From b919c47fd8e8d7ecc1fe287ab4e1a435321bff90 Mon Sep 17 00:00:00 2001 From: Steve Yegge Date: Tue, 30 Dec 2025 18:13:12 -0800 Subject: [PATCH] Exclude agent type from bd ready by default Agent beads are identity/state tracking beads for agents, not actionable work items. --- .beads/issues.jsonl | 83 ++++++++++++++++---------------- internal/storage/sqlite/ready.go | 3 +- 2 files changed, 44 insertions(+), 42 deletions(-) diff --git a/.beads/issues.jsonl b/.beads/issues.jsonl index 7d0e8cdf..930fc6de 100644 --- a/.beads/issues.jsonl +++ b/.beads/issues.jsonl @@ -5,20 +5,20 @@ {"id":"bd-0a43","title":"Split monolithic sqlite.go into focused files","description":"internal/storage/sqlite/sqlite.go is 1050 lines containing initialization, 20+ CRUD methods, query building, and schema management.\n\nSplit into:\n- store.go: Store struct \u0026 initialization (150 lines)\n- bead_queries.go: Bead CRUD (300 lines)\n- work_queries.go: Work queries (200 lines) \n- stats_queries.go: Statistics (150 lines)\n- schema.go: Schema \u0026 migrations (150 lines)\n- helpers.go: Common utilities (100 lines)\n\nImpact: Impossible to understand at a glance; hard to find specific functionality; high cognitive load\n\nEffort: 6-8 hours","status":"tombstone","priority":0,"issue_type":"task","created_at":"2025-11-16T14:51:16.520465-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-0d5p","title":"Fix TestRunSync_Timeout failing on macOS","description":"The hooks timeout test fails because exec.CommandContext doesn't properly terminate child processes of shell scripts on macOS. The test creates a hook that runs 'sleep 60' with a 500ms timeout, but it waits the full 60 seconds.\n\nOptions to fix:\n- Use SysProcAttr{Setpgid: true} to create process group and kill the group\n- Skip test on darwin with build tag\n- Use a different approach for timeout testing\n\nLocation: internal/hooks/hooks_test.go:220-253","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T20:52:51.771217-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-0e02","title":"Code smell: Inconsistent error handling patterns","description":"Commands use a mix of error handling patterns:\n- FatalError()\n- FatalErrorRespectJSON()\n- fmt.Fprintf(os.Stderr, ...) + os.Exit(1)\n- Silent continue\n- Inconsistent resource cleanup (result.Close())\n\n**Example in show.go lines 89-146:**\nDifferent error paths use different patterns, some close resources, some don't.\n\n**Acceptance Criteria:**\n- [ ] Document error handling contract\n- [ ] Standardize on consistent pattern\n- [ ] Use defer for resource cleanup\n- [ ] Create helper for common fetch-and-handle pattern\n- [ ] Tests pass","status":"closed","priority":3,"issue_type":"chore","created_at":"2025-12-28T18:59:30.118-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-30T15:44:43.362524-08:00","closed_at":"2025-12-30T07:02:03.530317-08:00","close_reason":"Implemented: Added LogError, LogErrorRespectJSON, LogNotFound, LogNotFoundRespectJSON helpers to errors.go. Standardized show.go to use these helpers. Updated ERROR_HANDLING.md documentation. Tests pass.","dependencies":[{"issue_id":"bd-0e02","depends_on_id":"bd-ox1o","type":"blocks","created_at":"2025-12-28T19:00:23.683836-08:00","created_by":"daemon"}]} -{"id":"bd-0e3m","title":"Merge: jade-1767138549967","description":"branch: polecat/jade-1767138549967\ntarget: main\nsource_issue: jade-1767138549967\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T15:55:27.93798-08:00","created_by":"beads/polecats/jade","updated_at":"2025-12-30T15:55:27.93798-08:00"} +{"id":"bd-0e3m","title":"Merge: jade-1767138549967","description":"branch: polecat/jade-1767138549967\ntarget: main\nsource_issue: jade-1767138549967\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T15:55:27.93798-08:00","created_by":"beads/polecats/jade","updated_at":"2025-12-30T18:12:30.971134-08:00","closed_at":"2025-12-30T18:11:08.020787-08:00"} {"id":"bd-0fvq","title":"bd doctor should recommend bd prime migration for existing repos","description":"bd doctor should detect old beads integration patterns and recommend migrating to bd prime approach.\n\n## Current behavior\n- bd doctor checks if Claude hooks are installed globally\n- Doesn't check project-level integration (AGENTS.md, CLAUDE.md)\n- Doesn't recommend migration for repos using old patterns\n\n## Desired behavior\nbd doctor should detect and suggest:\n\n1. **Old slash command pattern detected**\n - Check for /beads:* references in AGENTS.md, CLAUDE.md\n - Suggest: These slash commands are deprecated, use bd prime hooks instead\n \n2. **No agent documentation**\n - Check if AGENTS.md or CLAUDE.md exists\n - Suggest: Run 'bd onboard' or 'bd setup claude' to document workflow\n \n3. **Old MCP-only pattern**\n - Check for instructions to use MCP tools but no bd prime hooks\n - Suggest: Add bd prime hooks for better token efficiency\n\n4. **Migration path**\n - Show: 'Run bd setup claude to add SessionStart/PreCompact hooks'\n - Show: 'Update AGENTS.md to reference bd prime instead of slash commands'\n\n## Example output\n\nāš  Warning: Old beads integration detected in CLAUDE.md\n Found: /beads:* slash command references (deprecated)\n Recommend: Migrate to bd prime hooks for better token efficiency\n Fix: Run 'bd setup claude' and update CLAUDE.md\n\nšŸ’” Tip: bd prime + hooks reduces token usage by 80-99% vs slash commands\n MCP mode: ~50 tokens vs ~10.5k for full MCP scan\n CLI mode: ~1-2k tokens with automatic context recovery\n\n## Benefits\n- Helps existing repos adopt new best practices\n- Clear migration path for users\n- Better token efficiency messaging","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-11-12T03:20:25.567748-08:00","updated_at":"2025-12-23T22:33:23.931274-08:00","closed_at":"2025-12-23T22:33:23.931274-08:00"} {"id":"bd-0j5y","title":"Merge: bd-05a8","description":"branch: polecat/valkyrie\ntarget: main\nsource_issue: bd-05a8\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-23T20:50:27.125378-08:00","updated_at":"2025-12-23T21:21:57.69697-08:00","closed_at":"2025-12-23T21:21:57.69697-08:00"} {"id":"bd-0kai","title":"Work on beads-ocs: Thin shim hooks to eliminate version d...","description":"Work on beads-ocs: Thin shim hooks to eliminate version drift (GH#615). Replace full hook scripts with thin shims that call bd hooks run. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:57:22.91347-08:00","updated_at":"2025-12-20T00:49:51.926425-08:00","closed_at":"2025-12-19T23:24:08.828172-08:00"} {"id":"bd-0kue","title":"Merge: onyx-1767106262992","description":"branch: polecat/onyx-1767106262992\ntarget: main\nsource_issue: onyx-1767106262992\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T06:59:46.964658-08:00","created_by":"beads/polecats/onyx","updated_at":"2025-12-30T15:44:43.3647-08:00","closed_at":"2025-12-30T10:27:23.072233-08:00"} {"id":"bd-0oqz","title":"Add GetMoleculeProgress RPC endpoint","description":"New RPC endpoint to get detailed progress for a specific molecule. Returns: moleculeID, title, assignee, and list of steps with their status (done/current/ready/blocked), start/close times. Used when user expands a worker in the activity feed TUI.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-23T16:26:38.137866-08:00","updated_at":"2025-12-23T18:27:49.033335-08:00","closed_at":"2025-12-23T18:27:49.033335-08:00"} -{"id":"bd-0qx5","title":"Implement Jira issue timestamp comparison for sync","description":"In cmd/bd/jira.go:633, there's a TODO for a full implementation that would fetch the Jira issue and compare timestamps to detect conflicts during sync.\n\nFile: cmd/bd/jira.go:633","status":"closed","priority":4,"issue_type":"feature","assignee":"beads/polecats/topaz","created_at":"2025-12-28T16:32:52.601594-08:00","created_by":"stevey","updated_at":"2025-12-30T16:00:07.968921-08:00","closed_at":"2025-12-30T16:00:07.968921-08:00","close_reason":"Implemented Jira timestamp comparison for sync. Added fetchJiraIssueTimestamp() to fetch timestamps from Jira REST API, updated detectJiraConflicts() to compare actual timestamps, and improved conflict resolution functions to display timestamp details."} +{"id":"bd-0qx5","title":"Implement Jira issue timestamp comparison for sync","description":"In cmd/bd/jira.go:633, there's a TODO for a full implementation that would fetch the Jira issue and compare timestamps to detect conflicts during sync.\n\nFile: cmd/bd/jira.go:633","status":"closed","priority":4,"issue_type":"feature","created_at":"2025-12-28T16:32:52.601594-08:00","created_by":"stevey","updated_at":"2025-12-30T18:12:30.977631-08:00","closed_at":"2025-12-30T16:00:07.968921-08:00","close_reason":"Implemented Jira timestamp comparison for sync. Added fetchJiraIssueTimestamp() to fetch timestamps from Jira REST API, updated detectJiraConflicts() to compare actual timestamps, and improved conflict resolution functions to display timestamp details."} {"id":"bd-0vg","title":"Pinned issues: persistent context markers","description":"Add ability to pin issues so they remain visible and are excluded from work-finding commands. Pinned issues serve as persistent context markers (handoffs, architectural notes, recovery instructions) that should not be claimed as work items.\n\nUse Cases:\n1. Handoff messages - Pin session handoffs so new agents always see them\n2. Architecture decisions - Pin ADRs or design notes for reference \n3. Recovery context - Pin amnesia-cure notes that help agents orient\n\nCore commands: bd pin, bd unpin, bd list --pinned/--no-pinned","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-18T23:33:10.911092-08:00","updated_at":"2025-12-21T11:30:28.989696-08:00","closed_at":"2025-12-21T11:30:28.989696-08:00"} {"id":"bd-0vtq","title":"Investigate JSONL hash mismatch warnings (bd-160)","description":"During v0.39.1 release, saw repeated warnings:\n\nWARNING: JSONL file hash mismatch detected (bd-160)\n This indicates JSONL and export_hashes are out of sync.\n Clearing export_hashes to force full re-export.\n\nThis appeared multiple times during wisp close operations. Questions:\n1. What causes export_hashes to drift from actual JSONL content?\n2. Is this expected during wisp operations (since wisps do not export)?\n3. Should wisp operations skip the hash check entirely?\n4. Is there actual data integrity risk or just noise?\n\nThe warning references bd-160 - may need to check that issue for context.","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-27T22:51:25.448856-08:00","created_by":"beads/crew/emma","updated_at":"2025-12-27T23:22:09.589444-08:00","closed_at":"2025-12-27T23:22:09.589444-08:00"} {"id":"bd-0w5","title":"Fix update-hooks verification in version-bump.yaml","description":"The update-hooks task verification command at version-bump.yaml:358 always succeeds due to '|| echo ...' fallback. Remove the fallback so verification actually fails when hooks aren't installed.","status":"tombstone","priority":3,"issue_type":"bug","created_at":"2025-12-17T22:23:06.55467-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-0zp7","title":"Add missing hook calls in mail reply and ack","description":"The mail commands are missing hook calls:\n\n1. runMailReply (mail.go:525-672) creates a message but doesn't call hookRunner.Run(hooks.EventMessage, ...) after creating the reply in direct mode (around line 640)\n\n2. runMailAck (mail.go:432-523) closes messages but doesn't call hookRunner.Run(hooks.EventClose, ...) after closing each message (around line 487 for daemon mode, 493 for direct mode)\n\nThis means GGT hooks won't fire for replies or message acknowledgments.","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T20:52:53.069412-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-118d","title":"Commit release v0.33.2","description":"Stage and commit the version bump:\n\n```bash\ngit add cmd/bd/version.go cmd/bd/info.go CHANGELOG.md\ngit commit -m \"release: v0.33.2\"\n```\n\nDo NOT push yet - tag first.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-21T16:10:13.761725-08:00","updated_at":"2025-12-21T17:29:31.791368-08:00","deleted_at":"2025-12-21T17:29:31.791368-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-1200","title":"Merge: jasper-1767106250817","description":"branch: polecat/jasper-1767106250817\ntarget: main\nsource_issue: jasper-1767106250817\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T07:05:01.45534-08:00","created_by":"beads/polecats/jasper","updated_at":"2025-12-30T07:05:01.45534-08:00"} -{"id":"bd-13c2","title":"Merge: garnet-1767138539231","description":"branch: polecat/garnet-1767138539231\ntarget: main\nsource_issue: garnet-1767138539231\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T16:00:34.708302-08:00","created_by":"beads/polecats/garnet","updated_at":"2025-12-30T16:00:34.708302-08:00"} +{"id":"bd-1200","title":"Merge: jasper-1767106250817","description":"branch: polecat/jasper-1767106250817\ntarget: main\nsource_issue: jasper-1767106250817\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T07:05:01.45534-08:00","created_by":"beads/polecats/jasper","updated_at":"2025-12-30T18:12:30.984243-08:00","closed_at":"2025-12-30T18:11:08.06873-08:00"} +{"id":"bd-13c2","title":"Merge: garnet-1767138539231","description":"branch: polecat/garnet-1767138539231\ntarget: main\nsource_issue: garnet-1767138539231\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T16:00:34.708302-08:00","created_by":"beads/polecats/garnet","updated_at":"2025-12-30T18:12:30.975825-08:00","closed_at":"2025-12-30T18:11:07.955982-08:00"} {"id":"bd-14ie","title":"Work on beads-2vn: Add simple built-in beads viewer (GH#6...","description":"Work on beads-2vn: Add simple built-in beads viewer (GH#654). Add bd list --pretty with --watch flag, tree view with priority/status symbols. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:47.305831-08:00","updated_at":"2025-12-19T23:28:32.429492-08:00","closed_at":"2025-12-19T23:23:13.928323-08:00"} {"id":"bd-14v0","title":"Add Windows code signing for bd.exe releases","description":"## Context\n\nGo binaries (including bd.exe) are commonly flagged by antivirus software as false positives due to heuristic detection. See docs/ANTIVIRUS.md for full details.\n\n## Problem\n\nKaspersky and other AV software flag bd.exe as PDM:Trojan.Win32.Generic, causing it to be quarantined or deleted.\n\n## Solution\n\nImplement code signing for Windows releases using:\n1. An EV (Extended Validation) code certificate\n2. Integration with GoReleaser to sign Windows binaries during release\n\n## Benefits\n\n- Reduces false positive rates over time as the certificate builds reputation\n- Provides tamper verification for users\n- Improves SmartScreen trust rating on Windows\n- Professional appearance for enterprise users\n\n## Implementation Steps\n\n1. Acquire EV code signing certificate (annual cost ~$300-500)\n2. Set up signtool or osslsigncode in release pipeline\n3. Update .goreleaser.yml to sign Windows binaries\n4. Update checksums to include signed binary hashes\n5. Document signing verification in ANTIVIRUS.md\n\n## References\n\n- docs/ANTIVIRUS.md - Current documentation\n- bd-t4u1 - Original Kaspersky false positive report\n- https://github.com/golang/go/issues/16292 - Go project discussion","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-23T23:46:48.459177-08:00","updated_at":"2025-12-23T23:54:41.912141-08:00","closed_at":"2025-12-23T23:54:41.912141-08:00","dependencies":[{"issue_id":"bd-14v0","depends_on_id":"bd-t4u1","type":"discovered-from","created_at":"2025-12-23T23:47:02.024159-08:00","created_by":"daemon"}]} {"id":"bd-1ban","title":"Test actor direct","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-26T20:46:02.423367-08:00","updated_at":"2025-12-28T09:26:06.083095-08:00","closed_at":"2025-12-28T09:26:06.083095-08:00"} @@ -46,12 +46,12 @@ {"id":"bd-28sq.4","title":"Fix JSON errors in comments.go","description":"Replace direct stderr writes with FatalErrorRespectJSON() in comments.go.\n\nCommands affected:\n- commentsCmd (list)\n- commentsAddCmd","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-25T13:32:09.696723-08:00","updated_at":"2025-12-25T13:54:19.640013-08:00","closed_at":"2025-12-25T13:54:19.640013-08:00","dependencies":[{"issue_id":"bd-28sq.4","depends_on_id":"bd-28sq","type":"parent-child","created_at":"2025-12-25T13:32:09.698366-08:00","created_by":"daemon"}]} {"id":"bd-28sq.5","title":"Fix JSON errors in epic.go","description":"Replace direct stderr writes with FatalErrorRespectJSON() in epic.go.\n\nCommands affected:\n- epicStatusCmd\n- epicCloseEligibleCmd","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-25T13:32:11.12219-08:00","updated_at":"2025-12-25T13:55:39.738404-08:00","closed_at":"2025-12-25T13:55:39.738404-08:00","dependencies":[{"issue_id":"bd-28sq.5","depends_on_id":"bd-28sq","type":"parent-child","created_at":"2025-12-25T13:32:11.124147-08:00","created_by":"daemon"}]} {"id":"bd-29fb","title":"Implement bd close --continue flag","description":"Auto-advance to next step in molecule when closing an issue. Referenced by gt-um6q, gt-lz13. Needed for molecule navigation workflow.","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-12-23T00:17:55.032875-08:00","updated_at":"2025-12-23T01:26:47.255313-08:00","closed_at":"2025-12-23T01:26:47.255313-08:00"} -{"id":"bd-2c64","title":"Merge: ruby-1767142029451","description":"branch: polecat/ruby-1767142029451\ntarget: main\nsource_issue: ruby-1767142029451\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T17:00:14.136568-08:00","created_by":"beads/polecats/ruby","updated_at":"2025-12-30T17:00:14.136568-08:00"} +{"id":"bd-2c64","title":"Merge: ruby-1767142029451","description":"branch: polecat/ruby-1767142029451\ntarget: main\nsource_issue: ruby-1767142029451\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T17:00:14.136568-08:00","created_by":"beads/polecats/ruby","updated_at":"2025-12-30T18:12:30.96303-08:00","closed_at":"2025-12-30T18:11:07.842778-08:00"} {"id":"bd-2dwo","title":"Remove deprecated daemon logger function","description":"In cmd/bd/daemon_logger.go:131, there's a TODO to remove a deprecated function once all callers are updated to use the new signature. Need to audit callers and clean up.\n\nFile: cmd/bd/daemon_logger.go:131","status":"closed","priority":4,"issue_type":"chore","created_at":"2025-12-28T16:32:39.513622-08:00","created_by":"stevey","updated_at":"2025-12-30T15:44:43.365401-08:00","closed_at":"2025-12-30T00:28:06.54315-08:00","close_reason":"Merged via refinery"} {"id":"bd-2ep8","title":"Update CHANGELOG.md with release notes","description":"Add meaningful release notes to CHANGELOG.md describing what changed in 0.30.7","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649053-08:00","updated_at":"2025-12-19T22:57:31.69559-08:00","closed_at":"2025-12-19T22:57:31.69559-08:00","dependencies":[{"issue_id":"bd-2ep8","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.650816-08:00","created_by":"stevey"},{"issue_id":"bd-2ep8","depends_on_id":"bd-rupw","type":"blocks","created_at":"2025-12-19T22:56:48.651136-08:00","created_by":"stevey"}]} {"id":"bd-2fs7","title":"Move pour/ephemeral under bd mol subcommand","description":"For consistency, bd pour and bd ephemeral should become bd mol pour and bd mol ephemeral:\n\nCurrent:\n bd mol list # Available protos\n bd mol show \u003cid\u003e # Proto details\n bd pour \u003cproto\u003e # Create mol ā† sticks out\n bd ephemeral \u003cproto\u003e # Create ephemeral ā† sticks out \n bd mol bond \u003cproto\u003e \u003cparent\u003e # Attach to existing mol\n bd mol squash \u003cid\u003e # Condense to digest\n bd mol burn \u003cid\u003e # Discard\n\nProposed:\n bd mol list\n bd mol show \u003cid\u003e\n bd mol pour \u003cproto\u003e # Moved under mol\n bd mol ephemeral \u003cproto\u003e # Moved under mol\n bd mol bond \u003cproto\u003e \u003cparent\u003e\n bd mol squash \u003cid\u003e\n bd mol burn \u003cid\u003e\n\nAll molecule operations should be under bd mol for discoverability and consistency.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-26T23:36:23.945902-08:00","created_by":"stevey","updated_at":"2025-12-26T23:41:01.096333-08:00","closed_at":"2025-12-26T23:41:01.096333-08:00"} {"id":"bd-2l03","title":"Implement await type handlers (gh:run, gh:pr, timer, human, mail)","description":"Implement condition checking for each await type.\n\n## Handlers Needed\n- gh:run:\u003cid\u003e - Check GitHub Actions run status via gh CLI\n- gh:pr:\u003cid\u003e - Check PR merged/closed status via gh CLI \n- timer:\u003cduration\u003e - Simple elapsed time check\n- human:\u003cprompt\u003e - Check for human approval (via mail?)\n- mail:\u003cpattern\u003e - Check for mail matching pattern\n\n## Implementation Location\nThis is Deacon logic, so likely in Gas Town (gt) not beads.\n\n## Interface\n```go\ntype AwaitHandler interface {\n Check(awaitID string) (completed bool, result string, err error)\n}\n```","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T11:44:38.492837-08:00","updated_at":"2025-12-23T12:19:44.283318-08:00","closed_at":"2025-12-23T12:19:44.283318-08:00","dependencies":[{"issue_id":"bd-2l03","depends_on_id":"bd-udsi","type":"parent-child","created_at":"2025-12-23T11:44:52.990746-08:00","created_by":"daemon"},{"issue_id":"bd-2l03","depends_on_id":"bd-is6m","type":"blocks","created_at":"2025-12-23T11:44:56.510792-08:00","created_by":"daemon"}]} -{"id":"bd-2lkh","title":"Merge: obsidian-1767138468820","description":"branch: polecat/obsidian-1767138468820\ntarget: main\nsource_issue: obsidian-1767138468820\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T16:14:15.963227-08:00","created_by":"beads/polecats/obsidian","updated_at":"2025-12-30T16:14:15.963227-08:00"} +{"id":"bd-2lkh","title":"Merge: obsidian-1767138468820","description":"branch: polecat/obsidian-1767138468820\ntarget: main\nsource_issue: obsidian-1767138468820\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T16:14:15.963227-08:00","created_by":"beads/polecats/obsidian","updated_at":"2025-12-30T18:12:30.983096-08:00","closed_at":"2025-12-30T18:11:07.923485-08:00"} {"id":"bd-2nl","title":"Refinery Patrol","description":"Merge queue processor patrol loop with verification gates.","status":"tombstone","priority":2,"issue_type":"molecule","created_at":"2025-12-26T21:20:47.681814-08:00","created_by":"deacon","updated_at":"2025-12-27T00:10:54.17463-08:00","deleted_at":"2025-12-27T00:10:54.17463-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"molecule"} {"id":"bd-2oo","title":"Edge Schema Consolidation: Unify all edges in dependencies table","description":"Consolidate all edge types into the dependency table per decision 004.\n\n## Changes\n- Add metadata column to dependencies table\n- Add thread_id column for conversation grouping\n- Remove redundant Issue fields: replies_to, relates_to, duplicate_of, superseded_by\n- Update all code to use dependencies API\n- Migration script for existing data\n- JSONL format change (breaking)\n\nReference: ~/gt/hop/decisions/004-edge-schema-consolidation.md","status":"closed","priority":0,"issue_type":"epic","created_at":"2025-12-18T02:01:48.785558-08:00","updated_at":"2025-12-18T02:49:10.61237-08:00","closed_at":"2025-12-18T02:49:10.61237-08:00"} {"id":"bd-2oo.1","title":"Add metadata and thread_id columns to dependencies table","description":"Schema changes:\n- ALTER TABLE dependencies ADD COLUMN metadata TEXT DEFAULT '{}'\n- ALTER TABLE dependencies ADD COLUMN thread_id TEXT DEFAULT ''\n- CREATE INDEX idx_dependencies_thread ON dependencies(thread_id) WHERE thread_id != ''","status":"closed","priority":0,"issue_type":"task","created_at":"2025-12-18T02:02:00.468223-08:00","updated_at":"2025-12-18T02:49:10.575133-08:00","closed_at":"2025-12-18T02:49:10.575133-08:00","dependencies":[{"issue_id":"bd-2oo.1","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:00.470012-08:00","created_by":"daemon"}]} @@ -72,7 +72,7 @@ {"id":"bd-2wh","title":"Test pinned for stats","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-18T21:47:09.334108-08:00","updated_at":"2025-12-18T21:47:25.17917-08:00","deleted_at":"2025-12-18T21:47:25.17917-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} {"id":"bd-2wm2","title":"bd repair: Check comments and events tables for orphans","description":"bd repair currently checks dependencies and labels tables, but the schema also has comments and events tables with issue_id foreign keys that could be orphaned.\n\nAdd orphan detection and cleanup for:\n- comments table (issue_id not in issues)\n- events table (issue_id not in issues)","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-29T12:48:11.563302-08:00","created_by":"stevey","updated_at":"2025-12-29T12:57:43.745176-08:00","closed_at":"2025-12-29T12:57:43.745176-08:00","close_reason":"Implemented in repair.go: added orphan detection for comments/events tables and --json output flag"} {"id":"bd-313v","title":"rpc: Rich mutation events not emitted","description":"The activity command (activity.go) references rich mutation event types (MutationBonded, MutationSquashed, MutationBurned, MutationStatus) that include metadata like OldStatus, NewStatus, ParentID, and StepCount.\n\nHowever, the emitMutation() function in server_core.go:141 only accepts (eventType, issueID) and only populates Type, IssueID, and Timestamp. The additional metadata fields are never set.\n\nNeed to either:\n1. Add an emitRichMutation() function that accepts the additional metadata\n2. Update call sites (close, bond, squash, burn operations) to emit rich events\n\nWithout this fix, the activity feed will never show:\n- Status transitions (in_progress -\u003e closed)\n- Bonded events with step counts\n- Parent molecule relationships\n\nDiscovered during code review of bd-xo1o implementation.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-23T04:06:17.39523-08:00","updated_at":"2025-12-23T04:13:19.205249-08:00","closed_at":"2025-12-23T04:13:19.205249-08:00"} -{"id":"bd-31ae","title":"Document labels-as-state pattern for operational state","description":"Labels on role beads cache current operational state for fast queries.\n\nConvention: \u003cdimension\u003e:\u003cvalue\u003e\n- patrol:muted / patrol:active\n- mode:degraded / mode:normal\n- status:idle / status:working\n\nPattern:\n1. Create event bead (full context, immutable history)\n2. Update role bead labels (current state cache)\n\nNo schema change needed - labels already exist. This task:\n- Document the convention in beads docs\n- Consider helper: bd state \u003crole\u003e \u003cdimension\u003e (queries label)\n- Consider helper: bd set-state \u003crole\u003e \u003cdimension\u003e=\u003cvalue\u003e (creates event + updates label)\n\nEvents are source of truth. Labels are cache.","status":"closed","priority":2,"issue_type":"task","assignee":"beads/polecats/jasper","created_at":"2025-12-30T15:15:46.697971-08:00","created_by":"gastown/crew/max","updated_at":"2025-12-30T15:51:34.364561-08:00","closed_at":"2025-12-30T15:51:34.364561-08:00","close_reason":"Added 'Labels as State Cache' section to docs/LABELS.md with convention, pattern, examples, and best practices"} +{"id":"bd-31ae","title":"Document labels-as-state pattern for operational state","description":"Labels on role beads cache current operational state for fast queries.\n\nConvention: \u003cdimension\u003e:\u003cvalue\u003e\n- patrol:muted / patrol:active\n- mode:degraded / mode:normal\n- status:idle / status:working\n\nPattern:\n1. Create event bead (full context, immutable history)\n2. Update role bead labels (current state cache)\n\nNo schema change needed - labels already exist. This task:\n- Document the convention in beads docs\n- Consider helper: bd state \u003crole\u003e \u003cdimension\u003e (queries label)\n- Consider helper: bd set-state \u003crole\u003e \u003cdimension\u003e=\u003cvalue\u003e (creates event + updates label)\n\nEvents are source of truth. Labels are cache.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-30T15:15:46.697971-08:00","created_by":"gastown/crew/max","updated_at":"2025-12-30T18:12:30.961022-08:00","closed_at":"2025-12-30T15:51:34.364561-08:00","close_reason":"Added 'Labels as State Cache' section to docs/LABELS.md with convention, pattern, examples, and best practices"} {"id":"bd-34q1","title":"Give --all flag actual meaning in bd list","description":"The --all flag exists but is currently a no-op ('flag provided for CLI familiarity'). Once we change the default to non-closed, --all should override to show all issues including closed.\n\nThis provides backwards compatibility for scripts that depend on seeing all issues.","notes":"## Implementation Plan\n\n### Code Changes (cmd/bd/list.go)\n\n1. **Update --all flag handling** (~line 889):\n```go\n// Currently: listCmd.Flags().Bool(\"all\", false, \"Show all issues (default behavior; flag provided for CLI familiarity)\")\n// Change to:\nlistCmd.Flags().Bool(\"all\", false, \"Show all issues including closed (overrides default filter)\")\n```\n\n2. **Check for --all in Run function** (before applying default filter):\n```go\nallFlag, _ := cmd.Flags().GetBool(\"all\")\nif status == \"\" \u0026\u0026 !allFlag {\n // Apply default non-closed filter\n filter.ExcludeStatus = []types.Status{\"closed\"}\n}\n// If --all is set, no ExcludeStatus applied = show everything\n```\n\n### Testing\n- `bd list --all` shows all issues including closed\n- `bd list` shows non-closed (from bd-mypl)\n- `bd list --all --status=open` - --all is ignored when explicit status given\n\n### Documentation\n- Update --help text\n- Add to migration guide: \"Use --all for previous default behavior\"","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-29T15:25:07.522236-08:00","created_by":"stevey","updated_at":"2025-12-29T17:53:30.241263-08:00","closed_at":"2025-12-29T17:53:30.241263-08:00","close_reason":"Implemented in single commit","labels":["gh:788"],"dependencies":[{"issue_id":"bd-34q1","depends_on_id":"bd-mypl","type":"blocks","created_at":"2025-12-29T15:25:20.671576-08:00","created_by":"daemon"}]} {"id":"bd-379","title":"Implement `bd setup cursor` for Cursor IDE integration","description":"Create a `bd setup cursor` command that integrates Beads workflow into Cursor IDE via .cursorrules file. Unlike Claude Code (which has hooks), Cursor uses a static rules file to provide context to its AI.","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-11-11T23:32:22.170083-08:00","updated_at":"2025-12-25T22:26:54.445182-08:00","closed_at":"2025-12-25T22:26:54.445182-08:00"} {"id":"bd-3852","title":"Add orphan detection migration","description":"Create migration to detect orphaned children in existing databases. Query: SELECT id FROM issues WHERE id LIKE '%.