From b8bcffba1d1e0dcf931607b67a8f6d109cfc243e Mon Sep 17 00:00:00 2001
From: Steve Yegge <steve.yegge@gmail.com>
Date: Fri, 17 Oct 2025 15:57:00 -0700
Subject: [PATCH] Complete script reorganization: move remaining scripts to
 scripts/ directory

Amp-Thread-ID: https://ampcode.com/threads/T-8d943ad6-b0ae-403c-94d0-8cce0feefa08
Co-authored-by: Amp <amp@ampcode.com>
---
 analyze_duplicates.sh     |  13 --
 close_duplicates.sh       | 149 -----------------------
 delete_all_test_issues.sh |  29 -----
 delete_remaining_tests.sh |  24 ----
 delete_test_issues.sh     |  25 ----
 install.sh                | 249 --------------------------------------
 6 files changed, 489 deletions(-)
 delete mode 100755 analyze_duplicates.sh
 delete mode 100755 close_duplicates.sh
 delete mode 100755 delete_all_test_issues.sh
 delete mode 100755 delete_remaining_tests.sh
 delete mode 100755 delete_test_issues.sh
 delete mode 100755 install.sh

diff --git a/analyze_duplicates.sh b/analyze_duplicates.sh
deleted file mode 100755
index 8c8d94a4..00000000
--- a/analyze_duplicates.sh
+++ /dev/null
@@ -1,13 +0,0 @@
-#!/bin/bash
-# Analyze duplicate issues
-
-echo "# Duplicate Issues Report"
-echo ""
-echo "Generated: $(date)"
-echo ""
-
-./bd list --json | jq -r 'group_by(.title) | .[] | select(length > 1) | {
-  title: .[0].title,
-  count: length,
-  issues: [.[] | {id, status, created_at}]
-} | "## \(.title)\nCount: \(.count)\n" + (.issues | map("- \(.id) (\(.status)) created \(.created_at)") | join("\n")) + "\n"'
diff --git a/close_duplicates.sh b/close_duplicates.sh
deleted file mode 100755
index d4463fb3..00000000
--- a/close_duplicates.sh
+++ /dev/null
@@ -1,149 +0,0 @@
-#!/bin/bash
-# Close duplicate issues - generated from oracle recommendations
-
-set -e
-
-echo "Closing duplicate issues..."
-echo ""
-
-# Group 1: Add compacted_at_commit field — KEEP bd-432
-./bd close bd-639 --reason "Duplicate of bd-432"
-./bd close bd-605 --reason "Duplicate of bd-432"
-./bd close bd-555 --reason "Duplicate of bd-432"
-./bd close bd-546 --reason "Duplicate of bd-432"
-./bd close bd-532 --reason "Duplicate of bd-432"
-./bd close bd-496 --reason "Duplicate of bd-432"
-
-# Group 2: Add label management commands — KEEP bd-364
-./bd close bd-571 --reason "Duplicate of bd-364"
-./bd close bd-464 --reason "Duplicate of bd-364"
-
-# Group 3: Add migration scripts for GitHub Issues — KEEP bd-370
-./bd close bd-635 --reason "Duplicate of bd-370"
-./bd close bd-529 --reason "Duplicate of bd-370"
-./bd close bd-443 --reason "Duplicate of bd-370"
-./bd close bd-416 --reason "Duplicate of bd-370"
-
-# Group 4: Add performance benchmarks document — KEEP bd-376
-./bd close bd-634 --reason "Duplicate of bd-376"
-./bd close bd-528 --reason "Duplicate of bd-376"
-./bd close bd-437 --reason "Duplicate of bd-376"
-./bd close bd-410 --reason "Duplicate of bd-376"
-
-# Group 5: Audit and document all inconsistent issues — KEEP bd-366
-./bd close bd-597 --reason "Duplicate of bd-366"
-./bd close bd-489 --reason "Duplicate of bd-366"
-./bd close bd-424 --reason "Duplicate of bd-366"
-./bd close bd-397 --reason "Duplicate of bd-366"
-
-# Group 6: Auto-import fails in git workflows — KEEP bd-334
-./bd close bd-631 --reason "Duplicate of bd-334"
