main db\n2. Update bd wisp commands to work with flag instead of separate dir\n3. Update gastown mail to use simple --ephemeral flag (remove all dual-routing)\n4. Deprecate .beads-wisp/ directory pattern\n\n## Acceptance Criteria\n\n- Single database for all issues (ephemeral and persistent)\n- ephemeral field on Issue type\n- JSONL export skips ephemeral issues\n- bd create --ephemeral works\n- bd mol squash promotes ephemeral to persistent\n- Gastown mail uses simple flag, no dual-routing\n","status":"closed","priority":0,"issue_type":"feature","created_at":"2025-12-24T20:06:27.980055-08:00","updated_at":"2025-12-24T20:43:07.065124-08:00","closed_at":"2025-12-24T20:43:07.065124-08:00","close_reason":"Implemented: single DB with Wisp flag, deprecated wisp storage functions"} {"id":"bd-bqcc","title":"Consolidate maintenance commands into bd doctor --fix","description":"Per rsnodgrass in GH#692:\n\u003e \"The biggest improvement to beads from an ergonomics perspective would be to prune down commands. We have a lot of 'maintenance' commands that probably should just be folded into 'bd doctor --fix' automatically.\"\n\nCurrent maintenance commands that could be consolidated:\n- clean - Clean up temporary git merge artifacts\n- cleanup - Delete closed issues and prune expired tombstones\n- compact - Compact old closed issues\n- detect-pollution - Detect and clean test issues\n- migrate-* (5 commands) - Various migration utilities\n- repair-deps - Fix orphaned dependency references\n- validate - Database health checks\n\nProposal:\n1. Make `bd doctor` the single entry point for health checks\n2. Add `bd doctor --fix` to auto-fix common issues\n3. Deprecate (but keep working) individual commands\n4. Add `bd doctor --all` for comprehensive maintenance\n\nThis would reduce cognitive load for users - they just need to remember 'bd doctor'.\n\nNote: This is higher impact but also higher risk - needs careful design to avoid breaking existing workflows.","status":"closed","priority":2,"issue_type":"feature","assignee":"beads/capable","created_at":"2025-12-22T14:27:31.466556-08:00","updated_at":"2025-12-23T01:33:25.732363-08:00","closed_at":"2025-12-23T01:33:25.732363-08:00","close_reason":"Merged to main"} -{"id":"bd-bw6","title":"Fix G104 errors unhandled in internal/storage/sqlite/queries.go:1181","description":"Linting issue: G104: Errors unhandled (gosec) at internal/storage/sqlite/queries.go:1181:4. Error: rows.Close()","status":"closed","priority":0,"issue_type":"bug","created_at":"2025-12-07T15:35:09.008444133-07:00","updated_at":"2025-12-17T23:13:40.536627-08:00","closed_at":"2025-12-17T16:46:11.029355-08:00"} +{"id":"bd-bw6","title":"Fix G104 errors unhandled in internal/storage/sqlite/queries.go:1181","description":"Linting issue: G104: Errors unhandled (gosec) at internal/storage/sqlite/queries.go:1181:4. Error: rows.Close()","status":"tombstone","priority":0,"issue_type":"bug","created_at":"2025-12-07T15:35:09.008444133-07:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-bwk2","title":"Centralize error handling patterns in storage layer","description":"80+ instances of inconsistent error handling across sqlite.go with mix of %w, %v, and no wrapping.\n\nLocation: internal/storage/sqlite/sqlite.go (throughout)\n\nProblem:\n- Some use fmt.Errorf(\"op failed: %w\", err) - correct wrapping\n- Some use fmt.Errorf(\"op failed: %v\", err) - loses error chain\n- Some return err directly - no context\n- Hard to debug production issues\n- Can't distinguish error types\n\nSolution: Create internal/storage/sqlite/errors.go:\n- Define sentinel errors (ErrNotFound, ErrInvalidID, etc.)\n- Create wrapDBError(op string, err error) helper\n- Convert sql.ErrNoRows to ErrNotFound\n- Always wrap with operation context\n\nImpact: Lost error context; inconsistent messages; hard to debug\n\nEffort: 5-7 hours","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-16T14:51:54.974909-08:00","updated_at":"2025-12-21T21:44:37.237175-08:00","closed_at":"2025-12-21T21:44:37.237175-08:00","close_reason":"Already implemented: errors.go exists with sentinel errors (ErrNotFound, ErrInvalidID, ErrConflict, ErrCycle), wrapDBError/wrapDBErrorf helpers that convert sql.ErrNoRows to ErrNotFound, and IsNotFound/IsConflict/IsCycle checkers. 41 uses of wrapDBError, 347 uses of proper %w wrapping, 0 uses of %v. Added one minor fix to CheckpointWAL."} {"id":"bd-bxha","title":"Default to YES for git hooks and merge driver installation","description":"Currently bd init prompts user to install git hooks and merge driver, but setup is incomplete if user declines. Change to install by default unless --skip-hooks or --skip-merge-driver flags are passed. Better safe defaults. If installation fails, warn user and suggest bd doctor --fix.","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-11-21T23:16:10.172238-08:00","updated_at":"2025-12-23T04:20:51.885765-08:00","closed_at":"2025-12-23T04:20:51.885765-08:00","close_reason":"Already implemented in commits ec4117d0 and 3a36d0b9 - hooks/merge driver install by default, doctor runs at end of init","dependencies":[{"issue_id":"bd-bxha","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:10.173034-08:00","created_by":"daemon","metadata":"{}"}]} {"id":"bd-by0d","title":"Work on beads-ldv: Fix bd graph crashes with nil pointer ...","description":"Work on beads-ldv: Fix bd graph crashes with nil pointer dereference (GH#657). Fix nil pointer in computeDependencyCounts at graph.go:428. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:27.829359-08:00","updated_at":"2025-12-19T23:28:32.428314-08:00","closed_at":"2025-12-19T23:20:49.038441-08:00","close_reason":"Fixed nil pointer in computeDependencyCounts by passing subgraph instead of nil"} {"id":"bd-c2xs","title":"Exclude pinned issues from bd blocked","description":"Update bd blocked to exclude pinned issues. Pinned issues are context markers and should not appear in the blocked work list.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:44.684242-08:00","updated_at":"2025-12-21T11:29:42.179389-08:00","closed_at":"2025-12-21T11:29:42.179389-08:00","close_reason":"Already implemented in SQLite (line 299) and memory (line 1084). Pinned issues excluded from blocked.","dependencies":[{"issue_id":"bd-c2xs","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.521323-08:00","created_by":"daemon"},{"issue_id":"bd-c2xs","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.736681-08:00","created_by":"daemon"}]} -{"id":"bd-c3u","title":"Review PR #512: clarify bd ready docs","description":"Review and merge PR #512 from aspiers. This PR clarifies what bd ready does after git pull in README.md. Simple 1-line change. URL: https://github.com/anthropics/beads/pull/512","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:15:13.405161+11:00","updated_at":"2025-12-13T07:07:29.641265-08:00","closed_at":"2025-12-13T07:07:29.641265-08:00"} +{"id":"bd-c3u","title":"Review PR #512: clarify bd ready docs","description":"Review and merge PR #512 from aspiers. This PR clarifies what bd ready does after git pull in README.md. Simple 1-line change. URL: https://github.com/anthropics/beads/pull/512","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-13T08:15:13.405161+11:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-c7y5","title":"Optimization: Tombstones still synced, adding overhead","description":"Tombstoned (deleted) issues are still processed during sync, adding overhead.\n\n## Evidence\n```\nImport complete: 0 created, 0 updated, 407 unchanged, 100 skipped\n```\nThose 100 skipped are tombstones - they're read from JSONL, parsed, then filtered out.\n\n## Current State (Beads repo)\n- 408 total issues\n- 99 tombstones (24% of database)\n- Every sync reads and skips these 99 entries\n\n## Impact\n- Sync time increases with tombstone count\n- JSONL file size grows indefinitely\n- Git history accumulates tombstone churn\n\n## Proposed Solutions\n\n### 1. JSONL Compaction (`bd compact`)\nPeriodically rewrite JSONL without tombstones:\n```bash\nbd compact # Removes tombstones, rewrites issues.jsonl\n```\nTrade-off: Loses delete history, but that's in git anyway.\n\n### 2. Tombstone TTL\nAuto-remove tombstones older than N days during sync:\n```go\nif issue.Deleted \u0026\u0026 time.Since(issue.UpdatedAt) \u003e 7*24*time.Hour {\n // Skip writing to new JSONL\n}\n```\n\n### 3. Archive File\nMove old closed issues to `issues-archive.jsonl`:\n- Not synced regularly\n- Available for historical queries\n- Main JSONL stays small\n\n### 4. Lazy Tombstone Handling \nDon't write tombstones to JSONL at all - just remove the line:\n- Simpler, but loses cross-clone delete propagation\n- Would need different delete propagation mechanism\n\n## Recommendation\nStart with `bd compact` command - simple, explicit, user-controlled.\n\n## Related\n- gt-tnss: Analysis - Beads database size and hygiene strategy\n- gt-ox67: Maintenance - Regular cleanup of closed MR/gate beads","status":"closed","priority":2,"issue_type":"task","assignee":"beads/dag","created_at":"2025-12-23T14:41:16.925212-08:00","updated_at":"2025-12-23T23:50:23.363222-08:00","closed_at":"2025-12-23T23:50:23.363222-08:00","close_reason":"Added bd compact --prune mode for standalone tombstone pruning"} -{"id":"bd-c83r","title":"Prevent multiple daemons from running on the same repo","description":"Multiple bd daemons running on the same repo clone causes race conditions and data corruption risks.\n\n**Problem:**\n- Nothing prevents spawning multiple daemons for the same repository\n- Multiple daemons watching the same files can conflict during sync operations\n- Observed: 4 daemons running simultaneously caused sync race condition\n\n**Solution:**\nImplement daemon singleton enforcement per repo:\n1. Use a lock file (e.g., .beads/.daemon.lock) with PID\n2. On daemon start, check if lock exists and process is alive\n3. If stale lock (dead PID), clean up and acquire lock\n4. If active daemon exists, either:\n - Exit with message 'daemon already running (PID xxx)'\n - Or offer --replace flag to kill existing and take over\n5. Release lock on graceful shutdown\n\n**Edge cases to handle:**\n- Daemon crashes without releasing lock (stale PID detection)\n- Multiple repos in same directory tree (each repo gets own lock)\n- Race between two daemons starting simultaneously (atomic lock acquisition)","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-13T06:37:23.377131-08:00","updated_at":"2025-12-16T01:14:49.50347-08:00","closed_at":"2025-12-14T17:34:14.990077-08:00"} +{"id":"bd-c83r","title":"Prevent multiple daemons from running on the same repo","description":"Multiple bd daemons running on the same repo clone causes race conditions and data corruption risks.\n\n**Problem:**\n- Nothing prevents spawning multiple daemons for the same repository\n- Multiple daemons watching the same files can conflict during sync operations\n- Observed: 4 daemons running simultaneously caused sync race condition\n\n**Solution:**\nImplement daemon singleton enforcement per repo:\n1. Use a lock file (e.g., .beads/.daemon.lock) with PID\n2. On daemon start, check if lock exists and process is alive\n3. If stale lock (dead PID), clean up and acquire lock\n4. If active daemon exists, either:\n - Exit with message 'daemon already running (PID xxx)'\n - Or offer --replace flag to kill existing and take over\n5. Release lock on graceful shutdown\n\n**Edge cases to handle:**\n- Daemon crashes without releasing lock (stale PID detection)\n- Multiple repos in same directory tree (each repo gets own lock)\n- Race between two daemons starting simultaneously (atomic lock acquisition)","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-13T06:37:23.377131-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-c8d5","title":"bd mol run: Only creates partial children from proto","description":"When running `bd mol run gt-lwuu --var issue=gt-xxx`, only 2 of 4 proto children are created.\n\n## Expected\nProto gt-lwuu has 4 children:\n- gt-lwuu.1: load-context\n- gt-lwuu.2: implement \n- gt-lwuu.3: self-review\n- gt-lwuu.8: request-shutdown\n\nAll 4 should be instantiated.\n\n## Actual\nOnly 2 children created:\n- load-context\n- implement\n\nself-review and request-shutdown are missing.\n\n## Repro\n```bash\nbd --no-daemon mol run gt-lwuu --var issue=gt-xxx --json\nbd list --parent=\u003ccreated-id\u003e # Only shows 2 children\n```\n\n## Impact\nPolecats spawned with mol-polecat-work get incomplete workflow.","status":"closed","priority":1,"issue_type":"bug","assignee":"beads/dave","created_at":"2025-12-24T23:12:47.923073-08:00","updated_at":"2025-12-24T23:32:20.612316-08:00","closed_at":"2025-12-24T23:32:20.612316-08:00","close_reason":"Fixed"} {"id":"bd-cb64c226.1","title":"Performance Validation","description":"Confirm no performance regression from cache removal","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T10:50:15.126019-07:00","updated_at":"2025-12-17T23:18:29.108883-08:00","close_reason":"Closed","deleted_at":"2025-12-17T23:18:29.108883-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} {"id":"bd-cb64c226.10","title":"Delete server_cache_storage.go","description":"Remove the entire cache implementation file (~286 lines)","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:38.729299-07:00","updated_at":"2025-12-17T23:18:29.110716-08:00","close_reason":"Closed","deleted_at":"2025-12-17T23:18:29.110716-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} @@ -216,7 +216,7 @@ {"id":"bd-czss","title":"Update CHANGELOG.md with release notes","description":"Add meaningful release notes to CHANGELOG.md describing what changed in {{version}}","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:55:59.909641-08:00","updated_at":"2025-12-20T17:59:26.262153-08:00","closed_at":"2025-12-20T01:23:51.407302-08:00","dependencies":[{"issue_id":"bd-czss","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:14.862724-08:00","created_by":"daemon"},{"issue_id":"bd-czss","depends_on_id":"bd-qkw9","type":"blocks","created_at":"2025-12-19T22:56:23.145894-08:00","created_by":"daemon"}]} {"id":"bd-d148","title":"GH#483: Pre-commit hook fails unnecessarily when .beads removed","description":"Pre-commit hook fails on bd sync when .beads directory exists but user is on branch without beads. Should exit gracefully. See GitHub issue #483.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:40.049785-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-d28c","title":"Test createTombstone and deleteIssue wrappers","description":"Add tests for the createTombstone and deleteIssue wrapper functions in cmd/bd/delete.go.\n\n## Functions under test\n- createTombstone (cmd/bd/delete.go:335) - Wrapper around SQLite CreateTombstone\n- deleteIssue (cmd/bd/delete.go:349) - Wrapper around SQLite DeleteIssue\n\n## Test scenarios for createTombstone\n1. Successful tombstone creation\n2. Tombstone with reason and actor tracking\n3. Error when issue doesn't exist\n4. Verify tombstone status set correctly\n5. Verify audit trail recorded\n6. Rollback/error handling\n\n## Test scenarios for deleteIssue\n1. Successful issue deletion\n2. Error on non-existent issue\n3. Verify issue removed from database\n4. Error handling when storage backend doesn't support delete\n\n## Coverage target\nCurrent: 0%\nTarget: \u003e85%\n\n## Related\n- Parent epic: bd-kyll\n- Original issue: bd-7z4","status":"closed","priority":1,"issue_type":"task","assignee":"beads/testcat","created_at":"2025-12-18T13:08:37.669214532-07:00","updated_at":"2025-12-23T21:44:33.169062-08:00","closed_at":"2025-12-23T21:44:33.169062-08:00","close_reason":"Tests merged from polecat/testcat branch and verified passing. 9 test cases added for createTombstone and deleteIssue wrappers.","dependencies":[{"issue_id":"bd-d28c","depends_on_id":"bd-kyll","type":"parent-child","created_at":"2025-12-18T13:08:37.70588226-07:00","created_by":"mhwilkie"}]} -{"id":"bd-d3e5","title":"Test issue 2","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-14T11:21:13.878680387-07:00","updated_at":"2025-12-14T11:21:13.878680387-07:00","closed_at":"2025-12-14T00:32:13.890274-08:00"} +{"id":"bd-d3e5","title":"Test issue 2","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-14T11:21:13.878680387-07:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-d4jl","title":"Commit and push release","description":"git add -A \u0026\u0026 git commit -m 'chore: bump version to 0.32.1' \u0026\u0026 git push","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:21.928138-08:00","updated_at":"2025-12-20T21:57:12.81943-08:00","closed_at":"2025-12-20T21:57:12.81943-08:00","close_reason":"Committed and pushed to origin","dependencies":[{"issue_id":"bd-d4jl","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:21.930015-08:00","created_by":"daemon"},{"issue_id":"bd-d4jl","depends_on_id":"bd-tj00","type":"blocks","created_at":"2025-12-20T21:53:29.884457-08:00","created_by":"daemon"}]} {"id":"bd-d73u","title":"Re: Thread Test 2","description":"Great! Thread is working well.","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:46.655093-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-d73u","depends_on_id":"bd-vpan","type":"replies-to","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} {"id":"bd-d9mu","title":"Cross-rig external dependency support","description":"Support dependencies on issues in other rigs/repos.\n\n## Use Case\n\nGas Town issues often depend on Beads issues (and vice versa). Currently we use labels like `external:beads/bd-xxx` as documentation, but:\n- `bd blocked` doesn't recognize external deps\n- `bd ready` doesn't filter them out\n- No way to query cross-rig status\n\n## Proposed UX\n\n### Adding external deps\n```bash\n# New syntax for bd dep add\nbd dep add gt-a07f external:beads:bd-kwjh\n\n# Or maybe cleaner\nbd dep add gt-a07f --external beads:bd-kwjh\n```\n\n### Showing blocked status\n```bash\nbd blocked\n# ā†’ gt-a07f blocked by external:beads:bd-kwjh (unverified)\n\n# With optional cross-rig query\nbd blocked --resolve-external\n# ā†’ gt-a07f blocked by external:beads:bd-kwjh (closed) ā† unblocked!\n```\n\n### Storage\nCould use:\n- Special dependency type: `type: external`\n- Label convention: `external:rig:id`\n- New field: `external_deps: [\"beads:bd-kwjh\"]`\n\n## Implementation Notes\n\nCross-rig queries would need:\n- Known rig locations (config or discovery)\n- Read-only beads access to external rigs\n- Caching to avoid repeated queries\n\nFor MVP, just recognizing external deps and marking them as 'unverified' blockers would be valuable.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-22T02:27:23.892706-08:00","updated_at":"2025-12-22T22:32:49.261551-08:00","closed_at":"2025-12-22T22:32:49.261551-08:00","close_reason":"Superseded: Cross-rig external dependency support was fully implemented through child issues: bd-om4a (external: prefix syntax), bd-zmmy (bd ready resolution), bd-396j (bd blocked filtering), bd-66w1 (external_projects config), bd-vks2 (dep tree display), bd-mv6h (test coverage). External deps are auto-resolved when external_projects config is set. The --resolve-external flag is not needed."} @@ -227,13 +227,13 @@ {"id":"bd-drcx","title":"bd mol run: Support proto lookup by title","description":"`bd mol run` only accepts proto ID (e.g., gt-lwuu), not proto title (e.g., mol-polecat-work).\n\n## Current Behavior\n```bash\nbd mol run mol-polecat-work --var issue=gt-xxx\n# Error: no issue found matching \"mol-polecat-work\"\n\nbd mol run gt-lwuu --var issue=gt-xxx \n# Works\n```\n\n## Desired Behavior\nBoth should work - lookup by ID or by title.\n\n## Why This Matters\n- Proto titles are human-readable and memorable\n- Proto IDs are opaque (gt-lwuu vs mol-polecat-work)\n- Hardcoding IDs in code is fragile (IDs change across databases)\n- `bd mol catalog` shows both: `gt-lwuu: mol-polecat-work`\n\n## Workaround\nCurrently using hardcoded proto ID in gt spawn, which is brittle.","status":"closed","priority":2,"issue_type":"feature","assignee":"beads/dave","created_at":"2025-12-24T23:12:49.151242-08:00","updated_at":"2025-12-24T23:32:20.615624-08:00","closed_at":"2025-12-24T23:32:20.615624-08:00","close_reason":"Fixed"} {"id":"bd-drxs","title":"Make merge requests ephemeral wisps instead of permanent issues","description":"## Problem\n\nMerge requests (MRs) are currently created as regular beads issues (type: merge-request). This means they:\n- Sync to JSONL and propagate via git\n- Accumulate in the issue database indefinitely\n- Clutter `bd list` output with closed MRs\n- Create permanent records for inherently transient artifacts\n\nMRs are process artifacts, not work products. They exist briefly while code awaits merge, then their purpose is fulfilled. The git merge commit and GitHub PR (if applicable) provide the permanent audit trail - the beads MR is redundant.\n\n## Proposed Solution\n\nMake MRs ephemeral wisps that exist only during the merge process:\n\n1. **Create MRs as wisps**: When a polecat completes work and requests merge, create the MR in `.beads-wisp/` instead of `.beads/`\n\n2. **Refinery visibility**: This works because all clones within a rig share the same database:\n ```\n beads/ ā† Rig root\n ā”œā”€ā”€ .beads/ ā† Permanent issues (synced to JSONL)\n ā”œā”€ā”€ .beads-wisp/ ā† Ephemeral wisps (NOT synced)\n ā”œā”€ā”€ crew/dave/ ā† Uses rig's shared DB\n ā”œā”€ā”€ polecats/*/ ā† Uses rig's shared DB\n ā””ā”€ā”€ refinery/ ā† Uses rig's shared DB\n ```\n The refinery can see wisp MRs immediately - same SQLite database.\n\n3. **On merge completion**: Burn the wisp (delete without digest). The git merge commit IS the permanent record. No digest needed since:\n - Digest wouldn't be smaller than the MR itself (~200-300 bytes either way)\n - Git history provides complete audit trail\n - GitHub PR (if used) provides discussion/approval record\n\n4. **On merge rejection/abandonment**: Burn the wisp. Optionally notify the source polecat via mail.\n\n## Benefits\n\n- **Clean JSONL**: MRs never pollute the permanent issue history\n- **No accumulation**: Wisps are burned on completion, no cleanup needed\n- **Correct semantics**: Wisps are for \"operational ephemera\" - MRs fit perfectly\n- **Reduced sync churn**: Fewer JSONL updates, faster `bd sync`\n- **Cleaner queries**: `bd list` shows work items, not process artifacts\n\n## Implementation Notes\n\n### Where MRs are created\n\nCurrently MRs are created by the witness or polecat when work is ready for merge. This code needs to:\n- Set `wisp: true` on the MR issue\n- Or use a dedicated wisp creation path\n\n### Refinery changes\n\nThe refinery queries for pending MRs to process. It needs to:\n- Query wisp storage as well as (or instead of) permanent storage\n- Use `bd mol burn` or equivalent to delete processed MRs\n\n### What about cross-rig MRs?\n\nIf an MR needs to be visible outside the rig (e.g., external collaborators):\n- They would see the GitHub PR anyway\n- Or we could create a permanent \"merge completed\" notification issue\n- But this is likely unnecessary - MRs are internal coordination\n\n### Migration\n\nExisting MRs in permanent storage:\n- Can be cleaned up with `bd cleanup` or manual deletion\n- Or left to age out naturally\n- No migration of open MRs needed (they'll complete under old system\n\n## Alternatives Considered\n\n1. **Auto-cleanup of closed MRs**: Keep MRs as permanent issues but auto-delete after 24h. Simpler but still creates sync churn and temporary JSONL pollution.\n\n2. **MRs as mail only**: Polecat sends mail to refinery with merge details, no MR issue at all. Loses queryability (bd-801b [P2] [merge-request] closed - Merge: bd-bqcc\nbd-pvu0 [P2] [merge-request] closed - Merge: bd-4opy\nbd-i0rx [P2] [merge-request] closed - Merge: bd-ao0s\nbd-u0sb [P2] [merge-request] closed - Merge: bd-uqfn\nbd-8e0q [P2] [merge-request] closed - Merge: beads-ocs\nbd-hvng [P2] [merge-request] closed - Merge: bd-w193\nbd-4sfl [P2] [merge-request] closed - Merge: bd-14ie\nbd-sumr [P2] [merge-request] closed - Merge: bd-t4sb\nbd-3x9o [P2] [merge-request] closed - Merge: bd-by0d\nbd-whgv [P2] [merge-request] closed - Merge: bd-401h\nbd-f3ll [P2] [merge-request] closed - Merge: bd-ot0w\nbd-fmdy [P3] [merge-request] closed - Merge: bd-kzda).\n\n3. **Separate merge queue**: Refinery maintains internal state for pending merges, not in beads at all. Clean but requires new infrastructure.