%' AND substr(id, 1, instr(id || '.', '.') - 1) NOT IN (SELECT id FROM issues). Log results, let user decide action (delete orphans or convert to top-level).","status":"closed","priority":2,"issue_type":"task","created_at":"2025-11-04T12:32:30.727044-08:00","updated_at":"2025-12-21T21:00:05.041582-08:00","closed_at":"2025-12-21T21:00:05.041582-08:00"} @@ -80,7 +80,7 @@ {"id":"bd-3bsz","title":"gt mail send: support reading message body from stdin","description":"Currently gt mail send -m requires the message as a command-line argument, which causes shell escaping issues with backticks, quotes, and special characters.\n\nAdd support for reading message body from stdin:\n- gt mail send addr -s 'Subject' --stdin # Read body from stdin\n- echo 'body' | gt mail send addr -s 'Subject' -m - # Convention: -m - means stdin\n\nThis would allow:\ncat \u003c\u003c'EOF' | gt mail send addr -s 'Subject' --stdin\nMessage with `backticks` and 'quotes' safely\nEOF\n\nWithout this, agents struggle to send handoff messages containing code snippets.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-23T03:21:39.496208-08:00","updated_at":"2025-12-23T12:19:44.443554-08:00","closed_at":"2025-12-23T12:19:44.443554-08:00"} {"id":"bd-3ggb","title":"Rebuild local binary","description":"Build and verify: go build -o bd ./cmd/bd \u0026\u0026 ./bd version","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:03.101428-08:00","updated_at":"2025-12-24T16:25:30.089869-08:00","dependencies":[{"issue_id":"bd-3ggb","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.748289-08:00","created_by":"daemon"},{"issue_id":"bd-3ggb","depends_on_id":"bd-4y4g","type":"blocks","created_at":"2025-12-18T22:43:20.950376-08:00","created_by":"daemon"}],"deleted_at":"2025-12-24T16:25:30.089869-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} {"id":"bd-3jcw","title":"activity.go: Missing test coverage","description":"The new activity.go command (from bd-xo1o.3) has no test coverage. At minimum, tests should cover:\n- parseDurationString() for various formats (5m, 1h, 2d, invalid)\n- filterEvents() for --mol and --type filtering\n- formatEvent() and getEventDisplay() for all mutation types\n\nDiscovered during code review of bd-xo1o implementation.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T04:06:15.563579-08:00","updated_at":"2025-12-23T04:14:56.150151-08:00","closed_at":"2025-12-23T04:14:56.150151-08:00"} -{"id":"bd-3rko","title":"Merge: topaz-1767142022153","description":"branch: polecat/topaz-1767142022153\ntarget: main\nsource_issue: topaz-1767142022153\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T17:06:22.77742-08:00","created_by":"beads/polecats/topaz","updated_at":"2025-12-30T17:06:22.77742-08:00"} +{"id":"bd-3rko","title":"Merge: topaz-1767142022153","description":"branch: polecat/topaz-1767142022153\ntarget: main\nsource_issue: topaz-1767142022153\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T17:06:22.77742-08:00","created_by":"beads/polecats/topaz","updated_at":"2025-12-30T18:12:30.969291-08:00","closed_at":"2025-12-30T18:11:07.793047-08:00"} {"id":"bd-3roq","title":"Add 'tracks' relation type for convoy tracking","description":"Add a new relation type 'tracks' for convoy ā†’ issue relationships.\n\nUnlike 'depends_on':\n- Non-blocking (tracked issue doesn't block convoy)\n- Cross-prefix capable (convoy in hq-* tracks issues in gt-*, bd-*)\n- Supports reverse lookup ('what convoys track this issue?')\n\nUsed by convoys to track issues across project chains without creating dependencies.\n\nRelated: hq-7h8jx (Convoy System epic in town beads)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-29T18:47:00.581639-08:00","created_by":"mayor","updated_at":"2025-12-29T21:04:52.609662-08:00","closed_at":"2025-12-29T21:04:52.609662-08:00","close_reason":"Closed"} {"id":"bd-3sz0","title":"Auto-repair stale merge driver configs with invalid placeholders","description":"Old bd versions (\u003c0.24.0) installed merge driver with invalid placeholders %L %R instead of %A %B. Add detection to bd doctor --fix: check if git config merge.beads.driver contains %L or %R, auto-repair to 'bd merge %A %O %A %B'. One-time migration for users who initialized with old versions.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-11-21T23:16:10.762808-08:00","updated_at":"2025-12-23T23:48:18.11858-08:00","closed_at":"2025-12-23T23:48:18.11858-08:00","dependencies":[{"issue_id":"bd-3sz0","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:10.763612-08:00","created_by":"daemon"}]} {"id":"bd-3u8m","title":"Create bd admin parent command and nest cleanup/compact/reset","description":"## Task\nCreate new `bd admin` parent command and move:\n- `bd cleanup` ā†’ `bd admin cleanup`\n- `bd compact` ā†’ `bd admin compact`\n- `bd reset` ā†’ `bd admin reset`\n\n## Implementation\n\n### 1. Create admin.go\nNew file with parent command:\n```go\nvar adminCmd = \u0026cobra.Command{\n Use: \"admin\",\n Short: \"Administrative commands for database maintenance\",\n Long: `Administrative commands for beads database maintenance.\n\nThese commands are for advanced users and should be used carefully:\n cleanup Delete closed issues and prune expired tombstones\n compact Compact old closed issues to save space\n reset Remove all beads data and configuration\n\nFor routine operations, prefer 'bd doctor --fix'.`,\n}\n\nfunc init() {\n rootCmd.AddCommand(adminCmd)\n adminCmd.AddCommand(cleanupCmd)\n adminCmd.AddCommand(compactCmd)\n adminCmd.AddCommand(resetCmd)\n}\n```\n\n### 2. Update cleanup.go, compact.go, reset.go\n- Remove `rootCmd.AddCommand()` from each init()\n- Keep all existing functionality\n\n### 3. Create hidden aliases for backwards compatibility\nTop-level hidden commands that forward to admin subcommands.\n\n### 4. Update docs (major updates)\n- docs/CLI_REFERENCE.md - cleanup, compact references\n- docs/QUICKSTART.md - compact, cleanup references\n- docs/FAQ.md - compact references\n- docs/TROUBLESHOOTING.md - compact references\n- docs/DELETIONS.md - compact reference\n- docs/CONFIG.md - compact reference\n- skills/beads/SKILL.md - compact reference\n- commands/compact.md - update all examples\n- examples/compaction/README.md - update examples\n\n## Files to create\n- cmd/bd/admin.go\n\n## Files to modify\n- cmd/bd/cleanup.go\n- cmd/bd/compact.go\n- cmd/bd/reset.go\n- cmd/bd/main.go (aliases)\n- Multiple docs (see list above)\n","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-27T15:10:41.836341-08:00","created_by":"mayor","updated_at":"2025-12-27T16:07:30.707323-08:00","closed_at":"2025-12-27T16:07:30.707323-08:00"} @@ -146,7 +146,7 @@ {"id":"bd-6s61","title":"Version Bump: {{version}}","description":"Release checklist for version {{version}}. This molecule ensures all release steps are completed properly.","status":"tombstone","priority":1,"issue_type":"epic","created_at":"2025-12-19T22:55:42.487701-08:00","updated_at":"2025-12-25T13:27:50.789625-08:00","labels":["molecule","template"],"deleted_at":"2025-12-24T16:25:31.251346-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"epic"} {"id":"bd-6sm6","title":"Improve test coverage for internal/export (37.1% ā†’ 60%)","description":"The export package has only 37.1% test coverage. Export functionality needs good coverage to ensure data integrity.\n\nCurrent coverage: 37.1%\nTarget coverage: 60%","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:06.802277-08:00","updated_at":"2025-12-23T22:32:29.16846-08:00","closed_at":"2025-12-23T22:32:29.16846-08:00"} {"id":"bd-6ss","title":"Improve test coverage","description":"The test suite reports less than 45% code coverage. Identify the specific uncovered areas of the codebase, including modules, functions, or features. Rank them by potential impact on system reliability and business value, from most to least, and provide actionable recommendations for improving coverage in each area.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-18T06:54:23.036822442-07:00","updated_at":"2025-12-18T07:17:49.245940799-07:00","closed_at":"2025-12-18T07:17:49.245940799-07:00"} -{"id":"bd-6vnu","title":"Merge: opal-1767142018955","description":"branch: polecat/opal-1767142018955\ntarget: main\nsource_issue: opal-1767142018955\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T17:14:02.067823-08:00","created_by":"beads/polecats/opal","updated_at":"2025-12-30T17:14:02.067823-08:00"} +{"id":"bd-6vnu","title":"Merge: opal-1767142018955","description":"branch: polecat/opal-1767142018955\ntarget: main\nsource_issue: opal-1767142018955\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T17:14:02.067823-08:00","created_by":"beads/polecats/opal","updated_at":"2025-12-30T18:12:30.973553-08:00","closed_at":"2025-12-30T18:11:07.776363-08:00"} {"id":"bd-6x6g","title":"Add multi-repo target repo switching in bd create","description":"In cmd/bd/create.go:164, there's a TODO to switch to the target repo for multi-repo support when creating issues. Currently the code may not properly handle creating issues in a different repo than the current one.\n\nFile: cmd/bd/create.go:164","status":"hooked","priority":3,"issue_type":"feature","created_at":"2025-12-28T16:32:37.130679-08:00","created_by":"stevey","updated_at":"2025-12-30T15:44:43.361095-08:00"} {"id":"bd-70an","title":"test pin","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-21T11:19:16.760214-08:00","updated_at":"2025-12-21T11:19:46.500688-08:00","closed_at":"2025-12-21T11:19:46.500688-08:00"} {"id":"bd-70c4","title":"Gate await fields cleared by --no-daemon CLI access (not multi-repo)","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-25T23:30:38.648182-08:00","updated_at":"2025-12-26T23:38:47.972075-08:00","closed_at":"2025-12-26T23:38:47.972075-08:00","comments":[{"id":3,"issue_id":"bd-70c4","author":"mayor","text":"## Summary\nGate await fields (await_type, await_id, timeout_ns, waiters) are cleared when a CLI command accesses the database directly (--no-daemon) while the daemon is running. This is separate from the multi-repo issue fixed in bd-gr4q.\n\n## Reproduction\n1. Start daemon: bd daemon --start\n2. Create gate: bd gate create --await timer:5s (fields stored correctly)\n3. Verify: sqlite3 .beads/beads.db shows timer|5s\n4. Run CLI with --no-daemon: bd show \u003cid\u003e --no-daemon --no-auto-import --no-auto-flush\n5. Check again: fields are now empty\n\n## Investigation Notes\n- NOT caused by autoImportIfNewer (verified with --no-auto-import flag)\n- NOT caused by HydrateFromMultiRepo (no multi-repo config, returns early)\n- NOT caused by molecule loader (only creates new issues)\n- NOT caused by migrations (gate_columns only adds columns)\n- No database triggers found\n\nThe clearing happens somewhere in sqlite.NewWithTimeout() initialization or command execution path.\n\n## Related\n- bd-gr4q fixed the multi-repo path but this is a different code path\n- The fix pattern (COALESCE/NULLIF) may need to be applied elsewhere","created_at":"2025-12-26T07:30:49Z"}]} @@ -185,7 +185,7 @@ {"id":"bd-7t9a","title":"MCP plugin: _find_beads_db_in_tree() should follow .beads/redirect files","description":"## Problem\nThe `_find_beads_db_in_tree()` function in `integrations/beads-mcp/src/beads_mcp/tools.py` does not follow `.beads/redirect` files.\n\n## Impact\nMCP beads tools fail from polecat/crew directories that use redirect files to share a beads database.\n\n## Root Cause\nWhen auto-detecting workspace, the MCP plugin looks for `.beads/*.db` files directly but doesn't check for or follow `redirect` files:\n\n```python\nbeads_dir = os.path.join(current, '.beads')\nif os.path.isdir(beads_dir):\n db_files = glob.glob(os.path.join(beads_dir, '*.db')) # Only looks for .db files\n valid_dbs = [f for f in db_files if '.backup' not in os.path.basename(f)]\n if valid_dbs:\n return current\n```\n\nPolecat directories have `.beads/redirect` files (e.g., containing `../../mayor/rig/.beads`) but no `.db` files, so `_find_beads_db_in_tree()` doesn't find them.\n\n## Expected Behavior\nThe function should:\n1. Check for `.beads/redirect` file first\n2. If found, follow the redirect to the actual beads location\n3. Verify the redirected location has a valid database\n\n## Reference\nThe Go implementation handles this correctly in `ResolveBeadsDir()` - see gastown `internal/beads/beads.go:23-60`.\n\n## Related\n- gt-tnw: MCP beads tools fail from polecat directories","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-29T23:57:21.710278-08:00","created_by":"gastown/polecats/capable","updated_at":"2025-12-30T00:05:38.307967-08:00","closed_at":"2025-12-30T00:05:38.307967-08:00","close_reason":"Fixed: added _resolve_beads_redirect() to follow .beads/redirect files in MCP plugin auto-detection"} {"id":"bd-7tuu","title":"Commit and push release","description":"git add -A \u0026\u0026 git commit \u0026\u0026 git push to trigger CI","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:02.053382-08:00","updated_at":"2025-12-20T01:23:52.484043-08:00","closed_at":"2025-12-20T01:23:52.484043-08:00","dependencies":[{"issue_id":"bd-7tuu","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.021087-08:00","created_by":"daemon"},{"issue_id":"bd-7tuu","depends_on_id":"bd-hw3w","type":"blocks","created_at":"2025-12-19T22:56:23.291591-08:00","created_by":"daemon"}]} {"id":"bd-7wrh","title":"Merge: jasper-1767083473604","description":"branch: polecat/jasper-1767083473604\ntarget: main\nsource_issue: jasper-1767083473604\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T00:39:04.84733-08:00","created_by":"beads/polecats/jasper","updated_at":"2025-12-30T00:54:58.805495-08:00","closed_at":"2025-12-30T00:54:58.805495-08:00","close_reason":"Branch polecat/jasper-1767083473604 no longer exists on remote"} -{"id":"bd-7xrg","title":"Refinery Patrol","description":"Merge queue processor patrol loop with verification gates.","status":"open","priority":2,"issue_type":"molecule","created_at":"2025-12-27T18:14:31.190713-08:00","updated_at":"2025-12-27T18:14:31.190713-08:00"} +{"id":"bd-7xrg","title":"Refinery Patrol","description":"Merge queue processor patrol loop with verification gates.","status":"closed","priority":2,"issue_type":"molecule","created_at":"2025-12-27T18:14:31.190713-08:00","updated_at":"2025-12-30T18:12:30.974709-08:00","closed_at":"2025-12-30T18:11:14.234636-08:00"} {"id":"bd-7yg","title":"Git merge driver uses invalid placeholders (%L, %R instead of %A, %B)","description":"## Problem\n\nThe beads git merge driver is configured with invalid Git placeholders:\n\n```\ngit config merge.beads.driver \"bd merge %A %O %L %R\"\n```\n\nGit doesn't recognize `%L` or `%R` as valid merge driver placeholders. The valid placeholders are:\n- `%O` = base (common ancestor)\n- `%A` = current version (ours)\n- `%B` = other version (theirs)\n\n## Impact\n\n- Affects ALL users when they have `.beads/beads.jsonl` merge conflicts\n- Automatic JSONL merge fails with error: \"error reading left file: failed to open file: open 7: no such file or directory\"\n- Users must manually resolve conflicts instead of getting automatic merge\n\n## Root Cause\n\nThe `bd init` command (or wherever the merge driver is configured) is using non-standard placeholders. When Git encounters `%L` and `%R`, it either passes them literally or interprets them incorrectly.\n\n## Fix\n\nUpdate the merge driver configuration to:\n```\ngit config merge.beads.driver \"bd merge %A %O %A %B\"\n```\n\nWhere:\n- 1st `%A` = output file (current file, will be overwritten)\n- `%O` = base (common ancestor)\n- 2nd `%A` = left/current version\n- `%B` = right/other version\n\n## Action Items\n\n1. Fix `bd init` (or equivalent setup command) to use correct placeholders\n2. Add migration/warning for existing users with misconfigured merge driver\n3. Update documentation with correct merge driver setup\n4. Consider adding validation when `bd init` is run","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-11-21T19:51:55.747608-05:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-7z4","title":"Add tests for delete operations","description":"Core delete functionality including deleteViaDaemon, createTombstone, and deleteIssue functions have 0% coverage. These are critical for data integrity and need comprehensive test coverage.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T07:00:34.867680882-07:00","updated_at":"2025-12-23T23:48:50.087306-08:00","closed_at":"2025-12-23T23:48:50.087306-08:00","dependencies":[{"issue_id":"bd-7z4","depends_on_id":"bd-6ss","type":"discovered-from","created_at":"2025-12-18T07:00:34.870254935-07:00","created_by":"matt"}]} {"id":"bd-7zka","title":"Implement formula features: repeat, for_each, branch, gate, compose.split","description":"Multiple formula features in internal/formula/types.go are marked as \"Not yet implemented\":\n\nIMPLEMENTED (TODOs removed):\n- Step.Expand: Inline expansion - implemented in ApplyInlineExpansions (expand.go)\n- Step.ExpandVars: Variable overrides for expansion - implemented alongside Expand\n\nSTILL NOT IMPLEMENTED (TODOs remain):\n- Step.Condition: Make step optional based on variable (types.go:177-180)\n- Step.Gate: Async wait condition for step (types.go:185-187)\n- Gate struct: Schema defined but not processed in bd cook (types.go:209-210)\n\nFile: internal/formula/types.go","status":"open","priority":3,"issue_type":"feature","created_at":"2025-12-28T16:32:54.493002-08:00","created_by":"stevey","updated_at":"2025-12-30T15:44:43.345999-08:00"} @@ -206,12 +206,12 @@ {"id":"bd-8x43","title":"Add 'bd where' command to show active beads location","description":"## Problem\n\nWhen using redirects, it's unclear which beads database is actually being used. This caused debugging confusion during the v0.39.0 release.\n\n## Proposed Solution\n\nAdd `bd where` command:\n\n```bash\nbd where\n# ā†’ /Users/stevey/gt/beads/mayor/rig/.beads (via redirect from crew/dave/.beads)\n\nbd where --json\n# ā†’ {\"path\": \"...\", \"redirected_from\": \"...\", \"prefix\": \"bd\"}\n```\n\n## Alternatives Considered\n\n- `bd info --beads-path` - but `bd where` is more discoverable\n- Just fix the UX so it's never confusing - defense in depth is better\n\n## Desire Paths\n\nThis supports the 'desire paths' design principle: make the system's behavior visible so agents can debug and understand it.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-27T21:15:52.666948-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-27T21:27:50.301295-08:00","closed_at":"2025-12-27T21:27:50.301295-08:00"} {"id":"bd-8y9t","title":"Remove bd mol spawn - use pour/wisp only","description":"Remove the spawn command from bd mol. Replace with:\n\n- bd pour \u003cproto\u003e - Instantiate as mol (liquid, persistent)\n- bd wisp \u003cproto\u003e - Instantiate as wisp (vapor, ephemeral)\n\nRationale:\n- 'spawn' doesn't fit the chemistry metaphor\n- Two phase transitions (pour/wisp) are clearer than one command with flags\n- Avoids confusion about defaults\n\nImplementation:\n1. Add bd pour command (currently bd mol spawn --pour)\n2. Add bd wisp command (currently bd mol spawn without --pour)\n3. Remove bd mol spawn\n4. Update all docs/tests\n\nGas Town tracking: gt-ingm.6","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-24T12:40:51.698189-08:00","updated_at":"2025-12-24T12:52:55.307-08:00","closed_at":"2025-12-24T12:52:55.307-08:00"} {"id":"bd-8zbo","title":"Code smell: runCook function is ~275 lines","description":"attached_args: Refactor runCook function (~275 lines)\n\nThe runCook() function in cmd/bd/cook.go (lines 83-357) is ~275 lines handling:\n\n1. Flag parsing and validation\n2. Mode determination (compile vs runtime)\n3. Formula parsing and resolution\n4. Control flow, advice, and expansion application\n5. Dry-run output\n6. Ephemeral mode JSON output\n7. Persist mode database operations\n8. Result display\n\nConsider extracting:\n- parseAndValidateFlags() - flag handling\n- loadAndResolveFormula() - parse, resolve, apply transformations\n- outputDryRun() - dry run display logic\n- outputEphemeral() - ephemeral JSON output\n- persistFormula() - database persistence logic\n\nThe function has multiple exit points and nested conditionals that make it hard to follow.\n\nLocation: cmd/bd/cook.go:83-357","status":"closed","priority":3,"issue_type":"chore","created_at":"2025-12-28T15:33:08.808191-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-28T16:37:29.397832-08:00","closed_at":"2025-12-28T16:37:29.397832-08:00","dependencies":[{"issue_id":"bd-8zbo","depends_on_id":"bd-784c","type":"parent-child","created_at":"2025-12-28T15:38:04.25998-08:00","created_by":"daemon"}]} -{"id":"bd-90fs","title":"Merge: amber-1767138546434","description":"branch: polecat/amber-1767138546434\ntarget: main\nsource_issue: amber-1767138546434\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T15:57:38.681293-08:00","created_by":"beads/polecats/amber","updated_at":"2025-12-30T15:57:38.681293-08:00"} +{"id":"bd-90fs","title":"Merge: amber-1767138546434","description":"branch: polecat/amber-1767138546434\ntarget: main\nsource_issue: amber-1767138546434\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T15:57:38.681293-08:00","created_by":"beads/polecats/amber","updated_at":"2025-12-30T18:12:30.966277-08:00","closed_at":"2025-12-30T18:11:08.005131-08:00"} {"id":"bd-90v","title":"bd prime: AI context loading and Claude Code integration","description":"Implement `bd prime` command and Claude Code hooks for context recovery. Hooks work with BOTH MCP server and CLI approaches - they solve the context memory problem (keeping bd workflow fresh after compaction) not the tool access problem (MCP vs CLI).","status":"closed","priority":2,"issue_type":"epic","created_at":"2025-11-11T23:31:12.119012-08:00","updated_at":"2025-12-25T22:26:54.442614-08:00","closed_at":"2025-12-25T22:26:54.442614-08:00"} {"id":"bd-9115","title":"CLI cleanup: Consolidate bd top-level commands","description":"## Problem\nbd has 76 top-level commands, making it hard to discover and remember.\n\n## Proposed Changes\n\n### Remove from top-level (nest instead):\n- `bd cook` ā†’ `bd formula cook` (cooking is a formula operation)\n- `bd pin` ā†’ already covered by `bd mol` commands\n- `bd thanks` ā†’ `bd info --thanks` or just README\n- `bd quickstart` ā†’ `bd help quickstart` or docs\n- `bd detect-pollution` ā†’ `bd doctor --check=pollution`\n\n### Consolidate migrations under `bd migrate`:\n- `bd migrate-hash-ids` ā†’ `bd migrate hash-ids`\n- `bd migrate-issues` ā†’ `bd migrate issues`\n- `bd migrate-sync` ā†’ `bd migrate sync`\n- `bd migrate-tombstones` ā†’ `bd migrate tombstones`\n\n### Consolidate admin under `bd admin`:\n- `bd cleanup` ā†’ `bd admin cleanup`\n- `bd compact` ā†’ `bd admin compact`\n- `bd reset` ā†’ `bd admin reset`\n\n## Backwards Compatibility\nKeep old commands as hidden aliases for one release cycle.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-27T14:28:03.299469-08:00","created_by":"mayor","updated_at":"2025-12-27T16:19:44.580326-08:00","closed_at":"2025-12-27T16:19:44.580326-08:00","dependencies":[{"issue_id":"bd-9115","depends_on_id":"bd-w3z7","type":"blocks","created_at":"2025-12-27T15:11:44.88081-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-do8e","type":"blocks","created_at":"2025-12-27T15:11:44.905058-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-3u8m","type":"blocks","created_at":"2025-12-27T15:11:44.929207-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-x0zl","type":"blocks","created_at":"2025-12-27T15:11:44.953799-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-wb9g","type":"blocks","created_at":"2025-12-27T15:11:44.977559-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-twbi","type":"blocks","created_at":"2025-12-27T15:11:45.002403-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-kff0","type":"blocks","created_at":"2025-12-27T15:11:45.027177-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-bxqv","type":"blocks","created_at":"2025-12-27T15:11:45.051629-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-5e9q","type":"blocks","created_at":"2025-12-27T15:11:45.07537-08:00","created_by":"daemon"}]} {"id":"bd-95k8","title":"Pinned field available in beads v0.37.0","description":"Hey max,\n\nHeads up on your mail overhaul work:\n\n1. **Pinned field is available** - beads v0.37.0 (released by dave earlier) includes the pinned field on issues. You'll want to add this to BeadsMessage in types.go.\n\n2. **Database migration** - Check if existing .beads databases need migration to support the pinned field. Run `bd doctor` to see if it flags anything.\n\n3. **Sorting task** - Once you have the pinned field, gt-ngu1 (pinned beads first in mail inbox) needs implementing. Since messages now come from `bd list --type=message`, you'll need to either:\n - Sort in listBeads() after fetching, or\n - Ensure bd list returns pinned items first (may already do this?)\n\nCheck what version of bd you're building against.\n\n-- Mayor","status":"closed","priority":2,"issue_type":"message","created_at":"2025-12-20T17:51:57.315956-08:00","updated_at":"2025-12-21T17:52:18.542169-08:00","closed_at":"2025-12-21T17:52:18.542169-08:00","labels":["from:beads-crew-dave","thread:thread-71ac20c7e432"]} {"id":"bd-987a","title":"bd mol run: panic slice bounds out of range in mol_run.go:130","description":"## Problem\nbd mol run panics after successfully creating the molecule:\n\n```\nāœ“ Molecule running: created 9 issues\n Root issue: gt-i4lo (pinned, in_progress)\n Assignee: stevey\n\nNext steps:\n bd ready # Find unblocked work in this molecule\npanic: runtime error: slice bounds out of range [:8] with length 7\n\ngoroutine 1 [running]:\nmain.runMolRun(0x1014fc0c0, {0x140001e0f80, 0x1, 0x10089daad?})\n /Users/stevey/gt/beads/crew/dave/cmd/bd/mol_run.go:130 +0xc38\n```\n\n## Reproduction\n```bash\nbd --no-daemon mol run gt-lwuu --var issue=gt-test123\n```\nWhere gt-lwuu is a mol-polecat-work proto with 8 child steps.\n\n## Impact\nThe molecule IS created successfully - the panic happens after creation when formatting the \"Next steps\" output.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-21T21:48:55.396018-08:00","updated_at":"2025-12-21T22:57:46.827469-08:00","closed_at":"2025-12-21T22:57:46.827469-08:00"} -{"id":"bd-98b4","title":"Merge: onyx-1767138516448","description":"branch: polecat/onyx-1767138516448\ntarget: main\nsource_issue: onyx-1767138516448\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T16:17:51.539362-08:00","created_by":"beads/polecats/onyx","updated_at":"2025-12-30T16:17:51.539362-08:00"} +{"id":"bd-98b4","title":"Merge: onyx-1767138516448","description":"branch: polecat/onyx-1767138516448\ntarget: main\nsource_issue: onyx-1767138516448\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T16:17:51.539362-08:00","created_by":"beads/polecats/onyx","updated_at":"2025-12-30T18:12:30.974128-08:00","closed_at":"2025-12-30T18:11:07.907737-08:00"} {"id":"bd-9avq","title":"Fix wisp leak in nodb mode writeIssuesToJSONL","description":"writeIssuesToJSONL in nodb.go calls writeJSONLAtomic without filtering wisps. This means any wisps created during a nodb session would be written to issues.jsonl, leaking ephemeral data into the git-tracked file.\n\nFix: Add the same wisp filter pattern used in sync_export.go, autoflush.go, and export.go:\n\n```go\n// Filter out wisps before writing\nfiltered := make([]*types.Issue, 0, len(issues))\nfor _, issue := range issues {\n if !issue.Wisp {\n filtered = append(filtered, issue)\n }\n}\nissues = filtered\n```\n\nLocation: cmd/bd/nodb.go:writeIssuesToJSONL()","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-24T21:15:47.980048-08:00","updated_at":"2025-12-24T21:18:42.607711-08:00","closed_at":"2025-12-24T21:18:42.607711-08:00"} {"id":"bd-9btu","title":"Code smell: Duplicated step collection functions in cook.go","description":"attached_args: Fix duplicated step collection functions in cook.go\n\nTwo pairs of nearly identical functions exist in cook.go:\n\n1. collectStepsRecursive() (line 754) vs collectStepsToSubgraph() (line 415)\n - Both iterate over steps and create issues\n - Main difference: one writes to DB, one builds in-memory subgraph\n \n2. collectDependencies() (line 833) vs collectDependenciesToSubgraph() (line 502)\n - Both collect dependencies from steps\n - Nearly identical logic\n\nConsider:\n1. Extract common step/dependency processing logic\n2. Use a strategy pattern or callback for the DB vs in-memory difference\n3. Create a single function that returns data, then have callers decide how to persist\n\nLocation: cmd/bd/cook.go:415-567 and cmd/bd/cook.go:754-898","status":"closed","priority":2,"issue_type":"chore","created_at":"2025-12-28T15:31:57.401447-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-28T16:41:07.719801-08:00","closed_at":"2025-12-28T16:41:07.719801-08:00","dependencies":[{"issue_id":"bd-9btu","depends_on_id":"bd-784c","type":"parent-child","created_at":"2025-12-28T15:38:04.168908-08:00","created_by":"daemon"}]} {"id":"bd-9cdc","title":"Update docs for import bug fix","description":"Update AGENTS.md, README.md, TROUBLESHOOTING.md with import.orphan_handling config documentation. Document resurrection behavior, tombstones, config modes. Add troubleshooting section for import failures with deleted parents.