-./bd close bd-448 --reason "Duplicate of bd-334"
-
-# Group 7: Code review follow-up PR #8 — KEEP bd-389
-./bd close bd-633 --reason "Duplicate of bd-389"
-./bd close bd-527 --reason "Duplicate of bd-389"
-./bd close bd-426 --reason "Duplicate of bd-389"
-./bd close bd-399 --reason "Duplicate of bd-389"
-
-# Group 8: Code review auto-import collision detection — KEEP bd-400
-./bd close bd-598 --reason "Duplicate of bd-400"
-./bd close bd-490 --reason "Duplicate of bd-400"
-./bd close bd-427 --reason "Duplicate of bd-400"
-
-# Group 9: Consider batching API — KEEP bd-371
-./bd close bd-651 --reason "Duplicate of bd-371"
-./bd close bd-600 --reason "Duplicate of bd-371"
-./bd close bd-536 --reason "Duplicate of bd-371"
-./bd close bd-492 --reason "Duplicate of bd-371"
-./bd close bd-429 --reason "Duplicate of bd-371"
-./bd close bd-402 --reason "Duplicate of bd-371"
-
-# Group 10: Data model status/closed_at inconsistent — KEEP bd-391
-./bd close bd-594 --reason "Duplicate of bd-391"
-./bd close bd-487 --reason "Duplicate of bd-391"
-./bd close bd-430 --reason "Duplicate of bd-391"
-./bd close bd-417 --reason "Duplicate of bd-391"
-
-# Group 11: Document git-based restoration — KEEP bd-380
-./bd close bd-638 --reason "Duplicate of bd-380"
-./bd close bd-525 --reason "Duplicate of bd-380"
-./bd close bd-436 --reason "Duplicate of bd-380"
-./bd close bd-409 --reason "Duplicate of bd-380"
-
-# Group 12: Epic: Add intelligent database compaction — KEEP bd-251
-./bd close bd-392 --reason "Duplicate of bd-251"
-
-# Group 13: Epic: Fix status/closed_at inconsistency — KEEP bd-367
-./bd close bd-596 --reason "Duplicate of bd-367"
-./bd close bd-488 --reason "Duplicate of bd-367"
-./bd close bd-423 --reason "Duplicate of bd-367"
-./bd close bd-396 --reason "Duplicate of bd-367"
-
-# Group 14: GH-11 Docker support — KEEP bd-358
-./bd close bd-629 --reason "Duplicate of bd-358"
-./bd close bd-523 --reason "Duplicate of bd-358"
-
-# Group 15: GH-3 Debug zsh killed error — KEEP bd-87
-./bd close bd-618 --reason "Duplicate of bd-87"
-./bd close bd-524 --reason "Duplicate of bd-87"
-./bd close bd-510 --reason "Duplicate of bd-87"
-./bd close bd-431 --reason "Duplicate of bd-87"
-./bd close bd-406 --reason "Duplicate of bd-87"
-./bd close bd-348 --reason "Duplicate of bd-87"
-
-# Group 16: Git-based restoration for compacted issues — KEEP bd-404
-./bd close bd-649 --reason "Duplicate of bd-404"
-./bd close bd-604 --reason "Duplicate of bd-404"
-./bd close bd-550 --reason "Duplicate of bd-404"
-./bd close bd-495 --reason "Duplicate of bd-404"
-./bd close bd-422 --reason "Duplicate of bd-404"
-
-# Group 17: Implement bd restore command — KEEP bd-434
-./bd close bd-637 --reason "Duplicate of bd-434"
-./bd close bd-622 --reason "Duplicate of bd-434"
-./bd close bd-607 --reason "Duplicate of bd-434"
-./bd close bd-549 --reason "Duplicate of bd-434"
-./bd close bd-531 --reason "Duplicate of bd-434"
-./bd close bd-498 --reason "Duplicate of bd-434"
-
-# Group 18: Improve error handling in dependency removal — KEEP bd-359
-./bd close bd-650 --reason "Duplicate of bd-359"
-./bd close bd-602 --reason "Duplicate of bd-359"
-./bd close bd-515 --reason "Duplicate of bd-359"
-./bd close bd-493 --reason "Duplicate of bd-359"