\n\nWisps are the cleanest solution - they already exist, have the right semantics, and require minimal changes.\n\n## Related\n\n- Wisp architecture: \n- Current MR creation: witness/refinery code paths\n- bd-pvu0, bd-801b: Example MRs currently in permanent storage\nEOF\n)","status":"tombstone","priority":0,"issue_type":"feature","created_at":"2025-12-23T01:39:25.4918-08:00","updated_at":"2025-12-23T01:58:23.550668-08:00","deleted_at":"2025-12-23T01:58:23.550668-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"feature"} {"id":"bd-dsdh","title":"Document sync.branch 'always dirty' working tree behavior","description":"## Context\n\nWhen sync.branch is configured, the .beads/issues.jsonl file in main's working tree is ALWAYS dirty. This is by design:\n\n1. bd sync commits to beads-sync branch (via worktree)\n2. bd sync copies JSONL to main's working tree (so CLI commands work)\n3. This copy is NOT committed to main (to reduce commit noise)\n\nContributors who watch main branch history pushed for sync.branch to avoid constant beads commit noise. But users need to understand the trade-off.\n\n## Documentation Needed\n\nUpdate README.md sync.branch section with:\n\n1. **Clear explanation** of why .beads/ is always dirty on main\n2. **\"Be Zen about it\"** - this is expected, not a bug\n3. **Workflow options:**\n - Accept dirty state, use `bd sync --merge` periodically to snapshot to main\n - Or disable sync.branch if clean working tree is more important\n4. **Shell alias tip** to hide beads from git status:\n ```bash\n alias gs='git status -- \":!.beads/\"'\n ```\n5. **When to merge**: releases, milestones, or periodic snapshots\n\n## Related\n\n- bd-7b7h: Fix that allows bd sync --merge to work with dirty .beads/\n- bd-elqd: Investigation that identified this as expected behavior","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T23:16:12.253559-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-dsp","title":"Test stdin body-file","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T17:27:32.098806-08:00","updated_at":"2025-12-17T17:28:33.832749-08:00","closed_at":"2025-12-17T17:28:33.832749-08:00"} +{"id":"bd-dsp","title":"Test stdin body-file","status":"tombstone","priority":4,"issue_type":"task","created_at":"2025-12-17T17:27:32.098806-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-dtl8","title":"Test deleteViaDaemon RPC client integration","description":"Add comprehensive tests for the deleteViaDaemon function (cmd/bd/delete.go:21) which handles client-side RPC deletion calls.\n\n## Function under test\n- deleteViaDaemon: CLI command handler that sends delete requests to daemon via RPC\n\n## Test scenarios needed\n1. Successful deletion via daemon\n2. Cascade deletion through daemon\n3. Force deletion through daemon\n4. Dry-run mode (no actual deletion)\n5. Error handling:\n - Daemon unavailable\n - Invalid issue IDs\n - Dependency conflicts\n6. JSON output validation\n7. Human-readable output formatting\n\n## Coverage target\nCurrent: 0%\nTarget: \u003e80%\n\n## Related\n- Parent epic: bd-kyll\n- Original issue: bd-7z4","status":"closed","priority":1,"issue_type":"task","assignee":"beads/nux","created_at":"2025-12-18T13:08:29.805706253-07:00","updated_at":"2025-12-23T23:50:35.615163-08:00","closed_at":"2025-12-23T23:50:35.615163-08:00","close_reason":"Added 11 integration tests for deleteViaDaemon. Coverage: 62.5% (os.Exit paths cannot be tested without subprocess handling).","dependencies":[{"issue_id":"bd-dtl8","depends_on_id":"bd-kyll","type":"parent-child","created_at":"2025-12-18T13:08:29.807984381-07:00","created_by":"mhwilkie"}]} {"id":"bd-du9h","title":"Add Validation type and validations field to Issue","description":"Add Validation struct (Validator *EntityRef, Outcome string, Timestamp time.Time, Score *float32) and Validations []Validation field to Issue. Tracks who validated/approved work completion. Core to HOP proof-of-stake concept - validators stake reputation on approvals.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-22T17:53:37.725701-08:00","updated_at":"2025-12-22T20:08:59.925028-08:00","closed_at":"2025-12-22T20:08:59.925028-08:00","close_reason":"Added Validation type with Validator, Outcome, Timestamp, Score fields. Added Validations []Validation to Issue struct. Included in content hash. Full test coverage.","dependencies":[{"issue_id":"bd-du9h","depends_on_id":"bd-7pwh","type":"parent-child","created_at":"2025-12-22T17:53:43.470984-08:00","created_by":"daemon"},{"issue_id":"bd-du9h","depends_on_id":"bd-nmch","type":"blocks","created_at":"2025-12-22T17:53:47.896552-08:00","created_by":"daemon"}]} -{"id":"bd-dwh","title":"Implement or remove ExpectExit/ExpectStdout verification fields","description":"The Verification struct in internal/types/workflow.go has ExpectExit and ExpectStdout fields that are never used by workflowVerifyCmd. Either implement the functionality or remove the dead fields.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-17T22:23:02.708627-08:00","updated_at":"2025-12-17T22:34:07.300348-08:00","closed_at":"2025-12-17T22:34:07.300348-08:00"} +{"id":"bd-dwh","title":"Implement or remove ExpectExit/ExpectStdout verification fields","description":"The Verification struct in internal/types/workflow.go has ExpectExit and ExpectStdout fields that are never used by workflowVerifyCmd. Either implement the functionality or remove the dead fields.","status":"tombstone","priority":3,"issue_type":"task","created_at":"2025-12-17T22:23:02.708627-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-dxtc","title":"Test daemon RPC delete handler","description":"Add tests for the daemon-side RPC delete handler that processes delete requests from clients.\n\n## What needs testing\n- Daemon's Delete RPC handler implementation\n- Processing delete requests from RPC clients\n- Cascade deletion at daemon level\n- Force deletion at daemon level\n- Dry-run mode validation\n- Error responses to clients\n- Dependency validation before deletion\n- Tombstone creation via daemon\n\n## Test scenarios\n1. Delete single issue via RPC\n2. Delete multiple issues via RPC\n3. Cascade deletion of dependents\n4. Force delete with orphaned dependents\n5. Dry-run returns what would be deleted without actual deletion\n6. Error: invalid issue IDs\n7. Error: insufficient permissions\n8. Error: dependency blocks deletion (without force/cascade)\n\n## Related\n- Parent epic: bd-kyll\n- Original issue: bd-7z4","status":"closed","priority":1,"issue_type":"task","assignee":"beads/furiosa","created_at":"2025-12-18T13:08:33.532111042-07:00","updated_at":"2025-12-23T23:48:47.399582-08:00","closed_at":"2025-12-23T23:48:47.399582-08:00","close_reason":"Added comprehensive tests for daemon RPC delete handler covering: dry-run mode, error handling (empty IDs, not found, templates), partial success, invalid args, reason field, and cascade/force flags","dependencies":[{"issue_id":"bd-dxtc","depends_on_id":"bd-kyll","type":"parent-child","created_at":"2025-12-18T13:08:33.534367367-07:00","created_by":"mhwilkie"}]} -{"id":"bd-dyy","title":"Review PR #513: fix hooks install docs","description":"Review and merge PR #513 from aspiers. This PR fixes incorrect docs for how to install git hooks - updates README to use bd hooks install instead of removed install.sh. Simple 1-line change. URL: https://github.com/anthropics/beads/pull/513","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:15:14.838772+11:00","updated_at":"2025-12-13T07:07:19.718544-08:00","closed_at":"2025-12-13T07:07:19.718544-08:00"} -{"id":"bd-e1085716","title":"bd validate - Comprehensive health check","description":"Run all validation checks in one command.\n\nChecks:\n- Duplicates\n- Orphaned dependencies\n- Test pollution\n- Git conflicts\n\nSupports --fix-all for auto-repair.\n\nDepends on bd-cbed9619.1, bd-0dcea000, bd-31aab707, bd-9826b69a.\n\nFiles: cmd/bd/validate.go (new)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-10-29T23:05:13.980679-07:00","updated_at":"2025-12-17T22:58:34.562008-08:00","closed_at":"2025-12-17T22:58:34.562008-08:00","close_reason":"Closed"} +{"id":"bd-dyy","title":"Review PR #513: fix hooks install docs","description":"Review and merge PR #513 from aspiers. This PR fixes incorrect docs for how to install git hooks - updates README to use bd hooks install instead of removed install.sh. Simple 1-line change. URL: https://github.com/anthropics/beads/pull/513","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-13T08:15:14.838772+11:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-e1085716","title":"bd validate - Comprehensive health check","description":"Run all validation checks in one command.\n\nChecks:\n- Duplicates\n- Orphaned dependencies\n- Test pollution\n- Git conflicts\n\nSupports --fix-all for auto-repair.\n\nDepends on bd-cbed9619.1, bd-0dcea000, bd-31aab707, bd-9826b69a.\n\nFiles: cmd/bd/validate.go (new)","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-29T23:05:13.980679-07:00","updated_at":"2025-12-25T01:21:01.952723-08:00","close_reason":"Closed","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-e7ou","title":"Fix --as flag: uses title instead of ID in mol bond","description":"In bondProtoProto, the --as flag is documented as 'Custom ID for compound proto' but the implementation uses it as the title, not the issue ID.\n\n**Current behavior (mol.go:637-638):**\n```go\nif customID != '' {\n compoundTitle = customID // Used as title, not ID\n}\n```\n\n**Options:**\n1. Change flag description to say 'Custom title' (documentation fix)\n2. Actually use it as a custom ID prefix or full ID (feature change)\n3. Add separate --title flag and make --as actually set ID\n\nRecommend option 1 for simplest fix - change 'Custom ID' to 'Custom title' in the flag description.","status":"closed","priority":3,"issue_type":"bug","created_at":"2025-12-21T10:22:59.069368-08:00","updated_at":"2025-12-21T21:18:48.514513-08:00","closed_at":"2025-12-21T21:18:48.514513-08:00","close_reason":"Fixed - renamed customID to customTitle and updated dry-run output"} {"id":"bd-eijl","title":"bd ship command for publishing capabilities","description":"Add `bd ship \u003ccapability\u003e` command that:\n\n1. Finds issue with `export:\u003ccapability\u003e` label\n2. Validates issue is closed (or --force to override)\n3. Adds `provides:\u003ccapability\u003e` label\n4. Protects `provides:*` namespace (only bd ship can add these labels)\n\nExample:\n```bash\nbd ship mol-run-assignee\n# Output: Shipped mol-run-assignee (bd-xyz)\n```\n\nPart of cross-project dependency system.\nSee: gastown/docs/cross-project-deps.md","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-21T22:37:19.123024-08:00","updated_at":"2025-12-21T23:11:47.498859-08:00","closed_at":"2025-12-21T23:11:47.498859-08:00","close_reason":"Implemented: bd ship command with export:/provides: labels, namespace protection in label add"} {"id":"bd-elqd","title":"Systematic bd sync stability investigation","description":"## Context\n\nbd sync has chronic instability issues that have persisted since inception:\n- issues.jsonl is always dirty after push\n- bd sync often creates messes requiring manual cleanup\n- Problems escalating despite accumulated bug fixes\n- Workarounds are getting increasingly draconian\n\n## Goal\n\nSystematically observe and diagnose bd sync failures rather than applying band-aid fixes.\n\n## Approach\n\n1. Start fresh session with latest binary (all fixes applied)\n2. Run bd sync and carefully observe what happens\n3. Document exact sequence of events when things go wrong\n4. File specific issues for each discrete problem identified\n5. Track the root causes, not just symptoms\n\n## Test Environment\n\n- Fresh clone or clean state\n- Latest bd binary with all bug fixes\n- Monitor both local and remote JSONL state\n- Check for timing issues, race conditions, merge conflicts\n\n## Success Criteria\n\n- Identify root causes of sync instability\n- Create actionable issues for each problem\n- Eventually achieve stable bd sync (no manual intervention needed)","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T22:57:25.35289-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} @@ -247,7 +247,7 @@ {"id":"bd-fej5","title":"bd hook: detect agent from cwd instead of defaulting to $USER","description":"**Problem:**\n`bd hook` without `--agent` defaults to `$USER` (e.g., \"stevey\") instead of detecting the agent identity from the current working directory.\n\n**Expected behavior:**\nWhen running from `/Users/stevey/gt/beads/crew/dave`, the agent should be detected as `beads/crew/dave`.\n\n**Current behavior:**\n```bash\n$ pwd\n/Users/stevey/gt/beads/crew/dave\n$ bd hook\nHook: stevey\n (empty)\n\n$ bd hook --agent beads/crew/dave\nHook: beads/crew/dave\n šŸ“Œ bd-hobo (mol) - open\n```\n\n**Fix:**\nbd hook should use the same cwd-based agent detection that other commands use (similar to how `gt mail` determines identity from cwd).","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-24T20:01:27.613892-08:00","updated_at":"2025-12-24T20:01:27.613892-08:00"} {"id":"bd-ffjt","title":"Unify template.go and mol.go under bd mol","description":"Consolidate the two DAG-template systems into one under the mol command. mol.go (on rictus branch) has the right UX (catalog/show/bond), template.go has the mechanics. Merge them, deprecate bd template commands.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T23:52:13.208972-08:00","updated_at":"2025-12-21T00:01:59.283765-08:00","closed_at":"2025-12-21T00:01:59.283765-08:00","close_reason":"Implemented mol commands with deprecation for template commands"} {"id":"bd-fgw3","title":"Update local installation","description":"Run install script or brew upgrade to get new version locally: curl -fsSL .../install.sh | bash","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:05.052016-08:00","updated_at":"2025-12-20T00:49:51.928221-08:00","closed_at":"2025-12-20T00:25:52.805029-08:00","dependencies":[{"issue_id":"bd-fgw3","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.248427-08:00","created_by":"daemon"},{"issue_id":"bd-fgw3","depends_on_id":"bd-si4g","type":"blocks","created_at":"2025-12-19T22:56:23.497325-08:00","created_by":"daemon"}]} -{"id":"bd-fi05","title":"bd sync fails with orphaned issues and duplicate ID conflict","description":"After fixing the deleted_at TEXT column scanning bug (commit 18b1eb2), bd sync still fails with two issues:\n\n1. Orphan Detection Warning: 12 orphaned child issues whose parents no longer exist (bd-cb64c226.* and bd-cbed9619.*)\n\n2. Import Failure: UNIQUE constraint failed for bd-360 - this tombstone exists in both DB and JSONL\n\nError: \"Import failed: error creating depth-0 issues: bulk insert issues: failed to insert issue bd-360: sqlite3: constraint failed: UNIQUE constraint failed: issues.id\"\n\nFix options:\n- Delete orphaned child issues with bd delete\n- Resolve bd-360 duplicate (in deletions.jsonl vs tombstone in DB)\n- Reset sync branch: git branch -f beads-sync main \u0026\u0026 git push --force-with-lease origin beads-sync","notes":"Fixed tombstone constraint violation bug. When deleting closed issues, the CHECK constraint (status = 'closed') = (closed_at IS NOT NULL) was violated because CreateTombstone didn't clear closed_at. Fix: set closed_at = NULL in tombstone creation SQL.\n\nThe sync data corruption (orphaned issues in beads-sync branch) requires manual cleanup: reset sync branch with 'git branch -f beads-sync main \u0026\u0026 git push --force-with-lease origin beads-sync'","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-13T07:14:33.831346-08:00","updated_at":"2025-12-13T10:50:48.545465-08:00","closed_at":"2025-12-13T07:30:33.843986-08:00"} +{"id":"bd-fi05","title":"bd sync fails with orphaned issues and duplicate ID conflict","description":"After fixing the deleted_at TEXT column scanning bug (commit 18b1eb2), bd sync still fails with two issues:\n\n1. Orphan Detection Warning: 12 orphaned child issues whose parents no longer exist (bd-cb64c226.* and bd-cbed9619.*)\n\n2. Import Failure: UNIQUE constraint failed for bd-360 - this tombstone exists in both DB and JSONL\n\nError: \"Import failed: error creating depth-0 issues: bulk insert issues: failed to insert issue bd-360: sqlite3: constraint failed: UNIQUE constraint failed: issues.id\"\n\nFix options:\n- Delete orphaned child issues with bd delete\n- Resolve bd-360 duplicate (in deletions.jsonl vs tombstone in DB)\n- Reset sync branch: git branch -f beads-sync main \u0026\u0026 git push --force-with-lease origin beads-sync","notes":"Fixed tombstone constraint violation bug. When deleting closed issues, the CHECK constraint (status = 'closed') = (closed_at IS NOT NULL) was violated because CreateTombstone didn't clear closed_at. Fix: set closed_at = NULL in tombstone creation SQL.\n\nThe sync data corruption (orphaned issues in beads-sync branch) requires manual cleanup: reset sync branch with 'git branch -f beads-sync main \u0026\u0026 git push --force-with-lease origin beads-sync'","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-13T07:14:33.831346-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-fmdy","title":"Merge: bd-kzda","description":"branch: polecat/toast\ntarget: main\nsource_issue: bd-kzda\nrig: beads","status":"closed","priority":3,"issue_type":"merge-request","created_at":"2025-12-23T00:27:28.952413-08:00","updated_at":"2025-12-23T01:33:25.731326-08:00","closed_at":"2025-12-23T01:33:25.731326-08:00","close_reason":"Merged to main"} {"id":"bd-fom","title":"Remove all deletions.jsonl code except migration","description":"There's deletions manifest code spread across the entire codebase that should have been removed after tombstone migration:\n\nFiles with deletions code (non-migration):\n- internal/deletions/ - entire package\n- cmd/bd/sync.go - 25+ references, auto-compact, sanitize\n- cmd/bd/delete.go - dual-writes to deletions.jsonl\n- internal/importer/importer.go - checks deletions manifest\n- internal/syncbranch/worktree.go - merges deletions.jsonl\n- cmd/bd/doctor/fix/sync.go - cleanupDeletionsManifest\n- cmd/bd/doctor/fix/deletions.go - HydrateDeletionsManifest\n- cmd/bd/integrity.go - checks deletions for data loss\n- cmd/bd/deleted.go - entire command\n- cmd/bd/compact.go - pruneDeletionsManifest\n- cmd/bd/doctor.go - checkDeletionsManifest\n- Plus many more\n\nAction: Aggressively remove all non-migration deletions code. Tombstones are the only deletion mechanism now.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T13:29:04.960863-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-fu83","title":"Fix daemon/direct mode inconsistency in relate and duplicate commands","description":"The relate.go and duplicate.go commands have inconsistent daemon/direct mode handling:\n\nWhen daemonClient is connected, they resolve IDs via RPC but then perform updates directly via store.UpdateIssue(), bypassing the daemon.\n\nAffected locations:\n- relate.go:125-139 (runRelate update)\n- relate.go:235-246 (runUnrelate update) \n- duplicate.go:120 (runDuplicate update)\n- duplicate.go:207 (runSupersede update)\n\nShould either use RPC for updates when daemon is running, or document why direct access is intentional.","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-16T20:52:54.164189-08:00","updated_at":"2025-12-21T21:47:14.10222-08:00","closed_at":"2025-12-21T21:47:14.10222-08:00","close_reason":"Already implemented in commit 3ec517cc: relate, unrelate, duplicate, supersede now use RPC Update when daemon available"} @@ -278,7 +278,7 @@ {"id":"bd-hulf","title":"Molecule execution state management","description":"Implement molecule execution state tracking.\n\n## State Location\n\n```\n.beads/molecules/\u003cmol-id\u003e.state.yaml\n```\n\n## State Schema\n\n```yaml\nid: mol-deacon-patrol\nformula: mol-deacon-patrol # Source formula\nbonded_at: ISO timestamp\nbonded_by: entity who created it\n\n# Execution state\nstatus: running | paused | completed | failed\ncurrent_step: step-id\nstarted_at: ISO timestamp\ncompleted_at: ISO timestamp (if done)\n\n# Loop tracking\nreset_count: 0\nlast_reset_at: null\n\n# Per-step state\nsteps:\n inbox-check:\n status: completed | in_progress | pending\n started_at: ...\n completed_at: ...\n spawn-work:\n status: pending\n self-inspect:\n status: pending\n\n# Variables (from formula instantiation)\nvariables:\n rig: gastown\n issue_id: gt-xxx\n```\n\n## Operations\n\n- CreateState(molID, formula, variables) - Initialize state\n- LoadState(molID) - Read current state \n- SaveState(molID, state) - Write state\n- AdvanceStep(molID) - Mark current complete, find next\n- ResetState(molID) - Reset all steps to pending\n\n## Files\n\n- internal/mol/state.go\n- internal/mol/types.go","status":"closed","priority":0,"issue_type":"task","created_at":"2025-12-24T15:53:43.381634-08:00","updated_at":"2025-12-24T16:53:11.807645-08:00","closed_at":"2025-12-24T16:53:11.807645-08:00","close_reason":"REJECTED: Violates core architecture. Molecule execution state MUST be derived from which child beads are closed vs open - beads IS the ledger. No separate state.yaml files. See HOP CONTEXT.md: 'Git as blockchain' principle."} {"id":"bd-hvng","title":"Merge: bd-w193","description":"branch: polecat/nux\ntarget: main\nsource_issue: bd-w193\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:23:47.496139-08:00","updated_at":"2025-12-20T23:17:26.996479-08:00","closed_at":"2025-12-20T23:17:26.996479-08:00","close_reason":"Branches nuked, MRs obsolete"} {"id":"bd-hw3w","title":"Update info.go versionChanges","description":"Add entry to versionChanges in cmd/bd/info.go with agent-actionable changes for {{version}}","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:01.016558-08:00","updated_at":"2025-12-20T17:59:26.262511-08:00","closed_at":"2025-12-20T01:23:50.3879-08:00","dependencies":[{"issue_id":"bd-hw3w","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:14.941855-08:00","created_by":"daemon"},{"issue_id":"bd-hw3w","depends_on_id":"bd-czss","type":"blocks","created_at":"2025-12-19T22:56:23.219257-08:00","created_by":"daemon"}]} -{"id":"bd-hy9p","title":"Add --body-file flag to bd create for reading descriptions from files","description":"## Problem\n\nCreating issues with long/complex descriptions via CLI requires shell escaping gymnastics:\n\n```bash\n# Current workaround - awkward heredoc quoting\nbd create --title=\"...\" --description=\"$(cat \u003c\u003c'EOF'\n...markdown...\nEOF\n)\"\n\n# Often fails with quote escaping errors in eval context\n# Agents resort to writing temp files then reading them\n```\n\n## Proposed Solution\n\nAdd `--body-file` and `--description-file` flags to read description from a file, matching `gh` CLI pattern.\n\n```bash\n# Natural pattern that aligns with training data\ncat \u003e /tmp/desc.md \u003c\u003c 'EOF'\n...markdown content...\nEOF\n\nbd create --title=\"...\" --body-file=/tmp/desc.md\n```\n\n## Implementation\n\n### 1. Add new flags to `bd create`\n\n```go\ncreateCmd.Flags().String(\"body-file\", \"\", \"Read description from file (use - for stdin)\")\ncreateCmd.Flags().String(\"description-file\", \"\", \"Alias for --body-file\")\n```\n\n### 2. Flag precedence\n\n- If `--body-file` or `--description-file` is provided, read from file\n- If value is `-`, read from stdin\n- Otherwise fall back to `--body` or `--description` flag\n- If neither provided, description is empty (current behavior)\n\n### 3. Error handling\n\n- File doesn't exist ā†’ clear error message\n- File not readable ā†’ clear error message\n- stdin specified but not available ā†’ clear error message\n\n## Benefits\n\nāœ… **Matches training data**: `gh issue create --body-file file.txt` is a common pattern\nāœ… **No shell escaping issues**: File content is read directly\nāœ… **Works with any content**: Markdown, special characters, quotes, etc.