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-11-04T12:32:30.770415-08:00","updated_at":"2025-12-21T21:14:08.328627-08:00","closed_at":"2025-12-21T21:14:08.328627-08:00"} @@ -223,14 +223,14 @@ {"id":"bd-9qj5","title":"Merge: bd-c7y5","description":"branch: polecat/toast\ntarget: main\nsource_issue: bd-c7y5\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-23T20:45:02.626929-08:00","updated_at":"2025-12-23T21:21:57.699742-08:00","closed_at":"2025-12-23T21:21:57.699742-08:00"} {"id":"bd-9szg","title":"Test prefix bd","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T14:24:41.470665-08:00","created_by":"stevey","updated_at":"2025-12-27T14:24:50.420887-08:00","deleted_at":"2025-12-27T14:24:50.420887-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} {"id":"bd-9usz","title":"Test suite hangs/never finishes","description":"Running 'go test ./... -count=1' hangs indefinitely. The full test suite never completes, making it difficult to verify changes. Need to investigate which tests are hanging and fix or add timeouts.","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-16T21:56:27.80191-08:00","updated_at":"2025-12-23T23:48:57.837606-08:00","closed_at":"2025-12-23T23:48:57.837606-08:00"} -{"id":"bd-a0cp","title":"Consider using types.Status in merge package for type safety","description":"The merge package uses string for status comparison (e.g., result.Status == closed, issue.Status == StatusTombstone). The types package defines Status as a type alias with validation. While the merge package needs its own Issue struct for JSONL flexibility, it could import and use types.Status for constants to get compile-time type checking. Current code: if left == closed || right == closed. Could be: if left == string(types.StatusClosed). This is low priority since string comparison works correctly. Files: internal/merge/merge.go:44, 488, 501-521","status":"closed","priority":4,"issue_type":"task","assignee":"beads/polecats/jade","created_at":"2025-12-05T16:37:10.690424-08:00","updated_at":"2025-12-30T15:54:45.570222-08:00","closed_at":"2025-12-30T15:54:45.570222-08:00","close_reason":"Added StatusClosed constant derived from types.StatusClosed and replaced hardcoded strings with the constant for type safety"} +{"id":"bd-a0cp","title":"Consider using types.Status in merge package for type safety","description":"The merge package uses string for status comparison (e.g., result.Status == closed, issue.Status == StatusTombstone). The types package defines Status as a type alias with validation. While the merge package needs its own Issue struct for JSONL flexibility, it could import and use types.Status for constants to get compile-time type checking. Current code: if left == closed || right == closed. Could be: if left == string(types.StatusClosed). This is low priority since string comparison works correctly. Files: internal/merge/merge.go:44, 488, 501-521","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-05T16:37:10.690424-08:00","updated_at":"2025-12-30T18:12:30.980592-08:00","closed_at":"2025-12-30T15:54:45.570222-08:00","close_reason":"Added StatusClosed constant derived from types.StatusClosed and replaced hardcoded strings with the constant for type safety"} {"id":"bd-a15d","title":"Add test files for internal/storage","description":"The internal/storage package has no test files at all. This package provides the storage interface abstraction.\n\nCurrent coverage: N/A (no test files)\nTarget: Add basic interface tests","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:11.363017-08:00","updated_at":"2025-12-23T23:56:07.002735-08:00","closed_at":"2025-12-23T23:56:07.002735-08:00"} -{"id":"bd-a1t0","title":"Merge: opal-1767138520240","description":"branch: polecat/opal-1767138520240\ntarget: main\nsource_issue: opal-1767138520240\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T15:59:09.905942-08:00","created_by":"beads/polecats/opal","updated_at":"2025-12-30T15:59:09.905942-08:00"} +{"id":"bd-a1t0","title":"Merge: opal-1767138520240","description":"branch: polecat/opal-1767138520240\ntarget: main\nsource_issue: opal-1767138520240\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T15:59:09.905942-08:00","created_by":"beads/polecats/opal","updated_at":"2025-12-30T18:12:30.970486-08:00","closed_at":"2025-12-30T18:11:07.988358-08:00"} {"id":"bd-a3sj","title":"RemoveDependency fails on external deps - FK violation in dirty_issues","description":"In dependencies.go:225, RemoveDependency marks BOTH issueID and dependsOnID as dirty. For external refs (e.g., external:project:capability), dependsOnID doesn't exist in the issues table. This causes FK violation since dirty_issues.issue_id has FK constraint to issues.id.\n\nFix: Check if dependsOnID starts with 'external:' and only mark source issue as dirty, matching the logic in AddDependency (lines 162-170).\n\nRepro: bd dep rm \u003cissue\u003e external:project:capability","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-21T23:44:51.981138-08:00","updated_at":"2025-12-22T17:48:29.062424-08:00","closed_at":"2025-12-22T17:48:29.062424-08:00","dependencies":[{"issue_id":"bd-a3sj","depends_on_id":"bd-zmmy","type":"discovered-from","created_at":"2025-12-21T23:44:51.982343-08:00","created_by":"daemon"}]} {"id":"bd-a62m","title":"Update version to 0.33.2 in version.go","description":"Edit cmd/bd/version.go line 17:\n\n```go\nVersion = \"0.33.2\"\n```\n\nVerify with: `grep 'Version =' cmd/bd/version.go`","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-21T16:10:13.760384-08:00","updated_at":"2025-12-21T17:29:31.791368-08:00","deleted_at":"2025-12-21T17:29:31.791368-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-a9y3","title":"Add composite index (status, priority) for common list queries","description":"SearchIssues and GetReadyWork frequently filter by status and sort by priority. Currently uses two separate indexes.\n\n**Common query pattern (queries.go:1646-1647):**\n```sql\nWHERE status = ? \nORDER BY priority ASC, created_at DESC\n```\n\n**Problem:** Index merge or full scan when both columns are used.\n\n**Solution:** Add migration:\n```sql\nCREATE INDEX IF NOT EXISTS idx_issues_status_priority ON issues(status, priority);\n```\n\n**Expected impact:** Faster bd list, bd ready with filters. Particularly noticeable at 10K+ issues.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-22T22:58:50.515275-08:00","updated_at":"2025-12-22T23:15:13.838976-08:00","closed_at":"2025-12-22T23:15:13.838976-08:00","dependencies":[{"issue_id":"bd-a9y3","depends_on_id":"bd-h0we","type":"discovered-from","created_at":"2025-12-22T22:58:50.516072-08:00","created_by":"daemon"}]} {"id":"bd-aay","title":"Warn on invalid depends_on references in workflow templates","description":"workflow.go:780-781 silently skips invalid dependency names. Should log a warning when a depends_on reference doesn't match any task ID in the template.","status":"tombstone","priority":4,"issue_type":"task","created_at":"2025-12-17T22:23:04.325253-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-abjw","title":"Consider consolidating config.yaml parsing into shared utility","description":"Multiple places parse config.yaml with custom structs:\n\n1. **autoimport.go:148** - `localConfig{SyncBranch}`\n2. **main.go:310** - strings.Contains for no-db (fragile, see bd-r6k2)\n3. **doctor.go:863** - strings.Contains for no-db (fragile, see bd-r6k2)\n4. **internal/config/config.go** - Uses viper (but caches at startup, problematic for tests)\n\nConsider creating a shared utility in `internal/configfile/` or extending the viper config:\n\n```go\n// internal/configfile/yaml.go\ntype YAMLConfig struct {\n SyncBranch string `yaml:\"sync-branch\"`\n NoDb bool `yaml:\"no-db\"`\n IssuePrefix string `yaml:\"issue-prefix\"`\n Author string `yaml:\"author\"`\n}\n\nfunc LoadYAML(beadsDir string) (*YAMLConfig, error) {\n // Parse config.yaml with proper YAML library\n}\n```\n\nBenefits:\n- Single source of truth for config.yaml structure\n- Proper YAML parsing everywhere\n- Easier to add new config fields\n\nTrade-off: May add complexity for simple one-off reads.","status":"hooked","priority":4,"issue_type":"task","assignee":"beads/polecats/obsidian","created_at":"2025-12-07T02:03:26.067311-08:00","updated_at":"2025-12-30T16:46:46.228572-08:00"} +{"id":"bd-abjw","title":"Consider consolidating config.yaml parsing into shared utility","description":"Multiple places parse config.yaml with custom structs:\n\n1. **autoimport.go:148** - `localConfig{SyncBranch}`\n2. **main.go:310** - strings.Contains for no-db (fragile, see bd-r6k2)\n3. **doctor.go:863** - strings.Contains for no-db (fragile, see bd-r6k2)\n4. **internal/config/config.go** - Uses viper (but caches at startup, problematic for tests)\n\nConsider creating a shared utility in `internal/configfile/` or extending the viper config:\n\n```go\n// internal/configfile/yaml.go\ntype YAMLConfig struct {\n SyncBranch string `yaml:\"sync-branch\"`\n NoDb bool `yaml:\"no-db\"`\n IssuePrefix string `yaml:\"issue-prefix\"`\n Author string `yaml:\"author\"`\n}\n\nfunc LoadYAML(beadsDir string) (*YAMLConfig, error) {\n // Parse config.yaml with proper YAML library\n}\n```\n\nBenefits:\n- Single source of truth for config.yaml structure\n- Proper YAML parsing everywhere\n- Easier to add new config fields\n\nTrade-off: May add complexity for simple one-off reads.","status":"hooked","priority":4,"issue_type":"task","created_at":"2025-12-07T02:03:26.067311-08:00","updated_at":"2025-12-30T18:12:30.984817-08:00"} {"id":"bd-adoe","title":"Add --hard flag to bd cleanup to permanently cull tombstones before cutoff date","description":"Currently tombstones persist for 30 days before cleanup prunes them. Need an official way to force-cull tombstones earlier than the default TTL, for scenarios like cleaning house after extended absence where resurrection from old clones is not a concern. Proposed: bd cleanup --hard --older-than N to bypass the 30-day tombstone TTL.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:17:31.064914-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} {"id":"bd-aec5439f","title":"Update LINTING.md with current baseline","description":"After cleanup, document the remaining acceptable baseline in LINTING.md so we can track regression.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-10-27T18:53:10.38679-07:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-ag35","title":"Add daemon RPC endpoints for config and stale check","description":"Two TODOs request daemon RPC endpoints:\n\n1. cmd/bd/create.go:208 - Add RPC method to get config in daemon mode\n2. cmd/bd/mol_stale.go:67 - Add RPC endpoint for stale check\n\nThese would allow the CLI to query the daemon for configuration and staleness checks instead of reading directly.\n\nFiles:\n- cmd/bd/create.go:208\n- cmd/bd/mol_stale.go:67","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-28T16:32:38.113203-08:00","created_by":"stevey","updated_at":"2025-12-30T15:44:43.354686-08:00","closed_at":"2025-12-30T07:00:00.209327-08:00","close_reason":"Implemented GetConfig and MolStale RPC endpoints. CLI commands now work in daemon mode."} @@ -299,7 +299,7 @@ {"id":"bd-cbed9619.3","title":"Implement global N-way collision resolution algorithm","description":"**Summary:** Replaced pairwise collision resolution with a global N-way algorithm that deterministically resolves issue ID conflicts across multiple clones. The new approach groups collisions, deduplicates by content hash, and assigns sequential IDs to ensure consistent synchronization.\n\n**Key Decisions:**\n- Use content hash for global, stable sorting\n- Group collisions by base ID\n- Assign sequential IDs based on sorted unique versions\n- Eliminate order-dependent remapping logic\n\n**Resolution:** Implemented ResolveNWayCollisions function that guarantees deterministic issue ID assignment across multiple synchronization scenarios, solving the core challenge of maintaining consistency in distributed systems with potential conflicts.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:37:42.85616-07:00","updated_at":"2025-12-17T23:18:29.112335-08:00","dependencies":[{"issue_id":"bd-cbed9619.3","depends_on_id":"bd-cbed9619.5","type":"blocks","created_at":"2025-10-28T18:39:28.30886-07:00","created_by":"daemon"},{"issue_id":"bd-cbed9619.3","depends_on_id":"bd-cbed9619.4","type":"blocks","created_at":"2025-10-28T18:39:28.336312-07:00","created_by":"daemon"}],"deleted_at":"2025-12-17T23:18:29.112335-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} {"id":"bd-cbed9619.4","title":"Make DetectCollisions read-only (separate detection from modification)","description":"**Summary:** The project restructured the collision detection process in the database to separate read-only detection from state modification, eliminating race conditions and improving system reliability. This was achieved by introducing a two-phase approach: first detecting potential collisions, then applying resolution separately.\n\n**Key Decisions:**\n- Create read-only DetectCollisions method\n- Add RenameDetail to track potential issue renames\n- Implement atomic ApplyCollisionResolution function\n- Separate detection logic from database modification\n\n**Resolution:** The refactoring creates a more robust, composable collision handling mechanism that prevents partial failures and maintains database consistency during complex issue import scenarios.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:37:09.652326-07:00","updated_at":"2025-12-17T23:18:29.112637-08:00","dependencies":[{"issue_id":"bd-cbed9619.4","depends_on_id":"bd-cbed9619.5","type":"blocks","created_at":"2025-10-28T18:39:28.285653-07:00","created_by":"daemon"}],"deleted_at":"2025-12-17T23:18:29.112637-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} {"id":"bd-cbed9619.5","title":"Add content-addressable identity to Issue type","description":"**Summary:** Added content-addressable identity to Issue type by implementing a ContentHash field that generates a unique SHA256 fingerprint based on semantic issue content. This resolves issue identification challenges when multiple system instances create issues with identical IDs but different contents.\n\n**Key Decisions:**\n- Use SHA256 for content hashing\n- Hash excludes ID and timestamps\n- Compute hash automatically at creation/import time\n- Add database column for hash storage\n\n**Resolution:** Successfully implemented a deterministic content hashing mechanism that enables reliable issue identification across distributed systems, improving data integrity and collision detection.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:36:44.914967-07:00","updated_at":"2025-12-17T23:18:29.112933-08:00","deleted_at":"2025-12-17T23:18:29.112933-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-cfxq","title":"Merge: topaz-1767106269860","description":"branch: polecat/topaz-1767106269860\ntarget: main\nsource_issue: topaz-1767106269860\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T07:18:49.114417-08:00","created_by":"beads/polecats/topaz","updated_at":"2025-12-30T07:18:49.114417-08:00"} +{"id":"bd-cfxq","title":"Merge: topaz-1767106269860","description":"branch: polecat/topaz-1767106269860\ntarget: main\nsource_issue: topaz-1767106269860\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T07:18:49.114417-08:00","created_by":"beads/polecats/topaz","updated_at":"2025-12-30T18:12:30.985385-08:00","closed_at":"2025-12-30T18:11:08.052794-08:00"} {"id":"bd-cils","title":"Work on beads-2nh: Fix gt spawn --issue to find issues in...","description":"Work on beads-2nh: Fix gt spawn --issue to find issues in rig's beads database. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:47.573854-08:00","updated_at":"2025-12-20T00:49:51.927884-08:00","closed_at":"2025-12-19T23:28:28.605343-08:00"} {"id":"bd-cj2e","title":"bd update --parent: allow reparenting issues","description":"**Request:** Add `--parent` flag to `bd update` command.\n\n**Use case:** When renaming/migrating an epic (e.g., gt-oki8p ā†’ gt-liftoff), need to reparent child issues to the new epic.\n\n**Current workaround:** None clean - must delete and recreate children, or manually edit JSONL.\n\n**Proposed:**\n```bash\nbd update gt-j0gx2 --parent=gt-liftoff\n```\n\n**Note:** `bd create` already has `--parent` flag, so the semantics are established.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-27T21:42:44.396998-08:00","created_by":"mayor","updated_at":"2025-12-27T22:17:12.346147-08:00","closed_at":"2025-12-27T22:17:12.346147-08:00"} {"id":"bd-cnwx","title":"Refactor mol.go: split 1200+ line file into subcommands","description":"## Problem\n\ncmd/bd/mol.go has grown to 1200+ lines with all molecule subcommands in one file.\n\n## Current State\n- mol.go: 1218 lines (bond, spawn, run, distill, catalog, show, etc.)\n- Hard to navigate, review, and maintain\n\n## Proposed Structure\nSplit into separate files by subcommand:\n```\ncmd/bd/\nā”œā”€ā”€ mol.go # Root command, shared helpers\nā”œā”€ā”€ mol_bond.go # bd mol bond\nā”œā”€ā”€ mol_spawn.go # bd mol spawn \nā”œā”€ā”€ mol_run.go # bd mol run\nā”œā”€ā”€ mol_distill.go # bd mol distill\nā”œā”€ā”€ mol_catalog.go # bd mol catalog\nā”œā”€ā”€ mol_show.go # bd mol show\nā””ā”€ā”€ mol_test.go # Tests (already separate)\n```\n\n## Benefits\n- Easier code review\n- Better separation of concerns\n- Simpler navigation\n- Each subcommand self-contained","status":"closed","priority":2,"issue_type":"chore","created_at":"2025-12-21T11:30:58.832192-08:00","updated_at":"2025-12-21T11:42:49.390824-08:00","closed_at":"2025-12-21T11:42:49.390824-08:00"} @@ -342,9 +342,9 @@ {"id":"bd-e1085716","title":"bd validate - Comprehensive health check","description":"Run all validation checks in one command.\n\nChecks:\n- Duplicates\n- Orphaned dependencies\n- Test pollution\n- Git conflicts\n\nSupports --fix-all for auto-repair.\n\nDepends on bd-cbed9619.1, bd-0dcea000, bd-31aab707, bd-9826b69a.\n\nFiles: cmd/bd/validate.go (new)","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-29T23:05:13.980679-07:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-e7ou","title":"Fix --as flag: uses title instead of ID in mol bond","description":"In bondProtoProto, the --as flag is documented as 'Custom ID for compound proto' but the implementation uses it as the title, not the issue ID.\n\n**Current behavior (mol.go:637-638):**\n```go\nif customID != '' {\n compoundTitle = customID // Used as title, not ID\n}\n```\n\n**Options:**\n1. Change flag description to say 'Custom title' (documentation fix)\n2. Actually use it as a custom ID prefix or full ID (feature change)\n3. Add separate --title flag and make --as actually set ID\n\nRecommend option 1 for simplest fix - change 'Custom ID' to 'Custom title' in the flag description.","status":"closed","priority":3,"issue_type":"bug","created_at":"2025-12-21T10:22:59.069368-08:00","updated_at":"2025-12-21T21:18:48.514513-08:00","closed_at":"2025-12-21T21:18:48.514513-08:00"} {"id":"bd-e8kq","title":"Consolidate migrate-* commands into migrate subcommands","description":"Move migrate-hash-ids, migrate-issues, migrate-sync, migrate-tombstones under 'migrate' as subcommands. Reduces 5 top-level commands to 1.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-28T12:59:09.187369-08:00","created_by":"stevey","updated_at":"2025-12-28T13:02:51.321846-08:00","closed_at":"2025-12-28T13:02:51.321848-08:00"} -{"id":"bd-ecmd","title":"Add type: event for state transitions","description":"Events capture operational state changes as immutable records.\n\nFields needed:\n- event_type: string (namespaced category like patrol.muted, agent.started) \n- actor: string (entity URI who caused this)\n- target: string (entity URI or bead ID affected)\n- payload: object (event-specific JSON data)\n\nExample:\n id: evt-x7k2\n type: event\n event_type: patrol.muted\n actor: human:overseer\n target: agent:deacon\n payload: {reason: fixing deadlock, until: gt-abc1}\n\nThis enables:\n- bd activity --follow showing events\n- bd list --type=event --target=agent:deacon\n- Full audit trail for operational state\n- HOP-compatible transaction records","status":"closed","priority":1,"issue_type":"feature","assignee":"beads/polecats/obsidian","created_at":"2025-12-30T15:15:23.440095-08:00","created_by":"gastown/crew/max","updated_at":"2025-12-30T16:13:57.467275-08:00","closed_at":"2025-12-30T16:13:57.467275-08:00","close_reason":"Implemented type: event for state transitions with all required fields"} +{"id":"bd-ecmd","title":"Add type: event for state transitions","description":"Events capture operational state changes as immutable records.\n\nFields needed:\n- event_type: string (namespaced category like patrol.muted, agent.started) \n- actor: string (entity URI who caused this)\n- target: string (entity URI or bead ID affected)\n- payload: object (event-specific JSON data)\n\nExample:\n id: evt-x7k2\n type: event\n event_type: patrol.muted\n actor: human:overseer\n target: agent:deacon\n payload: {reason: fixing deadlock, until: gt-abc1}\n\nThis enables:\n- bd activity --follow showing events\n- bd list --type=event --target=agent:deacon\n- Full audit trail for operational state\n- HOP-compatible transaction records","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-12-30T15:15:23.440095-08:00","created_by":"gastown/crew/max","updated_at":"2025-12-30T18:12:30.97233-08:00","closed_at":"2025-12-30T16:13:57.467275-08:00","close_reason":"Implemented type: event for state transitions with all required fields"} {"id":"bd-efo6","title":"Test cross-rig issue creation","description":"Testing --rig flag from town root","status":"tombstone","priority":3,"issue_type":"task","created_at":"2025-12-27T00:43:21.006012-08:00","created_by":"stevey","updated_at":"2025-12-27T00:43:27.389223-08:00","deleted_at":"2025-12-27T00:43:27.389223-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-ehwp","title":"Merge: ruby-1767138542815","description":"branch: polecat/ruby-1767138542815\ntarget: main\nsource_issue: ruby-1767138542815\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T15:59:42.840764-08:00","created_by":"beads/polecats/ruby","updated_at":"2025-12-30T15:59:42.840764-08:00"} +{"id":"bd-ehwp","title":"Merge: ruby-1767138542815","description":"branch: polecat/ruby-1767138542815\ntarget: main\nsource_issue: ruby-1767138542815\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T15:59:42.840764-08:00","created_by":"beads/polecats/ruby","updated_at":"2025-12-30T18:12:30.981876-08:00","closed_at":"2025-12-30T18:11:07.972179-08:00"} {"id":"bd-eijl","title":"bd ship command for publishing capabilities","description":"Add `bd ship \u003ccapability\u003e` command that:\n\n1. Finds issue with `export:\u003ccapability\u003e` label\n2. Validates issue is closed (or --force to override)\n3. Adds `provides:\u003ccapability\u003e` label\n4. Protects `provides:*` namespace (only bd ship can add these labels)\n\nExample:\n```bash\nbd ship mol-run-assignee\n# Output: Shipped mol-run-assignee (bd-xyz)\n```\n\nPart of cross-project dependency system.\nSee: gastown/docs/cross-project-deps.md","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-21T22:37:19.123024-08:00","updated_at":"2025-12-21T23:11:47.498859-08:00","closed_at":"2025-12-21T23:11:47.498859-08:00"} {"id":"bd-eko4","title":"Add pre-migration orphan cleanup to avoid chicken-and-egg fix failure","description":"## Problem\n\nWhen the database has orphaned foreign key references (dependencies or labels pointing to non-existent issues), the migration invariant check fails, preventing the database from opening. This creates a chicken-and-egg problem:\n\n1. `bd doctor --fix` tries to open the database\n2. Opening triggers migrations with invariant checks\n3. Invariant check fails due to orphaned refs\n4. Fix never runs because database won't open\n\n## Root Cause\n\nAggressive tombstone deletion (e.g., deleting ~1000 old tombstones) left behind orphaned:\n- 218+ dependencies where issue_id not in issues\n- 222+ dependencies where depends_on_id not in issues \n- 30+ labels where issue_id not in issues\n\n## Current Workaround\n\nDirect SQL to clean up before bd can run:\n```sql\nDELETE FROM dependencies WHERE NOT EXISTS (SELECT 1 FROM issues WHERE id = issue_id);\nDELETE FROM dependencies WHERE NOT EXISTS (SELECT 1 FROM issues WHERE id = depends_on_id) AND depends_on_id NOT LIKE 'external:%';\nDELETE FROM labels WHERE NOT EXISTS (SELECT 1 FROM issues WHERE id = issue_id);\n```\n\n## Proposed Fix\n\nAdd a pre-migration cleanup step that runs BEFORE invariant checks:\n1. Option A: Run orphan cleanup as part of migrations (before invariant check)\n2. Option B: Add `bd doctor --force-fix` that bypasses invariant checks\n3. Option C: Have invariant check auto-clean orphans instead of failing\n\nOption A is cleanest - orphan cleanup should be part of normal migration.","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-28T23:18:24.65227-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-29T13:46:30.625571-08:00","closed_at":"2025-12-29T13:46:30.625571-08:00","close_reason":"Implemented Option A: CleanOrphanedRefs runs before captureSnapshot in RunMigrations, preventing chicken-and-egg problem"} {"id":"bd-elqd","title":"Systematic bd sync stability investigation","description":"## Context\n\nbd sync has chronic instability issues that have persisted since inception:\n- issues.jsonl is always dirty after push\n- bd sync often creates messes requiring manual cleanup\n- Problems escalating despite accumulated bug fixes\n- Workarounds are getting increasingly draconian\n\n## Goal\n\nSystematically observe and diagnose bd sync failures rather than applying band-aid fixes.\n\n## Approach\n\n1. Start fresh session with latest binary (all fixes applied)\n2. Run bd sync and carefully observe what happens\n3. Document exact sequence of events when things go wrong\n4. File specific issues for each discrete problem identified\n5. Track the root causes, not just symptoms\n\n## Test Environment\n\n- Fresh clone or clean state\n- Latest bd binary with all bug fixes\n- Monitor both local and remote JSONL state\n- Check for timing issues, race conditions, merge conflicts\n\n## Success Criteria\n\n- Identify root causes of sync instability\n- Create actionable issues for each problem\n- Eventually achieve stable bd sync (no manual intervention needed)","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T22:57:25.35289-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} @@ -389,10 +389,10 @@ {"id":"bd-gqxd","title":"Enrich MutationEvent with title and assignee","description":"Current MutationEvent only has IssueID, no context. Add Title and Assignee fields so activity feeds can display meaningful info without extra lookups. Emit these fields when creating mutation events in server_core.go.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-23T16:26:34.907259-08:00","updated_at":"2025-12-23T16:39:39.229462-08:00","closed_at":"2025-12-23T16:39:39.229462-08:00"} {"id":"bd-gr4q","title":"Gate await fields cleared by auto-flush/auto-import cycle","description":"## Problem\n\nWhen creating a gate with `--await` fields (e.g., `gh:run:123`), the await_type and await_id are initially stored correctly in the SQLite database. However, they get cleared (set to empty strings) during subsequent bd commands due to the auto-flush/auto-import cycle.\n\n## Reproduction Steps\n\n1. Create a gate with await:\n ```\n bd gate create --molecule test-mol --await gh:run:20517738002\n ```\n Output shows correct `await_type: gh:run, await_id: 20517738002`\n\n2. Check database - fields are present\n\n3. Run any bd command (e.g., `bd list`)\n\n4. Check database again - await_type and await_id are now empty\n\n## Root Cause\n\nGates are wisps (ephemeral issues). During the auto-flush cycle:\n1. Auto-flush exports issues to JSONL (filtering out wisps)\n2. Auto-import reads JSONL and updates DB rows\n3. The update clears fields that weren't in the JSONL (including await fields)\n\n## Workaround\n\nUsing `--no-auto-import --no-auto-flush` flags preserves the fields, but this isn't practical for normal use.\n\n## Impact\n\nGitHub gate evaluation (`bd gate eval`) cannot work because by the time eval runs, the await fields have been cleared.\n\n## Suggested Fix\n\nEither:\n1. Don't clear await fields during auto-import if they weren't in the source\n2. Store wisp fields separately from the main JSONL export\n3. Include wisps in export but filter them at sync time","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-25T22:59:11.309657-08:00","updated_at":"2025-12-25T23:20:20.33151-08:00","closed_at":"2025-12-25T23:20:20.33151-08:00"} {"id":"bd-gxq","title":"Simplify bd onboard to minimal AGENTS.md snippet pointing to bd prime","description":"## Context\nGH#604 raised concerns about bd onboard bloating AGENTS.md with ~100+ lines of static instructions that:\n- Load every session whether beads is being used or not\n- Get stale when bd upgrades\n- Waste tokens\n\n## Solution\nSimplify `bd onboard` to output a minimal snippet (~2 lines) that points to `bd prime`:\n\n```markdown\n## Issue Tracking\nThis project uses beads (`bd`) for issue tracking.\nRun `bd prime` for workflow context, or hooks auto-inject it.\n```\n\n## Rationale\n- `bd prime` is dynamic, concise (~80 lines), and always matches installed bd version\n- Hooks already auto-inject `bd prime` at session start when .beads/ detected\n- AGENTS.md only needs to mention beads exists, not contain full instructions\n\n## Implementation\n1. Update `cmd/bd/onboard.go` to output minimal snippet\n2. Keep `--output` flag for BD_GUIDE.md generation (may still be useful)\n3. Update help text to explain the new approach","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T11:42:38.604891-08:00","updated_at":"2025-12-18T11:47:28.020419-08:00","closed_at":"2025-12-18T11:47:28.020419-08:00"} -{"id":"bd-h048","title":"Refactor sync_test to use direct import logic","description":"In cmd/bd/sync_test.go:444, there's a TODO to refactor the test to use direct import logic instead of subprocess calls. This would make the test more reliable and faster.\n\nFile: cmd/bd/sync_test.go:444","status":"closed","priority":4,"issue_type":"chore","assignee":"beads/polecats/garnet","created_at":"2025-12-28T16:32:55.612958-08:00","created_by":"stevey","updated_at":"2025-12-30T16:00:09.642672-08:00","closed_at":"2025-12-30T16:00:09.642672-08:00","close_reason":"Refactored test to use direct import logic via importIssuesCore instead of subprocess. Test now passes."} +{"id":"bd-h048","title":"Refactor sync_test to use direct import logic","description":"In cmd/bd/sync_test.go:444, there's a TODO to refactor the test to use direct import logic instead of subprocess calls. This would make the test more reliable and faster.\n\nFile: cmd/bd/sync_test.go:444","status":"closed","priority":4,"issue_type":"chore","created_at":"2025-12-28T16:32:55.612958-08:00","created_by":"stevey","updated_at":"2025-12-30T18:12:30.968094-08:00","closed_at":"2025-12-30T16:00:09.642672-08:00","close_reason":"Refactored test to use direct import logic via importIssuesCore instead of subprocess. Test now passes."} {"id":"bd-h0we","title":"Review SQLite indexes and scaling bottlenecks","description":"Audit the beads SQLite schema for:\n\n## Index Review\n- Are all frequently-queried columns indexed?\n- Are compound indexes needed for common query patterns?\n- Any missing indexes on foreign keys or filter columns?\n\n## Scaling Bottlenecks\n- How does performance degrade with 10k, 100k, 1M issues?\n- Full table scans in hot paths?