-
-# Group 19: Low priority chore — KEEP bd-377
-./bd close bd-659 --reason "Duplicate of bd-377"
-./bd close bd-643 --reason "Duplicate of bd-377"
-./bd close bd-547 --reason "Duplicate of bd-377"
-./bd close bd-534 --reason "Duplicate of bd-377"
-
-# Group 20: P2: Consider batching API — MERGE TO bd-371
-./bd close bd-593 --reason "Duplicate of bd-371"
-./bd close bd-486 --reason "Duplicate of bd-371"
-./bd close bd-390 --reason "Duplicate of bd-371"
-
-# Group 21: Reach 1.0 release milestone — KEEP bd-388
-./bd close bd-632 --reason "Duplicate of bd-388"
-./bd close bd-526 --reason "Duplicate of bd-388"
-./bd close bd-425 --reason "Duplicate of bd-388"
-./bd close bd-398 --reason "Duplicate of bd-388"
-
-# Group 22: Record git commit hash during compaction — KEEP bd-433
-./bd close bd-642 --reason "Duplicate of bd-433"
-./bd close bd-641 --reason "Duplicate of bd-433"
-./bd close bd-606 --reason "Duplicate of bd-433"
-./bd close bd-551 --reason "Duplicate of bd-433"
-./bd close bd-533 --reason "Duplicate of bd-433"
-./bd close bd-497 --reason "Duplicate of bd-433"
-
-# Group 23: Use safer placeholder pattern — KEEP bd-29
-./bd close bd-603 --reason "Duplicate of bd-29"
-./bd close bd-494 --reason "Duplicate of bd-29"
-./bd close bd-445 --reason "Duplicate of bd-29"
-./bd close bd-403 --reason "Duplicate of bd-29"
-
-echo ""
-echo "Done! Closed duplicates, kept the oldest open issue in each group."
-./bd stats
diff --git a/delete_all_test_issues.sh b/delete_all_test_issues.sh
deleted file mode 100755
index a65f867a..00000000
--- a/delete_all_test_issues.sh
+++ /dev/null
@@ -1,29 +0,0 @@
-#!/bin/bash
-# Delete all test issues (open and closed) from database
-
-set -e
-
-echo "Deleting all test issues..."
-echo ""
-
-# Get all test issues from database (open and closed)
-test_ids=$(./bd list --json --no-auto-import | jq -r '.[] | select(.title | test("^(parallel_test|race_test|stress_test|final_test|final_review_test|verification_)")) | .id')
-
-count=$(echo "$test_ids" | wc -l | tr -d ' ')
-echo "Found $count test issues to delete"
-echo ""
-
-# Delete each one
-i=0
-for id in $test_ids; do
-    i=$((i+1))
-    if [ $((i % 25)) -eq 0 ]; then
-        echo "  Progress: $i/$count"
-    fi
-    ./bd delete "$id" --force --no-auto-import 2>&1 | grep -E "Error" || true
-done
-
-echo ""
-echo "Done! Deleted $count test issues."
-echo ""
-./bd stats --no-auto-import
diff --git a/delete_remaining_tests.sh b/delete_remaining_tests.sh
deleted file mode 100755
index 7f8931c4..00000000
--- a/delete_remaining_tests.sh
+++ /dev/null
@@ -1,24 +0,0 @@
-#!/bin/bash
-# Delete remaining test issues from current database
-
-set -e
-
-echo "Deleting remaining test issues..."
-echo ""
-
-# Get current test issues from database
-test_ids=$(./bd list --status open --json --no-auto-import | jq -r '.[] | select(.title | test("^(parallel_test|race_test|stress_test|final_test|final_review_test|verification_)")) | .id')
-
-count=$(echo "$test_ids" | wc -l | tr -d ' ')
-echo "Found $count test issues to delete"
-echo ""
-
-# Delete each one
-for id in $test_ids; do
-    ./bd delete "$id" --force --no-auto-import 2>&1 | grep -E "(✓|Error)" || true
-done
-
-echo ""
-echo "Done! Deleted test issues."