\nāœ… **Agent-friendly**: Agents already write complex content to temp files\nāœ… **User-friendly**: Easier for humans too when pasting long descriptions\n\n## Related Commands\n\nConsider adding similar support to:\n- `bd update --body-file` (for updating descriptions)\n- `bd comment --body-file` (if/when we add comments)\n\n## Examples\n\n```bash\n# From file\nbd create --title=\"Add new feature\" --body-file=feature.md\n\n# From stdin\necho \"Quick description\" | bd create --title=\"Bug fix\" --body-file=-\n\n# With other flags\nbd create \\\n --title=\"Security issue\" \\\n --type=bug \\\n --priority=0 \\\n --body-file=security-report.md \\\n --label=security\n```\n\n## Testing\n\n- Test with normal files\n- Test with stdin (`-`)\n- Test with non-existent files (error handling)\n- Test with binary files (should handle gracefully)\n- Test with empty files (valid - empty description)\n- Test that `--description-file` and `--body-file` are equivalent aliases","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-11-22T00:02:08.762684-08:00","updated_at":"2025-12-17T23:13:40.536024-08:00","closed_at":"2025-12-17T17:28:52.505239-08:00"} +{"id":"bd-hy9p","title":"Add --body-file flag to bd create for reading descriptions from files","description":"## Problem\n\nCreating issues with long/complex descriptions via CLI requires shell escaping gymnastics:\n\n```bash\n# Current workaround - awkward heredoc quoting\nbd create --title=\"...\" --description=\"$(cat \u003c\u003c'EOF'\n...markdown...\nEOF\n)\"\n\n# Often fails with quote escaping errors in eval context\n# Agents resort to writing temp files then reading them\n```\n\n## Proposed Solution\n\nAdd `--body-file` and `--description-file` flags to read description from a file, matching `gh` CLI pattern.\n\n```bash\n# Natural pattern that aligns with training data\ncat \u003e /tmp/desc.md \u003c\u003c 'EOF'\n...markdown content...\nEOF\n\nbd create --title=\"...\" --body-file=/tmp/desc.md\n```\n\n## Implementation\n\n### 1. Add new flags to `bd create`\n\n```go\ncreateCmd.Flags().String(\"body-file\", \"\", \"Read description from file (use - for stdin)\")\ncreateCmd.Flags().String(\"description-file\", \"\", \"Alias for --body-file\")\n```\n\n### 2. Flag precedence\n\n- If `--body-file` or `--description-file` is provided, read from file\n- If value is `-`, read from stdin\n- Otherwise fall back to `--body` or `--description` flag\n- If neither provided, description is empty (current behavior)\n\n### 3. Error handling\n\n- File doesn't exist ā†’ clear error message\n- File not readable ā†’ clear error message\n- stdin specified but not available ā†’ clear error message\n\n## Benefits\n\nāœ… **Matches training data**: `gh issue create --body-file file.txt` is a common pattern\nāœ… **No shell escaping issues**: File content is read directly\nāœ… **Works with any content**: Markdown, special characters, quotes, etc.\nāœ… **Agent-friendly**: Agents already write complex content to temp files\nāœ… **User-friendly**: Easier for humans too when pasting long descriptions\n\n## Related Commands\n\nConsider adding similar support to:\n- `bd update --body-file` (for updating descriptions)\n- `bd comment --body-file` (if/when we add comments)\n\n## Examples\n\n```bash\n# From file\nbd create --title=\"Add new feature\" --body-file=feature.md\n\n# From stdin\necho \"Quick description\" | bd create --title=\"Bug fix\" --body-file=-\n\n# With other flags\nbd create \\\n --title=\"Security issue\" \\\n --type=bug \\\n --priority=0 \\\n --body-file=security-report.md \\\n --label=security\n```\n\n## Testing\n\n- Test with normal files\n- Test with stdin (`-`)\n- Test with non-existent files (error handling)\n- Test with binary files (should handle gracefully)\n- Test with empty files (valid - empty description)\n- Test that `--description-file` and `--body-file` are equivalent aliases","status":"tombstone","priority":1,"issue_type":"feature","created_at":"2025-11-22T00:02:08.762684-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} {"id":"bd-hzvz","title":"Update info.go versionChanges","description":"Add entry to versionChanges in cmd/bd/info.go with agent-actionable changes for 0.30.7","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649359-08:00","updated_at":"2025-12-19T22:57:31.604229-08:00","closed_at":"2025-12-19T22:57:31.604229-08:00","dependencies":[{"issue_id":"bd-hzvz","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.652068-08:00","created_by":"stevey"},{"issue_id":"bd-hzvz","depends_on_id":"bd-2ep8","type":"blocks","created_at":"2025-12-19T22:56:48.652376-08:00","created_by":"stevey"}]} {"id":"bd-i0rx","title":"Merge: bd-ao0s","description":"branch: polecat/rictus\ntarget: main\nsource_issue: bd-ao0s\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-20T01:13:42.716658-08:00","updated_at":"2025-12-20T23:17:26.993744-08:00","closed_at":"2025-12-20T23:17:26.993744-08:00","close_reason":"Branches nuked, MRs obsolete"} {"id":"bd-ia3g","title":"BondRef.ProtoID field name is misleading for mol+mol bonds","description":"In bondMolMol, the BondRef.ProtoID field is used to store molecule IDs:\n\n```go\nBondedFrom: append(molA.BondedFrom, types.BondRef{\n ProtoID: molB.ID, // This is a molecule, not a proto\n ...\n})\n```\n\nThis is semantically confusing since ProtoID suggests it should only hold proto references.\n\n**Options:**\n1. Rename ProtoID to SourceID (breaking change, needs migration)\n2. Add documentation clarifying ProtoID can hold molecule IDs in bond context\n3. Leave as-is, accept the naming is imprecise\n\nLow priority since it's just naming, not functionality.","status":"open","priority":4,"issue_type":"task","created_at":"2025-12-21T10:23:00.755067-08:00","updated_at":"2025-12-21T10:23:00.755067-08:00"} @@ -288,23 +288,23 @@ {"id":"bd-ieyy","title":"bd close --continue: auto-advance to next molecule step","description":"Add --continue flag to bd close for seamless molecule step transitions.\n\n## Usage\n\nbd close \u003cstep-id\u003e --continue [--no-auto]\n\n## Behavior\n\n1. Closes the specified step\n2. Finds next ready step in same molecule (sibling/child)\n3. By default, marks it in_progress (--no-auto to skip)\n4. Outputs the transition\n\n## Output\n\n[done] Closed gt-abc.3: Implement feature\n\nNext ready in molecule:\n gt-abc.4: Write tests\n\n[arrow] Marked in_progress (use --no-auto to skip)\n\n## If no next step\n\n[done] Closed gt-abc.6: Exit decision\n\nMolecule gt-abc complete! All steps closed.\nConsider: bd mol squash gt-abc --summary '...'\n\n## Key behaviors\n- Detects parent molecule from closed step\n- Finds next unblocked sibling\n- Auto-claims by default (propulsion principle)\n- Graceful handling when molecule is complete\n\n## Gas Town integration\n- gt-lz13: Update templates with nav workflow\n- gt-um6q: Update docs with nav workflow","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-12-22T17:03:44.238243-08:00","updated_at":"2025-12-22T17:36:31.937727-08:00","closed_at":"2025-12-22T17:36:31.937727-08:00","close_reason":"Implemented mol current and close --continue"} {"id":"bd-ifuw","title":"test hook pin fix","status":"tombstone","priority":2,"issue_type":"task","assignee":"dave","created_at":"2025-12-23T04:43:15.598698-08:00","updated_at":"2025-12-23T04:51:29.438139-08:00","deleted_at":"2025-12-23T04:51:29.438139-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} {"id":"bd-iic1","title":"Phase 2.2: Switch bdt storage to TOON format","description":"Currently bdt stores issues in JSONL format in issues.toon file. Phase 2.2 must implement actual TOON format storage - this is the fundamental goal of the bdtoon project.\n\n## Current State (Phase 2.1)\n- issues.toon stores JSONL (intermediate format)\n- --toon flag allows output in TOON format for LLM consumption\n- Problem: We're not actually using TOON as the fundamental storage format\n\n## Required Work (Phase 2.2)\n1. Switch issue file I/O to write TOON format instead of JSONL\n - Update cmd/bdt/storage.go to use EncodeTOON for writing\n - Update cmd/bdt/storage.go to decode TOON (currently decodes JSON)\n - Ensure round-trip: write TOON ā†’ read TOON ā†’ write TOON is byte-identical\n\n2. Update command implementations\n - cmd/bdt/create.go: Write newly created issues to TOON format\n - cmd/bdt/list.go: Read issues from TOON format\n - cmd/bdt/show.go: Read from TOON format\n - cmd/bdt/import.go: Convert imported JSONL to TOON\n - cmd/bdt/export.go: Export TOON to JSONL (for bd compatibility)\n\n3. Implement TOON parser that handles gotoon's encoder-only limitation\n - Since gotoon doesn't decode TOON, need custom TOONā†’JSON decoder\n - OR continue storing TOON but decoding via intermediate JSON conversion\n\n4. Git merge driver optimization\n - TOON is line-oriented, better for 3-way merges than binary formats\n - Configure git merge driver for .toon files\n\n5. Comprehensive testing\n - Round-trip tests: Issue ā†’ TOON ā†’ storage ā†’ read ā†’ Issue\n - Merge conflict resolution tests with TOON format\n - Large issue set performance tests\n\n## Success Criteria\n- issues.toon stores actual TOON format (not JSONL)\n- bdt list reads from TOON file\n- bdt create writes to TOON file\n- Round-trip: create issue ā†’ list ā†’ show returns identical data\n- All 65+ tests still passing\n- Performance comparable to JSONL storage","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T14:05:41.394964404-07:00","updated_at":"2025-12-19T14:37:17.879612634-07:00","closed_at":"2025-12-19T14:37:17.879612634-07:00"} -{"id":"bd-in7","title":"Test message","description":"Hello world","status":"closed","priority":2,"issue_type":"message","created_at":"2025-12-17T23:16:13.184946-08:00","updated_at":"2025-12-18T17:42:26.000073-08:00","closed_at":"2025-12-17T23:37:38.563369-08:00"} +{"id":"bd-in7","title":"Test message","description":"Hello world","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-17T23:16:13.184946-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} {"id":"bd-indn","title":"bd template commands fail with daemon mode","description":"The `bd template show` and `bd template instantiate` commands fail with 'Error loading template: no database connection' when daemon is running.\n\n**Reproduction:**\n```bash\nbd daemon --start\nbd template show bd-qqc # Error: no database connection\nbd template show bd-qqc --no-daemon # Works\n```\n\n**Expected:** Template commands should work with daemon like other commands.\n\n**Workaround:** Use `--no-daemon` flag.\n\n**Location:** Likely in cmd/bd/template.go - daemon RPC path not implemented for template operations.","status":"closed","priority":2,"issue_type":"bug","assignee":"beads/india","created_at":"2025-12-18T22:57:35.16596-08:00","updated_at":"2025-12-23T22:40:32.763595-08:00","closed_at":"2025-12-23T22:40:32.763595-08:00","close_reason":"Fixed: Added daemon-compatible functions for template operations (loadTemplateSubgraphViaDaemon, cloneSubgraphViaDaemon)"} {"id":"bd-io8c","title":"Improve test coverage for internal/syncbranch (33.0% ā†’ 70%)","description":"Improve test coverage for internal/syncbranch package from 27% to 70%.\n\n## Current State\n- Coverage: 27.0%\n- Files: syncbranch.go, worktree.go\n- Tests: syncbranch_test.go (basic tests exist)\n\n## Functions Needing Tests\n\n### syncbranch.go (config management)\n- [x] ValidateBranchName - has tests\n- [ ] Get - needs store mock tests\n- [ ] GetFromYAML - needs YAML parsing tests\n- [ ] IsConfigured - needs file system tests\n- [ ] IsConfiguredWithDB - needs DB path tests\n- [ ] Set - needs store mock tests\n- [ ] Unset - needs store mock tests\n\n### worktree.go (git operations) - PRIORITY\n- [ ] CommitToSyncBranch - needs git repo fixture tests\n- [ ] PullFromSyncBranch - needs merge scenario tests\n- [ ] CheckDivergence - needs ahead/behind tests\n- [ ] ResetToRemote - needs reset scenario tests\n- [ ] performContentMerge - needs 3-way merge tests\n- [ ] extractJSONLFromCommit - needs git show tests\n- [ ] hasChangesInWorktree - needs dirty state tests\n- [ ] commitInWorktree - needs commit scenario tests\n\n## Implementation Guide\n\n1. **Use testutil fixtures:**\n ```go\n import \"github.com/steveyegge/beads/internal/testutil/fixtures\"\n \n func TestCommitToSyncBranch(t *testing.T) {\n repo := fixtures.NewGitRepo(t)\n defer repo.Cleanup()\n // ... test scenarios\n }\n ```\n\n2. **Test scenarios for worktree.go:**\n - Clean commit (no conflicts)\n - Non-fast-forward push (diverged)\n - Merge conflict resolution\n - Empty changes (nothing to commit)\n\n3. **Mock storage for syncbranch.go:**\n ```go\n store := memory.New()\n // Set up test config\n syncbranch.Set(ctx, store, \"beads-sync\")\n ```\n\n## Success Criteria\n- Coverage ā‰„ 70%\n- All public functions have at least one test\n- Edge cases covered for git operations\n- Tests pass with `go test -race ./internal/syncbranch`\n\n## Run Tests\n```bash\ngo test -v -cover ./internal/syncbranch\ngo test -race ./internal/syncbranch\n```","status":"closed","priority":1,"issue_type":"task","assignee":"beads/Syncer","created_at":"2025-12-13T20:43:02.079145-08:00","updated_at":"2025-12-23T13:46:10.191435-08:00","closed_at":"2025-12-23T13:46:10.191435-08:00","close_reason":"Improved coverage from 27% to 67% (close to 70% target)","dependencies":[{"issue_id":"bd-io8c","depends_on_id":"bd-iz5t","type":"parent-child","created_at":"2025-12-23T12:44:07.213092-08:00","created_by":"daemon"}]} {"id":"bd-ipj7","title":"enhance 'bd status' to show recent activity","description":"It would be nice to be able to quickly view the last N changes in the database, to see wha's recently been worked on. I'm imagining something like 'bd status activity'.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-21T11:08:50.996541974-07:00","updated_at":"2025-12-21T17:54:00.279039-08:00","closed_at":"2025-12-21T17:54:00.279039-08:00","close_reason":"Already implemented - bd status includes Recent Activity section"} {"id":"bd-iq19","title":"Distill: promote ad-hoc epic to proto","description":"Extract a reusable proto from an existing ad-hoc epic.\n\nCOMMAND: bd mol distill \u003cepic-id\u003e [--as \u003cproto-name\u003e]\n\nBEHAVIOR:\n- Clone the epic and all children as a new proto\n- Set is_template=true on all cloned issues\n- Replace concrete values with {{variable}} placeholders (interactive or --var flags)\n- Add to proto catalog\n\nFLAGS:\n- --as NAME: Custom proto ID (default: proto-\u003cepic-id\u003e)\n- --var field=placeholder: Replace value with variable placeholder\n- --interactive: Prompt for each field that looks parameterizable\n- --dry-run: Preview the proto structure\n\nEXAMPLE:\n bd mol distill bd-o5xe --as proto-feature-workflow \\\n --var title=feature_name \\\n --var assignee=worker\n\nUSE CASES:\n- Team develops good workflow organically, wants to reuse it\n- Capture tribal knowledge as executable templates\n- Create starting point for similar future work\n\nThe reverse of spawn: instead of proto ā†’ molecule, it's molecule ā†’ proto.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-21T01:05:07.953538-08:00","updated_at":"2025-12-21T10:31:56.814246-08:00","closed_at":"2025-12-21T10:31:56.814246-08:00","close_reason":"Implemented distill command in mol.go","dependencies":[{"issue_id":"bd-iq19","depends_on_id":"bd-o5xe","type":"parent-child","created_at":"2025-12-21T01:05:16.495774-08:00","created_by":"daemon"},{"issue_id":"bd-iq19","depends_on_id":"bd-rnnr","type":"blocks","created_at":"2025-12-21T01:05:16.560404-08:00","created_by":"daemon"}]} -{"id":"bd-iq7n","title":"Audit and fix JSONL filename mismatches across all repo clones","description":"## Problem\n\nMultiple clones of repos are configured with different JSONL filenames (issues.jsonl vs beads.jsonl), causing:\n1. JSONL files to be resurrected after deletion (one clone pushes issues.jsonl, another pushes beads.jsonl)\n2. Agents unable to see issues filed by other agents after sync\n3. Merge conflicts and data inconsistencies\n\n## Root Cause\n\nWhen repos were \"bd doctored\" or initialized at different times, some got issues.jsonl (old default) and others got beads.jsonl (Beads repo specific). These clones push their respective files, creating duplicates.\n\n## Task\n\nScan all repo clones under ~/src/ (1-2 levels deep) and standardize their JSONL configuration.\n\n### Step 1: Find all beads-enabled repos\n\n```bash\n# Find all directories named 'beads' at levels 1-2 under ~/src/\nfind ~/src -maxdepth 2 -type d -name beads\n```\n\n### Step 2: For each repo found, check configuration\n\nFor each directory from Step 1, check:\n- Does `.beads/metadata.json` exist?\n- What is the `jsonl_export` value?\n- What JSONL files actually exist in `.beads/`?\n- Are there multiple JSONL files (problem!)?\n\n### Step 3: Create audit report\n\nGenerate a report showing:\n```\nRepo Path | Config | Actual Files | Status\n----------------------------------- | ------------- | ---------------------- | --------\n~/src/beads | beads.jsonl | beads.jsonl | OK\n~/src/dave/beads | issues.jsonl | issues.jsonl | MISMATCH\n~/src/emma/beads | issues.jsonl | issues.jsonl, beads.jsonl | DUPLICATE!\n```\n\n### Step 4: Determine canonical name for each repo\n\nFor repos that are the SAME git repository (check `git remote -v`):\n- Group them together\n- Determine which JSONL filename should be canonical (majority wins, or beads.jsonl for the beads repo itself)\n- List which clones need to be updated\n\n### Step 5: Generate fix script\n\nCreate a script that for each mismatched clone:\n1. Updates `.beads/metadata.json` to use the canonical name\n2. If JSONL file needs renaming: `git mv .beads/old.jsonl .beads/new.jsonl`\n3. Removes any duplicate JSONL files: `git rm .beads/duplicate.jsonl`\n4. Commits the change\n5. Syncs: `bd sync`\n\n### Expected Output\n\n1. Audit report showing all repos and their config status\n2. List of repos grouped by git remote (same repository)\n3. Fix script or manual instructions for standardizing each repo\n4. Verification that after fixes, all clones of the same repo use the same JSONL filename\n\n### Edge Cases\n\n- Handle repos without metadata.json (use default discovery)\n- Handle repos with no git remote (standalone/local)\n- Handle repos that are not git repositories\n- Don't modify repos with uncommitted changes (warn instead)\n\n### Success Criteria\n\n- All clones of the same git repository use the same JSONL filename\n- No duplicate JSONL files in any repo\n- All configurations documented in metadata.json\n- bd doctor passes on all repos","status":"closed","priority":0,"issue_type":"task","created_at":"2025-11-21T23:58:35.044762-08:00","updated_at":"2025-12-17T23:13:40.531403-08:00","closed_at":"2025-12-17T16:50:59.510972-08:00"} +{"id":"bd-iq7n","title":"Audit and fix JSONL filename mismatches across all repo clones","description":"## Problem\n\nMultiple clones of repos are configured with different JSONL filenames (issues.jsonl vs beads.jsonl), causing:\n1. JSONL files to be resurrected after deletion (one clone pushes issues.jsonl, another pushes beads.jsonl)\n2. Agents unable to see issues filed by other agents after sync\n3. Merge conflicts and data inconsistencies\n\n## Root Cause\n\nWhen repos were \"bd doctored\" or initialized at different times, some got issues.jsonl (old default) and others got beads.jsonl (Beads repo specific). These clones push their respective files, creating duplicates.\n\n## Task\n\nScan all repo clones under ~/src/ (1-2 levels deep) and standardize their JSONL configuration.\n\n### Step 1: Find all beads-enabled repos\n\n```bash\n# Find all directories named 'beads' at levels 1-2 under ~/src/\nfind ~/src -maxdepth 2 -type d -name beads\n```\n\n### Step 2: For each repo found, check configuration\n\nFor each directory from Step 1, check:\n- Does `.beads/metadata.json` exist?\n- What is the `jsonl_export` value?\n- What JSONL files actually exist in `.beads/`?\n- Are there multiple JSONL files (problem!)?\n\n### Step 3: Create audit report\n\nGenerate a report showing:\n```\nRepo Path | Config | Actual Files | Status\n----------------------------------- | ------------- | ---------------------- | --------\n~/src/beads | beads.jsonl | beads.jsonl | OK\n~/src/dave/beads | issues.jsonl | issues.jsonl | MISMATCH\n~/src/emma/beads | issues.jsonl | issues.jsonl, beads.jsonl | DUPLICATE!\n```\n\n### Step 4: Determine canonical name for each repo\n\nFor repos that are the SAME git repository (check `git remote -v`):\n- Group them together\n- Determine which JSONL filename should be canonical (majority wins, or beads.jsonl for the beads repo itself)\n- List which clones need to be updated\n\n### Step 5: Generate fix script\n\nCreate a script that for each mismatched clone:\n1. Updates `.beads/metadata.json` to use the canonical name\n2. If JSONL file needs renaming: `git mv .beads/old.jsonl .beads/new.jsonl`\n3. Removes any duplicate JSONL files: `git rm .beads/duplicate.jsonl`\n4. Commits the change\n5. Syncs: `bd sync`\n\n### Expected Output\n\n1. Audit report showing all repos and their config status\n2. List of repos grouped by git remote (same repository)\n3. Fix script or manual instructions for standardizing each repo\n4. Verification that after fixes, all clones of the same repo use the same JSONL filename\n\n### Edge Cases\n\n- Handle repos without metadata.json (use default discovery)\n- Handle repos with no git remote (standalone/local)\n- Handle repos that are not git repositories\n- Don't modify repos with uncommitted changes (warn instead)\n\n### Success Criteria\n\n- All clones of the same git repository use the same JSONL filename\n- No duplicate JSONL files in any repo\n- All configurations documented in metadata.json\n- bd doctor passes on all repos","status":"tombstone","priority":0,"issue_type":"task","created_at":"2025-11-21T23:58:35.044762-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-is6m","title":"Add gate checking to Deacon patrol loop","description":"Integrate gate checking into Deacon's patrol cycle.\n\n## Patrol Integration\n```go\nfunc (d *Deacon) checkGates(ctx context.Context) {\n gates, _ := d.store.ListOpenGates(ctx)\n \n for _, gate := range gates {\n // Check timeout\n if time.Since(gate.CreatedAt) \u003e gate.Timeout {\n d.notifyWaiters(gate, \"timeout\")\n d.closeGate(gate, \"timed out\")\n continue\n }\n \n // Check condition\n if d.checkCondition(gate.AwaitType, gate.AwaitID) {\n d.notifyWaiters(gate, \"cleared\")\n d.closeGate(gate, \"condition met\")\n }\n }\n}\n```\n\n## Note\nThis task is in Gas Town (gt), not beads. May need to be moved there.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T11:44:36.839709-08:00","updated_at":"2025-12-23T12:19:44.204647-08:00","closed_at":"2025-12-23T12:19:44.204647-08:00","close_reason":"Moved to gastown: gt-dh65","dependencies":[{"issue_id":"bd-is6m","depends_on_id":"bd-udsi","type":"parent-child","created_at":"2025-12-23T11:44:52.909253-08:00","created_by":"daemon"},{"issue_id":"bd-is6m","depends_on_id":"bd-u66e","type":"blocks","created_at":"2025-12-23T11:44:56.428084-08:00","created_by":"daemon"}]} {"id":"bd-iw4z","title":"Compound visualization in bd mol show","description":"Enhance bd mol show to display compound structure.\n\nENHANCEMENTS:\n- Show constituent protos and how they're bonded\n- Display bond type (sequential/parallel) between components\n- Indicate attachment points\n- Show combined variable requirements across all protos\n\nEXAMPLE OUTPUT:\n\n Compound: proto-feature-with-tests\n Bonded from:\n ā””ā”€ proto-feature (root)\n ā””ā”€ proto-testing (sequential, after completion)\n \n Variables: {{name}}, {{version}}, {{test_suite}}\n \n Structure:\n proto-feature-with-tests\n ā”œā”€ Design feature {{name}}\n ā”œā”€ Implement core\n ā”œā”€ Write unit tests ā† from proto-testing\n ā””ā”€ Run test suite {{test_suite}} ā† from proto-testing","status":"deferred","priority":2,"issue_type":"task","created_at":"2025-12-21T00:59:26.71318-08:00","updated_at":"2025-12-21T11:12:44.012871-08:00","dependencies":[{"issue_id":"bd-iw4z","depends_on_id":"bd-o5xe","type":"parent-child","created_at":"2025-12-21T00:59:51.500865-08:00","created_by":"daemon"},{"issue_id":"bd-iw4z","depends_on_id":"bd-rnnr","type":"blocks","created_at":"2025-12-21T00:59:51.891643-08:00","created_by":"daemon"}]} {"id":"bd-iz5t","title":"Swarm: 13 beads backlog issues for polecat execution","description":"## Swarm Overview\n\n13 issues prepared for parallel polecat execution. All issues have been enhanced with concrete implementation guidance, file lists, and success criteria.