\n- JSONL export/import performance at scale\n- Transaction contention in multi-agent scenarios\n\n## Common Query Patterns to Optimize\n- bd ready (status + blocked_by resolution)\n- bd list with filters (status, type, priority, labels)\n- bd show with dependency graph traversal\n- bd sync import/export\n\n## Deliverables\n- Document current indexes\n- Identify missing indexes\n- Benchmark key operations at scale\n- Recommend schema improvements","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-21T23:41:06.481881-08:00","updated_at":"2025-12-22T22:59:25.178175-08:00","closed_at":"2025-12-22T22:59:25.178175-08:00"} {"id":"bd-h27p","title":"Merge: bd-g4b4","description":"branch: polecat/Hooker\ntarget: main\nsource_issue: bd-g4b4\nrig: beads","status":"closed","priority":3,"issue_type":"merge-request","created_at":"2025-12-23T13:38:50.707153-08:00","updated_at":"2025-12-23T19:12:08.357806-08:00","closed_at":"2025-12-23T19:12:08.357806-08:00"} -{"id":"bd-h4tj","title":"Refinery Patrol","description":"Merge queue processor patrol loop with verification gates.","status":"open","priority":2,"issue_type":"molecule","created_at":"2025-12-27T19:24:07.068355-08:00","created_by":"deacon","updated_at":"2025-12-27T19:24:07.068355-08:00"} +{"id":"bd-h4tj","title":"Refinery Patrol","description":"Merge queue processor patrol loop with verification gates.","status":"closed","priority":2,"issue_type":"molecule","created_at":"2025-12-27T19:24:07.068355-08:00","created_by":"deacon","updated_at":"2025-12-30T18:12:30.964309-08:00","closed_at":"2025-12-30T18:11:14.218164-08:00"} {"id":"bd-h502","title":"Swarm: Test epic for duplicate swarm","description":"Swarm molecule orchestrating epic bd-4d9d.\n\nEpic: bd-4d9d\nCoordinator: ","status":"closed","priority":2,"issue_type":"molecule","created_at":"2025-12-28T21:59:45.597534-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-29T13:40:29.713516-08:00","closed_at":"2025-12-29T13:40:29.713516-08:00","close_reason":"Stale/spurious - test artifacts, merged PRs, or auto-close candidates","dependencies":[{"issue_id":"bd-h502","depends_on_id":"bd-4d9d","type":"relates-to","created_at":"2025-12-28T21:59:45.598237-08:00","created_by":"beads/crew/dave"}]} {"id":"bd-h6bo","title":"Protos should have distinct prefix (e.g., proto-)","description":"Currently protos use the same bd- prefix as regular issues, making them visually indistinguishable. When you see bd-7bs4 it looks like work to squash, not a reusable template.\n\n**Problem:**\n- Protos look like regular issues\n- No visual signal that something is a template vs active work\n- Easy to accidentally close/modify protos thinking they're issues\n\n**Proposed Solution:**\n- Protos should have their own prefix (e.g., `proto-`, `mol-`, or `tpl-`)\n- Could be a separate database/storage for the proto library\n- Or a convention where proto IDs are generated differently\n\n**Alternatives:**\n1. Separate proto database with `proto-` prefix\n2. Special ID format for protos (e.g., `bd:proto:release`)\n3. Visual indicator in bd list/show output (already have labels, but not enough)\n\n**Current workaround:** Label with `template` and `molecule`, but IDs still look like regular issues.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-24T16:30:28.677791-08:00","updated_at":"2025-12-24T16:45:24.862627-08:00","deleted_at":"2025-12-24T16:45:24.862627-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"feature"} {"id":"bd-h807","title":"Cross-project dependency support","description":"Enable tracking dependencies across project boundaries.\n\n## Mechanism\n- Producer: `bd ship \u003ccapability\u003e` adds `provides:\u003ccapability\u003e` label\n- Consumer: `blocked_by: external:\u003cproject\u003e:\u003ccapability\u003e`\n- Resolution: `bd ready` checks external deps via config\n\n## Design Doc\nSee: gastown/docs/cross-project-deps.md\n\n## Children\n- bd-eijl: bd ship command\n- bd-om4a: external: prefix in blocked_by\n- bd-66w1: external_projects config\n- bd-zmmy: bd ready resolution","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-21T22:38:01.116241-08:00","updated_at":"2025-12-22T00:02:09.271076-08:00","closed_at":"2025-12-22T00:02:09.271076-08:00"} @@ -403,7 +403,7 @@ {"id":"bd-hhv3","title":"Test and document molecular chemistry commands","description":"## Context\n\nImplemented the molecular chemistry UX commands per the design docs:\n- gastown/mayor/rig/docs/molecular-chemistry.md\n- gastown/mayor/rig/docs/chemistry-design-changes.md\n\nCommit: cadf798b\n\n## New Commands to Test\n\n| Command | Purpose |\n|---------|---------|\n| `bd pour \u003cproto\u003e` | Instantiate proto as persistent mol |\n| `bd wisp create \u003cproto\u003e` | Instantiate proto as ephemeral wisp |\n| `bd hook [--agent]` | Inspect what's on an agent's hook |\n\n## Enhanced Commands to Test\n\n| Command | Changes |\n|---------|---------|\n| `bd mol spawn --pour` | New flag, `--persistent` deprecated |\n| `bd mol bond --pour` | Force liquid phase on wisp target |\n| `bd pin --for \u003cagent\u003e --start` | Chemistry workflow support |\n\n## Test Scenarios\n\n1. **bd pour**: Create persistent mol from a proto\n - Verify creates in .beads/ (not .beads-wisp/)\n - Verify variable substitution works\n - Verify --dry-run works\n\n2. **bd wisp create**: Create ephemeral wisp from proto\n - Verify creates in .beads-wisp/\n - Verify bd wisp list shows it\n - Verify bd mol squash works\n - Verify bd mol burn works\n\n3. **bd hook**: Inspect pinned work\n - Pin something, verify bd hook shows it\n - Test --agent flag\n - Test --json output\n\n4. **bd pin --for**: Assign work to agent\n - Verify sets pinned=true\n - Verify sets assignee\n - Verify --start sets status=in_progress\n\n5. **bd mol bond --pour**: Force liquid on wisp target\n - Bond a proto to a wisp with --pour\n - Verify spawned issues are in .beads/\n\n## Documentation\n\n- Update CLAUDE.md with new commands\n- Add examples to --help output (already done)\n- Consider adding to docs/CLI_REFERENCE.md\n\n## Code Review\n\n- Check for edge cases\n- Verify error messages are helpful\n- Ensure --json output is consistent","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-22T02:22:10.906646-08:00","updated_at":"2025-12-22T02:55:37.983703-08:00","closed_at":"2025-12-22T02:55:37.983703-08:00"} {"id":"bd-hj0s","title":"Add 'convoy' issue type with reactive completion","description":"Add convoy as a new issue type with reactive completion semantics.\n\nBehavior:\n- Convoy has list of tracked issues (via 'tracks' relation)\n- When all tracked issues close (including wontfix), convoy auto-closes\n- Supports cross-prefix tracking (convoy in hq-* tracks gt-*, bd-*)\n\nImplementation:\n- New type: convoy\n- Reactive completion trigger on tracked issue closure\n- Query support: 'bd list --type=convoy'\n\nRelated: hq-7h8jx (Convoy System epic in town beads)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-29T18:47:02.011011-08:00","created_by":"mayor","updated_at":"2025-12-30T15:44:43.361813-08:00","closed_at":"2025-12-30T00:05:13.515078-08:00","close_reason":"Implemented convoy type with reactive completion","dependencies":[{"issue_id":"bd-hj0s","depends_on_id":"bd-3roq","type":"blocks","created_at":"2025-12-29T18:47:10.59211-08:00","created_by":"daemon"}]} {"id":"bd-hkr6","title":"GH#518: Document bd setup command","description":"bd setup is undiscoverable. Add to README/docs. Currently only findable by grepping source. See GitHub issue #518.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:54.664668-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-hlsw","title":"Add sync resilience guardrails for forced pushes and prefix mismatches","description":"Beads can get into unrecoverable sync states when remote forces pushes occur (e.g., rebases) combined with prefix mismatches from multi-worker scenarios. Add detection, prevention, and auto-recovery features to handle this gracefully.","status":"closed","priority":2,"issue_type":"epic","assignee":"beads/polecats/topaz","created_at":"2025-12-14T10:40:14.872875259-07:00","updated_at":"2025-12-30T17:05:34.559059-08:00","closed_at":"2025-12-30T17:05:34.559059-08:00","close_reason":"Epic complete: All sync resilience guardrails implemented - auto-recovery mode (bd-hlsw.3) and sync branch integrity guards (bd-hlsw.4)"} +{"id":"bd-hlsw","title":"Add sync resilience guardrails for forced pushes and prefix mismatches","description":"Beads can get into unrecoverable sync states when remote forces pushes occur (e.g., rebases) combined with prefix mismatches from multi-worker scenarios. Add detection, prevention, and auto-recovery features to handle this gracefully.","status":"closed","priority":2,"issue_type":"epic","created_at":"2025-12-14T10:40:14.872875259-07:00","updated_at":"2025-12-30T18:12:30.963683-08:00","closed_at":"2025-12-30T17:05:34.559059-08:00","close_reason":"Epic complete: All sync resilience guardrails implemented - auto-recovery mode (bd-hlsw.3) and sync branch integrity guards (bd-hlsw.4)"} {"id":"bd-hlsw.3","title":"Auto-recovery mode (bd sync --auto-recover)","description":"Add bd sync --auto-recover flag that: detects problematic sync state, backs up .beads/issues.db with timestamp, rebuilds DB from JSONL atomically, verifies consistency, reports what was fixed. Provides safety valve when sync integrity fails.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-14T10:40:20.599836875-07:00","updated_at":"2025-12-30T15:44:43.352476-08:00","closed_at":"2025-12-30T07:02:42.636957-08:00","close_reason":"Implemented --auto-recover flag with detection, backup, rebuild, verify, and reporting. Added tests.","dependencies":[{"issue_id":"bd-hlsw.3","depends_on_id":"bd-hlsw","type":"parent-child","created_at":"2025-12-14T10:40:20.600435888-07:00","created_by":"daemon"}]} {"id":"bd-hlsw.4","title":"Sync branch integrity guards","description":"Track sync branch parent commit. If sync branch was force-pushed, warn user and require confirmation before proceeding. Add option to reset to remote if user accepts rebase. Prevents silent corruption from forced pushes.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-14T10:40:20.645402352-07:00","updated_at":"2025-12-30T17:05:23.464495-08:00","closed_at":"2025-12-30T17:05:23.464495-08:00","close_reason":"Implemented sync branch integrity guards: (1) Added force-push detection via stored remote SHA tracking, (2) Added user warning and confirmation prompt when force-push detected, (3) Added --accept-rebase flag for non-interactive reset to remote, (4) Added tests for new functionality","dependencies":[{"issue_id":"bd-hlsw.4","depends_on_id":"bd-hlsw","type":"parent-child","created_at":"2025-12-14T10:40:20.646425761-07:00","created_by":"daemon"}]} {"id":"bd-hlyr","title":"Merge: bd-m8ro","description":"branch: polecat/max\ntarget: main\nsource_issue: bd-m8ro\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-23T20:45:40.218445-08:00","updated_at":"2025-12-23T21:21:57.69886-08:00","closed_at":"2025-12-23T21:21:57.69886-08:00"} @@ -424,6 +424,7 @@ {"id":"bd-icnf","title":"Add bd mol run command (bond + assign + pin)","description":"bd mol run = bond + assign root to caller + pin to startup mail. This is the Gas Town integration point. When agent restarts, check startup mail, find pinned molecule root, query bd ready for next step. Makes molecules immortal.","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-12-20T23:52:17.462882-08:00","updated_at":"2025-12-21T00:07:25.803058-08:00","closed_at":"2025-12-21T00:07:25.803058-08:00","dependencies":[{"issue_id":"bd-icnf","depends_on_id":"bd-ffjt","type":"blocks","created_at":"2025-12-20T23:52:25.871742-08:00","created_by":"daemon"}]} {"id":"bd-ie7j","title":"bd repair: Add --json output flag","description":"bd repair lacks --json output for machine-readable results, unlike most other bd commands.\n\nAdd --json flag that outputs structured JSON with:\n- orphan counts by type\n- list of orphaned references\n- repair status (success/failure)\n- backup path","status":"closed","priority":4,"issue_type":"feature","created_at":"2025-12-29T12:48:12.62521-08:00","created_by":"stevey","updated_at":"2025-12-29T12:57:43.747348-08:00","closed_at":"2025-12-29T12:57:43.747348-08:00","close_reason":"Implemented in repair.go: added orphan detection for comments/events tables and --json output flag"} {"id":"bd-ieyy","title":"bd close --continue: auto-advance to next molecule step","description":"Add --continue flag to bd close for seamless molecule step transitions.\n\n## Usage\n\nbd close \u003cstep-id\u003e --continue [--no-auto]\n\n## Behavior\n\n1. Closes the specified step\n2. Finds next ready step in same molecule (sibling/child)\n3. By default, marks it in_progress (--no-auto to skip)\n4. Outputs the transition\n\n## Output\n\n[done] Closed gt-abc.3: Implement feature\n\nNext ready in molecule:\n gt-abc.4: Write tests\n\n[arrow] Marked in_progress (use --no-auto to skip)\n\n## If no next step\n\n[done] Closed gt-abc.6: Exit decision\n\nMolecule gt-abc complete! All steps closed.\nConsider: bd mol squash gt-abc --summary '...'\n\n## Key behaviors\n- Detects parent molecule from closed step\n- Finds next unblocked sibling\n- Auto-claims by default (propulsion principle)\n- Graceful handling when molecule is complete\n\n## Gas Town integration\n- gt-lz13: Update templates with nav workflow\n- gt-um6q: Update docs with nav workflow","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-12-22T17:03:44.238243-08:00","updated_at":"2025-12-22T17:36:31.937727-08:00","closed_at":"2025-12-22T17:36:31.937727-08:00"} +{"id":"bd-ifa0","title":"Merge: amber-1767146829144","description":"branch: polecat/amber-1767146829144\ntarget: main\nsource_issue: amber-1767146829144\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T18:11:33.875918-08:00","created_by":"beads/polecats/amber","updated_at":"2025-12-30T18:11:33.875918-08:00"} {"id":"bd-ifuw","title":"test hook pin fix","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-23T04:43:15.598698-08:00","updated_at":"2025-12-23T04:51:29.438139-08:00","deleted_at":"2025-12-23T04:51:29.438139-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} {"id":"bd-iic1","title":"Phase 2.2: Switch bdt storage to TOON format","description":"Currently bdt stores issues in JSONL format in issues.toon file. Phase 2.2 must implement actual TOON format storage - this is the fundamental goal of the bdtoon project.\n\n## Current State (Phase 2.1)\n- issues.toon stores JSONL (intermediate format)\n- --toon flag allows output in TOON format for LLM consumption\n- Problem: We're not actually using TOON as the fundamental storage format\n\n## Required Work (Phase 2.2)\n1. Switch issue file I/O to write TOON format instead of JSONL\n - Update cmd/bdt/storage.go to use EncodeTOON for writing\n - Update cmd/bdt/storage.go to decode TOON (currently decodes JSON)\n - Ensure round-trip: write TOON ā†’ read TOON ā†’ write TOON is byte-identical\n\n2. Update command implementations\n - cmd/bdt/create.go: Write newly created issues to TOON format\n - cmd/bdt/list.go: Read issues from TOON format\n - cmd/bdt/show.go: Read from TOON format\n - cmd/bdt/import.go: Convert imported JSONL to TOON\n - cmd/bdt/export.go: Export TOON to JSONL (for bd compatibility)\n\n3. Implement TOON parser that handles gotoon's encoder-only limitation\n - Since gotoon doesn't decode TOON, need custom TOONā†’JSON decoder\n - OR continue storing TOON but decoding via intermediate JSON conversion\n\n4. Git merge driver optimization\n - TOON is line-oriented, better for 3-way merges than binary formats\n - Configure git merge driver for .toon files\n\n5. Comprehensive testing\n - Round-trip tests: Issue ā†’ TOON ā†’ storage ā†’ read ā†’ Issue\n - Merge conflict resolution tests with TOON format\n - Large issue set performance tests\n\n## Success Criteria\n- issues.toon stores actual TOON format (not JSONL)\n- bdt list reads from TOON file\n- bdt create writes to TOON file\n- Round-trip: create issue ā†’ list ā†’ show returns identical data\n- All 65+ tests still passing\n- Performance comparable to JSONL storage","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T14:05:41.394964404-07:00","updated_at":"2025-12-19T14:37:17.879612634-07:00","closed_at":"2025-12-19T14:37:17.879612634-07:00"} {"id":"bd-in7","title":"Test message","description":"Hello world","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-17T23:16:13.184946-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} @@ -434,7 +435,7 @@ {"id":"bd-iq19","title":"Distill: promote ad-hoc epic to proto","description":"Extract a reusable proto from an existing ad-hoc epic.\n\nCOMMAND: bd mol distill \u003cepic-id\u003e [--as \u003cproto-name\u003e]\n\nBEHAVIOR:\n- Clone the epic and all children as a new proto\n- Set is_template=true on all cloned issues\n- Replace concrete values with {{variable}} placeholders (interactive or --var flags)\n- Add to proto catalog\n\nFLAGS:\n- --as NAME: Custom proto ID (default: proto-\u003cepic-id\u003e)\n- --var field=placeholder: Replace value with variable placeholder\n- --interactive: Prompt for each field that looks parameterizable\n- --dry-run: Preview the proto structure\n\nEXAMPLE:\n bd mol distill bd-o5xe --as proto-feature-workflow \\\n --var title=feature_name \\\n --var assignee=worker\n\nUSE CASES:\n- Team develops good workflow organically, wants to reuse it\n- Capture tribal knowledge as executable templates\n- Create starting point for similar future work\n\nThe reverse of spawn: instead of proto ā†’ molecule, it's molecule ā†’ proto.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-21T01:05:07.953538-08:00","updated_at":"2025-12-21T10:31:56.814246-08:00","closed_at":"2025-12-21T10:31:56.814246-08:00","dependencies":[{"issue_id":"bd-iq19","depends_on_id":"bd-o5xe","type":"parent-child","created_at":"2025-12-21T01:05:16.495774-08:00","created_by":"daemon"},{"issue_id":"bd-iq19","depends_on_id":"bd-rnnr","type":"blocks","created_at":"2025-12-21T01:05:16.560404-08:00","created_by":"daemon"}]} {"id":"bd-iq7n","title":"Audit and fix JSONL filename mismatches across all repo clones","description":"## Problem\n\nMultiple clones of repos are configured with different JSONL filenames (issues.jsonl vs beads.jsonl), causing:\n1. JSONL files to be resurrected after deletion (one clone pushes issues.jsonl, another pushes beads.jsonl)\n2. Agents unable to see issues filed by other agents after sync\n3. Merge conflicts and data inconsistencies\n\n## Root Cause\n\nWhen repos were \"bd doctored\" or initialized at different times, some got issues.jsonl (old default) and others got beads.jsonl (Beads repo specific). These clones push their respective files, creating duplicates.\n\n## Task\n\nScan all repo clones under ~/src/ (1-2 levels deep) and standardize their JSONL configuration.\n\n### Step 1: Find all beads-enabled repos\n\n```bash\n# Find all directories named 'beads' at levels 1-2 under ~/src/\nfind ~/src -maxdepth 2 -type d -name beads\n```\n\n### Step 2: For each repo found, check configuration\n\nFor each directory from Step 1, check:\n- Does `.beads/metadata.json` exist?\n- What is the `jsonl_export` value?\n- What JSONL files actually exist in `.beads/`?\n- Are there multiple JSONL files (problem!)?\n\n### Step 3: Create audit report\n\nGenerate a report showing:\n```\nRepo Path | Config | Actual Files | Status\n----------------------------------- | ------------- | ---------------------- | --------\n~/src/beads | beads.jsonl | beads.jsonl | OK\n~/src/dave/beads | issues.jsonl | issues.jsonl | MISMATCH\n~/src/emma/beads | issues.jsonl | issues.jsonl, beads.jsonl | DUPLICATE!\n```\n\n### Step 4: Determine canonical name for each repo\n\nFor repos that are the SAME git repository (check `git remote -v`):\n- Group them together\n- Determine which JSONL filename should be canonical (majority wins, or beads.jsonl for the beads repo itself)\n- List which clones need to be updated\n\n### Step 5: Generate fix script\n\nCreate a script that for each mismatched clone:\n1. Updates `.beads/metadata.json` to use the canonical name\n2. If JSONL file needs renaming: `git mv .beads/old.jsonl .beads/new.jsonl`\n3. Removes any duplicate JSONL files: `git rm .beads/duplicate.jsonl`\n4. Commits the change\n5. Syncs: `bd sync`\n\n### Expected Output\n\n1. Audit report showing all repos and their config status\n2. List of repos grouped by git remote (same repository)\n3. Fix script or manual instructions for standardizing each repo\n4. Verification that after fixes, all clones of the same repo use the same JSONL filename\n\n### Edge Cases\n\n- Handle repos without metadata.json (use default discovery)\n- Handle repos with no git remote (standalone/local)\n- Handle repos that are not git repositories\n- Don't modify repos with uncommitted changes (warn instead)\n\n### Success Criteria\n\n- All clones of the same git repository use the same JSONL filename\n- No duplicate JSONL files in any repo\n- All configurations documented in metadata.json\n- bd doctor passes on all repos","status":"tombstone","priority":0,"issue_type":"task","created_at":"2025-11-21T23:58:35.044762-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-ir5t","title":"Merge: quartz-1767106247671","description":"branch: polecat/quartz-1767106247671\ntarget: main\nsource_issue: quartz-1767106247671\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T07:02:08.919103-08:00","created_by":"beads/polecats/quartz","updated_at":"2025-12-30T15:44:43.349476-08:00","closed_at":"2025-12-30T10:27:23.069509-08:00"} -{"id":"bd-irah","title":"Add refs field for cross-references with relationship type","description":"The refs field enables rich relationships beyond parent/child and depends-on.\n\nStructure:\n refs: [{id: string, rel: string}]\n\nRelationship types:\n- until: active until target closes\n- caused_by: triggered by target\n- relates_to: general association\n- supersedes: replaces target\n- validates: approval relationship\n\nExample:\n refs:\n - id: gt-abc1\n rel: until\n - id: hq-xyz9\n rel: caused_by\n\nEnables:\n- bd show gt-abc1 --refs (what references this?)\n- Conditional state (muted UNTIL issue closes)\n- Audit trails (this event CAUSED_BY that issue)","status":"closed","priority":2,"issue_type":"feature","assignee":"beads/polecats/quartz","created_at":"2025-12-30T15:15:34.948913-08:00","created_by":"gastown/crew/max","updated_at":"2025-12-30T15:51:38.291217-08:00","closed_at":"2025-12-30T15:51:38.291217-08:00","close_reason":"Implemented refs feature: added until/caused-by/validates dependency types and --refs flag to bd show"} +{"id":"bd-irah","title":"Add refs field for cross-references with relationship type","description":"The refs field enables rich relationships beyond parent/child and depends-on.\n\nStructure:\n refs: [{id: string, rel: string}]\n\nRelationship types:\n- until: active until target closes\n- caused_by: triggered by target\n- relates_to: general association\n- supersedes: replaces target\n- validates: approval relationship\n\nExample:\n refs:\n - id: gt-abc1\n rel: until\n - id: hq-xyz9\n rel: caused_by\n\nEnables:\n- bd show gt-abc1 --refs (what references this?)\n- Conditional state (muted UNTIL issue closes)\n- Audit trails (this event CAUSED_BY that issue)","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-30T15:15:34.948913-08:00","created_by":"gastown/crew/max","updated_at":"2025-12-30T18:12:30.975264-08:00","closed_at":"2025-12-30T15:51:38.291217-08:00","close_reason":"Implemented refs feature: added until/caused-by/validates dependency types and --refs flag to bd show"} {"id":"bd-is6m","title":"Add gate checking to Deacon patrol loop","description":"Integrate gate checking into Deacon's patrol cycle.\n\n## Patrol Integration\n```go\nfunc (d *Deacon) checkGates(ctx context.Context) {\n gates, _ := d.store.ListOpenGates(ctx)\n \n for _, gate := range gates {\n // Check timeout\n if time.Since(gate.CreatedAt) \u003e gate.Timeout {\n d.notifyWaiters(gate, \"timeout\")\n d.closeGate(gate, \"timed out\")\n continue\n }\n \n // Check condition\n if d.checkCondition(gate.AwaitType, gate.AwaitID) {\n d.notifyWaiters(gate, \"cleared\")\n d.closeGate(gate, \"condition met\")\n }\n }\n}\n```\n\n## Note\nThis task is in Gas Town (gt), not beads. May need to be moved there.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T11:44:36.839709-08:00","updated_at":"2025-12-23T12:19:44.204647-08:00","closed_at":"2025-12-23T12:19:44.204647-08:00","dependencies":[{"issue_id":"bd-is6m","depends_on_id":"bd-udsi","type":"parent-child","created_at":"2025-12-23T11:44:52.909253-08:00","created_by":"daemon"},{"issue_id":"bd-is6m","depends_on_id":"bd-u66e","type":"blocks","created_at":"2025-12-23T11:44:56.428084-08:00","created_by":"daemon"}]} {"id":"bd-it19","title":"Code smell: show.go is 1592 lines - needs splitting","description":"cmd/bd/show.go is 1592 lines mixing data fetching, transformation, output formatting, and thread reconstruction.\n\n**Problem:**\n- Too large to understand and maintain\n- Poor separation of concerns\n- Hard to test individual components\n\n**Acceptance Criteria:**\n- [ ] Extract formatting into show_formatter.go\n- [ ] Extract thread reconstruction into show_threads.go\n- [ ] Each file under 500 lines\n- [ ] No functionality changes\n- [ ] Tests pass","status":"closed","priority":2,"issue_type":"chore","created_at":"2025-12-28T18:59:00.865612-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-28T19:01:18.42196-08:00","closed_at":"2025-12-28T19:01:18.42196-08:00","dependencies":[{"issue_id":"bd-it19","depends_on_id":"bd-ox1o","type":"blocks","created_at":"2025-12-28T19:00:23.61907-08:00","created_by":"daemon"}]} {"id":"bd-iutu","title":"Test comment display","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T17:50:24.269413-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-27T17:53:39.950742-08:00","comments":[{"id":5,"issue_id":"bd-iutu","author":"beads/crew/dave","text":"This is a test comment","created_at":"2025-12-28T01:50:30Z"}],"deleted_at":"2025-12-27T17:53:39.950742-08:00","deleted_by":"beads/crew/dave","delete_reason":"manual delete","original_type":"task"} @@ -445,7 +446,7 @@ {"id":"bd-j3il","title":"Add bd reset command for clean slate restart","description":"Implement a command to reset beads to a clean starting state.\n\n**Context:** GitHub issue #479 - users sometimes get beads into an invalid state after updates, and there's no clean way to start fresh. The git backup/restore mechanism that protects against accidental deletion also makes it hard to intentionally reset.\n\n**Current workaround** (from maphew):\n```bash\nbd daemons killall\ngit rm .beads/*.jsonl\ngit commit -m 'remove old issues'\nrm .beads/*\nbd init\nbd onboard\n```\n\n**Desired:** A proper `bd reset` command that handles this cleanly and safely.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-13T08:41:34.956552+11:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} {"id":"bd-j4cr","title":"bd cook: waits_for field not preserved in cooked protos","description":"The `waits_for` field in formula steps is not preserved in the cooked proto.\n\n## Formula\n\n```yaml\n- id: aggregate\n title: Aggregate arm results\n needs: [survey-workers]\n waits_for: all-children\n description: |\n This is a **fanout gate**...\n```\n\n## Expected\n\nThe cooked proto step should have metadata indicating it's a gate:\n- Label: `gate:all-children` or\n- Field in issue metadata indicating wait behavior\n\n## Actual\n\nThe `waits_for` field is silently ignored. Only the description mentions 'fanout gate'.\n\n## Impact\n\nThe execution engine cannot determine which steps are gates that need to wait\nfor dynamically-bonded children. This breaks the Christmas Ornament pattern\nwhere aggregate steps must wait for all polecat-arm wisps to complete.\n\n## Related\n\nbd-hr39: needs field not converted to step dependencies","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-24T13:51:10.494565-08:00","updated_at":"2025-12-24T13:59:09.932552-08:00","closed_at":"2025-12-24T13:59:09.932552-08:00"} {"id":"bd-j6lr","title":"GH#402: Add --parent flag documentation to bd onboard","description":"bd onboard output is missing --parent flag for epic subtasks. Agents guess wrong syntax (--deps parent:). See GitHub issue #402.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:56.594829-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-jbqx","title":"Code smell: Repeated validation patterns could be centralized","description":"Similar validation patterns appear in multiple commands (create.go, show.go, update.go, etc.):\n- Check if resource exists\n- Check if resource is in valid state\n- Validate user input\n- Check permissions\n\n**Problem:**\n- Duplicated validation logic\n- Inconsistent validation between commands\n- Hard to add new validation rules consistently\n\n**Acceptance Criteria:**\n- [ ] Create internal/validation package\n- [ ] Centralize common validation logic\n- [ ] Use composition for validation chains\n- [ ] Update commands to use shared validators\n- [ ] Tests pass","status":"closed","priority":3,"issue_type":"chore","assignee":"beads/polecats/opal","created_at":"2025-12-28T19:00:03.171186-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-30T15:58:50.871474-08:00","closed_at":"2025-12-30T15:58:50.871474-08:00","close_reason":"Implemented composable validators in internal/validation/issue.go with Chain() composition, migrated show_unit_helpers.go to use centralized validators","dependencies":[{"issue_id":"bd-jbqx","depends_on_id":"bd-ox1o","type":"blocks","created_at":"2025-12-28T19:00:23.84458-08:00","created_by":"daemon"}]} +{"id":"bd-jbqx","title":"Code smell: Repeated validation patterns could be centralized","description":"Similar validation patterns appear in multiple commands (create.go, show.go, update.go, etc.):\n- Check if resource exists\n- Check if resource is in valid state\n- Validate user input\n- Check permissions\n\n**Problem:**\n- Duplicated validation logic\n- Inconsistent validation between commands\n- Hard to add new validation rules consistently\n\n**Acceptance Criteria:**\n- [ ] Create internal/validation package\n- [ ] Centralize common validation logic\n- [ ] Use composition for validation chains\n- [ ] Update commands to use shared validators\n- [ ] Tests pass","status":"closed","priority":3,"issue_type":"chore","created_at":"2025-12-28T19:00:03.171186-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-30T18:12:30.979965-08:00","closed_at":"2025-12-30T15:58:50.871474-08:00","close_reason":"Implemented composable validators in internal/validation/issue.go with Chain() composition, migrated show_unit_helpers.go to use centralized validators","dependencies":[{"issue_id":"bd-jbqx","depends_on_id":"bd-ox1o","type":"blocks","created_at":"2025-12-28T19:00:23.84458-08:00","created_by":"daemon"}]} {"id":"bd-jdz3","title":"Add pager support to bd list","description":"Add pager support following gh cli conventions:\n\nFlags:\n- --no-pager: disable pager for this command\n\nEnvironment variables:\n- BD_PAGER / PAGER: pager program (default: less)\n- BD_NO_PAGER: disable pager globally\n\nBehavior:\n- Auto-enable pager when output exceeds terminal height\n- Respect LESS env var for pager options\n- Disable pager when stdout is not a TTY (pipes/scripts)","notes":"## Implementation Plan\n\n### Dependencies\n```go\nimport \"github.com/muesli/termenv\" // or golang.org/x/term\n```\n\n### Code Changes\n\n1. **Add pager helper** (internal/ui/pager.go):\n```go\nfunc ToPager(content string) error {\n // Check BD_NO_PAGER or --no-pager\n if os.Getenv(\"BD_NO_PAGER\") \\!