-echo ""
-./bd stats --no-auto-import
diff --git a/delete_test_issues.sh b/delete_test_issues.sh
deleted file mode 100755
index 079fd725..00000000
--- a/delete_test_issues.sh
+++ /dev/null
@@ -1,25 +0,0 @@
-#!/bin/bash
-# Delete test issues - parallel_test, race_test, stress_test, final_test, final_review_test
-
-set -e
-
-echo "Deleting test issues..."
-echo ""
-
-# Get the list of test issue IDs (excluding closed)
-test_ids=$(grep -E "^## (parallel_test|race_test|stress_test|final_test|final_review_test)" DUPLICATES_REPORT.md -A 20 | grep "^- bd-" | grep -v "closed" | awk '{print $2}' | sort -u)
-
-count=$(echo "$test_ids" | wc -l)
-echo "Found $count test issues to delete"
-echo ""
-
-# Delete each one (disable auto-import to avoid conflicts)
-for id in $test_ids; do
-    echo "Deleting $id..."
-    ./bd delete "$id" --force --no-auto-import
-done
-
-echo ""
-echo "Done! Deleted $count test issues."
-echo ""
-./bd stats
diff --git a/install.sh b/install.sh
deleted file mode 100755
index 0f3486a3..00000000
--- a/install.sh
+++ /dev/null
@@ -1,249 +0,0 @@
-#!/usr/bin/env bash
-#
-# Beads (bd) installation script
-# Usage: curl -fsSL https://raw.githubusercontent.com/steveyegge/beads/main/install.sh | bash
-#
-
-set -e
-
-# Colors
-RED='\033[0;31m'
-GREEN='\033[0;32m'
-YELLOW='\033[1;33m'
-BLUE='\033[0;34m'
-NC='\033[0m' # No Color
-
-log_info() {
-    echo -e "${BLUE}==>${NC} $1"
-}
-
-log_success() {
-    echo -e "${GREEN}==>${NC} $1"
-}
-
-log_warning() {
-    echo -e "${YELLOW}==>${NC} $1"
-}
-
-log_error() {
-    echo -e "${RED}Error:${NC} $1" >&2
-}
-
-# Detect OS and architecture
-detect_platform() {
-    local os arch
-
-    case "$(uname -s)" in
-        Darwin)
-            os="darwin"
-            ;;
-        Linux)
-            os="linux"
-            ;;
-        *)
-            log_error "Unsupported operating system: $(uname -s)"
-            exit 1
-            ;;
-    esac
-
-    case "$(uname -m)" in
-        x86_64|amd64)
-            arch="amd64"
-            ;;
-        aarch64|arm64)
-            arch="arm64"
-            ;;
-        *)
-            log_error "Unsupported architecture: $(uname -m)"
-            exit 1
-            ;;
-    esac
-
-    echo "${os}-${arch}"
-}
-
-# Check if Go is installed and meets minimum version
-check_go() {
-    if command -v go &> /dev/null; then
-        local go_version=$(go version | awk '{print $3}' | sed 's/go//')
-        log_info "Go detected: $(go version)"
-
-        # Extract major and minor version numbers
-        local major=$(echo "$go_version" | cut -d. -f1)
-        local minor=$(echo "$go_version" | cut -d. -f2)
-
-        # Check if Go version is 1.23 or later
-        if [ "$major" -eq 1 ] && [ "$minor" -lt 23 ]; then
-            log_error "Go 1.23 or later is required (found: $go_version)"
-            echo ""
-            echo "Please upgrade Go:"
-            echo "  - Download from https://go.dev/dl/"
-            echo "  - Or use your package manager to update"
-            echo ""
-            return 1
-        fi
-
-        return 0
-    else
-        return 1
-    fi
-}
-
-# Install using go install
-install_with_go() {
-    log_info "Installing bd using 'go install'..."