\n\n## Issue List\n\n### Bug (1) - HIGH PRIORITY\n| ID | Priority | Title |\n|----|----------|-------|\n| bd-phtv | P1 | Pinned field overwritten by subsequent commands |\n\n### Test Coverage (3)\n| ID | Package | Target |\n|----|---------|--------|\n| bd-io8c | internal/syncbranch | 27% ā†’ 70% |\n| bd-thgk | internal/compact | 17% ā†’ 70% |\n| bd-tvu3 | internal/beads | 48% ā†’ 70% |\n\n### Code Quality (3)\n| ID | Task |\n|----|------|\n| bd-qioh | FatalError pattern standardization |\n| bd-rgyd | Split queries.go (1704 lines ā†’ 5 files) |\n| bd-u2sc.3 | Split cmd/bd files (sync/init/show/compact) |\n\n### Features (4)\n| ID | Task |\n|----|------|\n| bd-au0.5 | Search date/priority filters |\n| bd-ykd9 | Doctor --fix auto-repair |\n| bd-g4b4 | Close hooks system |\n| bd-likt | Gate daemon RPC |\n\n### Polish (2)\n| ID | Task |\n|----|------|\n| bd-4qfb | Doctor output formatting |\n| bd-u2sc.4 | slog structured logging |\n\n## Issue Details\n\nAll issues have been enhanced with:\n- Concrete file lists to modify\n- Code snippets and patterns\n- Success criteria\n- Test commands\n\nRun `bd show \u003cid\u003e` for full details on any issue.\n\n## Execution Notes\n\n- All issues are independent (no blockers between them)\n- bd-phtv (P1 bug) should get priority - affects bd pin functionality\n- Test coverage tasks are straightforward but time-consuming\n- File split tasks (bd-rgyd, bd-u2sc.3) are mechanical but important\n\n## Completed During Prep\n\n- bd-ucgz (P2 bug) - Fixed inline: external deps orphan check (commit f2db0a1d)\n- Moved 5 gastown issues out of beads backlog (gt-dh65, gt-ng6g, gt-fqcz, gt-gswn, gt-rw2z)\n- Deferred 4 premature/post-1.0 issues\n- Closed bd-udsi epic (core implementation complete)","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-23T12:43:58.427835-08:00","updated_at":"2025-12-23T20:26:50.629471-08:00","closed_at":"2025-12-23T20:26:50.629471-08:00","close_reason":"All 13 swarm issues completed by polecats"} {"id":"bd-j0tr","title":"Phase 1.3: Basic TOON read/write operations","description":"Add basic TOON read/write operations to bdt executable. Implement create, list, and show commands that use the internal/toon package for encoding/decoding to TOON format.\n\n## Subtasks\n1. Implement bdt create command - Create issues and serialize to TOON format\n2. Implement bdt list command - Read issues.toon and display all issues\n3. Implement bdt show command - Display single issue by ID\n4. Add file I/O operations for issues.toon\n5. Integrate internal/toon package (EncodeTOON, DecodeJSON)\n6. Write tests for create, list, show operations\n\n## Files to Create/Modify\n- cmd/bdt/create.go - Create command\n- cmd/bdt/list.go - List command \n- cmd/bdt/show.go - Show command\n- cmd/bdt/storage.go - File I/O helper\n\n## Success Criteria\n- bdt create \"Issue title\" creates and saves to issues.toon\n- bdt list displays all issues in human-readable format\n- bdt list --json shows JSON output\n- bdt show \u003cid\u003e displays single issue\n- Issues round-trip correctly: create ā†’ list ā†’ show\n- All tests passing with \u003e80% coverage","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T12:59:54.270296918-07:00","updated_at":"2025-12-19T13:09:00.196045685-07:00","closed_at":"2025-12-19T13:09:00.196045685-07:00"} -{"id":"bd-j3il","title":"Add bd reset command for clean slate restart","description":"Implement a command to reset beads to a clean starting state.\n\n**Context:** GitHub issue #479 - users sometimes get beads into an invalid state after updates, and there's no clean way to start fresh. The git backup/restore mechanism that protects against accidental deletion also makes it hard to intentionally reset.\n\n**Current workaround** (from maphew):\n```bash\nbd daemons killall\ngit rm .beads/*.jsonl\ngit commit -m 'remove old issues'\nrm .beads/*\nbd init\nbd onboard\n```\n\n**Desired:** A proper `bd reset` command that handles this cleanly and safely.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-13T08:41:34.956552+11:00","updated_at":"2025-12-13T08:43:49.970591+11:00","closed_at":"2025-12-13T08:43:49.970591+11:00"} +{"id":"bd-j3il","title":"Add bd reset command for clean slate restart","description":"Implement a command to reset beads to a clean starting state.\n\n**Context:** GitHub issue #479 - users sometimes get beads into an invalid state after updates, and there's no clean way to start fresh. The git backup/restore mechanism that protects against accidental deletion also makes it hard to intentionally reset.\n\n**Current workaround** (from maphew):\n```bash\nbd daemons killall\ngit rm .beads/*.jsonl\ngit commit -m 'remove old issues'\nrm .beads/*\nbd init\nbd onboard\n```\n\n**Desired:** A proper `bd reset` command that handles this cleanly and safely.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-13T08:41:34.956552+11:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} {"id":"bd-j4cr","title":"bd cook: waits_for field not preserved in cooked protos","description":"The `waits_for` field in formula steps is not preserved in the cooked proto.\n\n## Formula\n\n```yaml\n- id: aggregate\n title: Aggregate arm results\n needs: [survey-workers]\n waits_for: all-children\n description: |\n This is a **fanout gate**...\n```\n\n## Expected\n\nThe cooked proto step should have metadata indicating it's a gate:\n- Label: `gate:all-children` or\n- Field in issue metadata indicating wait behavior\n\n## Actual\n\nThe `waits_for` field is silently ignored. Only the description mentions 'fanout gate'.\n\n## Impact\n\nThe execution engine cannot determine which steps are gates that need to wait\nfor dynamically-bonded children. This breaks the Christmas Ornament pattern\nwhere aggregate steps must wait for all polecat-arm wisps to complete.\n\n## Related\n\nbd-hr39: needs field not converted to step dependencies","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-24T13:51:10.494565-08:00","updated_at":"2025-12-24T13:59:09.932552-08:00","closed_at":"2025-12-24T13:59:09.932552-08:00","close_reason":"Fixed in this session"} {"id":"bd-j6lr","title":"GH#402: Add --parent flag documentation to bd onboard","description":"bd onboard output is missing --parent flag for epic subtasks. Agents guess wrong syntax (--deps parent:). See GitHub issue #402.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:56.594829-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-jgxi","title":"Auto-migrate database on CLI version bump","description":"When CLI is upgraded (e.g., 0.24.0 ā†’ 0.24.1), database version becomes stale. Add auto-migration in PersistentPreRun or daemon startup. Check dbVersion != CLIVersion and run bd migrate automatically. Fixes recurring UX issue where bd doctor shows version mismatch after every CLI upgrade.","status":"closed","priority":0,"issue_type":"feature","created_at":"2025-11-21T23:16:09.004619-08:00","updated_at":"2025-12-17T23:13:40.535453-08:00","closed_at":"2025-12-17T17:15:43.605762-08:00","dependencies":[{"issue_id":"bd-jgxi","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:09.005513-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-jgxi","title":"Auto-migrate database on CLI version bump","description":"When CLI is upgraded (e.g., 0.24.0 ā†’ 0.24.1), database version becomes stale. Add auto-migration in PersistentPreRun or daemon startup. Check dbVersion != CLIVersion and run bd migrate automatically. Fixes recurring UX issue where bd doctor shows version mismatch after every CLI upgrade.","status":"tombstone","priority":0,"issue_type":"feature","created_at":"2025-11-21T23:16:09.004619-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","dependencies":[{"issue_id":"bd-jgxi","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:09.005513-08:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} {"id":"bd-jke6","title":"Add covering index (label, issue_id) for label queries","description":"GetIssuesByLabel joins labels table but requires table lookup after using idx_labels_label.\n\n**Query (labels.go:165):**\n```sql\nSELECT ... FROM issues i\nJOIN labels l ON i.id = l.issue_id\nWHERE l.label = ?\n```\n\n**Problem:** Current idx_labels_label index doesn't cover issue_id, requiring row lookup.\n\n**Solution:** Add migration:\n```sql\nCREATE INDEX IF NOT EXISTS idx_labels_label_issue ON labels(label, issue_id);\n```\n\nThis is a covering index - query can be satisfied entirely from the index without touching the labels table rows.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-22T22:58:51.485354-08:00","updated_at":"2025-12-22T23:15:13.839904-08:00","closed_at":"2025-12-22T23:15:13.839904-08:00","close_reason":"Implemented in migration 026_additional_indexes.go","dependencies":[{"issue_id":"bd-jke6","depends_on_id":"bd-h0we","type":"discovered-from","created_at":"2025-12-22T22:58:51.485984-08:00","created_by":"daemon"}]} {"id":"bd-jv4w","title":"Phase 1.2: Separate bdt executable - Initial structure","description":"Create minimal bdt command structure completely separate from bd. Must not share code, config, or database.\n\n## Subtasks\n1. Create cmd/bdt/ directory with main.go\n2. Implement bdt version, help, and status commands\n3. Configure separate database location: $HOME/.bdt/ (not $HOME/.beads/)\n4. Create separate issues file: issues.toon (not issues.jsonl)\n5. Update build system:\n - Makefile: Add bdt target\n - .goreleaser.yml: Add bdt binary config\n\n## Files to Create\n- cmd/bdt/main.go - Entry point\n- cmd/bdt/version.go - Version handling\n- cmd/bdt/help.go - Help text (separate from bd)\n\n## Success Criteria\n- `make build` produces both `bd` and `bdt` executables\n- `bdt version` shows distinct version output from bd\n- `bdt --help` shows distinct help text\n- bdt uses $HOME/.bdt/ directory (verify with `bdt info`)\n- bd and bdt completely isolated (no shared imports beyond stdlib)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T11:48:34.866877282-07:00","updated_at":"2025-12-19T12:59:11.389296015-07:00","closed_at":"2025-12-19T12:59:11.389296015-07:00"} -{"id":"bd-jvu","title":"Add bd update --parent flag to change issue parent","description":"Allow changing an issue's parent with bd update --parent \u003cnew-parent-id\u003e. Useful for reorganizing tasks under different epics or moving issues between hierarchies. Should update the parent-child dependency relationship.","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-17T22:24:07.274485-08:00","updated_at":"2025-12-17T22:34:07.318938-08:00","closed_at":"2025-12-17T22:34:07.318938-08:00"} +{"id":"bd-jvu","title":"Add bd update --parent flag to change issue parent","description":"Allow changing an issue's parent with bd update --parent \u003cnew-parent-id\u003e. Useful for reorganizing tasks under different epics or moving issues between hierarchies. Should update the parent-child dependency relationship.","status":"tombstone","priority":3,"issue_type":"feature","created_at":"2025-12-17T22:24:07.274485-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} {"id":"bd-kptp","title":"Merge: bd-qioh","description":"branch: polecat/Errata\ntarget: main\nsource_issue: bd-qioh\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-23T13:46:08.832073-08:00","updated_at":"2025-12-23T19:12:08.350136-08:00","closed_at":"2025-12-23T19:12:08.350136-08:00","close_reason":"Stale merge-requests from orphaned polecat branches - refinery not processing"} {"id":"bd-kpy","title":"Sync race: rebase-based divergence recovery resurrects tombstones","description":"## Problem\nWhen two repos sync simultaneously, tombstones can be resurrected:\n\n1. Repo A deletes issue (creates tombstone), pushes to sync branch\n2. Repo B (with 'closed' status) exports and tries to push\n3. Push fails (non-fast-forward)\n4. fetchAndRebaseInWorktree does git rebase\n5. Git rebase applies B's 'closed' patch on top of A's 'tombstone'\n6. TEXT-level rebase doesn't invoke beads merge driver\n7. 'closed' overwrites 'tombstone' = resurrection\n\n## Root Cause\nCommitToSyncBranch uses git rebase for divergence recovery, but rebase is text-level, not content-level. The proper content-level merge in PullFromSyncBranch handles tombstones correctly, but it runs AFTER the problematic push.\n\n## Proposed Fix\nOption 1: Don't push in CommitToSyncBranch - let PullFromSyncBranch handle merge+push\nOption 2: Replace git rebase with content-level merge in fetchAndRebaseInWorktree\nOption 3: Reorder sync steps: Export ā†’ Pull/Merge ā†’ Commit ā†’ Push\n\n## Workaround Applied\nExcluded tombstones from orphan detection warnings (commit 1e97d9cc).\n\nSee also: bd-3852 (Add orphan detection migration)","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-17T23:29:33.049272-08:00","updated_at":"2025-12-24T22:41:09.184574-08:00","closed_at":"2025-12-24T22:41:09.184574-08:00","close_reason":"Fixed by replacing git rebase with content-level merge in divergence recovery"} {"id":"bd-kqo1","title":"Show pin indicator in bd list output","description":"Add a visual indicator (e.g., pin emoji or [P] marker) for pinned issues in bd list output so users can easily identify them.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-18T23:33:47.402549-08:00","updated_at":"2025-12-21T11:30:27.272768-08:00","closed_at":"2025-12-21T11:30:27.272768-08:00","close_reason":"Already implemented - šŸ“Œ emoji shown for pinned issues in bd list output","dependencies":[{"issue_id":"bd-kqo1","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.771791-08:00","created_by":"daemon"},{"issue_id":"bd-kqo1","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.985271-08:00","created_by":"daemon"}]} @@ -340,7 +340,7 @@ {"id":"bd-llfl","title":"Improve test coverage for cmd/bd CLI (26.2% ā†’ 50%)","description":"The main CLI package (cmd/bd) has only 26.2% test coverage. CLI commands should have at least 50% coverage to ensure reliability.\n\nKey areas with low/no coverage:\n- daemon_autostart.go (multiple 0% functions)\n- compact.go (several 0% functions)\n- Various command handlers\n\nCurrent coverage: 26.2%\nTarget coverage: 50%","notes":"## Progress Update (2025-12-23)\n\n### Tests Added\nAdded 683 lines of new tests across 3 files:\n- cmd/bd/daemon_config_test.go (144 lines)\n- cmd/bd/utils_test.go (484 lines) \n- cmd/bd/autostart_test.go (55 additional lines)\n\n### Functions Now Tested\n- daemon_config.go: ensureBeadsDir, getPIDFilePath, getLogFilePath, getSocketPathForPID\n- daemon_autostart.go: determineSocketPath, isDaemonRunningQuiet\n- activity.go: printEvent\n- cleanup.go: showCleanupDeprecationHint\n- upgrade.go: pluralize\n- wisp.go: formatTimeAgo\n- list.go: pinIndicator, sortIssues\n- hooks.go: FormatHookWarnings, isRebaseInProgress, hasBeadsJSONL\n- template.go: extractIDSuffix\n- thanks.go: getContributorsSorted\n\n### Coverage Results\n- Before: 22.5%\n- After: 23.1%\n- Delta: +0.6%\n\n### Remaining Work\nMost remaining untested code (77%) involves:\n1. Daemon/RPC operations (runDaemonLoop, tryAutoStartDaemon, etc.)\n2. Command handlers that require database/daemon setup\n3. Git operations (runPreCommitHook, runPostMergeHook, etc.)\n\nTo reach 50%, would need to:\n- Add integration tests with mocked daemon\n- Add scripttest tests for command handlers\n- Add more database-dependent tests\n\nCommit: 4f949c19","status":"in_progress","priority":2,"issue_type":"task","assignee":"beads/charlie","created_at":"2025-12-13T20:43:03.123341-08:00","updated_at":"2025-12-23T22:45:57.860498-08:00"} {"id":"bd-lo4","title":"Test pinned issue","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-18T21:44:49.031385-08:00","updated_at":"2025-12-18T21:47:25.055109-08:00","deleted_at":"2025-12-18T21:47:25.055109-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} {"id":"bd-lsv4","title":"GH#444: Fix inconsistent status naming in_progress vs in-progress","description":"Documentation uses in-progress (hyphen) but code expects in_progress (underscore). Update all docs to use canonical in_progress. See GitHub issue #444.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:14.349425-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-lw0x","title":"Fix bd sync race condition with daemon causing dirty working directory","description":"After bd sync completes with sync.branch mode, subsequent bd commands or daemon file watcher would see a hash mismatch and trigger auto-import, which then schedules re-export, dirtying the working directory.\n\n**Root cause:**\n1. bd sync exports JSONL with NEW content (hash H1)\n2. bd sync updates jsonl_content_hash = H1 in DB\n3. bd sync restores JSONL from HEAD (OLD content, hash H0)\n4. Now: file hash = H0, DB hash = H1 (MISMATCH)\n5. Daemon or next CLI command sees mismatch, imports from OLD JSONL\n6. Import triggers re-export ā†’ file is dirty\n\n**Fix:**\nAfter restoreBeadsDirFromBranch(), update jsonl_content_hash to match the restored file's hash. This ensures daemon and CLI see file hash = DB hash ā†’ no spurious import/export cycle.\n\nRelated: bd-c83r (multiple daemon prevention)","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-13T06:42:17.130839-08:00","updated_at":"2025-12-13T06:43:33.329042-08:00","closed_at":"2025-12-13T06:43:33.329042-08:00"} +{"id":"bd-lw0x","title":"Fix bd sync race condition with daemon causing dirty working directory","description":"After bd sync completes with sync.branch mode, subsequent bd commands or daemon file watcher would see a hash mismatch and trigger auto-import, which then schedules re-export, dirtying the working directory.\n\n**Root cause:**\n1. bd sync exports JSONL with NEW content (hash H1)\n2. bd sync updates jsonl_content_hash = H1 in DB\n3. bd sync restores JSONL from HEAD (OLD content, hash H0)\n4. Now: file hash = H0, DB hash = H1 (MISMATCH)\n5. Daemon or next CLI command sees mismatch, imports from OLD JSONL\n6. Import triggers re-export ā†’ file is dirty\n\n**Fix:**\nAfter restoreBeadsDirFromBranch(), update jsonl_content_hash to match the restored file's hash. This ensures daemon and CLI see file hash = DB hash ā†’ no spurious import/export cycle.\n\nRelated: bd-c83r (multiple daemon prevention)","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-13T06:42:17.130839-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-lxzx","title":"Add close_reason to JSONL export format documentation","description":"PR #551 now persists close_reason to the database, but there's a question about whether this field should be exported to JSONL format.\n\n## Current State\n- close_reason is stored in issues.close_reason column\n- close_reason is also stored in events table (audit trail)\n- The JSONL export format may or may not include close_reason\n\n## Questions\n1. Should close_reason be exported to JSONL format?\n2. If yes, where should it go (root level or nested in events)?\n3. Should there be any special handling to avoid duplication?\n4. How should close_reason be handled during JSONL import?\n\n## Why This Matters\n- JSONL is the git-friendly sync format\n- Other beads instances import from JSONL\n- close_reason is meaningful data that should be preserved across clones\n\n## Suggested Action\n- Check if close_reason is currently exported in JSONL\n- If not, add it to the export schema\n- Document the field in JSONL format spec\n- Add tests for round-trip (export -\u003e import -\u003e verify close_reason)","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:17.414916-08:00","updated_at":"2025-12-14T14:25:17.414916-08:00","dependencies":[{"issue_id":"bd-lxzx","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:17.416131-08:00","created_by":"stevey","metadata":"{}"}]} {"id":"bd-lz49","title":"Add gate fields: await_type, await_id, timeout, waiters","description":"Add gate-specific fields to the Issue type.\n\n## New Fields\n- await_type: string - Type of condition (gh:run, gh:pr, timer, human, mail)\n- await_id: string - Identifier for the condition\n- timeout: duration - Max time to wait before escalation\n- waiters: []string - Mail addresses to notify when gate clears\n\n## Implementation\n- Add fields to Issue struct in internal/types/types.go\n- Update SQLite schema for new columns\n- Add JSONL serialization/deserialization\n- Update import/export logic","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-23T11:44:32.720196-08:00","updated_at":"2025-12-23T12:00:03.837691-08:00","closed_at":"2025-12-23T12:00:03.837691-08:00","close_reason":"Gate fields added to Issue struct, ComputeContentHash, SQLite migration created, all storage queries updated","dependencies":[{"issue_id":"bd-lz49","depends_on_id":"bd-udsi","type":"parent-child","created_at":"2025-12-23T11:44:52.738823-08:00","created_by":"daemon"},{"issue_id":"bd-lz49","depends_on_id":"bd-2v0f","type":"blocks","created_at":"2025-12-23T11:44:56.269351-08:00","created_by":"daemon"}]} {"id":"bd-m0tl","title":"bd create -f crashes with nil pointer dereference","description":"GitHub issue #674. The markdown import feature crashes at markdown.go:338 because global variables (store, ctx, actor) aren't initialized when createIssuesFromMarkdown is called. The function uses globals set by cobra command framework but is being called before they're ready. Need to either initialize globals at start of function or pass them as parameters.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-21T14:35:14.813012-08:00","updated_at":"2025-12-21T15:41:14.600953-08:00","closed_at":"2025-12-21T15:41:14.600953-08:00","close_reason":"Fixed: added nil check for store in createIssuesFromMarkdown"} @@ -349,11 +349,11 @@ {"id":"bd-m964","title":"Consider FTS5 for text search at scale","description":"SearchIssues uses LIKE patterns for text search which can't use indexes.\n\n**Current query (queries.go:1475-1477):**\n```sql\n(title LIKE ? OR description LIKE ? OR id LIKE ?)\n```\n\n**Problem:** Full table scan on every text search. At 100K+ issues, this becomes slow.\n\n**SQLite FTS5 solution:**\n```sql\nCREATE VIRTUAL TABLE issues_fts USING fts5(\n id, title, description, design, notes,\n content='issues',\n content_rowid='rowid'\n);\n\n-- Triggers to keep FTS in sync\nCREATE TRIGGER issues_ai AFTER INSERT ON issues BEGIN\n INSERT INTO issues_fts(rowid, id, title, description, design, notes)\n VALUES (new.rowid, new.id, new.title, new.description, new.design, new.notes);\nEND;\n-- (similar for UPDATE, DELETE)\n```\n\n**Trade-offs:**\n- Database size increase (~30-50% for text content)\n- Additional write overhead (trigger execution)\n- Better search capabilities (ranking, phrase search)\n\n**Decision needed:** Is full-text search a priority feature? Current LIKE search may be acceptable for most use cases.\n\n**Benchmark first:** Measure SearchIssues at 100K scale before implementing.","status":"open","priority":4,"issue_type":"feature","created_at":"2025-12-22T22:58:56.466121-08:00","updated_at":"2025-12-22T22:58:56.466121-08:00","dependencies":[{"issue_id":"bd-m964","depends_on_id":"bd-h0we","type":"discovered-from","created_at":"2025-12-22T22:58:56.466764-08:00","created_by":"daemon"}]} {"id":"bd-mh4w","title":"Rename 'bond' to 'spawn' for instantiation","description":"Rename the bd mol bond command to bd mol spawn for instantiating protos.\n \n- Rename molBondCmd to molSpawnCmd\n- Update command Use/Short/Long descriptions \n- Keep 'bond' available for the new bonding feature\n- Update all documentation references\n- Add 'protomolecule' as easter egg alias for 'proto'","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-21T00:58:44.529026-08:00","updated_at":"2025-12-21T01:19:42.942819-08:00","closed_at":"2025-12-21T01:19:42.942819-08:00","close_reason":"Renamed 'bond' to 'spawn' in mol.go, updated all user-facing messages and help text","dependencies":[{"issue_id":"bd-mh4w","depends_on_id":"bd-o5xe","type":"parent-child","created_at":"2025-12-21T00:59:51.167902-08:00","created_by":"daemon"}]} {"id":"bd-mql4","title":"getLocalSyncBranch silently ignores YAML parse errors","description":"In autoimport.go:170-172, YAML parsing errors are silently ignored. If a user has malformed YAML in config.yaml, sync-branch will just silently be empty with no feedback.\n\nRecommendation: Add debug logging since this function is only called during auto-import, and debugging silent failures is painful.