= \"\" {\n fmt.Print(content)\n return nil\n }\n \n // Get pager command\n pager := os.Getenv(\"BD_PAGER\")\n if pager == \"\" {\n pager = os.Getenv(\"PAGER\")\n }\n if pager == \"\" {\n pager = \"less\"\n }\n \n // Check if content exceeds terminal height\n // If not, just print directly\n \n // Pipe to pager\n cmd := exec.Command(pager)\n cmd.Stdin = strings.NewReader(content)\n cmd.Stdout = os.Stdout\n cmd.Stderr = os.Stderr\n return cmd.Run()\n}\n```\n\n2. **Add --no-pager flag** (cmd/bd/list.go init):\n```go\nlistCmd.Flags().Bool(\"no-pager\", false, \"Disable pager output\")\n```\n\n3. **Use pager in list output** (end of Run):\n```go\nif \\!noPager \u0026\u0026 isTerminal(os.Stdout) {\n ui.ToPager(output.String())\n} else {\n fmt.Print(output.String())\n}\n```\n\n### Environment Variables\n- `BD_PAGER`: pager program (overrides PAGER)\n- `BD_NO_PAGER`: set to any value to disable\n- `PAGER`: fallback pager\n- `LESS`: passed through for less options\n\n### Testing\n- `bd list` pipes to pager when output \u003e terminal height\n- `bd list --no-pager` prints directly\n- `BD_NO_PAGER=1 bd list` prints directly\n- `bd list | cat` auto-disables pager (not a TTY)","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-29T15:25:09.109258-08:00","created_by":"stevey","updated_at":"2025-12-30T15:44:43.356435-08:00","closed_at":"2025-12-30T00:41:45.168318-08:00","close_reason":"Merged via refinery"} {"id":"bd-jgxi","title":"Auto-migrate database on CLI version bump","description":"When CLI is upgraded (e.g., 0.24.0 ā†’ 0.24.1), database version becomes stale. Add auto-migration in PersistentPreRun or daemon startup. Check dbVersion != CLIVersion and run bd migrate automatically. Fixes recurring UX issue where bd doctor shows version mismatch after every CLI upgrade.","status":"tombstone","priority":0,"issue_type":"feature","created_at":"2025-11-21T23:16:09.004619-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","dependencies":[{"issue_id":"bd-jgxi","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:09.005513-08:00","created_by":"daemon"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} {"id":"bd-jjzz","title":"Merge: obsidian-1767106243818","description":"branch: polecat/obsidian-1767106243818\ntarget: main\nsource_issue: obsidian-1767106243818\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T07:00:26.328349-08:00","created_by":"beads/polecats/obsidian","updated_at":"2025-12-30T15:44:43.366109-08:00","closed_at":"2025-12-30T10:27:23.070855-08:00"} @@ -453,7 +454,7 @@ {"id":"bd-jsk7","title":"Agent beads: structured labels for filtering","description":"## Agent Beads Need Queryable Labels\n\nCurrently agent beads have role_type/rig in description text, not as labels. This breaks @group resolution in gt mail.\n\n## Current State\n```json\n{\n \"id\": \"gt-gastown-witness\",\n \"issue_type\": \"agent\",\n \"description\": \"...\\\\nrole_type: witness\\\\nrig: gastown\\\\n...\"\n}\n```\n\nCannot query: `bd list --type=agent --label=role_type:witness` returns nothing.\n\n## Required\nAgent bead creation should add labels:\n- `role_type:\u003ctype\u003e` (witness, refinery, crew, polecat, dog, mayor, deacon)\n- `rig:\u003crig\u003e` (gastown, beads, or \"town\" for town-level)\n\n## Where to Fix\ngt polecat/crew/agent creation commands should add labels.\n\n## Acceptance\n- New agent beads created with role_type/rig labels\n- @group patterns work in gt mail router","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-29T20:49:13.444793-08:00","created_by":"gastown/crew/joe","updated_at":"2025-12-29T20:58:04.67866-08:00","closed_at":"2025-12-29T20:58:04.67866-08:00","close_reason":"Duplicate of bd-g7eq"} {"id":"bd-jv4w","title":"Phase 1.2: Separate bdt executable - Initial structure","description":"Create minimal bdt command structure completely separate from bd. Must not share code, config, or database.\n\n## Subtasks\n1. Create cmd/bdt/ directory with main.go\n2. Implement bdt version, help, and status commands\n3. Configure separate database location: $HOME/.bdt/ (not $HOME/.beads/)\n4. Create separate issues file: issues.toon (not issues.jsonl)\n5. Update build system:\n - Makefile: Add bdt target\n - .goreleaser.yml: Add bdt binary config\n\n## Files to Create\n- cmd/bdt/main.go - Entry point\n- cmd/bdt/version.go - Version handling\n- cmd/bdt/help.go - Help text (separate from bd)\n\n## Success Criteria\n- `make build` produces both `bd` and `bdt` executables\n- `bdt version` shows distinct version output from bd\n- `bdt --help` shows distinct help text\n- bdt uses $HOME/.bdt/ directory (verify with `bdt info`)\n- bd and bdt completely isolated (no shared imports beyond stdlib)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T11:48:34.866877282-07:00","updated_at":"2025-12-19T12:59:11.389296015-07:00","closed_at":"2025-12-19T12:59:11.389296015-07:00"} {"id":"bd-jvu","title":"Add bd update --parent flag to change issue parent","description":"Allow changing an issue's parent with bd update --parent \u003cnew-parent-id\u003e. Useful for reorganizing tasks under different epics or moving issues between hierarchies. Should update the parent-child dependency relationship.","status":"tombstone","priority":3,"issue_type":"feature","created_at":"2025-12-17T22:24:07.274485-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} -{"id":"bd-jxp6","title":"Merge: jasper-1767142011373","description":"branch: polecat/jasper-1767142011373\ntarget: main\nsource_issue: jasper-1767142011373\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T16:57:20.349497-08:00","created_by":"beads/polecats/jasper","updated_at":"2025-12-30T16:57:20.349497-08:00"} +{"id":"bd-jxp6","title":"Merge: jasper-1767142011373","description":"branch: polecat/jasper-1767142011373\ntarget: main\nsource_issue: jasper-1767142011373\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T16:57:20.349497-08:00","created_by":"beads/polecats/jasper","updated_at":"2025-12-30T18:12:30.965618-08:00","closed_at":"2025-12-30T18:11:07.859316-08:00"} {"id":"bd-kblo","title":"bd prime should mention when beads is redirected","description":"## Problem\n\nAgents running in a redirected clone don't know they're sharing beads with other clones. This can cause confusion when molecules or issues seem to 'appear' or 'disappear'.\n\n## Proposed Solution\n\nWhen `bd prime` runs and detects a redirect, include it in the output:\n\n```\nBeads: /Users/stevey/gt/beads/mayor/rig/.beads\n (redirected from crew/dave - you share issues with other clones)\n```\n\n## Why\n\nVisibility over magic. If agents can see the redirect, they can reason about it.\n\n## Related\n\n- bd where command (shows this on demand)\n- gt redirect following (ensures gt matches bd behavior)","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-27T21:15:55.026907-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-27T21:33:33.765635-08:00","closed_at":"2025-12-27T21:33:33.765635-08:00"} {"id":"bd-kff0","title":"Integrate detect-pollution into bd doctor","description":"## Task\nMove `bd detect-pollution` ā†’ `bd doctor --check=pollution`\n\n## Current state\n- detect-pollution already shows deprecation hint pointing to doctor\n- Doctor command exists with multiple checks\n\n## Implementation\n\n### 1. Update doctor.go\n- Add pollution check to the doctor checks\n- Add `--check=pollution` flag option\n- Integrate detect-pollution logic\n\n### 2. Update detect_pollution.go\n- Mark as hidden (deprecated)\n- Forward to doctor --check=pollution\n- Keep for one release cycle\n\n### 3. Update docs\n- Remove detect-pollution from any command lists\n- Update doctor docs to include pollution check\n\n## Files to modify\n- cmd/bd/doctor.go\n- cmd/bd/detect_pollution.go\n","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-27T15:11:10.46326-08:00","created_by":"mayor","updated_at":"2025-12-27T16:04:58.471341-08:00","closed_at":"2025-12-27T16:04:58.471341-08:00"} {"id":"bd-kkka","title":"Dead code: fetchAndRebaseInWorktree() marked DEPRECATED but still exists","description":"attached_args: Remove dead code fetchAndRebaseInWorktree\n\nThe function fetchAndRebaseInWorktree() in internal/syncbranch/worktree.go (lines 811-830) is marked as DEPRECATED with a comment:\n\n```go\n// fetchAndRebaseInWorktree is DEPRECATED - kept for reference only.\n// Use contentMergeRecovery instead to avoid tombstone resurrection.\n```\n\nSince contentMergeRecovery() is the replacement and is being used, this dead code should be removed to reduce maintenance burden.\n\nLocation: internal/syncbranch/worktree.go:811-830","status":"closed","priority":3,"issue_type":"chore","created_at":"2025-12-28T15:32:21.97865-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-28T16:41:36.721496-08:00","closed_at":"2025-12-28T16:41:36.721496-08:00","dependencies":[{"issue_id":"bd-kkka","depends_on_id":"bd-784c","type":"parent-child","created_at":"2025-12-28T15:38:04.241483-08:00","created_by":"daemon"}]} @@ -463,7 +464,7 @@ {"id":"bd-kpy","title":"Sync race: rebase-based divergence recovery resurrects tombstones","description":"## Problem\nWhen two repos sync simultaneously, tombstones can be resurrected:\n\n1. Repo A deletes issue (creates tombstone), pushes to sync branch\n2. Repo B (with 'closed' status) exports and tries to push\n3. Push fails (non-fast-forward)\n4. fetchAndRebaseInWorktree does git rebase\n5. Git rebase applies B's 'closed' patch on top of A's 'tombstone'\n6. TEXT-level rebase doesn't invoke beads merge driver\n7. 'closed' overwrites 'tombstone' = resurrection\n\n## Root Cause\nCommitToSyncBranch uses git rebase for divergence recovery, but rebase is text-level, not content-level. The proper content-level merge in PullFromSyncBranch handles tombstones correctly, but it runs AFTER the problematic push.\n\n## Proposed Fix\nOption 1: Don't push in CommitToSyncBranch - let PullFromSyncBranch handle merge+push\nOption 2: Replace git rebase with content-level merge in fetchAndRebaseInWorktree\nOption 3: Reorder sync steps: Export ā†’ Pull/Merge ā†’ Commit ā†’ Push\n\n## Workaround Applied\nExcluded tombstones from orphan detection warnings (commit 1e97d9cc).\n\nSee also: bd-3852 (Add orphan detection migration)","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-17T23:29:33.049272-08:00","updated_at":"2025-12-24T22:41:09.184574-08:00","closed_at":"2025-12-24T22:41:09.184574-08:00"} {"id":"bd-kqo1","title":"Show pin indicator in bd list output","description":"Add a visual indicator (e.g., pin emoji or [P] marker) for pinned issues in bd list output so users can easily identify them.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-18T23:33:47.402549-08:00","updated_at":"2025-12-21T11:30:27.272768-08:00","closed_at":"2025-12-21T11:30:27.272768-08:00","dependencies":[{"issue_id":"bd-kqo1","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.771791-08:00","created_by":"daemon"},{"issue_id":"bd-kqo1","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.985271-08:00","created_by":"daemon"}]} {"id":"bd-kqw0","title":"Update local installation","description":"Run install script or brew upgrade to get new version locally: curl -fsSL .../install.sh | bash","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-21T13:52:33.066452-08:00","updated_at":"2025-12-21T13:53:49.656073-08:00","deleted_at":"2025-12-21T13:53:49.656073-08:00","deleted_by":"stevey","delete_reason":"manual delete","original_type":"task"} -{"id":"bd-kvwf","title":"Merge: quartz-1767142008267","description":"branch: polecat/quartz-1767142008267\ntarget: main\nsource_issue: quartz-1767142008267\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T16:50:35.727954-08:00","created_by":"beads/polecats/quartz","updated_at":"2025-12-30T16:50:35.727954-08:00"} +{"id":"bd-kvwf","title":"Merge: quartz-1767142008267","description":"branch: polecat/quartz-1767142008267\ntarget: main\nsource_issue: quartz-1767142008267\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T16:50:35.727954-08:00","created_by":"beads/polecats/quartz","updated_at":"2025-12-30T18:12:30.969887-08:00","closed_at":"2025-12-30T18:11:07.891839-08:00"} {"id":"bd-kwjh","title":"Wisp storage: ephemeral molecule tracking","description":"Implement ephemeral molecule storage for patrol cycles.\n\n## Architecture\n\nWisps are ephemeral molecules stored in `.beads-wisps/` (gitignored).\nWhen squashed, they create digests in permanent `.beads/`.\n\n**Storage is per-rig, not per-role**: Witness and Refinery share mayor/rig's \n`.beads-wisps/` since they execute from that context.\n\n## Design Doc\nSee: gastown/mayor/rig/docs/wisp-architecture.md\n\n## Key Requirements\n\n1. **Ephemeral storage**: `.beads-wisps/` directory, gitignored\n2. **Bond with --wisp**: Creates in wisps instead of permanent\n3. **Squash**: Deletes wisp, creates digest in permanent beads\n4. **Burn**: Deletes wisp, no digest\n5. **Wisp commands**: `bd wisp list`, `bd wisp gc`\n\n## Storage Locations\n\n| Context | Location |\n|---------|----------|\n| Rig (Deacon, Witness, Refinery) | mayor/rig/.beads-wisps/ |\n| Polecat (if used) | polecats/\u003cname\u003e/.beads-wisps/ |\n\n## Children (to be created)\n- bd mol bond --wisp flag\n- .beads-wisps/ storage backend\n- bd mol squash handles wisp to permanent\n- bd wisp list command\n- bd wisp gc command (orphan cleanup)","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-21T23:34:47.188806-08:00","updated_at":"2025-12-22T01:12:53.965768-08:00","closed_at":"2025-12-22T01:12:53.965768-08:00"} {"id":"bd-kwjh.1","title":".beads-ephemeral/ storage backend","description":"Implement ephemeral storage layer for wisps.\n\n## Requirements\n- New storage location: .beads-ephemeral/issues.jsonl (sibling to .beads/)\n- Gitignored by default (add to .beads/.gitignore)\n- Same JSONL format as regular beads\n- Config option: ephemeral.directory (relative path)\n- ephemeral.enabled config flag\n\n## Storage Behavior\n- Ephemeral issues have `ephemeral: true` field\n- No sync to remote (local only)\n- No daemon tracking needed (transient)\n\n## Implementation\n- Add EphemeralStore in storage package\n- Initialize on demand when --ephemeral flag used\n- Share Issue struct, just different storage path","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-22T00:06:46.706026-08:00","updated_at":"2025-12-22T00:08:26.009875-08:00","dependencies":[{"issue_id":"bd-kwjh.1","depends_on_id":"bd-kwjh","type":"parent-child","created_at":"2025-12-22T00:06:46.706461-08:00","created_by":"daemon"}],"deleted_at":"2025-12-22T00:08:26.009875-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} {"id":"bd-kwjh.2","title":".beads-ephemeral/ storage backend","description":"Implement ephemeral storage layer for wisps.\n\n## Requirements\n- New storage location: .beads-ephemeral/issues.jsonl (sibling to .beads/)\n- Gitignored by default (add to .beads/.gitignore)\n- Same JSONL format as regular beads\n- Config option: ephemeral.directory (relative path)\n- ephemeral.enabled config flag\n\n## Storage Behavior\n- Ephemeral issues have ephemeral: true field\n- No sync to remote (local only)\n- No daemon tracking needed (transient)\n\n## Implementation\n- Add EphemeralStore in storage package\n- Initialize on demand when --ephemeral flag used\n- Share Issue struct, just different storage path","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-22T00:06:56.248345-08:00","updated_at":"2025-12-22T00:13:51.281427-08:00","closed_at":"2025-12-22T00:13:51.281427-08:00","dependencies":[{"issue_id":"bd-kwjh.2","depends_on_id":"bd-kwjh","type":"parent-child","created_at":"2025-12-22T00:06:56.248725-08:00","created_by":"daemon"}]} @@ -493,7 +494,7 @@ {"id":"bd-l7y3","title":"bd mol bond --pour should set Wisp=false","description":"In mol_bond.go bondProtoMol(), opts.Wisp is hardcoded to true (line 392). This ignores the --pour flag. When user specifies --pour to make an issue persistent, the Wisp field should be false so the issue is not marked for bulk deletion.\n\nCurrent behavior:\n- --pour flag correctly selects regular storage (not wisp storage)\n- But opts.Wisp=true means spawned issues are still marked for cleanup when closed\n\nExpected behavior:\n- --pour should set Wisp=false so persistent issues are not auto-cleaned\n\nComparison with mol_spawn.go (line 204):\n wisp := !pour // Correctly respects --pour flag\n result, err := spawnMolecule(ctx, store, subgraph, vars, assignee, actor, wisp)\n\nFix: Pass pour flag to bondProtoMol and set opts.Wisp = !pour","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-23T15:15:00.562346-08:00","updated_at":"2025-12-23T15:25:22.53144-08:00","closed_at":"2025-12-23T15:25:22.53144-08:00"} {"id":"bd-ldb0","title":"Rename ephemeral ā†’ wisp throughout codebase","description":"## The Change\n\nRename 'ephemeral' to 'wisp' throughout the beads codebase.\n\n## Why\n\n**Ephemeral** is:\n- 4 syllables (too long)\n- Greek/academic (doesn't match bond/burn/squash)\n- Overused in tech (K8s, networking, storage)\n- Passive/descriptive\n\n**Wisp** is:\n- 1 syllable (matches bond/burn/squash)\n- Evocative - you can SEE a wisp\n- Steam engine metaphor - Gas Town is engines, steam wisps rise and dissipate\n- Will-o'-the-wisp - transient spirits that guide then vanish\n- Unique - nobody else uses it\n\n## The Steam Engine Metaphor\n\n```\nEngine does work ā†’ generates steam\nSteam wisps rise ā†’ execution trace\nSteam condenses ā†’ digest (distillate)\nSteam dissipates ā†’ cleaned up (burned)\n```\n\n## Full Vocabulary\n\n| Term | Meaning |\n|------|---------|\n| bond | Attach proto to work (creates wisps) |\n| wisp | Temporary execution step |\n| squash | Condense wisps into digest |\n| burn | Destroy wisps without record |\n| digest | Permanent condensed record |\n\n## Changes Required\n\n### Code\n- `Ephemeral bool` ā†’ `Wisp bool` in types/issue.go\n- `--ephemeral` flag ā†’ remove (wisp is default)\n- `--persistent` flag ā†’ keep as opt-out\n- `bd cleanup --ephemeral` ā†’ `bd cleanup --wisps`\n- Update all references in mol_*.go files\n\n### Docs\n- Update all documentation\n- Update CLAUDE.md examples\n- Update CLI help text\n\n### Database Migration\n- Add migration to rename field (or keep internal name, just change API)\n\n## Example Usage After\n\n```bash\nbd mol bond mol-polecat-work # Creates wisps (default)\nbd mol bond mol-xxx --persistent # Creates permanent issues\nbd mol squash bd-xxx # Condenses wisps ā†’ digest\nbd cleanup --wisps # Clean old wisps\nbd list --wisps # Show wisp issues\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-21T14:44:41.576068-08:00","updated_at":"2025-12-22T00:32:31.153738-08:00","closed_at":"2025-12-22T00:32:31.153738-08:00"} {"id":"bd-lfak","title":"bd preflight: PR readiness checks for contributors","description":"## Vision\n\nEncode project-specific institutional knowledge into executable checks. CONTRIBUTING.md is documentation that's read once and forgotten; `bd preflight` is documentation that runs at exactly the right moment.\n\n## Problem Statement\n\nContributors face a \"last mile\" problem - they do the work but stumble on project-specific gotchas at PR time:\n- Nix vendorHash gets stale when go.sum changes\n- Beads artifacts leak into PRs (see bd-umbf for namespace solution)\n- Version mismatches between version.go and default.nix\n- Tests/lint not run locally before pushing\n- Other project-specific checks that only surface when CI fails\n\nThese are too obscure to remember, exist in docs nobody reads end-to-end, and waste CI round-trips.\n\n## Why beads?\n\nBeads already has a foothold in the contributor workflow. It knows:\n- Git state (staged files, branch, dirty status)\n- Project structure\n- The specific issue being worked on\n- Project-specific configuration\n\n## Proposed Interface\n\n### Tier 1: Checklist Mode (v1)\n\n $ bd preflight\n PR Readiness Checklist:\n\n [ ] Tests pass: go test -short ./...\n [ ] Lint passes: golangci-lint run ./...\n [ ] No beads pollution: check .beads/issues.jsonl diff\n [ ] Nix hash current: go.sum unchanged or vendorHash updated\n [ ] Version sync: version.go matches default.nix\n\n Run 'bd preflight --check' to validate automatically.\n\n### Tier 2: Check Mode (v2)\n\n $ bd preflight --check\n āœ“ Tests pass\n āœ“ Lint passes\n āš  Beads pollution: 3 issues in diff - are these project issues or personal?\n āœ— Nix hash stale: go.sum changed, vendorHash needs update\n Fix: sha256-KRR6dXzsSw8OmEHGBEVDBOoIgfoZ2p0541T9ayjGHlI=\n āœ“ Version sync\n\n 1 error, 1 warning. Run 'bd preflight --fix' to auto-fix where possible.\n\n### Tier 3: Fix Mode (v3)\n\n $ bd preflight --fix\n āœ“ Updated vendorHash in default.nix\n āš  Cannot auto-fix beads pollution - manual review needed\n\n## Checks to Implement\n\n| Check | Description | Auto-fixable |\n|-------|-------------|--------------|\n| tests | Run go test -short ./... | No |\n| lint | Run golangci-lint | Partial (gofmt) |\n| beads-pollution | Detect personal issues in diff | No (see bd-umbf) |\n| nix-hash | Detect stale vendorHash | Yes (if nix available) |\n| version-sync | version.go matches default.nix | Yes |\n| no-debug | No TODO/FIXME/console.log | Warn only |\n| clean-stage | No unintended files staged | Warn only |\n\n## Future: Configuration\n\nMake checks configurable per-project via .beads/preflight.yaml:\n\n preflight:\n checks:\n - name: tests\n run: go test -short ./...\n required: true\n - name: no-secrets\n pattern: \"**/*.env\"\n staged: deny\n - name: custom-check\n run: ./scripts/validate.sh\n\nThis lets any project using beads define their own preflight checks.\n\n## Implementation Phases\n\n### Phase 1: Static Checklist\n- Implement bd preflight with hardcoded checklist for beads\n- No execution, just prints what to check\n- Update CONTRIBUTING.md to reference it\n\n### Phase 2: Automated Checks\n- Implement bd preflight --check\n- Run tests, lint, detect stale hashes\n- Clear pass/fail/warn output\n\n### Phase 3: Auto-fix\n- Implement bd preflight --fix\n- Fix vendorHash, version sync\n- Integrate with bd-umbf solution for pollution\n\n### Phase 4: Configuration\n- .beads/preflight.yaml support\n- Make it useful for other projects using beads\n- Plugin/hook system for custom checks\n\n## Dependencies\n\n- bd-umbf: Namespace isolation for beads pollution (blocking for full solution)\n\n## Success Metrics\n\n- Fewer CI failures on first PR push\n- Reduced \"fix nix hash\" commits\n- Contributors report preflight caught issues before CI","status":"open","priority":2,"issue_type":"epic","created_at":"2025-12-13T18:01:39.587078-08:00","updated_at":"2025-12-13T18:01:39.587078-08:00","dependencies":[{"issue_id":"bd-lfak","depends_on_id":"bd-umbf","type":"blocks","created_at":"2025-12-13T18:01:46.059901-08:00","created_by":"daemon"}]} -{"id":"bd-lfak.1","title":"Scaffold bd preflight command with checklist output","status":"hooked","priority":2,"issue_type":"task","assignee":"beads/polecats/amber","created_at":"2025-12-30T18:06:29.297254-08:00","created_by":"mayor","updated_at":"2025-12-30T18:07:10.642783-08:00","dependencies":[{"issue_id":"bd-lfak.1","depends_on_id":"bd-lfak","type":"parent-child","created_at":"2025-12-30T18:06:29.297783-08:00","created_by":"mayor"}]} +{"id":"bd-lfak.1","title":"Scaffold bd preflight command with checklist output","status":"closed","priority":2,"issue_type":"task","assignee":"beads/polecats/amber","created_at":"2025-12-30T18:06:29.297254-08:00","created_by":"mayor","updated_at":"2025-12-30T18:11:15.884294-08:00","closed_at":"2025-12-30T18:11:15.884294-08:00","close_reason":"Implemented static checklist output. Command now shows PR readiness checks. --check and --fix flags documented for future phases.","dependencies":[{"issue_id":"bd-lfak.1","depends_on_id":"bd-lfak","type":"parent-child","created_at":"2025-12-30T18:06:29.297783-08:00","created_by":"mayor"}]} {"id":"bd-lfak.2","title":"Implement --check flag with test runner","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-30T18:06:30.419315-08:00","created_by":"mayor","updated_at":"2025-12-30T18:06:30.419315-08:00","dependencies":[{"issue_id":"bd-lfak.2","depends_on_id":"bd-lfak","type":"parent-child","created_at":"2025-12-30T18:06:30.419875-08:00","created_by":"mayor"},{"issue_id":"bd-lfak.2","depends_on_id":"bd-lfak.1","type":"blocks","created_at":"2025-12-30T18:06:48.582603-08:00","created_by":"mayor"}]} {"id":"bd-lfak.3","title":"Implement lint check (golangci-lint)","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-30T18:06:31.445431-08:00","created_by":"mayor","updated_at":"2025-12-30T18:06:31.445431-08:00","dependencies":[{"issue_id":"bd-lfak.3","depends_on_id":"bd-lfak","type":"parent-child","created_at":"2025-12-30T18:06:31.447094-08:00","created_by":"mayor"},{"issue_id":"bd-lfak.3","depends_on_id":"bd-lfak.1","type":"blocks","created_at":"2025-12-30T18:06:48.602793-08:00","created_by":"mayor"}]} {"id":"bd-lfak.4","title":"Implement nix-hash staleness detection","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-30T18:06:32.318167-08:00","created_by":"mayor","updated_at":"2025-12-30T18:06:32.318167-08:00","dependencies":[{"issue_id":"bd-lfak.4","depends_on_id":"bd-lfak","type":"parent-child","created_at":"2025-12-30T18:06:32.31998-08:00","created_by":"mayor"},{"issue_id":"bd-lfak.4","depends_on_id":"bd-lfak.1","type":"blocks","created_at":"2025-12-30T18:06:48.621655-08:00","created_by":"mayor"}]} @@ -502,13 +503,13 @@ {"id":"bd-likt","title":"Add daemon RPC support for gate commands","description":"Add daemon RPC support for gate commands.\n\n## Current State\nGate commands require --no-daemon flag because they use direct SQLite access:\n- Gate create needs to write await_type, await_id, timeout_ns, waiters fields\n- Gate wait needs to update waiters JSON array\n- Daemon RPC doesnt have methods for these operations\n\n## Implementation\n\n### 1. Add RPC methods to internal/rpc/protocol.go\n\n```go\n// Gate operations\ntype GateCreateArgs struct {\n Title string \\`json:\"title\"\\`\n AwaitType string \\`json:\"await_type\"\\`\n AwaitID string \\`json:\"await_id\"\\`\n Timeout time.Duration \\`json:\"timeout\"\\`\n Waiters []string \\`json:\"waiters\"\\`\n}\n\ntype GateCreateResult struct {\n Issue *types.Issue \\`json:\"issue\"\\`\n}\n\ntype GateListArgs struct {\n All bool \\`json:\"all\"\\` // Include closed gates\n}\n\ntype GateListResult struct {\n Gates []*types.Issue \\`json:\"gates\"\\`\n}\n\ntype GateWaitArgs struct {\n GateID string \\`json:\"gate_id\"\\`\n Waiters []string \\`json:\"waiters\"\\` // Additional waiters to add\n}\n\ntype GateWaitResult struct {\n Gate *types.Issue \\`json:\"gate\"\\`\n AddedCount int \\`json:\"added_count\"\\`\n}\n```\n\n### 2. Add handler methods to internal/daemon/rpc_handler.go\n\n```go\nfunc (h *RPCHandler) GateCreate(ctx context.Context, args *rpc.GateCreateArgs) (*rpc.GateCreateResult, error) {\n now := time.Now()\n gate := \u0026types.Issue{\n Title: args.Title,\n IssueType: types.TypeGate,\n Status: types.StatusOpen,\n Priority: 1,\n Assignee: \"deacon/\",\n Wisp: true,\n AwaitType: args.AwaitType,\n AwaitID: args.AwaitID,\n Timeout: args.Timeout,\n Waiters: args.Waiters,\n CreatedAt: now,\n UpdatedAt: now,\n }\n gate.ContentHash = gate.ComputeContentHash()\n \n if err := h.store.CreateIssue(ctx, gate, h.actor); err != nil {\n return nil, err\n }\n \n return \u0026rpc.GateCreateResult{Issue: gate}, nil\n}\n\nfunc (h *RPCHandler) GateList(ctx context.Context, args *rpc.GateListArgs) (*rpc.GateListResult, error) {\n gateType := types.TypeGate\n filter := types.IssueFilter{IssueType: \u0026gateType}\n if !args.All {\n openStatus := types.StatusOpen\n filter.Status = \u0026openStatus\n }\n \n gates, err := h.store.SearchIssues(ctx, \"\", filter)\n if err != nil {\n return nil, err\n }\n \n return \u0026rpc.GateListResult{Gates: gates}, nil\n}\n\nfunc (h *RPCHandler) GateWait(ctx context.Context, args *rpc.GateWaitArgs) (*rpc.GateWaitResult, error) {\n gate, err := h.store.GetIssue(ctx, args.GateID)\n if err != nil {\n return nil, err\n }\n if gate.IssueType != types.TypeGate {\n return nil, fmt.Errorf(\"%s is not a gate\", args.GateID)\n }\n \n // Merge waiters (dedupe)\n waiterSet := make(map[string]bool)\n for _, w := range gate.Waiters {\n waiterSet[w] = true\n }\n added := 0\n for _, w := range args.Waiters {\n if !waiterSet[w] {\n gate.Waiters = append(gate.Waiters, w)\n waiterSet[w] = true\n added++\n }\n }\n \n if added \u003e 0 {\n // Update via store\n updates := map[string]interface{}{\n \"waiters\": gate.Waiters,\n }\n if err := h.store.UpdateIssue(ctx, args.GateID, updates, h.actor); err != nil {\n return nil, err\n }\n }\n \n return \u0026rpc.GateWaitResult{Gate: gate, AddedCount: added}, nil\n}\n```\n\n### 3. Register methods in daemon\n\nIn internal/daemon/server.go, register the new methods:\n```go\nrpc.RegisterMethod(\"gate.create\", h.GateCreate)\nrpc.RegisterMethod(\"gate.list\", h.GateList)\nrpc.RegisterMethod(\"gate.wait\", h.GateWait)\n```\n\n### 4. Add client methods to internal/rpc/client.go\n\n```go\nfunc (c *Client) GateCreate(ctx context.Context, args *GateCreateArgs) (*GateCreateResult, error) {\n var result GateCreateResult\n err := c.Call(ctx, \"gate.create\", args, \u0026result)\n return \u0026result, err\n}\n\nfunc (c *Client) GateList(ctx context.Context, args *GateListArgs) (*GateListResult, error) {\n var result GateListResult\n err := c.Call(ctx, \"gate.list\", args, \u0026result)\n return \u0026result, err\n}\n\nfunc (c *Client) GateWait(ctx context.Context, args *GateWaitArgs) (*GateWaitResult, error) {\n var result GateWaitResult\n err := c.Call(ctx, \"gate.wait\", args, \u0026result)\n return \u0026result, err\n}\n```\n\n### 5. Update cmd/bd/gate.go to use daemon\n\n```go\n// In gateCreateCmd Run:\nif daemonClient != nil {\n result, err := daemonClient.GateCreate(ctx, \u0026rpc.GateCreateArgs{\n Title: title,\n AwaitType: awaitType,\n AwaitID: awaitID,\n Timeout: timeout,\n Waiters: notifyAddrs,\n })\n if err != nil {\n FatalError(\"gate create: %v\", err)\n }\n gate = result.Issue\n} else {\n // Existing direct store code\n}\n```\n\n## Files to Modify\n\n1. **internal/rpc/protocol.go** - Add Gate*Args/Result types\n2. **internal/daemon/rpc_handler.go** - Add handler methods\n3. **internal/daemon/server.go** - Register methods\n4. **internal/rpc/client.go** - Add client methods\n5. **cmd/bd/gate.go** - Use daemon client when available\n\n## Testing\n\n```bash\n# Start daemon\nbd daemon start\n\n# Test via daemon (should work without --no-daemon)\nbd gate create --await timer:5m --notify beads/dave\nbd gate list\nbd gate wait \u003cid\u003e --notify beads/alice\n\n# Verify daemon handled it\nbd daemons logs . | grep gate\n```\n\n## Success Criteria\n- All gate commands work without --no-daemon\n- Same behavior in daemon vs direct mode\n- Waiters array updates correctly via RPC\n- Tests pass for RPC gate operations","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-23T12:13:25.778412-08:00","updated_at":"2025-12-23T13:45:58.398604-08:00","closed_at":"2025-12-23T13:45:58.398604-08:00","dependencies":[{"issue_id":"bd-likt","depends_on_id":"bd-udsi","type":"discovered-from","created_at":"2025-12-23T12:13:36.174822-08:00","created_by":"daemon"},{"issue_id":"bd-likt","depends_on_id":"bd-iz5t","type":"parent-child","created_at":"2025-12-23T12:44:07.891992-08:00","created_by":"daemon"}]} {"id":"bd-lk39","title":"Add composite index (issue_id, event_type) on events table","description":"GetCloseReason and GetCloseReasonsForIssues filter by both issue_id and event_type.