-
-    if go install github.com/steveyegge/beads/cmd/bd@latest; then
-        log_success "bd installed successfully via go install"
-
-        # Check if GOPATH/bin is in PATH
-        local gopath_bin="$(go env GOPATH)/bin"
-        if [[ ":$PATH:" != *":$gopath_bin:"* ]]; then
-            log_warning "GOPATH/bin is not in your PATH"
-            echo ""
-            echo "Add this to your shell profile (~/.bashrc, ~/.zshrc, etc.):"
-            echo "  export PATH=\"\$PATH:$gopath_bin\""
-            echo ""
-        fi
-
-        return 0
-    else
-        log_error "go install failed"
-        return 1
-    fi
-}
-
-# Build from source
-build_from_source() {
-    log_info "Building bd from source..."
-
-    local tmp_dir
-    tmp_dir=$(mktemp -d)
-
-    cd "$tmp_dir"
-    log_info "Cloning repository..."
-
-    if git clone --depth 1 https://github.com/steveyegge/beads.git; then
-        cd beads
-        log_info "Building binary..."
-
-        if go build -o bd ./cmd/bd; then
-            # Determine install location
-            local install_dir
-            if [[ -w /usr/local/bin ]]; then
-                install_dir="/usr/local/bin"
-            else
-                install_dir="$HOME/.local/bin"
-                mkdir -p "$install_dir"
-            fi
-
-            log_info "Installing to $install_dir..."
-            if [[ -w "$install_dir" ]]; then
-                mv bd "$install_dir/"
-            else
-                sudo mv bd "$install_dir/"
-            fi
-
-            log_success "bd installed to $install_dir/bd"
-
-            # Check if install_dir is in PATH
-            if [[ ":$PATH:" != *":$install_dir:"* ]]; then
-                log_warning "$install_dir is not in your PATH"
-                echo ""
-                echo "Add this to your shell profile (~/.bashrc, ~/.zshrc, etc.):"
-                echo "  export PATH=\"\$PATH:$install_dir\""
-                echo ""
-            fi
-
-            cd - > /dev/null
-            rm -rf "$tmp_dir"
-            return 0
-        else
-            log_error "Build failed"
-            cd - > /dev/null
-            rm -rf "$tmp_dir"
-            return 1
-        fi
-    else
-        log_error "Failed to clone repository"
-        rm -rf "$tmp_dir"
-        return 1
-    fi
-}
-
-# Install Go if not present (optional)
-offer_go_installation() {
-    log_warning "Go is not installed"
-    echo ""
-    echo "bd requires Go 1.23 or later. You can:"
-    echo "  1. Install Go from https://go.dev/dl/"
-    echo "  2. Use your package manager:"
-    echo "     - macOS: brew install go"
-    echo "     - Ubuntu/Debian: sudo apt install golang"
-    echo "     - Other Linux: Check your distro's package manager"
-    echo ""
-    echo "After installing Go, run this script again."
-    exit 1
-}
-
-# Verify installation
-verify_installation() {
-    if command -v bd &> /dev/null; then
-        log_success "bd is installed and ready!"
-        echo ""
-        bd version 2>/dev/null || echo "bd (development build)"
-        echo ""
-        echo "Get started:"
-        echo "  cd your-project"
-        echo "  bd init"
-        echo "  bd quickstart"
-        echo ""
-        return 0
-    else
-        log_error "bd was installed but is not in PATH"
-        return 1
-    fi
-}
-
-# Main installation flow
-main() {
-    echo ""
-    echo "🔗 Beads (bd) Installer"
-    echo ""
-
-    log_info "Detecting platform..."
-    local platform
-    platform=$(detect_platform)
-    log_info "Platform: $platform"
-
-    # Try go install first
-    if check_go; then
-        if install_with_go; then
-            verify_installation
-            exit 0
-        fi
-    fi
-
-    # If go install failed or Go not present, try building from source
-    log_warning "Falling back to building from source..."
-
-    if ! check_go; then
-        offer_go_installation
-    fi
-
-    if build_from_source; then
-        verify_installation
-        exit 0
-    fi
-
-    # All methods failed
-    log_error "Installation failed"
-    echo ""
-    echo "Manual installation:"
-    echo "  1. Install Go from https://go.dev/dl/"
-    echo "  2. Run: go install github.com/steveyegge/beads/cmd/bd@latest"
-    echo ""
-    exit 1
-}
-
-main "$@"