\n\nAdd: debug.Logf(\"Warning: failed to parse config.yaml: %v\", err)","status":"open","priority":4,"issue_type":"task","created_at":"2025-12-07T02:03:44.217728-08:00","updated_at":"2025-12-07T02:03:44.217728-08:00"} -{"id":"bd-muw","title":"Add empty tasks validation in workflow create","description":"workflow.go:321 will panic if wf.Tasks is empty. Add validation that len(wf.Tasks) \u003e 0 before accessing wf.Tasks[0].","status":"closed","priority":3,"issue_type":"bug","created_at":"2025-12-17T22:23:00.75707-08:00","updated_at":"2025-12-17T22:34:07.281133-08:00","closed_at":"2025-12-17T22:34:07.281133-08:00"} +{"id":"bd-muw","title":"Add empty tasks validation in workflow create","description":"workflow.go:321 will panic if wf.Tasks is empty. Add validation that len(wf.Tasks) \u003e 0 before accessing wf.Tasks[0].","status":"tombstone","priority":3,"issue_type":"bug","created_at":"2025-12-17T22:23:00.75707-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-mv6h","title":"Add test coverage for external dep edge cases","description":"During code review of bd-zmmy, identified missing test coverage:\n\n1. RemoveDependency with external ref target (will fail - see bd-a3sj)\n2. GetBlockedIssues with mix of local and external blockers\n3. GetDependencyTree with external deps\n4. AddDependency cycle detection with external refs (should be skipped?)\n5. External dep resolution with WAL mode database\n6. External dep resolution when target project has no .beads directory\n7. External dep resolution with invalid external: format variations\n\nPriority 2 because bd-a3sj is a real bug that tests would catch.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-21T23:45:37.50093-08:00","updated_at":"2025-12-22T22:32:09.515096-08:00","closed_at":"2025-12-22T22:32:09.515096-08:00","close_reason":"Added test coverage: TestGetDependencyTreeExternalDeps (dep tree shows external deps), TestCycleDetectionWithExternalRefs (cycle detection ignores external refs), TestCheckExternalDepNoBeadsDirectory (handles missing .beads dir), TestCheckExternalDepInvalidFormats (handles various invalid formats). All edge cases from bd-mv6h description now covered.","dependencies":[{"issue_id":"bd-mv6h","depends_on_id":"bd-zmmy","type":"discovered-from","created_at":"2025-12-21T23:45:37.501495-08:00","created_by":"daemon"}]} {"id":"bd-n386","title":"Improve test coverage for internal/daemon (27.3% ā†’ 60%)","description":"The daemon package has only 27.3% test coverage. The daemon is critical for background operations and reliability.\n\nKey areas needing tests:\n- Daemon autostart logic\n- Socket handling\n- PID file management\n- Health checks\n\nCurrent coverage: 27.3%\nTarget coverage: 60%","status":"closed","priority":2,"issue_type":"task","assignee":"beads/echo","created_at":"2025-12-13T20:43:00.895238-08:00","updated_at":"2025-12-23T22:36:08.583672-08:00","closed_at":"2025-12-23T22:36:08.583672-08:00","close_reason":"Improved test coverage from 27.3% to 72.0%, exceeding the 60% target. Added discovery_unit_test.go with comprehensive unit tests for walkWithDepth, checkDaemonErrorFile, CleanupStaleSockets, findBeadsDirForWorkspace, StopDaemon, KillAllDaemons, discoverDaemon, DiscoverDaemons, and discoverDaemonsLegacy."} {"id":"bd-n3v","title":"Error committing to sync branch: failed to create worktree","description":"\u003e bd sync --no-daemon\nā†’ Exporting pending changes to JSONL...\nā†’ Committing changes to sync branch 'beads-sync'...\nError committing to sync branch: failed to create worktree: failed to create worktree parent directory: mkdir /var/home/matt/dev/beads/fix-ci/.git: not a directory","notes":"**Problem Diagnosed**: The `bd sync` command was failing with \"mkdir /var/home/matt/dev/beads/fix-ci/.git: not a directory\" because it was being executed from the wrong directory.\n\n**Root Cause**: The command was run from `/var/home/matt/dev/beads` (where the `fix-ci` worktree exists) instead of the main repository directory `/var/home/matt/dev/beads/main`. Since `fix-ci` is a git worktree with a `.git` file (not directory), the worktree creation logic failed when trying to create `\u003ccurrent_dir\u003e/.git/beads-worktrees/\u003cbranch\u003e`.\n\n**Solution Verified**: Execute `bd sync` from the main repository directory:\n```bash\ncd main \u0026\u0026 bd sync --dry-run\n```\n","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-05T15:25:24.514998248-07:00","updated_at":"2025-12-24T00:25:13.040406-08:00","closed_at":"2025-12-24T00:25:13.040406-08:00","close_reason":"Fixed in PR #641 (commit 81aa3016). The getBeadsWorktreePath function now uses git rev-parse --git-common-dir to correctly find the shared git directory, ensuring beads worktrees are created in the correct location regardless of repository structure (regular repos, worktrees, bare repos)."} -{"id":"bd-n4td","title":"Add warning when staleness check errors","description":"## Problem\n\nWhen ensureDatabaseFresh() calls CheckStaleness() and it errors (corrupted metadata, permission issues, etc.), we silently proceed with potentially stale data.\n\n**Location:** cmd/bd/staleness.go:27-32\n\n**Scenarios:**\n- Corrupted metadata table\n- Database locked by another process \n- Permission issues reading JSONL file\n- Invalid last_import_time format in DB\n\n## Current Code\n\n```go\nisStale, err := autoimport.CheckStaleness(ctx, store, dbPath)\nif err \\!= nil {\n // If we can't determine staleness, allow operation to proceed\n // (better to show potentially stale data than block user)\n return nil\n}\n```\n\n## Fix\n\n```go\nisStale, err := autoimport.CheckStaleness(ctx, store, dbPath)\nif err \\!= nil {\n fmt.Fprintf(os.Stderr, \"Warning: Could not verify database freshness: %v\\n\", err)\n fmt.Fprintf(os.Stderr, \"Proceeding anyway. Data may be stale.\\n\\n\")\n return nil\n}\n```\n\n## Impact\nMedium - users should know when staleness check fails\n\n## Effort\nEasy - 5 minutes","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-11-20T20:16:34.889997-05:00","updated_at":"2025-12-17T23:13:40.531031-08:00","closed_at":"2025-12-17T19:11:12.950618-08:00","dependencies":[{"issue_id":"bd-n4td","depends_on_id":"bd-2q6d","type":"blocks","created_at":"2025-11-20T20:18:20.154723-05:00","created_by":"stevey","metadata":"{}"}]} +{"id":"bd-n4td","title":"Add warning when staleness check errors","description":"## Problem\n\nWhen ensureDatabaseFresh() calls CheckStaleness() and it errors (corrupted metadata, permission issues, etc.), we silently proceed with potentially stale data.\n\n**Location:** cmd/bd/staleness.go:27-32\n\n**Scenarios:**\n- Corrupted metadata table\n- Database locked by another process \n- Permission issues reading JSONL file\n- Invalid last_import_time format in DB\n\n## Current Code\n\n```go\nisStale, err := autoimport.CheckStaleness(ctx, store, dbPath)\nif err \\!= nil {\n // If we can't determine staleness, allow operation to proceed\n // (better to show potentially stale data than block user)\n return nil\n}\n```\n\n## Fix\n\n```go\nisStale, err := autoimport.CheckStaleness(ctx, store, dbPath)\nif err \\!= nil {\n fmt.Fprintf(os.Stderr, \"Warning: Could not verify database freshness: %v\\n\", err)\n fmt.Fprintf(os.Stderr, \"Proceeding anyway. Data may be stale.\\n\\n\")\n return nil\n}\n```\n\n## Impact\nMedium - users should know when staleness check fails\n\n## Effort\nEasy - 5 minutes","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-11-20T20:16:34.889997-05:00","updated_at":"2025-12-25T01:21:01.952723-08:00","dependencies":[{"issue_id":"bd-n4td","depends_on_id":"bd-2q6d","type":"blocks","created_at":"2025-11-20T20:18:20.154723-05:00","created_by":"stevey","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-n5ug","title":"Merge: bd-au0.7","description":"branch: polecat/dementus\ntarget: main\nsource_issue: bd-au0.7\nrig: beads","status":"closed","priority":1,"issue_type":"merge-request","created_at":"2025-12-23T20:43:36.024341-08:00","updated_at":"2025-12-23T21:21:57.692158-08:00","closed_at":"2025-12-23T21:21:57.692158-08:00","close_reason":"stale - no code pushed"} {"id":"bd-n6fm","title":"witness Handoff","status":"pinned","priority":2,"issue_type":"task","created_at":"2025-12-23T04:35:02.675024-08:00","updated_at":"2025-12-24T17:38:31.554705-08:00"} {"id":"bd-n777","title":"Timer beads for scheduled agent callbacks","description":"## Problem\n\nAgents frequently need to wait for external events (CI completion, PR reviews, artifact builds) but have no good mechanism:\n- `sleep N` blocks and is unreliable (often times out at 8+ minutes)\n- Polling wastes context and is easy to forget\n- No way to survive session restarts\n\n## Proposal: Timer Beads\n\nA new bead type or field that represents a scheduled callback:\n\n### Creating timers\n```bash\nbd timer create --in 30s --callback \"Check CI run 12345\" --issue bd-xyz\nbd timer create --at \"2025-12-20T08:00:00\" --callback \"Morning standup\"\nbd timer create --in 5m --on-expire \"tmux send-keys -t dave 'bd show bd-xyz'\"\n```\n\n### Timer storage\n- Store in beads (survives restarts)\n- Fields: `expires_at`, `callback_description`, `on_expire_command`, `linked_issue`\n- Status: pending, fired, cancelled\n\n### Deacon integration\nThe Deacon daemon monitors timer beads:\n1. Wakes on next timer expiry\n2. Executes `on_expire` command (e.g., tmux send-keys to interrupt agent)\n3. Marks timer as fired\n4. Optionally updates linked issue\n\n### Use cases\n- CI monitoring: \"ping me when build completes\"\n- PR reviews: \"check back in 1 hour\"\n- Scheduled tasks: \"remind me at EOD to sync\"\n- Blocking waits: agent registers callback instead of sleeping\n\n## Acceptance criteria\n- [ ] Timer bead type or field design\n- [ ] `bd timer create/list/cancel` commands\n- [ ] Deacon timer monitoring loop\n- [ ] tmux integration for agent interrupts\n- [ ] Survives daemon restarts","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-19T23:05:33.051861-08:00","updated_at":"2025-12-21T17:19:48.087482-08:00","closed_at":"2025-12-21T17:19:48.087482-08:00","close_reason":"Will not implement - Gas Town uses a different approach for timed events"} @@ -366,7 +366,7 @@ {"id":"bd-nuh1","title":"GH#403: bd doctor --fix circular error message","description":"bd doctor --fix suggests running bd doctor --fix for deletions manifest issue. Fix to provide actual resolution. See GitHub issue #403.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:16.290018-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-nurq","title":"Implement bd mol current command","description":"Show what molecule the agent should currently be working on. Referenced by gt-um6q, gt-lz13. Needed for molecule navigation workflow in templates.","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-12-23T00:17:54.069983-08:00","updated_at":"2025-12-23T01:23:59.523404-08:00","closed_at":"2025-12-23T01:23:59.523404-08:00","close_reason":"Implementation already existed, added tests (TestGetMoleculeProgress, TestFindParentMolecule, TestAdvanceToNextStep*), rebuilt and installed binary"} {"id":"bd-o34a","title":"Design auto-squash behavior for wisps","description":"Explore the design space for automatic wisp squashing.\n\n**Context:**\nWisps are ephemeral molecules that should be squashed (digest) or burned (no trace)\nwhen complete. Currently this is manual. Should it be automatic?\n\n**Questions to answer:**\n1. When should auto-squash trigger?\n - On molecule completion?\n - On session end/handoff?\n - On patrol detection?\n \n2. What's the default summary for auto-squash?\n - Generic: 'Auto-squashed on completion'\n - Step-based: List closed steps\n - AI-generated: Require agent to provide\n\n3. Should this be configurable?\n - Per-molecule setting in formula?\n - Global config: auto_squash: true/false\n - Per-wisp flag at creation time?\n\n4. Who decides - Beads or Gas Town?\n - Beads: Provides operators (squash, burn)\n - Gas Town: Makes policy decisions\n - Proposal: GT patrol molecules call bd mol squash\n\n**Constraints:**\n- Don't lose important context (summary matters)\n- Don't create noise in digest history\n- Respect agent's intent (some wisps should burn, not squash)\n\n**Recommendation:**\nGas Town patrol molecules should have explicit squash/burn steps.\nBeads provides primitives, GT makes policy decisions.\nAuto-squash at Beads level is probably wrong layer.","status":"open","priority":4,"issue_type":"task","created_at":"2025-12-24T18:23:24.833877-08:00","updated_at":"2025-12-24T18:23:24.833877-08:00"} -{"id":"bd-o4qy","title":"Improve CheckStaleness error handling","description":"## Problem\n\nCheckStaleness returns 'false' (not stale) for multiple error conditions instead of returning errors. This masks problems.\n\n**Location:** internal/autoimport/autoimport.go:253-285\n\n## Edge Cases That Return False\n\n1. **Invalid last_import_time format** (line 259-262)\n2. **No JSONL file found** (line 267-277) \n3. **JSONL stat fails** (line 279-282)\n\n## Fix\n\nReturn errors for abnormal conditions:\n\n```go\nlastImportTime, err := time.Parse(time.RFC3339, lastImportStr)\nif err != nil {\n return false, fmt.Errorf(\"corrupted last_import_time: %w\", err)\n}\n\nif jsonlPath == \"\" {\n return false, fmt.Errorf(\"no JSONL file found\")\n}\n\nstat, err := os.Stat(jsonlPath)\nif err != nil {\n return false, fmt.Errorf(\"cannot stat JSONL: %w\", err)\n}\n```\n\n## Impact\nMedium - edge cases are rare but should be handled\n\n## Effort \n30 minutes - requires updating callers in RPC server","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-11-20T20:17:27.606219-05:00","updated_at":"2025-12-17T23:13:40.536905-08:00","closed_at":"2025-12-17T19:11:12.965289-08:00","dependencies":[{"issue_id":"bd-o4qy","depends_on_id":"bd-2q6d","type":"blocks","created_at":"2025-11-20T20:18:26.81065-05:00","created_by":"stevey","metadata":"{}"}]} +{"id":"bd-o4qy","title":"Improve CheckStaleness error handling","description":"## Problem\n\nCheckStaleness returns 'false' (not stale) for multiple error conditions instead of returning errors. This masks problems.\n\n**Location:** internal/autoimport/autoimport.go:253-285\n\n## Edge Cases That Return False\n\n1. **Invalid last_import_time format** (line 259-262)\n2. **No JSONL file found** (line 267-277) \n3. **JSONL stat fails** (line 279-282)\n\n## Fix\n\nReturn errors for abnormal conditions:\n\n```go\nlastImportTime, err := time.Parse(time.RFC3339, lastImportStr)\nif err != nil {\n return false, fmt.Errorf(\"corrupted last_import_time: %w\", err)\n}\n\nif jsonlPath == \"\" {\n return false, fmt.Errorf(\"no JSONL file found\")\n}\n\nstat, err := os.Stat(jsonlPath)\nif err != nil {\n return false, fmt.Errorf(\"cannot stat JSONL: %w\", err)\n}\n```\n\n## Impact\nMedium - edge cases are rare but should be handled\n\n## Effort \n30 minutes - requires updating callers in RPC server","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-11-20T20:17:27.606219-05:00","updated_at":"2025-12-25T01:21:01.952723-08:00","dependencies":[{"issue_id":"bd-o4qy","depends_on_id":"bd-2q6d","type":"blocks","created_at":"2025-11-20T20:18:26.81065-05:00","created_by":"stevey","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-o55a","title":"GH#509: bd doesn't find .beads when running from nested worktrees","description":"When worktrees are nested under main repo (.worktrees/feature/), bd stops at worktree git root instead of continuing to find .beads in parent. See GitHub issue #509 for detailed fix suggestion.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:20.281591-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-o5xe","title":"Molecule bonding: composable workflow templates","description":"Vision: Molecules should be composable like LEGO bricks or Mad Max war rig sections. Bonding lets you attach molecules together to create compound workflows.\n\nTHREE BONDING CONTEXTS:\n1. Template-time: bd mol bond A B ā†’ Create reusable compound proto\n2. Spawn-time: bd mol spawn A --attach B ā†’ Attach modules when instantiating \n3. Runtime: bd mol attach epic B ā†’ Add to running workflow\n\nBOND TYPES:\n- Sequential: B after A completes (feature ā†’ deploy)\n- Parallel: B runs alongside A (feature + docs)\n- Conditional: B only if A fails (feature ā†’ hotfix)\n\nBOND POINTS (Attachment Sites):\n- Default: B depends on A root epic completion\n- Explicit: --after issue-id for specific attachment\n- Future: Named bond points in proto definitions\n\nVARIABLE FLOW:\n- Shared namespace between bonded molecules\n- Warn on variable name conflicts\n- Future: explicit mapping with --map\n\nDATA MODEL: Issues track bonded_from to preserve compound lineage.\n\nSUCCESS CRITERIA:\n- Can bond two protos into a compound proto\n- Can spawn with --attach for on-the-fly composition\n- Can attach molecules to running workflows\n- Compound structure visible in bd mol show\n- Variables flow correctly between bonded molecules","design":"SIMPLIFIED API (per design review):\n\nCORE COMMANDS:\n- bd mol spawn \u003cproto\u003e - Instantiate proto ā†’ molecule\n- bd mol bond \u003cA\u003e \u003cB\u003e - Polymorphic bonding (any combination)\n- bd mol distill \u003cmol\u003e - Extract molecule ā†’ proto\n- bd mol show/catalog - Inspect\n\nBOND IS POLYMORPHIC:\n| bond A B | Result |\n|---------------|-------------------------------------|\n| proto + proto | compound proto |\n| proto + mol | spawn proto, attach to mol |\n| mol + proto | spawn proto, attach to mol |\n| mol + mol | join into compound molecule |\n\nBOND TYPES: sequential (default), parallel, conditional\n\nTERMINOLOGY:\n- Proto: Uninstantiated template (easter egg: 'protomolecule')\n- Molecule: Spawned instance of a proto\n- Compound: Result of bonding (proto or molecule)\n- Distill: Extract proto from ad-hoc epic","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-21T00:58:35.479009-08:00","updated_at":"2025-12-21T17:19:45.871164-08:00","closed_at":"2025-12-21T17:19:45.871164-08:00","close_reason":"All core bonding features implemented (6/7 children closed, 1 deferred for future polish)"} {"id":"bd-o7ik","title":"Priority: refactor mol.go then bd squash","description":"Two tasks:\n\n1. bd-cnwx - Refactor mol.go (1200+ lines, split by subcommand)\n2. bd-2vh3 - Ephemeral cleanup (bd cleanup --ephemeral)\n\nRefactor first - smaller, unblocks easier review of future mol work.\n\n- Mayor","status":"closed","priority":2,"issue_type":"message","assignee":"beads-dave","created_at":"2025-12-21T11:31:38.287244-08:00","updated_at":"2025-12-21T12:59:32.937472-08:00","closed_at":"2025-12-21T12:59:32.937472-08:00","close_reason":"mol.go refactor (bd-cnwx) done. Epic bd-2vh3 now has 5 tiered implementation tasks with dependencies."} @@ -383,28 +383,28 @@ {"id":"bd-otf4","title":"Code Review: PR #481 - Context Engineering Optimizations","description":"Comprehensive code review of the merged context engineering PR (PR #481) that reduces MCP context usage by 80-90%.\n\n## Summary\nThe PR successfully implements lazy tool schema loading and minimal issue models to reduce context window usage. Overall implementation is solid and well-tested.\n\n## Positive Findings\nāœ… Well-designed models (IssueMinimal, CompactedResult)\nāœ… Comprehensive test coverage (28 tests, all passing)\nāœ… Clear documentation and comments\nāœ… Backward compatibility preserved (show() still returns full Issue)\nāœ… Sensible defaults (COMPACTION_THRESHOLD=20, PREVIEW_COUNT=5)\nāœ… Tool catalog complete with all 15 tools documented\n\n## Issues Identified\nSee linked issues for specific followup tasks.\n\n## Context Engineering Architecture\n- discover_tools(): List tool names only (~500 bytes vs ~15KB)\n- get_tool_info(name): Get specific tool details on-demand\n- IssueMinimal: Lightweight model for list views (~80 bytes vs ~400 bytes)\n- CompactedResult: Auto-compacts results with \u003e20 issues\n- _to_minimal(): Conversion function (efficient, no N+1 issues)","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:24:13.523532-08:00","updated_at":"2025-12-14T14:24:13.523532-08:00"} {"id":"bd-otli","title":"Wait for CI to pass","description":"Monitor GitHub Actions - all checks must pass before release artifacts are built","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:03.022281-08:00","updated_at":"2025-12-20T00:49:51.928591-08:00","closed_at":"2025-12-20T00:25:52.635223-08:00","dependencies":[{"issue_id":"bd-otli","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.097564-08:00","created_by":"daemon"},{"issue_id":"bd-otli","depends_on_id":"bd-7tuu","type":"blocks","created_at":"2025-12-19T22:56:23.360436-08:00","created_by":"daemon"}]} {"id":"bd-p5za","title":"mol-christmas-launch: 3-day execution plan","description":"Christmas Launch Molecule - execute phases in order, survive restarts.\n\nPIN THIS BEAD. Check progress each session start.\n\n## Step: phase0-beads-foundation\nFix blocking issues before swarming:\n1. Verify gastown beads schema works: bd list --status=open\n2. Ensure bd mol bond exists (check bd-usro)\n3. Verify bd-2vh3 (squash) is filed\n\n## Step: phase1-polecat-loop\nSerial work on polecat execution:\n1. gt-9nf: Fresh polecats only\n2. gt-975: Molecule execution support\n3. gt-8v8: Refuse uncommitted work\nThen swarm: gt-e1y, gt-f8v, gt-eu9\nNeeds: phase0-beads-foundation\n\n## Step: phase2-refinery\nSerial work on refinery autonomy:\n1. gt-5gkd: Refinery CLAUDE.md\n2. gt-bj6f: Refinery context in gt prime\n3. gt-0qki: Refinery-Witness protocol\nNeeds: phase1-polecat-loop\n\n## Step: phase3-deacon\nHealth monitoring infrastructure:\n1. gt-5af.4: Simplify daemon\n2. gt-5af.7: Crew session patterns\n3. gt-976: Crew lifecycle\nNeeds: phase2-refinery\n\n## Step: phase4-code-review\nSelf-improvement flywheel:\n1. Define mol-code-review (gt-fjvo)\n2. Test on open MRs\n3. Integrate with Refinery\nNeeds: phase3-deacon\n\n## Step: phase5-polish\nDemo readiness:\n1. gt-b2hj: Find orphaned work\n2. Doctor checks\n3. Clean up open MRs\nNeeds: phase4-code-review\n\n## Step: verify-flywheel\nSuccess criteria:\n- gt spawn works with molecules\n- Refinery processes MRs autonomously\n- mol-code-review runs on a PR\n- bd cleanup --ephemeral works\nNeeds: phase5-polish","status":"closed","priority":0,"issue_type":"epic","created_at":"2025-12-20T21:20:02.462889-08:00","updated_at":"2025-12-21T17:23:25.471749-08:00","closed_at":"2025-12-21T17:23:25.471749-08:00","close_reason":"Beads portion complete (phase0-beads-foundation done). Gastown tracks remainder."} -{"id":"bd-pbh","title":"Release v0.30.4","description":"## Version Bump Workflow\n\nCoordinating release from 0.30.3 to 0.30.4.\n\n### Components Updated\n- Go CLI (cmd/bd/version.go)\n- Claude Plugin (.claude-plugin/*.json)\n- MCP Server (integrations/beads-mcp/)\n- npm Package (npm-package/package.json)\n- Git hooks (cmd/bd/templates/hooks/)\n\n### Release Channels\n- GitHub Releases (GoReleaser)\n- PyPI (beads-mcp)\n- npm (@beads/cli)\n- Homebrew (homebrew-beads tap)\n","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-17T21:19:10.926133-08:00","updated_at":"2025-12-17T21:46:46.192948-08:00","closed_at":"2025-12-17T21:46:46.192948-08:00","labels":["release","v0.30.4","workflow"]} -{"id":"bd-pbh.1","title":"Update cmd/bd/version.go to 0.30.4","description":"Update the Version constant in cmd/bd/version.go:\n```go\nVersion = \"0.30.4\"\n```\n\n\n```verify\ngrep -q 'Version = \"0.30.4\"' cmd/bd/version.go\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.9462-08:00","updated_at":"2025-12-17T21:46:46.20387-08:00","closed_at":"2025-12-17T21:46:46.20387-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.1","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.946633-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.10","title":"Run check-versions.sh - all must pass","description":"Run the version consistency check:\n```bash\n./scripts/check-versions.sh\n```\n\nAll versions must match 0.30.4.