\n\n**Query (queries.go:355-358):**\n```sql\nSELECT comment FROM events\nWHERE issue_id = ? AND event_type = ?\nORDER BY created_at DESC LIMIT 1\n```\n\n**Problem:** Currently uses idx_events_issue but must filter event_type in memory.\n\n**Solution:** Add migration:\n```sql\nCREATE INDEX IF NOT EXISTS idx_events_issue_type ON events(issue_id, event_type);\n```\n\n**Priority:** Low - events table is typically small relative to issues.","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-22T22:58:54.070587-08:00","updated_at":"2025-12-22T23:15:13.841988-08:00","closed_at":"2025-12-22T23:15:13.841988-08:00","dependencies":[{"issue_id":"bd-lk39","depends_on_id":"bd-h0we","type":"discovered-from","created_at":"2025-12-22T22:58:54.071286-08:00","created_by":"daemon"}]} {"id":"bd-ll2n","title":"Move relate/unrelate under dep command","description":"Make relate and unrelate subcommands of dep (dep relate, dep unrelate). They're dependency operations and belong there.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-28T12:59:10.379321-08:00","created_by":"stevey","updated_at":"2025-12-28T13:04:02.520266-08:00","closed_at":"2025-12-28T13:04:02.520266-08:00"} -{"id":"bd-llfl","title":"Improve test coverage for cmd/bd CLI (26.2% ā†’ 50%)","description":"The main CLI package (cmd/bd) has only 26.2% test coverage. CLI commands should have at least 50% coverage to ensure reliability.\n\nKey areas with low/no coverage:\n- daemon_autostart.go (multiple 0% functions)\n- compact.go (several 0% functions)\n- Various command handlers\n\nCurrent coverage: 26.2%\nTarget coverage: 50%","notes":"## Progress Update (2025-12-30 - Session 2)\n\n### Tests Added\nAdded 479 lines of new tests across 4 files:\n- cmd/bd/utils_unit_test.go (214 lines) - NEW\n - TestTruncateString, TestPluralize, TestFormatTimeAgo\n - TestContainsLabel, TestGetContributorsSorted, TestExtractIDSuffix \n - TestTruncate, TestTruncateDescription\n - TestShowCleanupDeprecationHint, TestClearAutoFlushState\n\n- cmd/bd/hooks_test.go (117 lines added)\n - TestFormatHookWarnings, TestIsRebaseInProgress, TestHasBeadsJSONL\n\n- cmd/bd/list_test.go (140 lines added)\n - TestFormatIssueLong, TestFormatIssueCompact\n\n- cmd/bd/version_tracking_test.go (8 lines)\n - Fixed flaky tests by setting BEADS_DIR env var\n\n### Coverage Results\n- Before: 21.6%\n- After: 22.0%\n- Delta: +0.4%\n\n### Remaining Work\nCoverage is still at 22% vs target 50%. The remaining 78% involves:\n1. Daemon/RPC operations (runDaemonLoop, tryAutoStartDaemon, etc.)\n2. Command handlers requiring database/daemon setup\n3. Git operations (runPreCommitHook, runPostMergeHook, etc.)\n\nTo reach 50%, would need:\n- Integration tests with mocked daemon (use -tags=integration)\n- scripttest tests for command handlers\n- More database-dependent tests\n\nCommit: 8c7d94d3","status":"hooked","priority":2,"issue_type":"task","assignee":"beads/polecats/opal","created_at":"2025-12-13T20:43:03.123341-08:00","updated_at":"2025-12-30T17:13:19.888243-08:00"} +{"id":"bd-llfl","title":"Improve test coverage for cmd/bd CLI (26.2% ā†’ 50%)","description":"The main CLI package (cmd/bd) has only 26.2% test coverage. CLI commands should have at least 50% coverage to ensure reliability.\n\nKey areas with low/no coverage:\n- daemon_autostart.go (multiple 0% functions)\n- compact.go (several 0% functions)\n- Various command handlers\n\nCurrent coverage: 26.2%\nTarget coverage: 50%","notes":"## Progress Update (2025-12-30 - Session 2)\n\n### Tests Added\nAdded 479 lines of new tests across 4 files:\n- cmd/bd/utils_unit_test.go (214 lines) - NEW\n - TestTruncateString, TestPluralize, TestFormatTimeAgo\n - TestContainsLabel, TestGetContributorsSorted, TestExtractIDSuffix \n - TestTruncate, TestTruncateDescription\n - TestShowCleanupDeprecationHint, TestClearAutoFlushState\n\n- cmd/bd/hooks_test.go (117 lines added)\n - TestFormatHookWarnings, TestIsRebaseInProgress, TestHasBeadsJSONL\n\n- cmd/bd/list_test.go (140 lines added)\n - TestFormatIssueLong, TestFormatIssueCompact\n\n- cmd/bd/version_tracking_test.go (8 lines)\n - Fixed flaky tests by setting BEADS_DIR env var\n\n### Coverage Results\n- Before: 21.6%\n- After: 22.0%\n- Delta: +0.4%\n\n### Remaining Work\nCoverage is still at 22% vs target 50%. The remaining 78% involves:\n1. Daemon/RPC operations (runDaemonLoop, tryAutoStartDaemon, etc.)\n2. Command handlers requiring database/daemon setup\n3. Git operations (runPreCommitHook, runPostMergeHook, etc.)\n\nTo reach 50%, would need:\n- Integration tests with mocked daemon (use -tags=integration)\n- scripttest tests for command handlers\n- More database-dependent tests\n\nCommit: 8c7d94d3","status":"hooked","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:03.123341-08:00","updated_at":"2025-12-30T18:12:30.981243-08:00"} {"id":"bd-lo4","title":"Test pinned issue","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-18T21:44:49.031385-08:00","updated_at":"2025-12-18T21:47:25.055109-08:00","deleted_at":"2025-12-18T21:47:25.055109-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} {"id":"bd-lrj8","title":"Technical debt: Scattered TODOs should be tracked as issues","description":"Multiple TODO comments exist in the codebase that should be tracked as proper issues:\n\n1. cmd/bd/migrate_hash_ids.go:24 - 'Consider integrating into bd doctor migration detection'\n2. cmd/bd/migrate_tombstones.go:72 - Same\n3. cmd/bd/migrate_sync.go:16 - Same\n4. cmd/bd/migrate_issues.go:15 - Same\n5. cmd/bd/create.go:164 - 'Switch to target repo for multi-repo support'\n6. cmd/bd/create.go:208 - 'Add RPC method to get config in daemon mode'\n7. cmd/bd/daemon_logger.go:131 - 'Remove this once all callers are updated'\n8. cmd/bd/mol_stale.go:67 - 'Add RPC endpoint for stale check'\n9. cmd/bd/sync_test.go:444 - 'Refactor to use direct import logic'\n10. cmd/bd/jira.go:633 - 'In a full implementation, fetch Jira issue and compare timestamps'\n11. internal/formula/types.go:170,174,179,186,210 - Multiple 'Not yet implemented' TODOs\n12. internal/importer/importer_test.go:1010 - 'Test hangs due to database deadlock'\n\nConsider:\n1. Running 'grep -r TODO' periodically to find new ones\n2. Adding a lint rule to discourage inline TODOs\n3. Converting each to a bd issue with proper tracking\n\nLocation: Various files across codebase","status":"closed","priority":4,"issue_type":"chore","created_at":"2025-12-28T15:32:57.125279-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-28T16:34:10.911155-08:00","closed_at":"2025-12-28T16:34:10.911155-08:00","dependencies":[{"issue_id":"bd-lrj8","depends_on_id":"bd-784c","type":"parent-child","created_at":"2025-12-28T15:38:04.33312-08:00","created_by":"daemon"}]} {"id":"bd-lsv4","title":"GH#444: Fix inconsistent status naming in_progress vs in-progress","description":"Documentation uses in-progress (hyphen) but code expects in_progress (underscore). Update all docs to use canonical in_progress. See GitHub issue #444.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:14.349425-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-luso","title":"Add agent identity to commit metadata for forensics","description":"## Problem\n\nWhen agents (polecats, crew workers) make commits on behalf of a human, the commit only shows:\n- **Author**: Human (e.g., Steve Yegge)\n- **Co-Authored-By**: Claude Opus 4.5 (generic)\n\nMissing from the audit trail:\n- Which agent instance performed the work\n- Whether it was a polecat (transient) or crew (persistent)\n- What rig/workspace it ran in\n\nExample from a recent release commit:\n```\nAuthor: Steve Yegge \u003csteve.yegge@gmail.com\u003e\nCo-Authored-By: Claude Opus 4.5 \u003cnoreply@anthropic.com\u003e\n```\n\nNo way to trace this back to the specific agent session that executed the release molecule.\n\n## Proposal\n\nAdd git trailers to commits made by Gas Town agents:\n\n```\nExecuted-By: beads/polecat/Nux-1766978911613\nRig: beads\nRole: polecat\n```\n\nOr for crew workers:\n```\nExecuted-By: beads/crew/emma\nRig: beads\nRole: crew\n```\n\n## Benefits\n\n1. **Forensics**: If a release goes wrong, trace back to the exact agent session\n2. **Audit**: Query commits by agent type (`git log --grep=\"Role: polecat\"`)\n3. **Debugging**: Correlate commits with handoff mail and session logs\n4. **Accountability**: Distinguish human-direct vs agent-mediated commits\n\n## Implementation\n\nCould be implemented via:\n- Claude Code hooks (UserPromptSubmit or pre-commit)\n- `gt` commit helper that injects trailers\n- CLAUDE.md instructions for agents to include trailers\n\n## Open Questions\n\n- Should molecule ID be included if work was part of a molecule?\n- Should session ID or other correlation data be included?\n- Privacy considerations for commit metadata?","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-29T13:33:53.591916-08:00","created_by":"beads/crew/emma","updated_at":"2025-12-29T21:26:41.103041-08:00","closed_at":"2025-12-29T21:26:41.103041-08:00","close_reason":"Implemented via prepare-commit-msg git hook that auto-injects agent identity trailers"} {"id":"bd-lw0x","title":"Fix bd sync race condition with daemon causing dirty working directory","description":"After bd sync completes with sync.branch mode, subsequent bd commands or daemon file watcher would see a hash mismatch and trigger auto-import, which then schedules re-export, dirtying the working directory.\n\n**Root cause:**\n1. bd sync exports JSONL with NEW content (hash H1)\n2. bd sync updates jsonl_content_hash = H1 in DB\n3. bd sync restores JSONL from HEAD (OLD content, hash H0)\n4. Now: file hash = H0, DB hash = H1 (MISMATCH)\n5. Daemon or next CLI command sees mismatch, imports from OLD JSONL\n6. Import triggers re-export ā†’ file is dirty\n\n**Fix:**\nAfter restoreBeadsDirFromBranch(), update jsonl_content_hash to match the restored file's hash. This ensures daemon and CLI see file hash = DB hash ā†’ no spurious import/export cycle.\n\nRelated: bd-c83r (multiple daemon prevention)","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-13T06:42:17.130839-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-lxzx","title":"Add close_reason to JSONL export format documentation","description":"PR #551 now persists close_reason to the database, but there's a question about whether this field should be exported to JSONL format.\n\n## Current State\n- close_reason is stored in issues.close_reason column\n- close_reason is also stored in events table (audit trail)\n- The JSONL export format may or may not include close_reason\n\n## Questions\n1. Should close_reason be exported to JSONL format?\n2. If yes, where should it go (root level or nested in events)?\n3. Should there be any special handling to avoid duplication?\n4. How should close_reason be handled during JSONL import?\n\n## Why This Matters\n- JSONL is the git-friendly sync format\n- Other beads instances import from JSONL\n- close_reason is meaningful data that should be preserved across clones\n\n## Suggested Action\n- Check if close_reason is currently exported in JSONL\n- If not, add it to the export schema\n- Document the field in JSONL format spec\n- Add tests for round-trip (export -\u003e import -\u003e verify close_reason)","status":"closed","priority":2,"issue_type":"task","assignee":"beads/polecats/garnet","created_at":"2025-12-14T14:25:17.414916-08:00","updated_at":"2025-12-30T17:03:27.56903-08:00","closed_at":"2025-12-30T17:03:27.56903-08:00","close_reason":"Documented close_reason in JSONL schema and added round-trip test","dependencies":[{"issue_id":"bd-lxzx","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:17.416131-08:00","created_by":"stevey"}]} +{"id":"bd-lxzx","title":"Add close_reason to JSONL export format documentation","description":"PR #551 now persists close_reason to the database, but there's a question about whether this field should be exported to JSONL format.\n\n## Current State\n- close_reason is stored in issues.close_reason column\n- close_reason is also stored in events table (audit trail)\n- The JSONL export format may or may not include close_reason\n\n## Questions\n1. Should close_reason be exported to JSONL format?\n2. If yes, where should it go (root level or nested in events)?\n3. Should there be any special handling to avoid duplication?\n4. How should close_reason be handled during JSONL import?\n\n## Why This Matters\n- JSONL is the git-friendly sync format\n- Other beads instances import from JSONL\n- close_reason is meaningful data that should be preserved across clones\n\n## Suggested Action\n- Check if close_reason is currently exported in JSONL\n- If not, add it to the export schema\n- Document the field in JSONL format spec\n- Add tests for round-trip (export -\u003e import -\u003e verify close_reason)","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:17.414916-08:00","updated_at":"2025-12-30T18:12:30.972954-08:00","closed_at":"2025-12-30T17:03:27.56903-08:00","close_reason":"Documented close_reason in JSONL schema and added round-trip test","dependencies":[{"issue_id":"bd-lxzx","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:17.416131-08:00","created_by":"stevey"}]} {"id":"bd-lz49","title":"Add gate fields: await_type, await_id, timeout, waiters","description":"Add gate-specific fields to the Issue type.\n\n## New Fields\n- await_type: string - Type of condition (gh:run, gh:pr, timer, human, mail)\n- await_id: string - Identifier for the condition\n- timeout: duration - Max time to wait before escalation\n- waiters: []string - Mail addresses to notify when gate clears\n\n## Implementation\n- Add fields to Issue struct in internal/types/types.go\n- Update SQLite schema for new columns\n- Add JSONL serialization/deserialization\n- Update import/export logic","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-23T11:44:32.720196-08:00","updated_at":"2025-12-23T12:00:03.837691-08:00","closed_at":"2025-12-23T12:00:03.837691-08:00","dependencies":[{"issue_id":"bd-lz49","depends_on_id":"bd-udsi","type":"parent-child","created_at":"2025-12-23T11:44:52.738823-08:00","created_by":"daemon"},{"issue_id":"bd-lz49","depends_on_id":"bd-2v0f","type":"blocks","created_at":"2025-12-23T11:44:56.269351-08:00","created_by":"daemon"}]} {"id":"bd-m0tl","title":"bd create -f crashes with nil pointer dereference","description":"GitHub issue #674. The markdown import feature crashes at markdown.go:338 because global variables (store, ctx, actor) aren't initialized when createIssuesFromMarkdown is called. The function uses globals set by cobra command framework but is being called before they're ready. Need to either initialize globals at start of function or pass them as parameters.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-21T14:35:14.813012-08:00","updated_at":"2025-12-21T15:41:14.600953-08:00","closed_at":"2025-12-21T15:41:14.600953-08:00"} {"id":"bd-m164","title":"Add 0.33.2 to versionChanges in info.go","description":"Add new entry at the TOP of versionChanges array in cmd/bd/info.go:\n\n```go\n{\n Version: \"0.33.2\",\n Date: \"2025-12-21\",\n Changes: []string{\n // Add notable changes here\n },\n},\n```\n\nCopy changes from CHANGELOG.md [Unreleased] section.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-21T16:10:13.761218-08:00","updated_at":"2025-12-21T17:29:31.791368-08:00","deleted_at":"2025-12-21T17:29:31.791368-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} @@ -588,7 +589,7 @@ {"id":"bd-mol-xxg","title":"Verify version consistency","description":"Confirm all versions match 0.99.0-test.\n\n```bash\ngrep 'Version = ' cmd/bd/version.go\njq -r '.version' .claude-plugin/plugin.json\njq -r '.version' npm-package/package.json\ngrep 'version = ' integrations/beads-mcp/pyproject.toml\n```\n\nAll should show 0.99.0-test.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T17:09:12.46579-08:00","updated_at":"2025-12-29T17:09:32.480437-08:00","deleted_at":"2025-12-29T17:09:32.480437-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-mol-yxv","title":"Update info.go versionChanges","description":"Add entry to versionChanges in cmd/bd/info.go.\n\nThis powers `bd info --whats-new` for agents.\n\n```go\n\"0.39.0\": {\n \"summary\": \"Brief description\",\n \"changes\": []string{\n \"Key change 1\",\n \"Key change 2\",\n },\n},\n```\n\nFocus on workflow-impacting changes agents need to know.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T19:34:09.557636-08:00","updated_at":"2025-12-28T01:24:39.212106-08:00","dependencies":[{"issue_id":"bd-mol-yxv","depends_on_id":"bd-mol-937","type":"blocks","created_at":"2025-12-27T19:34:09.594033-08:00","created_by":"beads/crew/dave"}],"deleted_at":"2025-12-28T01:24:39.212106-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} {"id":"bd-mol-z5v","title":"Update info.go versionChanges","description":"Add entry to versionChanges in cmd/bd/info.go.\n\nThis powers `bd info --whats-new` for agents.\n\n```go\n\"0.41.0\": {\n \"summary\": \"Brief description\",\n \"changes\": []string{\n \"Key change 1\",\n \"Key change 2\",\n },\n},\n```\n\nFocus on workflow-impacting changes agents need to know.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-29T16:29:32.299762-08:00","updated_at":"2025-12-29T17:02:15.202404-08:00","close_reason":"Added v0.41.0 to versionChanges","deleted_at":"2025-12-29T17:02:15.202404-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-mql4","title":"getLocalSyncBranch silently ignores YAML parse errors","description":"In autoimport.go:170-172, YAML parsing errors are silently ignored. If a user has malformed YAML in config.yaml, sync-branch will just silently be empty with no feedback.\n\nRecommendation: Add debug logging since this function is only called during auto-import, and debugging silent failures is painful.\n\nAdd: debug.Logf(\"Warning: failed to parse config.yaml: %v\", err)","status":"closed","priority":4,"issue_type":"task","assignee":"beads/polecats/quartz","created_at":"2025-12-07T02:03:44.217728-08:00","updated_at":"2025-12-30T16:50:13.838626-08:00","closed_at":"2025-12-30T16:50:13.838626-08:00","close_reason":"Added debug.Logf calls in getLocalSyncBranch and isNoDbModeConfigured to log YAML parse errors instead of silently ignoring them"} +{"id":"bd-mql4","title":"getLocalSyncBranch silently ignores YAML parse errors","description":"In autoimport.go:170-172, YAML parsing errors are silently ignored. If a user has malformed YAML in config.yaml, sync-branch will just silently be empty with no feedback.\n\nRecommendation: Add debug logging since this function is only called during auto-import, and debugging silent failures is painful.\n\nAdd: debug.Logf(\"Warning: failed to parse config.yaml: %v\", err)","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-07T02:03:44.217728-08:00","updated_at":"2025-12-30T18:12:30.967491-08:00","closed_at":"2025-12-30T16:50:13.838626-08:00","close_reason":"Added debug.Logf calls in getLocalSyncBranch and isNoDbModeConfigured to log YAML parse errors instead of silently ignoring them"} {"id":"bd-muw","title":"Add empty tasks validation in workflow create","description":"workflow.go:321 will panic if wf.Tasks is empty. Add validation that len(wf.Tasks) \u003e 0 before accessing wf.Tasks[0].","status":"tombstone","priority":3,"issue_type":"bug","created_at":"2025-12-17T22:23:00.75707-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-mv6h","title":"Add test coverage for external dep edge cases","description":"During code review of bd-zmmy, identified missing test coverage:\n\n1. RemoveDependency with external ref target (will fail - see bd-a3sj)\n2. GetBlockedIssues with mix of local and external blockers\n3. GetDependencyTree with external deps\n4. AddDependency cycle detection with external refs (should be skipped?)\n5. External dep resolution with WAL mode database\n6. External dep resolution when target project has no .beads directory\n7. External dep resolution with invalid external: format variations\n\nPriority 2 because bd-a3sj is a real bug that tests would catch.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-21T23:45:37.50093-08:00","updated_at":"2025-12-22T22:32:09.515096-08:00","closed_at":"2025-12-22T22:32:09.515096-08:00","dependencies":[{"issue_id":"bd-mv6h","depends_on_id":"bd-zmmy","type":"discovered-from","created_at":"2025-12-21T23:45:37.501495-08:00","created_by":"daemon"}]} {"id":"bd-mwl7","title":"Mol Mall: Formula marketplace using GitHub as backend","description":"Create a marketplace for sharing molecule formulas using GitHub repos as the hosting backend.\n\n## Why GitHub?\n\nGitHub solves multiple problems at once:\n- **Hosting**: Raw file URLs for formula.json\n- **Versioning**: Git tags (v1.0.0, v1.2.0)\n- **Auth**: GitHub tokens for private formulas\n- **Discovery**: GitHub search, topics, stars\n- **Collaboration**: PRs for contributions, issues for bugs\n- **Organizations**: Natural scoping (@anthropic/, @gastown/)\n\n## URL Scheme\n\n```bash\n# Direct GitHub URL\nbd mol install github.com/anthropics/mol-code-review\n\n# With version tag\nbd mol install github.com/anthropics/mol-code-review@v1.2.0\n\n# Shorthand (via registry lookup)\nbd mol install @anthropic/mol-code-review\n```\n\n## Architecture\n\n### Distributed Model (like Go modules)\nEach formula lives in its own repo:\n```\ngithub.com/anthropics/mol-code-review/\nā”œā”€ā”€ formula.json # The formula\nā”œā”€ā”€ README.md # Documentation\nā””ā”€ā”€ CHANGELOG.md # Version history\n```\n\n### Optional Registry (for discovery)\n```\ngithub.com/anthropics/mol-mall/\nā””ā”€ā”€ registry.json # Index pointing to formula repos\n```\n\n## Child Issues\n\n1. `bd mol export` - Proto ā†’ Formula file\n2. `bd mol promote` - Distilled proto ā†’ Catalog proto (one step)\n3. `bd mol install` - GitHub ā†’ Local proto\n4. `bd mol update` - Check for newer versions\n5. `bd mol search` - Find formulas (GitHub API)\n6. `bd mol publish` - Push formula to GitHub repo\n7. Formula versioning - Version field + git tag integration\n8. Installation tracking - .beads/installed.json\n\n## ID Namespace Design\n\n| Entity | ID Format | Example |\n|--------|-----------|---------|\n| Formula (GitHub) | `github.com/org/repo` | `github.com/anthropics/mol-code-review` |\n| Catalog proto (local) | `mol-name` | `mol-code-review` |\n| Distilled proto | `\u003cdb\u003e-proto-xxx` | `bd-proto-a7f` |\n| Poured instance | `\u003cdb\u003e-mol-xxx` | `gt-mol-b8c` |\n| Wisp instance | `\u003cdb\u003e-wisp-xxx` | `hq-wisp-d9e` |\n","status":"closed","priority":2,"issue_type":"epic","created_at":"2025-12-25T12:05:05.848017-08:00","updated_at":"2025-12-25T12:09:39.767832-08:00","closed_at":"2025-12-25T12:09:39.767832-08:00"} @@ -605,7 +606,7 @@ {"id":"bd-nim5","title":"Detect/prevent childā†’parent dependency anti-pattern","description":"## Problem\n\nWhen filing issues with dependencies, it's easy to fall into the \"temporal trap\":\n- Thinking \"Phase 1 comes before Phase 2\"\n- Writing `bd dep add phase1 phase2`\n- But that means \"phase1 depends on phase2\" (backwards!)\n\nA specific variant: children depending on their parent epic. This is ALWAYS wrong because:\n1. Parent-child relationship already captures the dependency (parent closes when children done)\n2. Childā†’parent dep creates a block: child can't start because parent is \"open\"\n3. Parent can't close because children aren't done\n4. Deadlock\n\n## Solution\n\n### 1. Prevent at creation (`bd dep add`)\n\nWhen user runs `bd dep add X Y`:\n- Check if X is a child of Y (X.id starts with Y.id + \".\")\n- If so, error: \"Cannot add dependency: X is already a child of Y. Children inherit dependency on parent completion via hierarchy.\"\n\n### 2. Detect in `bd doctor`\n\nAdd a check that finds all cases where:\n- Issue A depends on Issue B\n- A.id matches pattern B.id + \".*\" (A is child of B)\n\nReport as: \"Childā†’parent dependency detected (anti-pattern)\"\nOffer repair: \"Remove N backwards dependencies? [y/N]\"\n\n## Implementation\n\n- `dep_add.go`: Add parent-child check before adding dependency\n- `doctor.go`: Add backwards-dep detection to health checks\n","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-24T12:51:15.788796-08:00","updated_at":"2025-12-24T13:02:44.079093-08:00","closed_at":"2025-12-24T13:02:44.079093-08:00"} {"id":"bd-njrm","title":"Work on gt-8tmz.34: Expansion var overrides not implement...","description":"Work on gt-8tmz.34: Expansion var overrides not implemented. The ExpandRule.Vars field exists in internal/formula/types.go but is ignored during expansion in internal/formula/expand.go. Implement: 1) Pass rule.Vars to expandStep in ApplyExpansions, 2) Merge vars with formula defaults (rule.Vars wins), 3) Substitute vars in template placeholders, 4) Add test in expand_test.go. When done, commit and push to main.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-25T20:01:13.586558-08:00","updated_at":"2025-12-25T20:06:11.099142-08:00","closed_at":"2025-12-25T20:06:11.099142-08:00"} {"id":"bd-nkqx","title":"bd swarm validate command","description":"Add bd swarm validate to check epic structure for swarming.\n\n## Context\nBefore running a swarm, we need to validate the epic structure:\n- Are dependencies correct (not inverted)?\n- Are there orphaned issues?\n- Is the DAG well-formed?\n\nThe Ready Front model (not phases!) means dependencies define execution order.\nCommon mistake: 'Phase 1 before Phase 2' ā†’ inverted deps.\nCorrect thinking: 'Phase 2 needs Phase 1' ā†’ bd dep add phase2 phase1\n\n## Implementation\n1. New command: bd swarm validate \u003cepic-id\u003e\n2. Walk the dependency DAG from epic children\n3. Detect issues:\n - Root issues with no dependents (orphans?)\n - Leaf issues depending on nothing (missing deps?)\n - Cycles (impossible)\n - Disconnected subgraphs\n4. Report:\n - Ready fronts (waves of parallel work)\n - Estimated worker-sessions\n - Max parallelism\n - Warnings for potential issues\n\n## Reference\n~/gt/docs/swarm-architecture.md - 'The Ready Front Model' section\n\n## Acceptance\n- bd swarm validate \u003cepic\u003e runs\n- Reports ready fronts accurately\n- Warns about structural issues\n- Returns success/failure exit code","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-28T19:11:08.788203-08:00","created_by":"mayor","updated_at":"2025-12-28T19:34:57.218009-08:00","closed_at":"2025-12-28T19:34:57.218009-08:00"} -{"id":"bd-nl2","title":"No logging/debugging for tombstone resurrection events","description":"Per the design document bd-zvg Open Question 1: Should resurrection log a warning? Recommendation was Yes. Currently, when an expired tombstone loses to a live issue (resurrection), there is no logging or debugging output. This makes it hard to understand why an issue reappeared. Recommendation: Add optional debug logging when resurrection occurs, e.g., Issue bd-abc resurrected (tombstone expired). Files: internal/merge/merge.go:359-366, 371-378, 400-405, 410-415","status":"closed","priority":4,"issue_type":"feature","assignee":"beads/polecats/amber","created_at":"2025-12-05T16:36:52.27525-08:00","updated_at":"2025-12-30T15:57:06.707152-08:00","closed_at":"2025-12-30T15:57:06.707152-08:00","close_reason":"Implemented debug logging for tombstone resurrection events. Added debug parameter to Merge3WayWithTTL and all 4 resurrection code paths now log 'Issue \u003cid\u003e resurrected (tombstone expired)' when debug mode is enabled."} +{"id":"bd-nl2","title":"No logging/debugging for tombstone resurrection events","description":"Per the design document bd-zvg Open Question 1: Should resurrection log a warning? Recommendation was Yes. Currently, when an expired tombstone loses to a live issue (resurrection), there is no logging or debugging output. This makes it hard to understand why an issue reappeared. Recommendation: Add optional debug logging when resurrection occurs, e.g., Issue bd-abc resurrected (tombstone expired). Files: internal/merge/merge.go:359-366, 371-378, 400-405, 410-415","status":"closed","priority":4,"issue_type":"feature","created_at":"2025-12-05T16:36:52.27525-08:00","updated_at":"2025-12-30T18:12:30.964926-08:00","closed_at":"2025-12-30T15:57:06.707152-08:00","close_reason":"Implemented debug logging for tombstone resurrection events. Added debug parameter to Merge3WayWithTTL and all 4 resurrection code paths now log 'Issue \u003cid\u003e resurrected (tombstone expired)' when debug mode is enabled."} {"id":"bd-nlzv","title":"bd show --short flag for compact output","description":"## Request\nAdd a `--short` flag to `bd show` for compact, one-line output per issue.\n\n## Use Case\nWhen checking multiple issues quickly:\n```bash\nbd show bd-nkqx --short \u0026\u0026 bd show bd-oxgi --short\n```\n\nCurrently fails with \"unknown flag: --short\"\n\n## Expected Output\nSomething like:\n```\nbd-nkqx [closed] P1 task: Validate swarm schema design\nbd-oxgi [closed] P1 task: Add mol_type schema field to beads\n```\n\n## Format Suggestion\n`\u003cid\u003e [\u003cstatus\u003e] \u003cpriority\u003e \u003ctype\u003e: \u003ctitle\u003e`\n\nOptional: include blocker count if any, e.g. `(blocked by 2)`","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-28T21:26:18.955592-08:00","created_by":"mayor","updated_at":"2025-12-28T21:35:06.006865-08:00","closed_at":"2025-12-28T21:35:06.006865-08:00"} {"id":"bd-nmch","title":"Add EntityRef type for structured entity references","description":"Create EntityRef struct with Name, Platform, Org, ID fields. This is the foundation for HOP entity tracking. Can render as entity://hop/\u003cplatform\u003e/\u003corg\u003e/\u003cid\u003e when needed. Add to internal/types/types.go.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-22T17:53:25.104328-08:00","updated_at":"2025-12-22T17:58:00.014103-08:00","closed_at":"2025-12-22T17:58:00.014103-08:00","dependencies":[{"issue_id":"bd-nmch","depends_on_id":"bd-7pwh","type":"parent-child","created_at":"2025-12-22T17:53:43.325405-08:00","created_by":"daemon"}]} {"id":"bd-nppb","title":"Refinery Patrol","description":"Merge queue processor patrol loop with verification gates.","status":"tombstone","priority":2,"issue_type":"molecule","created_at":"2025-12-26T13:08:21.308272-08:00","updated_at":"2025-12-27T00:10:54.177947-08:00","deleted_at":"2025-12-27T00:10:54.177947-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"molecule"} @@ -620,7 +621,7 @@ {"id":"bd-o7ik","title":"Priority: refactor mol.go then bd squash","description":"Two tasks:\n\n1. bd-cnwx - Refactor mol.go (1200+ lines, split by subcommand)\n2. bd-2vh3 - Ephemeral cleanup (bd cleanup --ephemeral)\n\nRefactor first - smaller, unblocks easier review of future mol work.\n\n- Mayor","status":"closed","priority":2,"issue_type":"message","created_at":"2025-12-21T11:31:38.287244-08:00","updated_at":"2025-12-21T12:59:32.937472-08:00","closed_at":"2025-12-21T12:59:32.937472-08:00"} {"id":"bd-o91r","title":"Polymorphic bond command: bd mol bond A B","description":"Implement proto-to-proto bonding to create compound protos.\n\nCOMMAND: bd mol bond proto-feature proto-testing [--as proto-feature-tested] [--type sequential]\n\nBEHAVIOR:\n- Load both proto subgraphs\n- Create new compound proto with combined structure\n- B's root becomes child of A's root (sequential) or sibling (parallel)\n- Wire dependencies: B depends on A's leaf nodes (sequential) or runs parallel\n- Store bonded_from metadata for lineage tracking\n\nFLAGS:\n- --as NAME: Custom ID for compound proto (default: generates hash)\n- --type: sequential (default) or parallel\n- --dry-run: Preview compound structure\n\nOUTPUT:\n- New compound proto in catalog\n- Shows combined variable requirements","notes":"UPDATE: bond is now polymorphic - handles proto+proto, proto+mol, and mol+mol based on operand types. Separate 'attach' command eliminated.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-21T00:58:55.604705-08:00","updated_at":"2025-12-21T10:10:25.385995-08:00","closed_at":"2025-12-21T10:10:25.385995-08:00","dependencies":[{"issue_id":"bd-o91r","depends_on_id":"bd-o5xe","type":"parent-child","created_at":"2025-12-21T00:59:51.30026-08:00","created_by":"daemon"},{"issue_id":"bd-o91r","depends_on_id":"bd-mh4w","type":"blocks","created_at":"2025-12-21T00:59:51.569391-08:00","created_by":"daemon"},{"issue_id":"bd-o91r","depends_on_id":"bd-rnnr","type":"blocks","created_at":"2025-12-21T00:59:51.652397-08:00","created_by":"daemon"}]} {"id":"bd-o9o","title":"Exclude pinned issues from bd ready","description":"Update bd ready to exclude pinned issues. Pinned issues are context markers, not work items, and should never appear in the ready-to-work list.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:41.979073-08:00","updated_at":"2025-12-21T11:29:41.190567-08:00","closed_at":"2025-12-21T11:29:41.190567-08:00","dependencies":[{"issue_id":"bd-o9o","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.392931-08:00","created_by":"daemon"},{"issue_id":"bd-o9o","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.612655-08:00","created_by":"daemon"}]} -{"id":"bd-oajy","title":"Merge: garnet-1767142025508","description":"branch: polecat/garnet-1767142025508\ntarget: main\nsource_issue: garnet-1767142025508\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T17:03:48.369872-08:00","created_by":"beads/polecats/garnet","updated_at":"2025-12-30T17:03:48.369872-08:00"} +{"id":"bd-oajy","title":"Merge: garnet-1767142025508","description":"branch: polecat/garnet-1767142025508\ntarget: main\nsource_issue: garnet-1767142025508\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T17:03:48.369872-08:00","created_by":"beads/polecats/garnet","updated_at":"2025-12-30T18:12:30.966905-08:00","closed_at":"2025-12-30T18:11:07.825828-08:00"} {"id":"bd-obep","title":"Spawn-time bonding: --attach flag","description":"Add --attach flag to bd mol spawn for on-the-fly composition.\n\nCOMMAND: bd mol spawn proto-feature --attach proto-docs --attach proto-testing\n\nBEHAVIOR:\n- Spawn the primary proto as normal\n- For each --attach: spawn that proto and wire to primary\n- Attachments become children of primary's root epic\n- Dependencies wired based on bond type (default: sequential)\n\nFLAGS:\n- --attach PROTO: Attach a proto (can repeat)\n- --attach-type TYPE: sequential (default) or parallel for all attachments\n- --after ISSUE: Attachment point for attached protos\n\nVARIABLE HANDLING:\n- All attached protos share variable namespace\n- Warn on variable name conflicts\n- All --var flags apply to all protos","notes":"DESIGN NOTE: This is syntactic sugar. Equivalent to:\n bd mol spawn proto-A\n bd mol bond $new_epic_id proto-B\n \nKeeping as separate task because it's a common UX pattern worth optimizing.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-21T00:59:06.178092-08:00","updated_at":"2025-12-21T10:42:50.554816-08:00","closed_at":"2025-12-21T10:42:50.554816-08:00","dependencies":[{"issue_id":"bd-obep","depends_on_id":"bd-o5xe","type":"parent-child","created_at":"2025-12-21T00:59:51.368491-08:00","created_by":"daemon"},{"issue_id":"bd-obep","depends_on_id":"bd-o91r","type":"blocks","created_at":"2025-12-21T00:59:51.733369-08:00","created_by":"daemon"}]} {"id":"bd-oehv","title":"Add 'rm' as alias for 'remove' in bd dep subcommand","description":"Cobra supports command aliases. Add 'rm' as a short alias for 'remove' in the dep subcommand for convenience.\n\nExample: bd dep rm issue1 issue2 should work the same as bd dep remove issue1 issue2\n\nImplementation: Add Aliases: []string{\"rm\"} to the depRemoveCmd definition.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-29T17:28:04.489734-08:00","created_by":"mayor","updated_at":"2025-12-29T17:50:11.910495-08:00","closed_at":"2025-12-29T17:50:11.910495-08:00","close_reason":"Added Aliases: []string{\"rm\"} to depRemoveCmd"} {"id":"bd-of2p","title":"Improve version bump molecule with missing steps","description":"During v0.32.1 release, discovered missing steps in the release molecule:\n\n**Missing from molecule:**\n1. Rebuild ~/go/bin/bd (only did ~/.local/bin/bd)\n2. Install beads-mcp from local source: `uv tool install --reinstall ./integrations/beads-mcp`\n3. Restart daemons with `bd daemons killall`\n4. (Optional) Publish beads-mcp to PyPI\n\n**Current molecule steps (bd-6s61):**\n1. Update CHANGELOG.md\n2. Update info.go versionChanges \n3. Run bump-version.sh\n4. Run tests and linting\n5. Update local installation\n6. Commit and push release\n7. Wait for CI\n8. Verify release artifacts\n\n**Proposed additions:**\n- After \"Update local installation\": rebuild BOTH ~/.local/bin/bd AND ~/go/bin/bd\n- Add: \"Install beads-mcp from source\" step\n- Add: \"Restart daemons\" step\n- Add: \"Verify all versions match\" step that checks all artifacts\n\n**Also learned:**\n- Must run from mayor/rig to avoid git conflicts with bd sync (already documented in bump-version.sh)","notes":"CORRECTION: npm publishing IS automated and working!\n\n**Package naming:**\n- OLD: `beads` (npm) - deprecated, stuck at 0.2.1\n- CURRENT: `@beads/bd` (npm) - scoped package, auto-published by CI\n\n**How it works:**\n- CI uses OIDC trusted publishing (no token needed)\n- Workflow: .github/workflows/release.yml ā†’ publish-npm job\n- Permissions: `id-token: write` enables GitHub OIDC\n- To install: `npm install -g @beads/bd` (not `npm install beads`)\n\n**All publishing is automated on tag push:**\n1. GitHub Release - goreleaser āœ“\n2. PyPI - publish-pypi job āœ“\n3. Homebrew - update-homebrew job āœ“\n4. npm (@beads/bd) - publish-npm job āœ“\n\n**Remaining molecule improvements (local steps only):**\n- Rebuild BOTH ~/.local/bin/bd AND ~/go/bin/bd\n- Install beads-mcp from source: `uv tool install --reinstall ./integrations/beads-mcp`\n- Restart daemons: `bd daemons killall`\n- Run from mayor/rig to avoid git conflicts with bd sync\n- Final verification step to check all local versions match","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-20T22:09:11.845787-08:00","updated_at":"2025-12-22T16:01:18.199132-08:00","closed_at":"2025-12-22T16:01:18.199132-08:00"} @@ -633,7 +634,7 @@ {"id":"bd-ot0w","title":"Work on beads-tip: Fix broken Claude integration link in ...","description":"Work on beads-tip: Fix broken Claude integration link in bd doctor (GH#623). Update URL that doesn't exist. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:08.429157-08:00","updated_at":"2025-12-19T23:20:39.790305-08:00","closed_at":"2025-12-19T23:20:39.790305-08:00"} {"id":"bd-otf4","title":"Code Review: PR #481 - Context Engineering Optimizations","description":"Comprehensive code review of the merged context engineering PR (PR #481) that reduces MCP context usage by 80-90%.\n\n## Summary\nThe PR successfully implements lazy tool schema loading and minimal issue models to reduce context window usage. Overall implementation is solid and well-tested.\n\n## Positive Findings\nāœ… Well-designed models (IssueMinimal, CompactedResult)\nāœ… Comprehensive test coverage (28 tests, all passing)\nāœ… Clear documentation and comments\nāœ… Backward compatibility preserved (show() still returns full Issue)\nāœ… Sensible defaults (COMPACTION_THRESHOLD=20, PREVIEW_COUNT=5)\nāœ… Tool catalog complete with all 15 tools documented\n\n## Issues Identified\nSee linked issues for specific followup tasks.\n\n## Context Engineering Architecture\n- discover_tools(): List tool names only (~500 bytes vs ~15KB)\n- get_tool_info(name): Get specific tool details on-demand\n- IssueMinimal: Lightweight model for list views (~80 bytes vs ~400 bytes)\n- CompactedResult: Auto-compacts results with \u003e20 issues\n- _to_minimal(): Conversion function (efficient, no N+1 issues)","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-14T14:24:13.523532-08:00","updated_at":"2025-12-29T13:40:29.726141-08:00","closed_at":"2025-12-29T13:40:29.726141-08:00","close_reason":"Stale/spurious - test artifacts, merged PRs, or auto-close candidates"} {"id":"bd-otli","title":"Wait for CI to pass","description":"Monitor GitHub Actions - all checks must pass before release artifacts are built","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:03.022281-08:00","updated_at":"2025-12-20T00:49:51.928591-08:00","closed_at":"2025-12-20T00:25:52.635223-08:00","dependencies":[{"issue_id":"bd-otli","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.097564-08:00","created_by":"daemon"},{"issue_id":"bd-otli","depends_on_id":"bd-7tuu","type":"blocks","created_at":"2025-12-19T22:56:23.360436-08:00","created_by":"daemon"}]} -{"id":"bd-otyh","title":"Agent bead prefix mismatch: gt- vs bd- for beads polecat agents","description":"When spawning polecats in beads rig, gt sling tries to create agent beads with gt-beads-polecat-* prefix, but beads requires bd- prefix. Warning: 'issue ID gt-beads-polecat-obsidian does not match configured prefix bd'. Agent beads should use the rig's configured prefix.","status":"closed","priority":3,"issue_type":"bug","assignee":"beads/polecats/obsidian","created_at":"2025-12-30T00:13:42.570237-08:00","created_by":"mayor","updated_at":"2025-12-30T16:57:00.673794-08:00","closed_at":"2025-12-30T16:57:00.673794-08:00","close_reason":"Fixed in gastown commit 05b1f30. Agent beads now use the rig's configured prefix from routes.jsonl instead of hardcoding 'gt-'. Modified polecat/manager.go and prime.go to look up the correct prefix."} +{"id":"bd-otyh","title":"Agent bead prefix mismatch: gt- vs bd- for beads polecat agents","description":"When spawning polecats in beads rig, gt sling tries to create agent beads with gt-beads-polecat-* prefix, but beads requires bd- prefix. Warning: 'issue ID gt-beads-polecat-obsidian does not match configured prefix bd'. Agent beads should use the rig's configured prefix.","status":"closed","priority":3,"issue_type":"bug","created_at":"2025-12-30T00:13:42.570237-08:00","created_by":"mayor","updated_at":"2025-12-30T18:12:30.982503-08:00","closed_at":"2025-12-30T16:57:00.673794-08:00","close_reason":"Fixed in gastown commit 05b1f30. Agent beads now use the rig's configured prefix from routes.jsonl instead of hardcoding 'gt-'. Modified polecat/manager.go and prime.go to look up the correct prefix."} {"id":"bd-ox1o","title":"Code Review Round 2: Beads Refactoring","description":"Second pass code review of Beads codebase. Found 10 HIGH/MEDIUM priority issues.\n\n**HIGH (P2):**\n- bd-6dnt: Duplicated IssueDetails struct (4 definitions)\n- bd-vqh9: init.go is 1928 lines\n- bd-it19: show.go is 1592 lines\n\n**MEDIUM (P3):**\n- bd-qobn: 20+ global variables in main.go\n- bd-0e02: Inconsistent error handling patterns\n- bd-g6m5: Mixed daemon/direct mode logic\n- bd-qe7j: Incomplete TODOs in formula/types.go\n- bd-4sxh: Issue struct ~100 fields\n- bd-yuxq: 262 uses of interface{}\n- bd-jbqx: Repeated validation patterns","status":"closed","priority":2,"issue_type":"epic","created_at":"2025-12-28T19:00:15.483532-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-29T13:40:29.721916-08:00","closed_at":"2025-12-29T13:40:29.721916-08:00","close_reason":"Stale/spurious - test artifacts, merged PRs, or auto-close candidates"} {"id":"bd-oxgi","title":"Add mol_type schema field to beads","description":"Add mol_type field to distinguish molecule types (swarm/patrol/work).\n\n## Context\nSwarms need to be distinguishable from regular work molecules. The mol_type field enables:\n- Filtering: bd list --type=swarm \n- Queries: Find all active swarm molecules\n- Coordinator logic: Different handling for different mol types\n\n## Implementation\n1. Add mol_type column to SQLite schema (nullable, default null = work)\n2. Add mol_type to JSONL format\n3. Update create command to accept --mol-type\n4. Update list/ready commands to filter by mol_type\n5. Values: 'swarm', 'patrol', 'work', null (null = work)\n\n## Reference\n~/gt/docs/swarm-architecture.md - 'Data Model' section\n\n## Acceptance\n- bd create --mol-type=swarm works\n- bd list --mol-type=swarm filters correctly\n- Existing molecules work unchanged (backward compatible)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-28T19:11:07.616818-08:00","created_by":"mayor","updated_at":"2025-12-28T19:50:33.213538-08:00","closed_at":"2025-12-28T19:50:33.213538-08:00"} {"id":"bd-oy6c","title":"Bump version in all files","description":"Run ./scripts/bump-version.sh 0.33.2 to update 10 version files. Then run with --commit after info.go is updated.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-21T16:10:13.759706-08:00","updated_at":"2025-12-21T17:29:31.791368-08:00","deleted_at":"2025-12-21T17:29:31.791368-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} @@ -678,7 +679,7 @@ {"id":"bd-qioh","title":"Standardize error handling: replace direct fmt.Fprintf+os.Exit with FatalError","description":"Standardize error handling in cmd/bd/ using FatalError pattern.\n\n## Current State\n~200+ instances of direct `fmt.Fprintf(os.Stderr, ...) + os.Exit(1)` pattern scattered across cmd/bd/*.go files.\n\n## Target Pattern\n\nUse existing FatalError helper (or create if missing):\n\n```go\n// In cmd/bd/helpers.go or similar\nfunc FatalError(format string, args ...interface{}) {\n fmt.Fprintf(os.Stderr, \"Error: \"+format+\"\\n\", args...)\n os.Exit(1)\n}\n\nfunc FatalErrorf(err error, context string) {\n fmt.Fprintf(os.Stderr, \"Error: %s: %v\\n\", context, err)\n os.Exit(1)\n}\n```\n\n## Transformation\n\n```go\n// Before\nfmt.Fprintf(os.Stderr, \"Error: %v\\n\", err)\nos.Exit(1)\n\n// After\nFatalError(\"%v\", err)\n\n// Before\nfmt.Fprintf(os.Stderr, \"Error: invalid --since duration: %v\\n\", err)\nos.Exit(1)\n\n// After\nFatalError(\"invalid --since duration: %v\", err)\n```\n\n## Files to Update (by occurrence count)\nRun: `grep -c \"os.Exit(1)\" cmd/bd/*.go | sort -t: -k2 -rn | head -20`\n\nPriority files (highest occurrence):\n- close.go\n- show.go\n- sync.go\n- init.go\n- list.go\n- create.go\n- update.go\n\n## Implementation Steps\n\n1. **Check if FatalError exists** in cmd/bd/helpers.go or create it\n2. **Create migration script** or use sed:\n ```bash\n # Find patterns to replace\n grep -rn \"fmt.Fprintf(os.Stderr.*Error.*\\n.*os.Exit(1)\" cmd/bd/\n ```\n3. **Replace systematically** file by file\n4. **Run tests** after each file to verify behavior unchanged\n5. **Run linter** to catch any missed patterns\n\n## Verification\n```bash\n# Count remaining direct exits (should be near zero)\ngrep -c \"os.Exit(1)\" cmd/bd/*.go | awk -F: \"{sum+=\\$2} END {print sum}\"\n\n# Run tests\ngo test -short ./cmd/bd/...\n```\n\n## Success Criteria\n- All error exits use FatalError/FatalErrorf\n- Consistent \"Error: \" prefix on all error messages\n- Tests pass\n- No behavior changes (exit codes remain 1)","notes":"## Progress (Dec 2025)\n\nStandardized error handling in 3 major files:\n- compact.go: All 48 os.Exit(1) calls converted to FatalError\n- sync.go: All error patterns converted (kept 1 valid summary exit)\n- migrate.go: 4 patterns converted\n\n## Remaining Work\n~326 fmt.Fprintf(os.Stderr, \"Error:\") patterns remain across ~30 files.\nHigh-count files remaining: show.go (16), dep.go (14), gate.go (28), init.go (11).\n\n## Verification\n- Build compiles successfully\n- Tests pass","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-16T18:17:19.309394-08:00","updated_at":"2025-12-23T14:14:37.939802-08:00","closed_at":"2025-12-23T14:14:37.939802-08:00","dependencies":[{"issue_id":"bd-qioh","depends_on_id":"bd-iz5t","type":"parent-child","created_at":"2025-12-23T12:44:07.43514-08:00","created_by":"daemon"}]} {"id":"bd-qket","title":"Add computed .parent field to JSON output for convenience","description":"Currently parent is only in dependencies[]. Add a top-level .parent field to JSON/JSONL output that extracts the parent-child dependency for easier querying.\n\nExample:\n```bash\n# Current (works but verbose):\nbd show \u003cid\u003e --json | jq '.[0].dependencies[] | select(.dependency_type == \"parent-child\") | .id'\n\n# Desired:\nbd show \u003cid\u003e --json | jq '.[0].parent'\n```\n\nLow priority enhancement.","status":"closed","priority":4,"issue_type":"feature","created_at":"2025-12-27T23:32:44.24217-08:00","created_by":"beads/crew/emma","updated_at":"2025-12-28T02:24:31.453442-08:00","closed_at":"2025-12-28T02:24:31.453442-08:00"} {"id":"bd-qkw9","title":"Run bump-version.sh {{version}}","description":"Run ./scripts/bump-version.sh {{version}} to update version in all files","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:55:58.841424-08:00","updated_at":"2025-12-20T17:59:26.262877-08:00","closed_at":"2025-12-20T01:18:48.99813-08:00","dependencies":[{"issue_id":"bd-qkw9","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:14.786027-08:00","created_by":"daemon"}]} -{"id":"bd-qobn","title":"Code smell: 20+ global variables in main.go","description":"main.go lines 63-103 have over 20 global variables managing command-line state, daemon connection, auto-flush, auto-import, and error handling.\n\n**Globals include:**\ndbPath, actor, store, jsonOutput, daemonStatus, daemonClient, noDaemon, rootCtx, rootCancel, autoFlushEnabled, flushMutex, storeMutex, storeActive, flushFailureCount, lastFlushError, flushManager, hookRunner, skipFinalFlush, autoImportEnabled, versionUpgradeDetected, previousVersion, upgradeAcknowledged\n\n**Problem:**\n- Global state makes testing difficult\n- Race conditions possible between goroutines\n- Hard to track which functions modify which globals\n\n**Acceptance Criteria:**\n- [ ] Create CommandContext struct to hold runtime state\n- [ ] Pass context through command execution\n- [ ] Reduce global count to essential minimum\n- [ ] Tests pass","status":"closed","priority":3,"issue_type":"chore","assignee":"beads/polecats/onyx","created_at":"2025-12-28T18:59:27.551044-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-30T16:17:18.258941-08:00","closed_at":"2025-12-30T16:17:18.258941-08:00","close_reason":"Implemented CommandContext struct to consolidate 20+ globals into 1. Added accessor functions for backward-compatible migration. Updated direct_mode.go as example.","dependencies":[{"issue_id":"bd-qobn","depends_on_id":"bd-ox1o","type":"blocks","created_at":"2025-12-28T19:00:23.651276-08:00","created_by":"daemon"}]} +{"id":"bd-qobn","title":"Code smell: 20+ global variables in main.go","description":"main.go lines 63-103 have over 20 global variables managing command-line state, daemon connection, auto-flush, auto-import, and error handling.\n\n**Globals include:**\ndbPath, actor, store, jsonOutput, daemonStatus, daemonClient, noDaemon, rootCtx, rootCancel, autoFlushEnabled, flushMutex, storeMutex, storeActive, flushFailureCount, lastFlushError, flushManager, hookRunner, skipFinalFlush, autoImportEnabled, versionUpgradeDetected, previousVersion, upgradeAcknowledged\n\n**Problem:**\n- Global state makes testing difficult\n- Race conditions possible between goroutines\n- Hard to track which functions modify which globals\n\n**Acceptance Criteria:**\n- [ ] Create CommandContext struct to hold runtime state\n- [ ] Pass context through command execution\n- [ ] Reduce global count to essential minimum\n- [ ] Tests pass","status":"closed","priority":3,"issue_type":"chore","created_at":"2025-12-28T18:59:27.551044-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-30T18:12:30.978805-08:00","closed_at":"2025-12-30T16:17:18.258941-08:00","close_reason":"Implemented CommandContext struct to consolidate 20+ globals into 1. Added accessor functions for backward-compatible migration. Updated direct_mode.go as example.","dependencies":[{"issue_id":"bd-qobn","depends_on_id":"bd-ox1o","type":"blocks","created_at":"2025-12-28T19:00:23.651276-08:00","created_by":"daemon"}]} {"id":"bd-qpf3","title":"Bug: bd swarm create allows duplicate swarm molecules","description":"Running `bd swarm create \u003cepic\u003e` twice creates two swarm molecules for the same epic.\n\nShould check for existing swarm molecule linked to the epic and either:\n1. Error with 'swarm already exists: \u003cid\u003e'\n2. Warn and return existing swarm ID\n3. Add --force flag to allow creating another\n\nCheck by querying for molecules with mol_type=swarm that have a relates-to dependency to the epic.","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-28T21:38:04.252522-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-28T21:59:59.35812-08:00","closed_at":"2025-12-28T21:59:59.35812-08:00","dependencies":[{"issue_id":"bd-qpf3","depends_on_id":"bd-2ubv","type":"parent-child","created_at":"2025-12-28T21:38:44.740671-08:00","created_by":"daemon"}]} {"id":"bd-qph3","title":"Consolidate git context into single cached struct","description":"Code review finding from bd-7di fix.\n\nCurrently there are 3 separate caches:\n- isWorktreeOnce/isWorktreeResult\n- mainRepoRootOnce/mainRepoRootResult/mainRepoRootErr \n- repoRootOnce/repoRootResult\n\nThese have redundant git calls - e.g. both isWorktreeUncached() and getMainRepoRootUncached() call getGitDirNoError(\"--git-common-dir\").\n\nCould consolidate into a single cached struct:\n```go\ntype gitContext struct {\n gitDir string\n commonDir string\n repoRoot string\n isWorktree bool\n}\n```\n\nThis would reduce git calls further and simplify ResetCaches().\n\nFile: internal/git/gitdir.go","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-25T22:08:53.829215-08:00","updated_at":"2025-12-27T21:49:38.611332-08:00","closed_at":"2025-12-27T21:49:38.611332-08:00"} {"id":"bd-qqc","title":"Release v{{version}}","description":"SUPERSEDED by bd-7bs4. Use the new proto for releases.\n\n","status":"tombstone","priority":1,"issue_type":"epic","created_at":"2025-12-18T12:59:00.610371-08:00","updated_at":"2025-12-24T16:25:31.181723-08:00","labels":["template"],"deleted_at":"2025-12-24T16:25:31.181723-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"epic"} @@ -696,7 +697,7 @@ {"id":"bd-qqc.8","title":"Create and push git tag v{{version}}","description":"Create the release tag and push it:\n\n```bash\ngit tag v{{version}}\ngit push origin v{{version}}\n```\n\nThis triggers the GoReleaser GitHub Action to build release binaries.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:34.659927-08:00","updated_at":"2025-12-24T16:25:30.608841-08:00","dependencies":[{"issue_id":"bd-qqc.8","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:34.660248-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.8","depends_on_id":"bd-vgi5","type":"blocks","created_at":"2025-12-18T22:43:21.209529-08:00","created_by":"daemon"}],"deleted_at":"2025-12-24T16:25:30.608841-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} {"id":"bd-qqc.9","title":"Update Homebrew formula","description":"Update the Homebrew tap with new version:\n\n```bash\n./scripts/update-homebrew.sh {{version}}\n```\n\nThis script waits for GitHub Actions to complete (~5 min), then updates the formula with new SHA256 hashes.\n\nAfter running, verify the formula with:\n\n```bash\nbrew info steveyegge/beads/bd\n```","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:35.815096-08:00","updated_at":"2025-12-24T16:25:30.525596-08:00","dependencies":[{"issue_id":"bd-qqc.9","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:35.816752-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.9","depends_on_id":"bd-qqc.8","type":"blocks","created_at":"2025-12-18T22:43:21.332955-08:00","created_by":"daemon"}],"deleted_at":"2025-12-24T16:25:30.525596-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} {"id":"bd-qsbn","title":"swarm status: Handle external dependencies and error cases","description":"Three issues: (1) Silent error swallowing - GetDependencyRecords errors are silently continued, but analyzeEpicForSwarm returns errors. Inconsistent. (2) External dependencies ignored - if issue depends on something outside epic thats still open, we mark it Ready incorrectly. (3) Command usage string says [epic-id] (optional) but requires exactly 1 arg. File: cmd/bd/swarm.go","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-28T21:31:08.574846-08:00","created_by":"beads/crew/emma","updated_at":"2025-12-30T15:44:43.363959-08:00","closed_at":"2025-12-30T00:36:28.565331-08:00","close_reason":"Fixed all three issues: (1) Made error handling consistent - analyzeEpicForSwarm now adds warnings for GetDependencyRecords failures instead of returning errors. (2) External dependencies now checked in getSwarmStatus - open external deps block issues. (3) Usage strings fixed to use \u003cepic-id\u003e instead of [epic-id] for required arguments."} -{"id":"bd-qvpn","title":"Merge: jasper-1767138512869","description":"branch: polecat/jasper-1767138512869\ntarget: main\nsource_issue: jasper-1767138512869\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T15:51:49.011389-08:00","created_by":"beads/polecats/jasper","updated_at":"2025-12-30T15:51:49.011389-08:00"} +{"id":"bd-qvpn","title":"Merge: jasper-1767138512869","description":"branch: polecat/jasper-1767138512869\ntarget: main\nsource_issue: jasper-1767138512869\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T15:51:49.011389-08:00","created_by":"beads/polecats/jasper","updated_at":"2025-12-30T18:12:30.968698-08:00","closed_at":"2025-12-30T18:11:08.036693-08:00"} {"id":"bd-qy37","title":"Work on gt-8tmz.36: Validate expanded step IDs are unique...","description":"Work on gt-8tmz.36: Validate expanded step IDs are unique. After ApplyExpansions in internal/formula/expand.go, new steps can be created that might have duplicate IDs. Add validation in ApplyExpansions to check for duplicate step IDs after expansion. If duplicates found, return an error with the duplicate IDs. Add test in expand_test.go. When done, commit and push to main.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-25T20:01:27.048018-08:00","updated_at":"2025-12-25T20:04:42.594254-08:00","closed_at":"2025-12-25T20:04:42.594254-08:00"} {"id":"bd-r06v","title":"Merge: bd-phtv","description":"branch: polecat/Pinner\ntarget: main\nsource_issue: bd-phtv\nrig: beads","status":"closed","priority":1,"issue_type":"merge-request","created_at":"2025-12-23T13:48:16.853715-08:00","updated_at":"2025-12-23T19:12:08.342414-08:00","closed_at":"2025-12-23T19:12:08.342414-08:00"} {"id":"bd-r22t","title":"Execute molecule bd-mol-xga: Release beads 0.37.0","description":"Execute molecule bd-mol-xga: Release beads 0.37.0","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-26T01:12:48.454295-08:00","updated_at":"2025-12-26T01:27:26.165571-08:00","closed_at":"2025-12-26T01:27:26.165571-08:00","dependencies":[{"issue_id":"bd-r22t","depends_on_id":"bd-mol-xga","type":"blocks","created_at":"2025-12-26T01:13:17.380653-08:00","created_by":"daemon"}]} @@ -731,7 +732,7 @@ {"id":"bd-s00m.4","title":"Migration: Convert pinned work items to hooked","description":"Migrate existing pinned beads that represent work-on-hook to use 'hooked' status.\n\n## Migration Logic\n\n```sql\nUPDATE issues \nSET status = 'hooked'\nWHERE status = 'pinned' \n AND issue_type NOT IN ('agent', 'role')\n```\n\n## What Stays Pinned\n\n- Agent identity beads (gt-mayor, gt-witness-gastown, etc.)\n- Role definition beads (gt-mayor-role, etc.)\n\n## What Becomes Hooked\n\n- Molecules on hooks (mol_type field set)\n- Regular issues/tasks that were pinned to hooks\n\n## Verification\n\nAfter migration:\n- bd list --status=pinned should only show agents/roles\n- bd list --status=hooked should show work on hooks","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-28T22:17:13.872171-08:00","created_by":"stevey","updated_at":"2025-12-28T22:36:09.039612-08:00","closed_at":"2025-12-28T22:36:09.039612-08:00","dependencies":[{"issue_id":"bd-s00m.4","depends_on_id":"bd-s00m","type":"parent-child","created_at":"2025-12-28T22:17:13.872786-08:00","created_by":"daemon"},{"issue_id":"bd-s00m.4","depends_on_id":"bd-s00m.1","type":"blocks","created_at":"2025-12-28T22:17:22.168228-08:00","created_by":"daemon"}]} {"id":"bd-s0qf","title":"GH#405: Fix prefix parsing with hyphens - multi-hyphen prefixes parsed incorrectly","description":"Fixed: ExtractIssuePrefix was falling back to first-hyphen for word-like suffixes, breaking multi-hyphen prefixes like 'hacker-news' and 'me-py-toolkit'.