\n\n\n```verify\n./scripts/check-versions.sh\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.047311-08:00","updated_at":"2025-12-17T21:46:46.28316-08:00","closed_at":"2025-12-17T21:46:46.28316-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.047888-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.1","type":"blocks","created_at":"2025-12-17T21:19:11.159084-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.4","type":"blocks","created_at":"2025-12-17T21:19:11.168248-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.5","type":"blocks","created_at":"2025-12-17T21:19:11.177869-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.6","type":"blocks","created_at":"2025-12-17T21:19:11.187629-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.7","type":"blocks","created_at":"2025-12-17T21:19:11.199955-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.8","type":"blocks","created_at":"2025-12-17T21:19:11.211479-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.9","type":"blocks","created_at":"2025-12-17T21:19:11.224059-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.11","title":"Commit changes and create v0.30.4 tag","description":"```bash\ngit add -A\ngit commit -m \"chore: Bump version to 0.30.4\"\ngit tag -a v0.30.4 -m \"Release v0.30.4\"\n```\n\n\n```verify\ngit describe --tags --exact-match HEAD 2\u003e/dev/null | grep -q 'v0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.056575-08:00","updated_at":"2025-12-17T21:46:46.292166-08:00","closed_at":"2025-12-17T21:46:46.292166-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.056934-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh.10","type":"blocks","created_at":"2025-12-17T21:19:11.234175-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh.2","type":"blocks","created_at":"2025-12-17T21:19:11.245316-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh.3","type":"blocks","created_at":"2025-12-17T21:19:11.255362-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.12","title":"Push commit and tag to origin","description":"```bash\ngit push origin main\ngit push origin v0.30.4\n```\n\nThis triggers GitHub Actions:\n- GoReleaser build\n- PyPI publish\n- npm publish\n\n\n```verify\ngit ls-remote origin refs/tags/v0.30.4 | grep -q 'v0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.066074-08:00","updated_at":"2025-12-17T21:46:46.301948-08:00","closed_at":"2025-12-17T21:46:46.301948-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.12","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.066442-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.12","depends_on_id":"bd-pbh.11","type":"blocks","created_at":"2025-12-17T21:19:11.265986-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.13","title":"Monitor GoReleaser CI job","description":"Watch the GoReleaser action:\nhttps://github.com/steveyegge/beads/actions/workflows/release.yml\n\nShould complete in ~10 minutes and create:\n- GitHub Release with binaries for all platforms\n- Checksums and signatures\n\nCheck status:\n```bash\ngh run list --workflow=release.yml -L 1\ngh run watch # to monitor live\n```\n\nVerify release exists:\n```bash\ngh release view v0.30.4\n```\n\n\n```verify\ngh release view v0.30.4 --json tagName -q .tagName | grep -q 'v0.30.4'\n```","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.074476-08:00","updated_at":"2025-12-17T21:46:46.311506-08:00","closed_at":"2025-12-17T21:46:46.311506-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.13","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.074833-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.13","depends_on_id":"bd-pbh.12","type":"blocks","created_at":"2025-12-17T21:19:11.279092-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.14","title":"Monitor PyPI publish","description":"Watch the PyPI publish action:\nhttps://github.com/steveyegge/beads/actions/workflows/pypi-publish.yml\n\nVerify at: https://pypi.org/project/beads-mcp/0.30.4/\n\nCheck:\n```bash\npip index versions beads-mcp 2\u003e/dev/null | grep -q '0.30.4'\n```\n\n\n```verify\npip index versions beads-mcp 2\u003e/dev/null | grep -q '0.30.4' || curl -s https://pypi.org/pypi/beads-mcp/json | jq -e '.releases[\"0.30.4\"]'\n```","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.083809-08:00","updated_at":"2025-12-17T21:46:46.320922-08:00","closed_at":"2025-12-17T21:46:46.320922-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.14","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.084126-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.14","depends_on_id":"bd-pbh.12","type":"blocks","created_at":"2025-12-17T21:19:11.289698-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.15","title":"Monitor npm publish","description":"Watch the npm publish action:\nhttps://github.com/steveyegge/beads/actions/workflows/npm-publish.yml\n\nVerify at: https://www.npmjs.com/package/@anthropics/claude-code-beads-plugin/v/0.30.4\n\nCheck:\n```bash\nnpm view @anthropics/claude-code-beads-plugin@0.30.4 version\n```\n\n\n```verify\nnpm view @anthropics/claude-code-beads-plugin@0.30.4 version 2\u003e/dev/null | grep -q '0.30.4'\n```","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.091806-08:00","updated_at":"2025-12-17T21:46:46.333213-08:00","closed_at":"2025-12-17T21:46:46.333213-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.15","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.092205-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.15","depends_on_id":"bd-pbh.12","type":"blocks","created_at":"2025-12-17T21:19:11.301843-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.16","title":"Update Homebrew formula","description":"After GoReleaser completes, the Homebrew tap should be auto-updated.\n\nIf manual update needed:\n```bash\n./scripts/update-homebrew.sh v0.30.4\n```\n\nOr manually update steveyegge/homebrew-beads with new SHA256.\n\nVerify:\n```bash\nbrew update\nbrew info beads\n```\n","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.100213-08:00","updated_at":"2025-12-17T21:46:46.341942-08:00","closed_at":"2025-12-17T21:46:46.341942-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.16","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.100541-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.16","depends_on_id":"bd-pbh.13","type":"blocks","created_at":"2025-12-17T21:19:11.312625-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.17","title":"Install 0.30.4 Go binary locally","description":"Rebuild and install the Go binary:\n```bash\ngo install ./cmd/bd\n# OR\nmake install\n```\n\nVerify:\n```bash\nbd --version\n```\n\n\n```verify\nbd --version 2\u003e\u00261 | grep -q '0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.108597-08:00","updated_at":"2025-12-17T21:46:46.352702-08:00","closed_at":"2025-12-17T21:46:46.352702-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.17","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.108917-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.17","depends_on_id":"bd-pbh.13","type":"blocks","created_at":"2025-12-17T21:19:11.322091-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.18","title":"Restart beads daemon","description":"Kill any running daemons so they pick up the new version:\n```bash\nbd daemons killall\n```\n\nStart fresh daemon:\n```bash\nbd list # triggers daemon start\n```\n\nVerify daemon version:\n```bash\nbd version --daemon\n```\n\n\n```verify\nbd version --daemon 2\u003e\u00261 | grep -q '0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.11636-08:00","updated_at":"2025-12-17T21:46:46.364842-08:00","closed_at":"2025-12-17T21:46:46.364842-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.18","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.116706-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.18","depends_on_id":"bd-pbh.17","type":"blocks","created_at":"2025-12-17T21:19:11.330411-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.19","title":"Install 0.30.4 MCP server locally","description":"Upgrade the MCP server (after PyPI publish):\n```bash\npip install --upgrade beads-mcp\n# OR if using uv:\nuv tool upgrade beads-mcp\n```\n\nVerify:\n```bash\npip show beads-mcp | grep Version\n```\n\n\n```verify\npip show beads-mcp 2\u003e/dev/null | grep -q 'Version: 0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.124496-08:00","updated_at":"2025-12-17T21:46:46.372989-08:00","closed_at":"2025-12-17T21:46:46.372989-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.19","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.124829-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.19","depends_on_id":"bd-pbh.14","type":"blocks","created_at":"2025-12-17T21:19:11.343558-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.2","title":"Update CHANGELOG.md for 0.30.4","description":"1. Change `## [Unreleased]` to `## [0.30.4] - 2025-12-17`\n2. Add new empty `## [Unreleased]` section at top\n3. Ensure all changes since 0.30.3 are documented\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.956332-08:00","updated_at":"2025-12-17T21:46:46.214512-08:00","closed_at":"2025-12-17T21:46:46.214512-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.2","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.95683-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.20","title":"Update git hooks","description":"Install the updated hooks:\n```bash\nbd hooks install\n```\n\nVerify hook version:\n```bash\ngrep 'bd-hooks-version' .git/hooks/pre-commit\n```\n\n\n```verify\ngrep -q 'bd-hooks-version: 0.30.4' .git/hooks/pre-commit 2\u003e/dev/null || echo 'Hooks may not be installed - verify manually'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.13198-08:00","updated_at":"2025-12-17T21:46:46.381519-08:00","closed_at":"2025-12-17T21:46:46.381519-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.20","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.132306-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.20","depends_on_id":"bd-pbh.17","type":"blocks","created_at":"2025-12-17T21:19:11.352288-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.21","title":"Final release verification","description":"Verify all release artifacts are accessible:\n\n- [ ] `bd --version` shows 0.30.4\n- [ ] `bd version --daemon` shows 0.30.4\n- [ ] GitHub release exists: https://github.com/steveyegge/beads/releases/tag/v0.30.4\n- [ ] `brew upgrade beads \u0026\u0026 bd --version` shows 0.30.4 (if using Homebrew)\n- [ ] `pip show beads-mcp` shows 0.30.4\n- [ ] npm package available at 0.30.4\n- [ ] `bd info --whats-new` shows 0.30.4 notes\n\nRun final checks:\n```bash\nbd --version\nbd version --daemon\npip show beads-mcp | grep Version\nbd info --whats-new\n```\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.141249-08:00","updated_at":"2025-12-17T21:46:46.390985-08:00","closed_at":"2025-12-17T21:46:46.390985-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.141549-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.18","type":"blocks","created_at":"2025-12-17T21:19:11.364839-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.19","type":"blocks","created_at":"2025-12-17T21:19:11.373656-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.20","type":"blocks","created_at":"2025-12-17T21:19:11.382-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.15","type":"blocks","created_at":"2025-12-17T21:19:11.389733-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.16","type":"blocks","created_at":"2025-12-17T21:19:11.398347-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.3","title":"Add 0.30.4 to info.go release notes","description":"Update cmd/bd/info.go versionChanges map with release notes for 0.30.4.\nInclude any workflow-impacting changes for --whats-new output.\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.966781-08:00","updated_at":"2025-12-17T21:46:46.222445-08:00","closed_at":"2025-12-17T21:46:46.222445-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.3","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.967287-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.3","depends_on_id":"bd-pbh.2","type":"blocks","created_at":"2025-12-17T21:19:11.149584-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.4","title":"Update .claude-plugin/plugin.json to 0.30.4","description":"Update version field in .claude-plugin/plugin.json:\n```json\n\"version\": \"0.30.4\"\n```\n\n\n```verify\njq -e '.version == \"0.30.4\"' .claude-plugin/plugin.json\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.976866-08:00","updated_at":"2025-12-17T21:46:46.23159-08:00","closed_at":"2025-12-17T21:46:46.23159-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.4","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.97729-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.5","title":"Update .claude-plugin/marketplace.json to 0.30.4","description":"Update version field in .claude-plugin/marketplace.json:\n```json\n\"version\": \"0.30.4\"\n```\n\n\n```verify\njq -e '.plugins[0].version == \"0.30.4\"' .claude-plugin/marketplace.json\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.985619-08:00","updated_at":"2025-12-17T21:46:46.239122-08:00","closed_at":"2025-12-17T21:46:46.239122-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.5","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.985942-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.6","title":"Update integrations/beads-mcp/pyproject.toml to 0.30.4","description":"Update version in pyproject.toml:\n```toml\nversion = \"0.30.4\"\n```\n\n\n```verify\ngrep -q 'version = \"0.30.4\"' integrations/beads-mcp/pyproject.toml\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.994004-08:00","updated_at":"2025-12-17T21:46:46.246574-08:00","closed_at":"2025-12-17T21:46:46.246574-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.6","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.994376-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.7","title":"Update beads_mcp/__init__.py to 0.30.4","description":"Update __version__ in integrations/beads-mcp/src/beads_mcp/__init__.py:\n```python\n__version__ = \"0.30.4\"\n```\n\n\n```verify\ngrep -q '__version__ = \"0.30.4\"' integrations/beads-mcp/src/beads_mcp/__init__.py\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.005334-08:00","updated_at":"2025-12-17T21:46:46.254885-08:00","closed_at":"2025-12-17T21:46:46.254885-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.7","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.005699-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.8","title":"Update npm-package/package.json to 0.30.4","description":"Update version field in npm-package/package.json:\n```json\n\"version\": \"0.30.4\"\n```\n\n\n```verify\njq -e '.version == \"0.30.4\"' npm-package/package.json\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.014905-08:00","updated_at":"2025-12-17T21:46:46.268821-08:00","closed_at":"2025-12-17T21:46:46.268821-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.8","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.01529-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.9","title":"Update hook templates to 0.30.4","description":"Update bd-hooks-version comment in all 4 hook templates:\n- cmd/bd/templates/hooks/pre-commit\n- cmd/bd/templates/hooks/post-merge\n- cmd/bd/templates/hooks/pre-push\n- cmd/bd/templates/hooks/post-checkout\n\nEach should have:\n```bash\n# bd-hooks-version: 0.30.4\n```\n\n\n```verify\ngrep -l 'bd-hooks-version: 0.30.4' cmd/bd/templates/hooks/* | wc -l | grep -q '4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.0248-08:00","updated_at":"2025-12-17T21:46:46.27561-08:00","closed_at":"2025-12-17T21:46:46.27561-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.9","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.025124-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh","title":"Release v0.30.4","description":"## Version Bump Workflow\n\nCoordinating release from 0.30.3 to 0.30.4.\n\n### Components Updated\n- Go CLI (cmd/bd/version.go)\n- Claude Plugin (.claude-plugin/*.json)\n- MCP Server (integrations/beads-mcp/)\n- npm Package (npm-package/package.json)\n- Git hooks (cmd/bd/templates/hooks/)\n\n### Release Channels\n- GitHub Releases (GoReleaser)\n- PyPI (beads-mcp)\n- npm (@beads/cli)\n- Homebrew (homebrew-beads tap)\n","status":"tombstone","priority":1,"issue_type":"epic","created_at":"2025-12-17T21:19:10.926133-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","labels":["release","v0.30.4","workflow"],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"epic"} +{"id":"bd-pbh.1","title":"Update cmd/bd/version.go to 0.30.4","description":"Update the Version constant in cmd/bd/version.go:\n```go\nVersion = \"0.30.4\"\n```\n\n\n```verify\ngrep -q 'Version = \"0.30.4\"' cmd/bd/version.go\n```","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.9462-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.1","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.946633-08:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pbh.10","title":"Run check-versions.sh - all must pass","description":"Run the version consistency check:\n```bash\n./scripts/check-versions.sh\n```\n\nAll versions must match 0.30.4.\n\n\n```verify\n./scripts/check-versions.sh\n```","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.047311-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.047888-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.1","type":"blocks","created_at":"2025-12-17T21:19:11.159084-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.4","type":"blocks","created_at":"2025-12-17T21:19:11.168248-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.5","type":"blocks","created_at":"2025-12-17T21:19:11.177869-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.6","type":"blocks","created_at":"2025-12-17T21:19:11.187629-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.7","type":"blocks","created_at":"2025-12-17T21:19:11.199955-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.8","type":"blocks","created_at":"2025-12-17T21:19:11.211479-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.9","type":"blocks","created_at":"2025-12-17T21:19:11.224059-08:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pbh.11","title":"Commit changes and create v0.30.4 tag","description":"```bash\ngit add -A\ngit commit -m \"chore: Bump version to 0.30.4\"\ngit tag -a v0.30.4 -m \"Release v0.30.4\"\n```\n\n\n```verify\ngit describe --tags --exact-match HEAD 2\u003e/dev/null | grep -q 'v0.30.4'\n```","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.056575-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.056934-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh.10","type":"blocks","created_at":"2025-12-17T21:19:11.234175-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh.2","type":"blocks","created_at":"2025-12-17T21:19:11.245316-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh.3","type":"blocks","created_at":"2025-12-17T21:19:11.255362-08:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pbh.12","title":"Push commit and tag to origin","description":"```bash\ngit push origin main\ngit push origin v0.30.4\n```\n\nThis triggers GitHub Actions:\n- GoReleaser build\n- PyPI publish\n- npm publish\n\n\n```verify\ngit ls-remote origin refs/tags/v0.30.4 | grep -q 'v0.30.4'\n```","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.066074-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.12","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.066442-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.12","depends_on_id":"bd-pbh.11","type":"blocks","created_at":"2025-12-17T21:19:11.265986-08:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pbh.13","title":"Monitor GoReleaser CI job","description":"Watch the GoReleaser action:\nhttps://github.com/steveyegge/beads/actions/workflows/release.yml\n\nShould complete in ~10 minutes and create:\n- GitHub Release with binaries for all platforms\n- Checksums and signatures\n\nCheck status:\n```bash\ngh run list --workflow=release.yml -L 1\ngh run watch # to monitor live\n```\n\nVerify release exists:\n```bash\ngh release view v0.30.4\n```\n\n\n```verify\ngh release view v0.30.4 --json tagName -q .tagName | grep -q 'v0.30.4'\n```","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.074476-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.13","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.074833-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.13","depends_on_id":"bd-pbh.12","type":"blocks","created_at":"2025-12-17T21:19:11.279092-08:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pbh.14","title":"Monitor PyPI publish","description":"Watch the PyPI publish action:\nhttps://github.com/steveyegge/beads/actions/workflows/pypi-publish.yml\n\nVerify at: https://pypi.org/project/beads-mcp/0.30.4/\n\nCheck:\n```bash\npip index versions beads-mcp 2\u003e/dev/null | grep -q '0.30.4'\n```\n\n\n```verify\npip index versions beads-mcp 2\u003e/dev/null | grep -q '0.30.4' || curl -s https://pypi.org/pypi/beads-mcp/json | jq -e '.releases[\"0.30.4\"]'\n```","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.083809-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.14","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.084126-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.14","depends_on_id":"bd-pbh.12","type":"blocks","created_at":"2025-12-17T21:19:11.289698-08:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pbh.15","title":"Monitor npm publish","description":"Watch the npm publish action:\nhttps://github.com/steveyegge/beads/actions/workflows/npm-publish.yml\n\nVerify at: https://www.npmjs.com/package/@anthropics/claude-code-beads-plugin/v/0.30.4\n\nCheck:\n```bash\nnpm view @anthropics/claude-code-beads-plugin@0.30.4 version\n```\n\n\n```verify\nnpm view @anthropics/claude-code-beads-plugin@0.30.4 version 2\u003e/dev/null | grep -q '0.30.4'\n```","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.091806-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.15","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.092205-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.15","depends_on_id":"bd-pbh.12","type":"blocks","created_at":"2025-12-17T21:19:11.301843-08:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pbh.16","title":"Update Homebrew formula","description":"After GoReleaser completes, the Homebrew tap should be auto-updated.\n\nIf manual update needed:\n```bash\n./scripts/update-homebrew.sh v0.30.4\n```\n\nOr manually update steveyegge/homebrew-beads with new SHA256.\n\nVerify:\n```bash\nbrew update\nbrew info beads\n```\n","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.100213-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.16","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.100541-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.16","depends_on_id":"bd-pbh.13","type":"blocks","created_at":"2025-12-17T21:19:11.312625-08:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pbh.17","title":"Install 0.30.4 Go binary locally","description":"Rebuild and install the Go binary:\n```bash\ngo install ./cmd/bd\n# OR\nmake install\n```\n\nVerify:\n```bash\nbd --version\n```\n\n\n```verify\nbd --version 2\u003e\u00261 | grep -q '0.30.4'\n```","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.108597-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.17","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.108917-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.17","depends_on_id":"bd-pbh.13","type":"blocks","created_at":"2025-12-17T21:19:11.322091-08:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pbh.18","title":"Restart beads daemon","description":"Kill any running daemons so they pick up the new version:\n```bash\nbd daemons killall\n```\n\nStart fresh daemon:\n```bash\nbd list # triggers daemon start\n```\n\nVerify daemon version:\n```bash\nbd version --daemon\n```\n\n\n```verify\nbd version --daemon 2\u003e\u00261 | grep -q '0.30.4'\n```","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.11636-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.18","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.116706-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.18","depends_on_id":"bd-pbh.17","type":"blocks","created_at":"2025-12-17T21:19:11.330411-08:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pbh.19","title":"Install 0.30.4 MCP server locally","description":"Upgrade the MCP server (after PyPI publish):\n```bash\npip install --upgrade beads-mcp\n# OR if using uv:\nuv tool upgrade beads-mcp\n```\n\nVerify:\n```bash\npip show beads-mcp | grep Version\n```\n\n\n```verify\npip show beads-mcp 2\u003e/dev/null | grep -q 'Version: 0.30.4'\n```","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.124496-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.19","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.124829-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.19","depends_on_id":"bd-pbh.14","type":"blocks","created_at":"2025-12-17T21:19:11.343558-08:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pbh.2","title":"Update CHANGELOG.md for 0.30.4","description":"1. Change `## [Unreleased]` to `## [0.30.4] - 2025-12-17`\n2. Add new empty `## [Unreleased]` section at top\n3. Ensure all changes since 0.30.3 are documented\n","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.956332-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.2","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.95683-08:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pbh.20","title":"Update git hooks","description":"Install the updated hooks:\n```bash\nbd hooks install\n```\n\nVerify hook version:\n```bash\ngrep 'bd-hooks-version' .git/hooks/pre-commit\n```\n\n\n```verify\ngrep -q 'bd-hooks-version: 0.30.4' .git/hooks/pre-commit 2\u003e/dev/null || echo 'Hooks may not be installed - verify manually'\n```","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.13198-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.20","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.132306-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.20","depends_on_id":"bd-pbh.17","type":"blocks","created_at":"2025-12-17T21:19:11.352288-08:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pbh.21","title":"Final release verification","description":"Verify all release artifacts are accessible:\n\n- [ ] `bd --version` shows 0.30.4\n- [ ] `bd version --daemon` shows 0.30.4\n- [ ] GitHub release exists: https://github.com/steveyegge/beads/releases/tag/v0.30.4\n- [ ] `brew upgrade beads \u0026\u0026 bd --version` shows 0.30.4 (if using Homebrew)\n- [ ] `pip show beads-mcp` shows 0.30.4\n- [ ] npm package available at 0.30.4\n- [ ] `bd info --whats-new` shows 0.30.4 notes\n\nRun final checks:\n```bash\nbd --version\nbd version --daemon\npip show beads-mcp | grep Version\nbd info --whats-new\n```\n","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.141249-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.141549-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.18","type":"blocks","created_at":"2025-12-17T21:19:11.364839-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.19","type":"blocks","created_at":"2025-12-17T21:19:11.373656-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.20","type":"blocks","created_at":"2025-12-17T21:19:11.382-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.15","type":"blocks","created_at":"2025-12-17T21:19:11.389733-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.16","type":"blocks","created_at":"2025-12-17T21:19:11.398347-08:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pbh.3","title":"Add 0.30.4 to info.go release notes","description":"Update cmd/bd/info.go versionChanges map with release notes for 0.30.4.\nInclude any workflow-impacting changes for --whats-new output.\n","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.966781-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.3","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.967287-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.3","depends_on_id":"bd-pbh.2","type":"blocks","created_at":"2025-12-17T21:19:11.149584-08:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pbh.4","title":"Update .claude-plugin/plugin.json to 0.30.4","description":"Update version field in .claude-plugin/plugin.json:\n```json\n\"version\": \"0.30.4\"\n```\n\n\n```verify\njq -e '.version == \"0.30.4\"' .claude-plugin/plugin.json\n```","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.976866-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.4","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.97729-08:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pbh.5","title":"Update .claude-plugin/marketplace.json to 0.30.4","description":"Update version field in .claude-plugin/marketplace.json:\n```json\n\"version\": \"0.30.4\"\n```\n\n\n```verify\njq -e '.plugins[0].version == \"0.30.4\"' .claude-plugin/marketplace.json\n```","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.985619-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.5","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.985942-08:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pbh.6","title":"Update integrations/beads-mcp/pyproject.toml to 0.30.4","description":"Update version in pyproject.toml:\n```toml\nversion = \"0.30.4\"\n```\n\n\n```verify\ngrep -q 'version = \"0.30.4\"' integrations/beads-mcp/pyproject.toml\n```","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.994004-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.6","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.994376-08:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pbh.7","title":"Update beads_mcp/__init__.py to 0.30.4","description":"Update __version__ in integrations/beads-mcp/src/beads_mcp/__init__.py:\n```python\n__version__ = \"0.30.4\"\n```\n\n\n```verify\ngrep -q '__version__ = \"0.30.4\"' integrations/beads-mcp/src/beads_mcp/__init__.py\n```","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.005334-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.7","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.005699-08:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pbh.8","title":"Update npm-package/package.json to 0.30.4","description":"Update version field in npm-package/package.json:\n```json\n\"version\": \"0.30.4\"\n```\n\n\n```verify\njq -e '.version == \"0.30.4\"' npm-package/package.json\n```","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.014905-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.8","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.01529-08:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pbh.9","title":"Update hook templates to 0.30.4","description":"Update bd-hooks-version comment in all 4 hook templates:\n- cmd/bd/templates/hooks/pre-commit\n- cmd/bd/templates/hooks/post-merge\n- cmd/bd/templates/hooks/pre-push\n- cmd/bd/templates/hooks/post-checkout\n\nEach should have:\n```bash\n# bd-hooks-version: 0.30.4\n```\n\n\n```verify\ngrep -l 'bd-hooks-version: 0.30.4' cmd/bd/templates/hooks/* | wc -l | grep -q '4'\n```","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.0248-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.9","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.025124-08:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-pdr2","title":"Consider backwards compatibility for ready() and list() return type change","description":"PR #481 changed the return types of `ready()` and `list()` from `list[Issue]` to `list[IssueMinimal] | CompactedResult`. This is a breaking change for MCP clients.\n\n## Impact Assessment\nBreaking change affects:\n- Any MCP client expecting `list[Issue]` from ready()\n- Any MCP client expecting `list[Issue]` from list()\n- Client code that accesses full Issue fields (description, design, acceptance_criteria, timestamps, dependencies, dependents)\n\n## Current Behavior\n- ready() returns `list[IssueMinimal] | CompactedResult`\n- list() returns `list[IssueMinimal] | CompactedResult`\n- show() still returns full `Issue` (good)\n\n## Considerations\n**Pros of current approach:**\n- Forces clients to use show() for full details (good for context efficiency)\n- Simple mental model (always use show for full data)\n- Documentation warns about this\n\n**Cons:**\n- Clients expecting list[Issue] will break\n- No graceful degradation option\n- No migration period\n\n## Potential Solutions\n1. Add optional parameter `full_details=false` to ready/list (would increase payload)\n2. Create separate tools: ready_minimal/list_minimal + ready_full/list_full\n3. Accept breaking change and document upgrade path (current approach)\n4. Version the MCP server and document migration guide\n\n## Recommendation\nCurrent approach (solution 3) is reasonable if:\n- Changelog clearly documents the breaking change\n- Migration guide provided to clients\n- Error handling is graceful for clients expecting specific fields","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:24:56.460465-08:00","updated_at":"2025-12-14T14:24:56.460465-08:00","dependencies":[{"issue_id":"bd-pdr2","depends_on_id":"bd-otf4","type":"discovered-from","created_at":"2025-12-14T14:24:56.461959-08:00","created_by":"stevey","metadata":"{}"}]} {"id":"bd-pe4s","title":"JSON test issue","description":"Line 1\nLine 2\nLine 3","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T16:14:36.969074-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-pgcs","title":"Clean up orphaned child issues (bd-cb64c226.*, bd-cbed9619.*)","description":"## Problem\n\nEvery bd command shows warnings about 12 orphaned child issues:\n- bd-cb64c226.1, .6, .8, .9, .10, .12, .13\n- bd-cbed9619.1, .2, .3, .4, .5\n\nThese are hierarchical IDs (parent.child format) where the parent issues no longer exist.\n\n## Impact\n\n- Clutters output of every bd command\n- Confusing for users\n- Indicates incomplete cleanup of deleted parent issues\n\n## Proposed Solution\n\n1. Delete the orphaned issues since their parents no longer exist:\n ```bash\n bd delete bd-cb64c226.1 bd-cb64c226.6 bd-cb64c226.8 ...\n ```\n\n2. Or convert them to top-level issues if they contain useful content\n\n## Investigation Needed\n\n- What were the parent issues bd-cb64c226 and bd-cbed9619?\n- Why were they deleted without their children?\n- Should bd delete cascade to children automatically?","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T23:06:17.240571-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} @@ -435,11 +435,11 @@ {"id":"bd-r46","title":"Support --reason flag in daemon mode for reopen command","description":"The reopen.go command has a TODO at line 61 to add reason as a comment once RPC supports AddComment. Currently --reason flag is ignored in daemon mode with a warning.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-11-21T18:55:10.773626-05:00","updated_at":"2025-12-21T21:47:15.43375-08:00","closed_at":"2025-12-21T21:47:15.43375-08:00","close_reason":"Already implemented in commit 78847147: reopen command now adds reason as comment in daemon mode via RPC AddComment"} {"id":"bd-r4sn","title":"Phase 2.5: TOON-based daemon sync","description":"Implement TOON-native daemon sync (replaces JSONL sync machinery).\n\n## Overview\nDaemon sync is the final integration point. Replace export/import/merge machinery with TOON-native sync, building on deletion tracking (2.3) and merge optimization (2.4).\n\n## Required Work\n\n### 2.5.1 TOON-based Daemon Sync\n- [ ] Understand current JSONL sync machinery (export.go, import.go, merge.go)\n- [ ] Replace export step with TOON encoding (EncodeTOON)\n- [ ] Replace import step with TOON decoding (DecodeTOON)\n- [ ] Replace merge step with TOON-aware 3-way merge\n- [ ] Update daemon auto-sync to read/write TOON\n- [ ] Verify 5-second debounce still works\n\n### 2.5.2 Deletion Sync Integration\n- [ ] Load deletions.toon during import phase\n- [ ] Apply deletions after merging issues\n- [ ] Ensure deletion TTL respects daemon schedule\n\n### 2.5.3 Testing\n- [ ] Unit tests for daemon sync with TOON\n- [ ] Integration tests with actual daemon operations\n- [ ] Multi-clone sync scenarios with concurrent edits\n- [ ] Performance comparison with JSONL sync\n- [ ] Long-running daemon stability tests\n\n## Success Criteria\n- Daemon reads/writes TOON format (not JSONL)\n- Sync latency comparable to JSONL (\u003c100ms)\n- All 70+ tests passing\n- bdt commands work seamlessly with daemon\n- Multi-clone sync scenarios work correctly","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T14:43:20.33132177-07:00","updated_at":"2025-12-21T14:42:25.274362-08:00","closed_at":"2025-12-21T14:42:25.274362-08:00","close_reason":"TOON approach declined","dependencies":[{"issue_id":"bd-r4sn","depends_on_id":"bd-uz8r","type":"blocks","created_at":"2025-12-19T14:43:20.347724699-07:00","created_by":"daemon"},{"issue_id":"bd-r4sn","depends_on_id":"bd-uwkp","type":"blocks","created_at":"2025-12-19T14:43:20.355379309-07:00","created_by":"daemon"}]} {"id":"bd-r6a","title":"Redesign workflow system: templates as native Beads","description":"## Problem\n\nThe current workflow system (YAML templates in cmd/bd/templates/workflows/) is architecturally flawed:\n\n1. **Out-of-band data plane** - YAML files are a parallel system outside Beads itself\n2. **Heavyweight DSL** - YAML is gross; even TOML would have been better, but neither is ideal\n3. **Not graph-native** - Beads IS already a dependency graph with priorities, so why reinvent it?\n4. **Can't use bd commands on templates** - They're opaque YAML, not viewable/editable Beads\n\n## The Right Design\n\n**Templates should be Beads themselves.**\n\nA \"workflow template\" should be:\n- An epic marked as a template (via label, type, or prefix like `tpl-`)\n- Child issues with dependencies between them (using normal bd dep)\n- Titles and descriptions containing `{{variable}}` placeholders\n- Normal priorities that control serialization order\n\n\"Instantiation\" becomes:\n1. Clone the template subgraph (epic + children + dependencies)\n2. Substitute variables in titles/descriptions\n3. Generate new IDs for all cloned issues\n4. Return the new epic ID\n\n## Benefits\n\n- **No YAML** - Templates are just Beads\n- **Use existing tools** - `bd show`, `bd edit`, `bd dep` work on templates\n- **Graph-native** - Dependencies are real Beads dependencies\n- **Simpler codebase** - Remove all the YAML parsing/workflow code\n- **Composable** - Templates can reference other templates\n\n## Tasks\n\n1. Delete the YAML workflow system code (revert recent push + remove existing workflow code)\n2. Design template marking convention (label? type? id prefix?)\n3. Implement `bd template create` or `bd clone --as-template`\n4. Implement `bd template instantiate \u003ctemplate-id\u003e --var key=value`\n5. Migrate version-bump workflow to native Beads template\n6. Update documentation","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-17T22:41:57.359643-08:00","updated_at":"2025-12-18T17:42:26.000769-08:00","closed_at":"2025-12-18T13:47:04.632525-08:00"} -{"id":"bd-r6a.1","title":"Revert/remove YAML workflow system","description":"Revert the recent commit and remove all YAML workflow code:\n\n1. `git revert aae8407a` (the commit we just pushed with workflow fixes)\n2. Remove `cmd/bd/templates/workflows/` directory\n3. Remove workflow.go or gut it to minimal stub\n4. Remove WorkflowTemplate types from internal/types/workflow.go\n5. Remove any workflow-related RPC handlers\n\nKeep only minimal scaffolding if needed for the new template system.","status":"closed","priority":0,"issue_type":"task","created_at":"2025-12-17T22:42:07.339684-08:00","updated_at":"2025-12-17T22:46:08.606088-08:00","closed_at":"2025-12-17T22:46:08.606088-08:00","dependencies":[{"issue_id":"bd-r6a.1","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:42:07.340117-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-r6a.2","title":"Implement subgraph cloning with variable substitution","description":"Core implementation of template instantiation:\n\n1. Add `bd template instantiate \u003ctemplate-id\u003e [--var key=value]...` command\n2. Implement subgraph loading:\n - Load template epic\n - Recursively load all children (and their children)\n - Load all dependencies between issues in the subgraph\n3. Implement variable substitution:\n - Scan titles and descriptions for `{{name}}` patterns\n - Replace with provided values\n - Error on missing required variables (or prompt interactively)\n4. Implement cloning:\n - Generate new IDs for all issues\n - Create cloned issues with substituted text\n - Remap and create dependencies\n5. Return the new epic ID\n\nConsider adding `--dry-run` flag to preview what would be created.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T22:43:25.179848-08:00","updated_at":"2025-12-17T23:02:29.034444-08:00","closed_at":"2025-12-17T23:02:29.034444-08:00","dependencies":[{"issue_id":"bd-r6a.2","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:25.180286-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-r6a.2","depends_on_id":"bd-r6a.1","type":"blocks","created_at":"2025-12-17T22:44:03.15413-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-r6a.3","title":"Create version-bump template as native Beads","description":"Migrate the version-bump workflow from YAML to a native Beads template:\n\n1. Create epic with template label: Release {{version}}\n2. Create child tasks for each step (update version files, changelog, commit, push, publish)\n3. Set up dependencies between tasks\n4. Add verification commands in task descriptions\n\nThis serves as both migration and validation of the new system.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T22:43:40.694931-08:00","updated_at":"2025-12-18T17:42:26.001149-08:00","closed_at":"2025-12-18T13:02:09.039457-08:00","dependencies":[{"issue_id":"bd-r6a.3","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:40.695392-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-r6a.3","depends_on_id":"bd-r6a.2","type":"blocks","created_at":"2025-12-17T22:44:03.311902-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-r6a.4","title":"Add bd template list command","description":"Add a convenience command to list available templates:\n\nbd template list\n\nThis is equivalent to 'bd list --label=template' but more discoverable.\nCould also show variable placeholders found in each template.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T22:43:47.525316-08:00","updated_at":"2025-12-17T23:02:45.700582-08:00","closed_at":"2025-12-17T23:02:45.700582-08:00","dependencies":[{"issue_id":"bd-r6a.4","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:47.525743-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-r6a.4","depends_on_id":"bd-r6a.2","type":"blocks","created_at":"2025-12-17T22:44:03.474353-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-r6a.5","title":"Update documentation for template system","description":"Update AGENTS.md and help text to document the new template system:\n\n- How to create a template (epic + template label + child issues)\n- How to define variables (just use {{name}} placeholders)\n- How to instantiate (bd template instantiate)\n- Migration from YAML workflows (if any users had custom ones)","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-17T22:43:55.461345-08:00","updated_at":"2025-12-18T17:42:26.001474-08:00","closed_at":"2025-12-18T13:46:53.446262-08:00","dependencies":[{"issue_id":"bd-r6a.5","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:55.461763-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-r6a.5","depends_on_id":"bd-r6a.3","type":"blocks","created_at":"2025-12-17T22:44:03.632404-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-r6a.5","depends_on_id":"bd-r6a.4","type":"blocks","created_at":"2025-12-17T22:44:03.788517-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-r6a.1","title":"Revert/remove YAML workflow system","description":"Revert the recent commit and remove all YAML workflow code:\n\n1. `git revert aae8407a` (the commit we just pushed with workflow fixes)\n2. Remove `cmd/bd/templates/workflows/` directory\n3. Remove workflow.go or gut it to minimal stub\n4. Remove WorkflowTemplate types from internal/types/workflow.go\n5. Remove any workflow-related RPC handlers\n\nKeep only minimal scaffolding if needed for the new template system.","status":"tombstone","priority":0,"issue_type":"task","created_at":"2025-12-17T22:42:07.339684-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","dependencies":[{"issue_id":"bd-r6a.1","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:42:07.340117-08:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-r6a.2","title":"Implement subgraph cloning with variable substitution","description":"Core implementation of template instantiation:\n\n1. Add `bd template instantiate \u003ctemplate-id\u003e [--var key=value]...` command\n2. Implement subgraph loading:\n - Load template epic\n - Recursively load all children (and their children)\n - Load all dependencies between issues in the subgraph\n3. Implement variable substitution:\n - Scan titles and descriptions for `{{name}}` patterns\n - Replace with provided values\n - Error on missing required variables (or prompt interactively)\n4. Implement cloning:\n - Generate new IDs for all issues\n - Create cloned issues with substituted text\n - Remap and create dependencies\n5. Return the new epic ID\n\nConsider adding `--dry-run` flag to preview what would be created.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-17T22:43:25.179848-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","dependencies":[{"issue_id":"bd-r6a.2","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:25.180286-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-r6a.2","depends_on_id":"bd-r6a.1","type":"blocks","created_at":"2025-12-17T22:44:03.15413-08:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-r6a.3","title":"Create version-bump template as native Beads","description":"Migrate the version-bump workflow from YAML to a native Beads template:\n\n1. Create epic with template label: Release {{version}}\n2. Create child tasks for each step (update version files, changelog, commit, push, publish)\n3. Set up dependencies between tasks\n4. Add verification commands in task descriptions\n\nThis serves as both migration and validation of the new system.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-17T22:43:40.694931-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","dependencies":[{"issue_id":"bd-r6a.3","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:40.695392-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-r6a.3","depends_on_id":"bd-r6a.2","type":"blocks","created_at":"2025-12-17T22:44:03.311902-08:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-r6a.4","title":"Add bd template list command","description":"Add a convenience command to list available templates:\n\nbd template list\n\nThis is equivalent to 'bd list --label=template' but more discoverable.\nCould also show variable placeholders found in each template.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-17T22:43:47.525316-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","dependencies":[{"issue_id":"bd-r6a.4","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:47.525743-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-r6a.4","depends_on_id":"bd-r6a.2","type":"blocks","created_at":"2025-12-17T22:44:03.474353-08:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-r6a.5","title":"Update documentation for template system","description":"Update AGENTS.md and help text to document the new template system:\n\n- How to create a template (epic + template label + child issues)\n- How to define variables (just use {{name}} placeholders)\n- How to instantiate (bd template instantiate)\n- Migration from YAML workflows (if any users had custom ones)","status":"tombstone","priority":3,"issue_type":"task","created_at":"2025-12-17T22:43:55.461345-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","dependencies":[{"issue_id":"bd-r6a.5","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:55.461763-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-r6a.5","depends_on_id":"bd-r6a.3","type":"blocks","created_at":"2025-12-17T22:44:03.632404-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-r6a.5","depends_on_id":"bd-r6a.4","type":"blocks","created_at":"2025-12-17T22:44:03.788517-08:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-rdzk","title":"Merge: bd-rgyd","description":"branch: polecat/Splitter\ntarget: main\nsource_issue: bd-rgyd\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-23T13:41:15.051877-08:00","updated_at":"2025-12-23T19:12:08.351145-08:00","closed_at":"2025-12-23T19:12:08.351145-08:00","close_reason":"Stale merge-requests from orphaned polecat branches - refinery not processing"} {"id":"bd-rece","title":"Phase 1.1: TOON Library Integration - Add gotoon dependency","description":"Add gotoon (github.com/alpkeskin/gotoon) to go.mod and create internal/toon wrapper package for TOON encoding/decoding. This enables bdtoon to encode Issue structs to TOON format and decode TOON back to issues.\n\n## Subtasks\n1. Add gotoon dependency: go get github.com/alpkeskin/gotoon\n2. Create internal/toon package with wrapper functions\n3. Write encode tests for Issue struct round-trip conversion\n4. Write decode tests for TOON to Issue conversion\n5. Add gotoon API options to wrapper (indent, delimiter, length markers)\n\n## Success Criteria\n- go.mod includes gotoon dependency\n- internal/toon/encode.go exports EncodeTOON(issues) ([]byte, error)\n- internal/toon/decode.go exports DecodeTOON(data []byte) ([]Issue, error)\n- Round-trip tests verify Issue ā†’ TOON ā†’ Issue produces identical data\n- Tests pass with: go test ./internal/toon -v","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T11:48:30.018161133-07:00","updated_at":"2025-12-19T12:53:56.808833405-07:00","closed_at":"2025-12-19T12:53:56.808833405-07:00"} {"id":"bd-rgd7","title":"Update CHANGELOG.md with release notes","description":"Add release notes for 0.32.1: MCP output control params (#667), pin field fix","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:16.031879-08:00","updated_at":"2025-12-20T21:54:07.982164-08:00","closed_at":"2025-12-20T21:54:07.982164-08:00","close_reason":"Added 0.32.1 release notes","dependencies":[{"issue_id":"bd-rgd7","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:16.034926-08:00","created_by":"daemon"}]} @@ -464,10 +464,10 @@ {"id":"bd-t4sb","title":"Work on beads-d8h: Fix prefix mismatch false positive wit...","description":"Work on beads-d8h: Fix prefix mismatch false positive with multi-hyphen prefixes like 'asianops-audit-' (GH#422). When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:19.545069-08:00","updated_at":"2025-12-19T23:28:32.429127-08:00","closed_at":"2025-12-19T23:21:45.471711-08:00","close_reason":"Fixed multi-hyphen prefix false positive in ValidateIDFormat (GH#422)"} {"id":"bd-t4u1","title":"False positive detection by Kaspersky Antivirus (Trojan)","description":"Kaspersky Antivirus falsely detects beads (bd.exe v0.23.1) as a Trojan (PDM:Trojan.Win32.Generic) and removes it.\nEvent: Malicious object detected\nComponent: System Watcher\nObject name: bd.exe\n","status":"closed","priority":1,"issue_type":"task","assignee":"beads/capable","created_at":"2025-11-20T18:56:12.498187-05:00","updated_at":"2025-12-23T23:47:23.182018-08:00","closed_at":"2025-12-23T23:47:23.182018-08:00","close_reason":"Documentation already comprehensive in docs/ANTIVIRUS.md and docs/TROUBLESHOOTING.md. Added TROUBLESHOOTING.md link to README for discoverability. Created follow-up issue bd-14v0 to track Windows code signing implementation as a long-term solution."} {"id":"bd-tbz3","title":"bd init UX Improvements","description":"bd init leaves users with incomplete setup, requiring manual bd doctor --fix. Issues found: (1) git hooks not installed if user declines prompt, (2) no auto-migration when CLI is upgraded, (3) stale merge driver configs from old versions. Fix by making bd init more robust with better defaults and auto-migration.","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-11-21T23:16:00.333543-08:00","updated_at":"2025-12-23T04:20:51.88847-08:00","closed_at":"2025-12-23T04:20:51.88847-08:00","close_reason":"Already implemented in commits ec4117d0 and 3a36d0b9 - hooks/merge driver install by default, doctor runs at end of init"} -{"id":"bd-tggf","title":"Code Health Review Dec 2025: Technical Debt Cleanup","description":"Epic grouping technical debt identified in the Dec 16, 2025 code health review.\n\n## Overall Health Grade: B (Solid foundation, needs cleanup)\n\n### P1 (High Priority):\n- bd-74w1: Consolidate duplicate path-finding utilities\n- bd-b6xo: Remove/fix ClearDirtyIssues() race condition\n- bd-b3og: Fix TestImportBugIntegration deadlock\n\n### P2 (Medium Priority):\n- bd-05a8: Split large files (doctor.go, sync.go)\n- bd-qioh: Standardize error handling patterns\n- bd-rgyd: Split queries.go (1586 lines)\n- bd-9g1z: Fix/remove TestFindJSONLPathDefault\n\n### P3 (Low Priority):\n- bd-ork0: Add comments to 30+ ignored errors\n- bd-4nqq: Remove dead test code in info_test.go\n- bd-dhza: Reduce global state in main.go\n\n## Key Areas:\n1. Code duplication in path utilities\n2. Large monolithic files (5 files \u003e1000 lines)\n3. Global state (25+ variables, 3 deprecated)\n4. Silent error suppression (30+ instances)\n5. Test gaps and dead test code\n6. Atomicity risks in batch operations","status":"open","priority":2,"issue_type":"epic","created_at":"2025-12-16T18:18:58.115507-08:00","updated_at":"2025-12-16T18:21:50.561709-08:00","dependencies":[{"issue_id":"bd-tggf","depends_on_id":"bd-74w1","type":"blocks","created_at":"2025-12-22T21:00:21.429274-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-05a8","type":"blocks","created_at":"2025-12-22T21:00:21.501589-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-9g1z","type":"blocks","created_at":"2025-12-22T21:00:21.571116-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-qioh","type":"blocks","created_at":"2025-12-22T21:00:21.640589-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-rgyd","type":"blocks","created_at":"2025-12-22T21:00:21.710912-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-4nqq","type":"blocks","created_at":"2025-12-22T21:00:21.781914-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-dhza","type":"blocks","created_at":"2025-12-22T21:00:21.852-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-ork0","type":"blocks","created_at":"2025-12-22T21:00:21.930168-08:00","created_by":"daemon"}]} +{"id":"bd-tggf","title":"Code Health Review Dec 2025: Technical Debt Cleanup","description":"Epic grouping technical debt identified in the Dec 16, 2025 code health review.\n\n## Overall Health Grade: B (Solid foundation, needs cleanup)\n\n### P1 (High Priority):\n- bd-74w1: Consolidate duplicate path-finding utilities\n- [deleted:bd-b6xo]: Remove/fix ClearDirtyIssues() race condition\n- [deleted:bd-b3og]: Fix TestImportBugIntegration deadlock\n\n### P2 (Medium Priority):\n- bd-05a8: Split large files (doctor.go, sync.go)\n- bd-qioh: Standardize error handling patterns\n- bd-rgyd: Split queries.go (1586 lines)\n- bd-9g1z: Fix/remove TestFindJSONLPathDefault\n\n### P3 (Low Priority):\n- bd-ork0: Add comments to 30+ ignored errors\n- bd-4nqq: Remove dead test code in info_test.go\n- bd-dhza: Reduce global state in main.go\n\n## Key Areas:\n1. Code duplication in path utilities\n2. Large monolithic files (5 files \u003e1000 lines)\n3. Global state (25+ variables, 3 deprecated)\n4. Silent error suppression (30+ instances)\n5. Test gaps and dead test code\n6. Atomicity risks in batch operations","status":"open","priority":2,"issue_type":"epic","created_at":"2025-12-16T18:18:58.115507-08:00","updated_at":"2025-12-25T01:21:01.961139-08:00","dependencies":[{"issue_id":"bd-tggf","depends_on_id":"bd-74w1","type":"blocks","created_at":"2025-12-22T21:00:21.429274-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-05a8","type":"blocks","created_at":"2025-12-22T21:00:21.501589-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-9g1z","type":"blocks","created_at":"2025-12-22T21:00:21.571116-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-qioh","type":"blocks","created_at":"2025-12-22T21:00:21.640589-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-rgyd","type":"blocks","created_at":"2025-12-22T21:00:21.710912-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-4nqq","type":"blocks","created_at":"2025-12-22T21:00:21.781914-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-dhza","type":"blocks","created_at":"2025-12-22T21:00:21.852-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-ork0","type":"blocks","created_at":"2025-12-22T21:00:21.930168-08:00","created_by":"daemon"}]} {"id":"bd-thgk","title":"Improve test coverage for internal/compact (18.2% ā†’ 70%)","description":"Improve test coverage for internal/compact package from 17% to 70%.\n\n## Current State\n- Coverage: 17.3%\n- Files: compactor.go, git.go, haiku.go\n- Tests: compactor_test.go (minimal tests)\n\n## Functions Needing Tests\n\n### compactor.go (core compaction)\n- [ ] New - needs config validation tests\n- [ ] CompactTier1 - needs single issue compaction tests\n- [ ] CompactTier1Batch - needs batch processing tests\n- [ ] compactSingleWithResult - internal, test via public API\n\n### git.go\n- [ ] GetCurrentCommitHash - needs git repo fixture tests\n\n### haiku.go (AI summarization) - MOCK REQUIRED\n- [ ] NewHaikuClient - needs API key validation tests\n- [ ] SummarizeTier1 - needs mock API response tests\n- [ ] callWithRetry - needs retry logic tests\n- [ ] isRetryable - needs error classification tests\n- [ ] renderTier1Prompt - needs template rendering tests\n\n## Implementation Guide\n\n1. **Mock the Anthropic API:**\n ```go\n // Create mock HTTP server\n server := httptest.NewServer(http.HandlerFunc(func(w http.ResponseWriter, r *http.Request) {\n json.NewEncoder(w).Encode(map[string]interface{}{\n \"content\": []map[string]string{{\"text\": \"Summarized content\"}},\n })\n }))\n defer server.Close()\n \n // Point client at mock\n client.baseURL = server.URL\n ```\n\n2. **Test scenarios:**\n - Successful compaction with AI summary\n - API failure with retry\n - Rate limit handling\n - Empty issue handling\n - Large issue truncation\n\n3. **Use test database:**\n ```go\n store, cleanup := testutil.NewTestStore(t)\n defer cleanup()\n ```\n\n## Success Criteria\n- Coverage ā‰„ 70%\n- AI calls properly mocked (no real API calls in tests)\n- Retry logic verified\n- Error paths covered\n\n## Run Tests\n```bash\ngo test -v -cover ./internal/compact\ngo test -race ./internal/compact\n```","status":"closed","priority":1,"issue_type":"task","assignee":"beads/Compactor","created_at":"2025-12-13T20:42:58.455767-08:00","updated_at":"2025-12-23T13:41:10.80832-08:00","closed_at":"2025-12-23T13:41:10.80832-08:00","close_reason":"Coverage improved from 17.3% to 81.8%, exceeding 70% target","dependencies":[{"issue_id":"bd-thgk","depends_on_id":"bd-iz5t","type":"parent-child","created_at":"2025-12-23T12:44:07.287377-08:00","created_by":"daemon"}]} {"id":"bd-tj00","title":"Update local installation","description":"go build -o ~/.local/bin/bd ./cmd/bd \u0026\u0026 codesign -s - ~/.local/bin/bd","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:20.616907-08:00","updated_at":"2025-12-20T21:55:42.756171-08:00","closed_at":"2025-12-20T21:55:42.756171-08:00","close_reason":"Installed bd 0.32.1","dependencies":[{"issue_id":"bd-tj00","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:20.619834-08:00","created_by":"daemon"},{"issue_id":"bd-tj00","depends_on_id":"bd-9l0h","type":"blocks","created_at":"2025-12-20T21:53:29.817989-08:00","created_by":"daemon"}]} -{"id":"bd-tm2p","title":"Polecats get stuck on interactive shell prompts (cp/mv/rm -i)","description":"During swarm operations, polecats frequently get stuck waiting for interactive prompts from shell commands like:\n- cp prompting 'overwrite file? (y/n)'\n- mv prompting 'overwrite file? (y/n)' \n- rm prompting 'remove file?'\n\nThis happens because macOS aliases or shell configs may have -i flags set by default.\n\nRoot cause: Claude Code runs commands that trigger interactive confirmation prompts, but cannot respond to them, causing the agent to hang indefinitely.\n\nObserved in: Multiple polecats during GH issues swarm (Dec 2024)\n- Derrick, Roustabout, Prospector, Warboy all got stuck on y/n prompts\n\nSuggested fixes:\n1. AGENTS.md should instruct agents to always use -f flag with cp/mv/rm\n2. Polecat startup could set shell aliases to use non-interactive versions\n3. bd prime hook could include guidance about non-interactive commands\n4. Consider detecting stuck prompts and auto-recovering","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-14T16:51:24.572271-08:00","updated_at":"2025-12-17T23:13:40.536312-08:00","closed_at":"2025-12-17T19:13:04.074424-08:00"} +{"id":"bd-tm2p","title":"Polecats get stuck on interactive shell prompts (cp/mv/rm -i)","description":"During swarm operations, polecats frequently get stuck waiting for interactive prompts from shell commands like:\n- cp prompting 'overwrite file? (y/n)'\n- mv prompting 'overwrite file? (y/n)' \n- rm prompting 'remove file?'\n\nThis happens because macOS aliases or shell configs may have -i flags set by default.\n\nRoot cause: Claude Code runs commands that trigger interactive confirmation prompts, but cannot respond to them, causing the agent to hang indefinitely.\n\nObserved in: Multiple polecats during GH issues swarm (Dec 2024)\n- Derrick, Roustabout, Prospector, Warboy all got stuck on y/n prompts\n\nSuggested fixes:\n1. AGENTS.md should instruct agents to always use -f flag with cp/mv/rm\n2. Polecat startup could set shell aliases to use non-interactive versions\n3. bd prime hook could include guidance about non-interactive commands\n4. Consider detecting stuck prompts and auto-recovering","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-14T16:51:24.572271-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-toy3","title":"Test hook","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T18:33:39.717036-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-ttbf","title":"bd mol reset: Reset molecule to initial state for looping","description":"Implement bd mol reset for patrol loop behavior.\n\n## Command\n\n```bash\nbd mol reset \u003cmol-id\u003e\n```\n\n## Behavior\n\n1. Load molecule state from .beads/molecules/\u003cmol-id\u003e.state.yaml\n2. Reset all step states to pending\n3. Clear current_step (or set to first step)\n4. Preserve: bonded_at, bonded_by, variables\n5. Update: reset_count++, last_reset_at\n\n## Use Case: Deacon Patrol Loop\n\n```\ninbox-check ā†’ spawn-work ā†’ self-inspect ā†’ mol-reset ā†’ (loop)\n```\n\nThe Deacon runs its patrol, then resets the molecule to start fresh.\nNo gt handoff needed unless context is high.\n\n## State After Reset\n\n```yaml\nid: mol-deacon-patrol\nstatus: running\ncurrent_step: inbox-check # Back to first\nreset_count: 5\nlast_reset_at: 2025-12-24T...\nsteps:\n inbox-check: pending # All reset\n spawn-work: pending\n self-inspect: pending\n```\n\n## Files\n\n- cmd/bd/mol_reset.go\n- internal/mol/state.go (add Reset method)","status":"closed","priority":0,"issue_type":"task","created_at":"2025-12-24T15:53:20.154106-08:00","updated_at":"2025-12-24T16:53:14.837362-08:00","closed_at":"2025-12-24T16:53:14.837362-08:00","close_reason":"REJECTED: Blocked by bd-hulf which was rejected. The concept of 'reset' is valid but must work by reopening child beads - no external state file.","dependencies":[{"issue_id":"bd-ttbf","depends_on_id":"bd-hulf","type":"blocks","created_at":"2025-12-24T15:53:49.159903-08:00","created_by":"daemon"}]} {"id":"bd-tvu3","title":"Improve test coverage for internal/beads (48.1% ā†’ 70%)","description":"Improve test coverage for internal/beads package from 48% to 70%.\n\n## Current State\n- Coverage: 48.4%\n- Files: beads.go, fingerprint.go\n- Tests: beads_test.go (moderate coverage)\n\n## Functions Needing Tests\n\n### beads.go (database discovery)\n- [ ] followRedirect - needs redirect file tests\n- [ ] findDatabaseInBeadsDir - needs various dir structures\n- [x] NewSQLiteStorage - likely covered\n- [ ] FindDatabasePath - needs BEADS_DB env var tests\n- [ ] hasBeadsProjectFiles - needs file existence tests\n- [ ] FindBeadsDir - needs directory traversal tests\n- [ ] FindJSONLPath - needs path derivation tests\n- [ ] findGitRoot - needs git repo tests\n- [ ] findDatabaseInTree - needs nested directory tests\n- [ ] FindAllDatabases - needs multi-database tests\n- [ ] FindWispDir - needs wisp directory tests\n- [ ] FindWispDatabasePath - needs wisp path tests\n- [ ] NewWispStorage - needs wisp storage tests\n- [ ] EnsureWispGitignore - needs gitignore creation tests\n- [ ] IsWispDatabase - needs path classification tests\n\n### fingerprint.go (repo identification)\n- [ ] ComputeRepoID - needs various remote URL tests\n- [ ] canonicalizeGitURL - needs URL normalization tests\n- [ ] GetCloneID - needs clone identification tests\n\n## Implementation Guide\n\n1. **Use temp directories:**\n ```go\n func TestFindBeadsDir(t *testing.T) {\n tmpDir := t.TempDir()\n beadsDir := filepath.Join(tmpDir, \".beads\")\n os.MkdirAll(beadsDir, 0755)\n \n // Create test files\n os.WriteFile(filepath.Join(beadsDir, \"beads.db\"), []byte{}, 0644)\n \n // Change to tmpDir and test\n oldWd, _ := os.Getwd()\n os.Chdir(tmpDir)\n defer os.Chdir(oldWd)\n \n result := FindBeadsDir()\n assert.Equal(t, beadsDir, result)\n }\n ```\n\n2. **Test scenarios:**\n - BEADS_DB environment variable set\n - .beads/ in current directory\n - .beads/ in parent directory\n - Redirect file pointing elsewhere\n - No beads directory found\n - Wisp directory alongside main beads\n\n3. **Git remote URL tests:**\n ```go\n tests := []struct{\n input string\n expected string\n }{\n {\"git@github.com:user/repo.git\", \"github.com/user/repo\"},\n {\"https://github.com/user/repo\", \"github.com/user/repo\"},\n {\"ssh://git@github.com/user/repo.git\", \"github.com/user/repo\"},\n }\n ```\n\n## Success Criteria\n- Coverage ā‰„ 70%\n- All FindXxx functions have tests\n- Environment variable handling tested\n- Edge cases (missing dirs, redirects) covered\n\n## Run Tests\n```bash\ngo test -v -cover ./internal/beads\ngo test -race ./internal/beads\n```","status":"closed","priority":1,"issue_type":"task","assignee":"beads/Beader","created_at":"2025-12-13T20:42:59.739142-08:00","updated_at":"2025-12-23T13:36:17.885237-08:00","closed_at":"2025-12-23T13:36:17.885237-08:00","close_reason":"Coverage improved from 48.4% to 80.2%, exceeding 70% target","dependencies":[{"issue_id":"bd-tvu3","depends_on_id":"bd-iz5t","type":"parent-child","created_at":"2025-12-23T12:44:07.362967-08:00","created_by":"daemon"}]} @@ -493,11 +493,11 @@ {"id":"bd-vgi5","title":"Push version bump to GitHub","description":"git push origin main - triggers CI but no release yet.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:05.363604-08:00","updated_at":"2025-12-24T16:25:30.019895-08:00","dependencies":[{"issue_id":"bd-vgi5","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.87736-08:00","created_by":"daemon"},{"issue_id":"bd-vgi5","depends_on_id":"bd-3ggb","type":"blocks","created_at":"2025-12-18T22:43:21.078208-08:00","created_by":"daemon"}],"deleted_at":"2025-12-24T16:25:30.019895-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} {"id":"bd-vks2","title":"bd dep tree doesn't display external dependencies","description":"GetDependencyTree (dependencies.go:464-624) uses a recursive CTE that JOINs with the issues table, which means external refs (external:project:capability) are invisible in the tree output.\n\nWhen an issue has an external blocking dependency, running 'bd dep tree \u003cid\u003e' won't show it.\n\nOptions:\n1. Query dependencies table separately for external refs and display them as leaf nodes\n2. Add a synthetic 'external' node type that shows the ref and resolution status\n3. Document that external deps aren't shown in tree view (use bd show for full deps)\n\nLower priority since bd show \u003cid\u003e displays all dependencies including external refs.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-21T23:45:27.121934-08:00","updated_at":"2025-12-22T22:30:19.083652-08:00","closed_at":"2025-12-22T22:30:19.083652-08:00","close_reason":"Implemented: GetDependencyTree now fetches external deps and adds them as synthetic leaf nodes with resolution status. Added test TestGetDependencyTreeExternalDeps. Updated formatTreeNode to display external deps specially.","dependencies":[{"issue_id":"bd-vks2","depends_on_id":"bd-zmmy","type":"discovered-from","created_at":"2025-12-21T23:45:27.122511-08:00","created_by":"daemon"}]} {"id":"bd-vpan","title":"Re: Thread Test 2","description":"Got your message. Testing reply feature.","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:29.144352-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-vpan","depends_on_id":"bd-x36g","type":"replies-to","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} -{"id":"bd-vs9","title":"Fix unparam unused parameter in cmd/bd/doctor.go:541","description":"Linting issue: checkHooksQuick - path is unused (unparam) at cmd/bd/doctor.go:541:22. Error: func checkHooksQuick(path string) string {","status":"closed","priority":0,"issue_type":"bug","created_at":"2025-12-07T15:35:17.02177046-07:00","updated_at":"2025-12-17T23:13:40.535743-08:00","closed_at":"2025-12-17T16:46:11.028332-08:00"} +{"id":"bd-vs9","title":"Fix unparam unused parameter in cmd/bd/doctor.go:541","description":"Linting issue: checkHooksQuick - path is unused (unparam) at cmd/bd/doctor.go:541:22. Error: func checkHooksQuick(path string) string {","status":"tombstone","priority":0,"issue_type":"bug","created_at":"2025-12-07T15:35:17.02177046-07:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-w193","title":"Work on beads-399: Add omitempty to JSONL fields for smal...","description":"Work on beads-399: Add omitempty to JSONL fields for smaller notifications. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:37.440894-08:00","updated_at":"2025-12-19T23:28:32.42751-08:00","closed_at":"2025-12-19T23:23:09.542288-08:00","close_reason":"Added omitempty to Description and Dependency.CreatedBy fields in types.go"} {"id":"bd-w8g0","title":"test pin issue","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-20T22:44:27.963361-08:00","updated_at":"2025-12-20T22:44:57.977229-08:00","deleted_at":"2025-12-20T22:44:57.977229-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} {"id":"bd-wa2l","title":"bd cook: Compile formula to proto","description":"Implement the 'bd cook' command that transforms formulas into protos:\n\nUsage: bd cook \u003cformula-file\u003e [options]\n bd cook .beads/formulas/*.formula.yaml\n\nProcess:\n1. Parse formula YAML (uses formula parser)\n2. Resolve extends (formula inheritance)\n3. Expand macros (expansion rules)\n4. Apply aspects (cross-cutting concerns)\n5. Generate flat proto bead\n\nOutput:\n- Creates proto bead in .beads/ with mol-prefix\n- Proto has all steps pre-expanded\n- Proto is ready for pour/wisp instantiation\n\nExample:\n bd cook .beads/formulas/mol-deacon-patrol.formula.yaml\n ā†’ Creates mol-deacon-patrol proto bead\n\nGas Town tracking: gt-8tmz.13","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-24T13:19:53.66483-08:00","updated_at":"2025-12-24T13:44:20.020124-08:00","closed_at":"2025-12-24T13:44:20.020124-08:00","close_reason":"Implemented by Dave","dependencies":[{"issue_id":"bd-wa2l","depends_on_id":"bd-weu8","type":"blocks","created_at":"2025-12-24T13:20:00.070003-08:00","created_by":"daemon"}]} -{"id":"bd-wc2","title":"Test body-file","description":"This is a test description from a file.\n\nIt has multiple lines.\n","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T17:27:20.508724-08:00","updated_at":"2025-12-17T17:28:33.83142-08:00","closed_at":"2025-12-17T17:28:33.83142-08:00"} +{"id":"bd-wc2","title":"Test body-file","description":"This is a test description from a file.\n\nIt has multiple lines.\n","status":"tombstone","priority":4,"issue_type":"task","created_at":"2025-12-17T17:27:20.508724-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-weu8","title":"Formula parser: YAML schema for .formula.yaml files","description":"Implement formula parsing from YAML:\n- Define YAML schema for .formula.yaml files\n- Parse steps, compose rules, vars\n- Support extends for formula inheritance\n- Validate formula structure\n\nSchema should support:\n- formula: name\n- description: text\n- version: number\n- type: workflow|expansion|aspect\n- vars: variable definitions\n- steps: step definitions\n- compose: composition rules\n\nGas Town tracking: gt-8tmz.12","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-24T13:19:41.30319-08:00","updated_at":"2025-12-24T13:44:20.018577-08:00","closed_at":"2025-12-24T13:44:20.018577-08:00","close_reason":"Implemented by Dave"} {"id":"bd-whgv","title":"Merge: bd-401h","description":"branch: polecat/rictus\ntarget: main\nsource_issue: bd-401h\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:20:37.854953-08:00","updated_at":"2025-12-20T23:17:26.999477-08:00","closed_at":"2025-12-20T23:17:26.999477-08:00","close_reason":"Branches nuked, MRs obsolete"} {"id":"bd-wp5j","title":"Merge: bd-indn","description":"branch: polecat/rictus\ntarget: main\nsource_issue: bd-indn\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-23T20:45:51.286598-08:00","updated_at":"2025-12-23T21:21:57.697826-08:00","closed_at":"2025-12-23T21:21:57.697826-08:00","close_reason":"stale - no code pushed"}