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:13:56.951359-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-s1pz","title":"Merge: bd-u2sc.4","description":"branch: polecat/Logger\ntarget: main\nsource_issue: bd-u2sc.4\nrig: beads","status":"closed","priority":3,"issue_type":"merge-request","created_at":"2025-12-23T13:45:52.412757-08:00","updated_at":"2025-12-23T19:12:08.356689-08:00","closed_at":"2025-12-23T19:12:08.356689-08:00"} -{"id":"bd-s2t","title":"wish: a 'continue' or similar cmd/flag which means alter last issue","description":"so many time I create an issue and then have another thought: 'oh, before I did X and it crashed there was ZZZ happening' or 'actually that is P4 not P2'. It would be nice if when `bd {cmd}` is used without a {title} or {id} it just adds or updates the most recently touched issue.","status":"closed","priority":3,"issue_type":"task","assignee":"beads/polecats/jasper","created_at":"2025-12-08T06:46:37.529160416-07:00","updated_at":"2025-12-30T16:57:07.001784-08:00","closed_at":"2025-12-30T16:57:07.001784-08:00","close_reason":"Implemented last-touched tracking for update/close without ID"} +{"id":"bd-s2t","title":"wish: a 'continue' or similar cmd/flag which means alter last issue","description":"so many time I create an issue and then have another thought: 'oh, before I did X and it crashed there was ZZZ happening' or 'actually that is P4 not P2'. It would be nice if when `bd {cmd}` is used without a {title} or {id} it just adds or updates the most recently touched issue.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-08T06:46:37.529160416-07:00","updated_at":"2025-12-30T18:12:30.971727-08:00","closed_at":"2025-12-30T16:57:07.001784-08:00","close_reason":"Implemented last-touched tracking for update/close without ID"} {"id":"bd-s5kf","title":"Merge: onyx-1767083477016","description":"branch: polecat/onyx-1767083477016\ntarget: main\nsource_issue: onyx-1767083477016\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T00:37:08.214926-08:00","created_by":"beads/polecats/onyx","updated_at":"2025-12-30T00:54:59.041942-08:00","closed_at":"2025-12-30T00:54:59.041942-08:00","close_reason":"Branch polecat/onyx-1767083477016 no longer exists on remote"} {"id":"bd-sal9","title":"bd mol current: soft cursor showing current/next step","description":"Add bd mol current command for molecule navigation orientation.\n\n## Usage\n\nbd mol current [mol-id]\n\nIf mol-id given, show status for that molecule.\nIf not given, infer from in_progress issues assigned to current agent.\n\n## Output\n\nYou're working on molecule gt-abc (Feature X)\n\n [done] gt-abc.1: Design\n [done] gt-abc.2: Scaffold \n [done] gt-abc.3: Implement\n [current] gt-abc.4: Write tests [in_progress] \u003c- YOU ARE HERE\n [pending] gt-abc.5: Documentation\n [pending] gt-abc.6: Exit decision\n\nProgress: 3/6 steps complete\n\n## Key behaviors\n- Shows full molecule structure with status indicators\n- Highlights current in_progress step\n- If no in_progress, highlights first ready step\n- Works without explicit cursor tracking (inferred from state)\n\n## Implementation notes\n- Query children of mol-id\n- Sort by dependency order\n- Find first in_progress or first ready\n- Format with status indicators\n\n## Gas Town integration\n- gt-lz13: Update templates with nav workflow\n- gt-um6q: Update docs with nav workflow","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-12-22T17:03:30.245964-08:00","updated_at":"2025-12-22T17:36:31.936007-08:00","closed_at":"2025-12-22T17:36:31.936007-08:00"} {"id":"bd-sh4c","title":"Improve test coverage for cmd/bd/setup (28.4% ā†’ 50%)","description":"The setup package has only 28.4% test coverage. Setup commands are critical for first-time user experience.\n\nCurrent coverage: 28.4%\nTarget coverage: 50%","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:04.409346-08:00","updated_at":"2025-12-23T22:37:13.494999-08:00","closed_at":"2025-12-23T22:37:13.494999-08:00"} @@ -750,8 +751,8 @@ {"id":"bd-ta4r","title":"Wisp operations should auto-bypass daemon","description":"During the v0.39.1 release, every wisp operation required --no-daemon flag:\n\nbd --no-daemon mol wisp create beads-release --var version=0.39.1\nbd --no-daemon close bd-eph-xxx\nbd --no-daemon mol burn bd-eph-bv2\n\nSince wisps are ephemeral (Ephemeral=true) and never exported to JSONL, they are inherently local-only. The daemon cannot help with them anyway.\n\nProposal: When operating on bd-eph-* issues or wisp subcommands, auto-detect and bypass the daemon. This would:\n- Reduce friction in wisp workflows\n- Prevent accidental daemon use that would fail anyway\n- Make the ephemeral nature more obvious","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-27T22:51:24.409066-08:00","created_by":"beads/crew/emma","updated_at":"2025-12-28T02:10:30.123755-08:00","closed_at":"2025-12-28T02:10:30.123755-08:00"} {"id":"bd-tbz3","title":"bd init UX Improvements","description":"bd init leaves users with incomplete setup, requiring manual bd doctor --fix. Issues found: (1) git hooks not installed if user declines prompt, (2) no auto-migration when CLI is upgraded, (3) stale merge driver configs from old versions. Fix by making bd init more robust with better defaults and auto-migration.","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-11-21T23:16:00.333543-08:00","updated_at":"2025-12-23T04:20:51.88847-08:00","closed_at":"2025-12-23T04:20:51.88847-08:00"} {"id":"bd-tcvh","title":"Test prefix beads","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T14:24:41.707092-08:00","created_by":"stevey","updated_at":"2025-12-27T14:24:50.421598-08:00","deleted_at":"2025-12-27T14:24:50.421598-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-tggf","title":"Code Health Review Dec 2025: Technical Debt Cleanup","description":"Epic grouping technical debt identified in the Dec 16, 2025 code health review.\n\n## Overall Health Grade: B (Solid foundation, needs cleanup)\n\n### P1 (High Priority):\n- bd-74w1: Consolidate duplicate path-finding utilities\n- [deleted:bd-b6xo]: Remove/fix ClearDirtyIssues() race condition\n- [deleted:bd-b3og]: Fix TestImportBugIntegration deadlock\n\n### P2 (Medium Priority):\n- bd-05a8: Split large files (doctor.go, sync.go)\n- bd-qioh: Standardize error handling patterns\n- bd-rgyd: Split queries.go (1586 lines)\n- bd-9g1z: Fix/remove TestFindJSONLPathDefault\n\n### P3 (Low Priority):\n- bd-ork0: Add comments to 30+ ignored errors\n- bd-4nqq: Remove dead test code in info_test.go\n- bd-dhza: Reduce global state in main.go\n\n## Key Areas:\n1. Code duplication in path utilities\n2. Large monolithic files (5 files \u003e1000 lines)\n3. Global state (25+ variables, 3 deprecated)\n4. Silent error suppression (30+ instances)\n5. Test gaps and dead test code\n6. Atomicity risks in batch operations","status":"closed","priority":2,"issue_type":"epic","assignee":"beads/polecats/ruby","created_at":"2025-12-16T18:18:58.115507-08:00","updated_at":"2025-12-30T16:59:51.322347-08:00","closed_at":"2025-12-30T16:59:51.322347-08:00","close_reason":"All technical debt cleanup tasks completed: path utilities consolidated, large files split, error handling standardized, dead test code removed, global state reduced, ignored errors documented","dependencies":[{"issue_id":"bd-tggf","depends_on_id":"bd-74w1","type":"blocks","created_at":"2025-12-22T21:00:21.429274-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-05a8","type":"blocks","created_at":"2025-12-22T21:00:21.501589-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-9g1z","type":"blocks","created_at":"2025-12-22T21:00:21.571116-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-qioh","type":"blocks","created_at":"2025-12-22T21:00:21.640589-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-rgyd","type":"blocks","created_at":"2025-12-22T21:00:21.710912-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-4nqq","type":"blocks","created_at":"2025-12-22T21:00:21.781914-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-dhza","type":"blocks","created_at":"2025-12-22T21:00:21.852-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-ork0","type":"blocks","created_at":"2025-12-22T21:00:21.930168-08:00","created_by":"daemon"}]} -{"id":"bd-tglv","title":"Merge: onyx-1767142014545","description":"branch: polecat/onyx-1767142014545\ntarget: main\nsource_issue: onyx-1767142014545\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T17:05:30.189116-08:00","created_by":"beads/polecats/onyx","updated_at":"2025-12-30T17:05:30.189116-08:00"} +{"id":"bd-tggf","title":"Code Health Review Dec 2025: Technical Debt Cleanup","description":"Epic grouping technical debt identified in the Dec 16, 2025 code health review.\n\n## Overall Health Grade: B (Solid foundation, needs cleanup)\n\n### P1 (High Priority):\n- bd-74w1: Consolidate duplicate path-finding utilities\n- [deleted:bd-b6xo]: Remove/fix ClearDirtyIssues() race condition\n- [deleted:bd-b3og]: Fix TestImportBugIntegration deadlock\n\n### P2 (Medium Priority):\n- bd-05a8: Split large files (doctor.go, sync.go)\n- bd-qioh: Standardize error handling patterns\n- bd-rgyd: Split queries.go (1586 lines)\n- bd-9g1z: Fix/remove TestFindJSONLPathDefault\n\n### P3 (Low Priority):\n- bd-ork0: Add comments to 30+ ignored errors\n- bd-4nqq: Remove dead test code in info_test.go\n- bd-dhza: Reduce global state in main.go\n\n## Key Areas:\n1. Code duplication in path utilities\n2. Large monolithic files (5 files \u003e1000 lines)\n3. Global state (25+ variables, 3 deprecated)\n4. Silent error suppression (30+ instances)\n5. Test gaps and dead test code\n6. Atomicity risks in batch operations","status":"closed","priority":2,"issue_type":"epic","created_at":"2025-12-16T18:18:58.115507-08:00","updated_at":"2025-12-30T18:12:30.962234-08:00","closed_at":"2025-12-30T16:59:51.322347-08:00","close_reason":"All technical debt cleanup tasks completed: path utilities consolidated, large files split, error handling standardized, dead test code removed, global state reduced, ignored errors documented","dependencies":[{"issue_id":"bd-tggf","depends_on_id":"bd-74w1","type":"blocks","created_at":"2025-12-22T21:00:21.429274-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-05a8","type":"blocks","created_at":"2025-12-22T21:00:21.501589-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-9g1z","type":"blocks","created_at":"2025-12-22T21:00:21.571116-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-qioh","type":"blocks","created_at":"2025-12-22T21:00:21.640589-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-rgyd","type":"blocks","created_at":"2025-12-22T21:00:21.710912-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-4nqq","type":"blocks","created_at":"2025-12-22T21:00:21.781914-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-dhza","type":"blocks","created_at":"2025-12-22T21:00:21.852-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-ork0","type":"blocks","created_at":"2025-12-22T21:00:21.930168-08:00","created_by":"daemon"}]} +{"id":"bd-tglv","title":"Merge: onyx-1767142014545","description":"branch: polecat/onyx-1767142014545\ntarget: main\nsource_issue: onyx-1767142014545\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T17:05:30.189116-08:00","created_by":"beads/polecats/onyx","updated_at":"2025-12-30T18:12:30.983654-08:00","closed_at":"2025-12-30T18:11:07.809452-08:00"} {"id":"bd-thgk","title":"Improve test coverage for internal/compact (18.2% ā†’ 70%)","description":"Improve test coverage for internal/compact package from 17% to 70%.\n\n## Current State\n- Coverage: 17.3%\n- Files: compactor.go, git.go, haiku.go\n- Tests: compactor_test.go (minimal tests)\n\n## Functions Needing Tests\n\n### compactor.go (core compaction)\n- [ ] New - needs config validation tests\n- [ ] CompactTier1 - needs single issue compaction tests\n- [ ] CompactTier1Batch - needs batch processing tests\n- [ ] compactSingleWithResult - internal, test via public API\n\n### git.go\n- [ ] GetCurrentCommitHash - needs git repo fixture tests\n\n### haiku.go (AI summarization) - MOCK REQUIRED\n- [ ] NewHaikuClient - needs API key validation tests\n- [ ] SummarizeTier1 - needs mock API response tests\n- [ ] callWithRetry - needs retry logic tests\n- [ ] isRetryable - needs error classification tests\n- [ ] renderTier1Prompt - needs template rendering tests\n\n## Implementation Guide\n\n1. **Mock the Anthropic API:**\n ```go\n // Create mock HTTP server\n server := httptest.NewServer(http.HandlerFunc(func(w http.ResponseWriter, r *http.Request) {\n json.NewEncoder(w).Encode(map[string]interface{}{\n \"content\": []map[string]string{{\"text\": \"Summarized content\"}},\n })\n }))\n defer server.Close()\n \n // Point client at mock\n client.baseURL = server.URL\n ```\n\n2. **Test scenarios:**\n - Successful compaction with AI summary\n - API failure with retry\n - Rate limit handling\n - Empty issue handling\n - Large issue truncation\n\n3. **Use test database:**\n ```go\n store, cleanup := testutil.NewTestStore(t)\n defer cleanup()\n ```\n\n## Success Criteria\n- Coverage ā‰„ 70%\n- AI calls properly mocked (no real API calls in tests)\n- Retry logic verified\n- Error paths covered\n\n## Run Tests\n```bash\ngo test -v -cover ./internal/compact\ngo test -race ./internal/compact\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-13T20:42:58.455767-08:00","updated_at":"2025-12-23T13:41:10.80832-08:00","closed_at":"2025-12-23T13:41:10.80832-08:00","dependencies":[{"issue_id":"bd-thgk","depends_on_id":"bd-iz5t","type":"parent-child","created_at":"2025-12-23T12:44:07.287377-08:00","created_by":"daemon"}]} {"id":"bd-ti1m","title":"Test hooked styling","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-28T22:33:47.135871-08:00","created_by":"beads/crew/emma","updated_at":"2025-12-28T22:34:26.00871-08:00","closed_at":"2025-12-28T22:34:26.00871-08:00"} {"id":"bd-tj00","title":"Update local installation","description":"go build -o ~/.local/bin/bd ./cmd/bd \u0026\u0026 codesign -s - ~/.local/bin/bd","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:20.616907-08:00","updated_at":"2025-12-20T21:55:42.756171-08:00","closed_at":"2025-12-20T21:55:42.756171-08:00","dependencies":[{"issue_id":"bd-tj00","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:20.619834-08:00","created_by":"daemon"},{"issue_id":"bd-tj00","depends_on_id":"bd-9l0h","type":"blocks","created_at":"2025-12-20T21:53:29.817989-08:00","created_by":"daemon"}]} @@ -763,7 +764,7 @@ {"id":"bd-tvu3","title":"Improve test coverage for internal/beads (48.1% ā†’ 70%)","description":"Improve test coverage for internal/beads package from 48% to 70%.\n\n## Current State\n- Coverage: 48.4%\n- Files: beads.go, fingerprint.go\n- Tests: beads_test.go (moderate coverage)\n\n## Functions Needing Tests\n\n### beads.go (database discovery)\n- [ ] followRedirect - needs redirect file tests\n- [ ] findDatabaseInBeadsDir - needs various dir structures\n- [x] NewSQLiteStorage - likely covered\n- [ ] FindDatabasePath - needs BEADS_DB env var tests\n- [ ] hasBeadsProjectFiles - needs file existence tests\n- [ ] FindBeadsDir - needs directory traversal tests\n- [ ] FindJSONLPath - needs path derivation tests\n- [ ] findGitRoot - needs git repo tests\n- [ ] findDatabaseInTree - needs nested directory tests\n- [ ] FindAllDatabases - needs multi-database tests\n- [ ] FindWispDir - needs wisp directory tests\n- [ ] FindWispDatabasePath - needs wisp path tests\n- [ ] NewWispStorage - needs wisp storage tests\n- [ ] EnsureWispGitignore - needs gitignore creation tests\n- [ ] IsWispDatabase - needs path classification tests\n\n### fingerprint.go (repo identification)\n- [ ] ComputeRepoID - needs various remote URL tests\n- [ ] canonicalizeGitURL - needs URL normalization tests\n- [ ] GetCloneID - needs clone identification tests\n\n## Implementation Guide\n\n1. **Use temp directories:**\n ```go\n func TestFindBeadsDir(t *testing.T) {\n tmpDir := t.TempDir()\n beadsDir := filepath.Join(tmpDir, \".beads\")\n os.MkdirAll(beadsDir, 0755)\n \n // Create test files\n os.WriteFile(filepath.Join(beadsDir, \"beads.db\"), []byte{}, 0644)\n \n // Change to tmpDir and test\n oldWd, _ := os.Getwd()\n os.Chdir(tmpDir)\n defer os.Chdir(oldWd)\n \n result := FindBeadsDir()\n assert.Equal(t, beadsDir, result)\n }\n ```\n\n2. **Test scenarios:**\n - BEADS_DB environment variable set\n - .beads/ in current directory\n - .beads/ in parent directory\n - Redirect file pointing elsewhere\n - No beads directory found\n - Wisp directory alongside main beads\n\n3. **Git remote URL tests:**\n ```go\n tests := []struct{\n input string\n expected string\n }{\n {\"git@github.com:user/repo.git\", \"github.com/user/repo\"},\n {\"https://github.com/user/repo\", \"github.com/user/repo\"},\n {\"ssh://git@github.com/user/repo.git\", \"github.com/user/repo\"},\n }\n ```\n\n## Success Criteria\n- Coverage ā‰„ 70%\n- All FindXxx functions have tests\n- Environment variable handling tested\n- Edge cases (missing dirs, redirects) covered\n\n## Run Tests\n```bash\ngo test -v -cover ./internal/beads\ngo test -race ./internal/beads\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-13T20:42:59.739142-08:00","updated_at":"2025-12-23T13:36:17.885237-08:00","closed_at":"2025-12-23T13:36:17.885237-08:00","dependencies":[{"issue_id":"bd-tvu3","depends_on_id":"bd-iz5t","type":"parent-child","created_at":"2025-12-23T12:44:07.362967-08:00","created_by":"daemon"}]} {"id":"bd-tvus","title":"bd import reports success but writes nothing to empty database","description":"## Problem\n\nIn a fresh crew clone with no database, `bd import` and `bd sync --import-only` report:\n```\nImport complete: 0 created, 0 updated, 416 unchanged, 203 skipped\n```\n\nBut the database remains empty:\n```\nsqlite3 .beads/beads.db 'SELECT COUNT(*) FROM issues'\n0\n```\n\n## Reproduction Steps\n\n1. Fresh clone (crew/dave) with .beads/issues.jsonl containing 619 issues\n2. `bd init --skip-hooks` creates empty database\n3. `bd import -i .beads/issues.jsonl` reports 416 unchanged\n4. Database still has 0 issues\n\n## Expected\n\nImport should create 416 issues in the database.\n\n## Root Cause Hypothesis\n\nThe 'unchanged' count suggests it's comparing against something (maybe in-memory state?) rather than the actual database. The daemon running from a different clone (mayor/rig) may be confusing the import logic.\n\n## Context\n\nDiscovered during v0.39.0 release. Worked around by doing the release manually instead of using the beads-release molecule.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-27T19:56:15.42338-08:00","created_by":"beads/crew/dave","updated_at":"2025-12-27T20:56:24.023684-08:00","closed_at":"2025-12-27T20:56:24.023684-08:00"} {"id":"bd-twbi","title":"Relocate quickstart to bd help quickstart or docs","description":"## Task\nMove `bd quickstart` ā†’ `bd help quickstart` or convert to documentation.\n\n## Options\n\n### Option A: Move to bd help quickstart\n- Create a custom help topic\n- Cobra supports additional help topics\n\n### Option B: Convert to docs only\n- Keep content in docs/QUICKSTART.md\n- Remove the command entirely\n- Update references to point to docs\n\n## Recommendation\nOption B - quickstart is essentially documentation, not a functional command.\nThe command just prints formatted text that could live in docs.\n\n## Implementation (Option B)\n1. Ensure docs/QUICKSTART.md has equivalent content\n2. Add hidden alias that prints \"See docs/QUICKSTART.md or bd help\"\n3. Update all references:\n - README.md\n - docs/INSTALLING.md\n - docs/EXTENDING.md\n - npm-package/INTEGRATION_GUIDE.md\n - .beads/README.md\n\n## Files to modify\n- cmd/bd/quickstart.go (hide or remove)\n- Multiple docs (update references)\n","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-27T15:11:10.238898-08:00","created_by":"mayor","updated_at":"2025-12-27T16:09:23.140978-08:00","closed_at":"2025-12-27T16:09:23.140978-08:00"} -{"id":"bd-txds","title":"Merge: obsidian-1767142004753","description":"branch: polecat/obsidian-1767142004753\ntarget: main\nsource_issue: obsidian-1767142004753\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T16:57:13.543979-08:00","created_by":"beads/polecats/obsidian","updated_at":"2025-12-30T16:57:13.543979-08:00"} +{"id":"bd-txds","title":"Merge: obsidian-1767142004753","description":"branch: polecat/obsidian-1767142004753\ntarget: main\nsource_issue: obsidian-1767142004753\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T16:57:13.543979-08:00","created_by":"beads/polecats/obsidian","updated_at":"2025-12-30T18:12:30.976992-08:00","closed_at":"2025-12-30T18:11:07.875365-08:00"} {"id":"bd-u0g9","title":"GH#405: Prefix parsing with hyphens treats first segment as prefix","description":"Prefix me-py-toolkit gets parsed as just me- when detecting mismatches. Fix prefix parsing to handle multi-hyphen prefixes. See GitHub issue #405.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:18.354066-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-u0sb","title":"Merge: bd-uqfn","description":"branch: polecat/cheedo\ntarget: main\nsource_issue: bd-uqfn\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-20T01:11:52.033964-08:00","updated_at":"2025-12-20T23:17:26.994875-08:00","closed_at":"2025-12-20T23:17:26.994875-08:00"} {"id":"bd-u2sc","title":"GH#692: Code quality and refactoring improvements","description":"Epic for implementing refactoring suggestions from GitHub issue #692 (rsnodgrass). These are code quality improvements that don't change functionality but improve maintainability, type safety, and performance.\n\nOriginal issue: https://github.com/steveyegge/beads/issues/692\n\nHigh priority items:\n1. Replace map[string]interface{} with typed structs for JSON output\n2. Adopt slices.SortFunc instead of sort.Slice (Go 1.21+)\n3. Split large files (sync.go, init.go, show.go)\n4. Introduce slog for structured logging in daemon\n\nLower priority:\n5. Further CLI helper extraction\n6. Preallocate slices in hot paths\n7. Polish items (error wrapping, table-driven parsing)","status":"closed","priority":3,"issue_type":"epic","created_at":"2025-12-22T14:26:31.630004-08:00","updated_at":"2025-12-23T22:07:32.477628-08:00","closed_at":"2025-12-23T22:07:32.477628-08:00"} @@ -777,7 +778,7 @@ {"id":"bd-udsi","title":"Async Gates for Agent Coordination","description":"Agents need an async primitive for waiting on external events (CI completion, API responses, human approval). Gates are wisp issues that block until external conditions are met, managed by the Deacon.\n\n## Core Concepts\n\n**Gate** = wisp issue that blocks until external condition is met\n- Type: gate\n- Phase: wisp (never synced, ephemeral)\n- Assignee: deacon/ (Deacon monitors it)\n- Fields: await_type, await_id, timeout, waiters[]\n\n**Await Types:**\n- gh:run:\u003cid\u003e - GitHub Actions run completion\n- gh:pr:\u003cid\u003e - PR merged/closed\n- timer:\u003cduration\u003e - Simple delay\n- human:\u003cprompt\u003e - Human approval required\n- mail:\u003cpattern\u003e - Wait for mail matching pattern\n\n## Open Questions\n- Should gates live in wisp storage or main storage with wisp flag?\n- Do we need a gate catalog (like molecule catalog)?\n- Should waits-for dep type work with gates?","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-23T11:44:02.711062-08:00","updated_at":"2025-12-23T12:24:43.537615-08:00","closed_at":"2025-12-23T12:24:43.537615-08:00"} {"id":"bd-ujz5","title":"Explore wiki-style documentation structure","description":"Our docs are growing into a book. Evaluate options for wiki-like structure:\n\n**Options to evaluate:**\n- GitHub Wiki (built-in, limited features)\n- mdBook (Rust, CLI-friendly, produces HTML/PDF/ePub)\n- MkDocs / Material for MkDocs (Python, beautiful themes)\n- Docusaurus (React, powerful but complex)\n- Plain markdown with good structure (current approach)\n\n**Requirements:**\n- Git-backed (version control)\n- Markdown-native (agents can edit)\n- Table of contents / navigation\n- Cross-linking between pages\n- Searchable\n- Can be hosted on GitHub Pages\n\n**Deliverables:**\n- Recommendation with pros/cons\n- If switching: migration plan\n- If staying with markdown: structure guidelines for wiki-like organization\n\nReferences:\n- https://squidfunk.github.io/mkdocs-material/alternatives/\n- https://www.archbee.com/blog/gitbook-alternatives","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-24T18:23:23.665509-08:00","updated_at":"2025-12-25T22:55:41.578876-08:00","closed_at":"2025-12-25T22:55:41.578876-08:00"} {"id":"bd-ul59","title":"Update molecular chemistry docs with discoveries","description":"Document recent discoveries about molecule/epic relationship and lifecycle:\n\n**Layer Cake (corrected order):**\n```\nFormulas (YAML compile-time macros)\n ā†“\nProtos (template label, read-only)\n ā†“\nMolecules (pour, bond, squash, burn)\n ā†“\nEpics (parent-child, dependencies) ā† DATA PLANE\n ā†“\nIssues (JSONL, git-backed) ā† STORAGE\n```\n\n**Key insight:** Molecules work without protos - you can create ad-hoc molecules.\nProtos are templates FOR molecules, not the other way around.\n\n**New concepts to document:**\n1. Orphan vs Stale matrix (blocking Ɨ assigned dimensions)\n2. Graph pressure as staleness indicator (not time)\n3. Parallelism via absence of depends_on (default parallel, opt-in sequential)\n4. progress.Completed/Total are computed, not stored\n5. WaitsFor: all-children for dynamic fanout gates\n\n**Common pitfalls for agents:**\n- Thinking phases/steps imply sequence (NO - deps do)\n- Confusing protos with molecules\n- Temporal language inverting dependencies\n- Forgetting to squash/burn wisps\n\n**Consider splitting docs:**\n- molecules.md ā†’ conceptual overview\n- formulas.md ā†’ YAML syntax reference\n- lifecycle.md ā†’ pour/squash/burn/bond operations\n- patterns.md ā†’ Christmas Ornament, factory assembly, etc.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-24T18:23:23.968937-08:00","updated_at":"2025-12-24T19:30:49.011831-08:00","closed_at":"2025-12-24T19:30:49.011831-08:00"} -{"id":"bd-umbf","title":"Design contributor namespace isolation for beads pollution prevention","description":"## Problem\n\nWhen contributors work on beads-the-project using beads-the-tool, their personal work-tracking issues leak into PRs. The .beads/issues.jsonl is intentionally tracked (it's the project's issue database), but contributors' local issues pollute the diff.\n\nThis is a recursion problem unique to self-hosting projects.\n\n## Possible Solutions to Explore\n\n1. **Contributor namespaces** - Each contributor gets a private prefix (e.g., `bd-steve-xxxx`) that's gitignored or filtered\n2. **Separate database** - Contributors use BEADS_DIR pointing elsewhere for personal tracking\n3. **Issue ownership/visibility flags** - Mark issues as \"local-only\" vs \"project\"\n4. **Prefix-based filtering** - Configure which prefixes are committed vs ignored\n\n## Design Considerations\n\n- Should be zero-friction for contributors (no manual setup)\n- Must not break existing workflows\n- Needs to work with sync/collaboration features\n- Consider: what if a \"personal\" issue graduates to \"project\" issue?\n\n## Expansion Needed\n\nThis is a placeholder. Needs detailed design exploration before implementation.","design":"See docs/CONTRIBUTOR_NAMESPACE_ISOLATION.md for complete design. Recommends auto-routing (Approach 4) with role detection. Key gap: bd-6x6g needs implementation to actually route issues to target repo.","status":"closed","priority":2,"issue_type":"feature","assignee":"beads/polecats/onyx","created_at":"2025-12-13T18:00:29.638743-08:00","updated_at":"2025-12-30T17:05:13.732967-08:00","closed_at":"2025-12-30T17:05:13.732967-08:00","close_reason":"Design complete. See docs/CONTRIBUTOR_NAMESPACE_ISOLATION.md. Recommends auto-routing approach with role detection. Key gap identified: bd-6x6g needs implementation to actually route issues to target repo."} +{"id":"bd-umbf","title":"Design contributor namespace isolation for beads pollution prevention","description":"## Problem\n\nWhen contributors work on beads-the-project using beads-the-tool, their personal work-tracking issues leak into PRs. The .beads/issues.jsonl is intentionally tracked (it's the project's issue database), but contributors' local issues pollute the diff.\n\nThis is a recursion problem unique to self-hosting projects.\n\n## Possible Solutions to Explore\n\n1. **Contributor namespaces** - Each contributor gets a private prefix (e.g., `bd-steve-xxxx`) that's gitignored or filtered\n2. **Separate database** - Contributors use BEADS_DIR pointing elsewhere for personal tracking\n3. **Issue ownership/visibility flags** - Mark issues as \"local-only\" vs \"project\"\n4. **Prefix-based filtering** - Configure which prefixes are committed vs ignored\n\n## Design Considerations\n\n- Should be zero-friction for contributors (no manual setup)\n- Must not break existing workflows\n- Needs to work with sync/collaboration features\n- Consider: what if a \"personal\" issue graduates to \"project\" issue?\n\n## Expansion Needed\n\nThis is a placeholder. Needs detailed design exploration before implementation.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-13T18:00:29.638743-08:00","updated_at":"2025-12-30T18:12:30.976419-08:00","closed_at":"2025-12-30T17:05:13.732967-08:00","close_reason":"Design complete. See docs/CONTRIBUTOR_NAMESPACE_ISOLATION.md. Recommends auto-routing approach with role detection. Key gap identified: bd-6x6g needs implementation to actually route issues to target repo."} {"id":"bd-uqfn","title":"Work on beads-wkt: Output control parameters for MCP tool...","description":"Work on beads-wkt: Output control parameters for MCP tools (GH#622). Add brief, fields, max_description_length params to ready/list/show. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:57:10.675535-08:00","updated_at":"2025-12-20T00:49:51.929271-08:00","closed_at":"2025-12-19T23:28:25.362931-08:00"} {"id":"bd-usro","title":"Rename 'template instantiate' to 'mol bond'","description":"Rename the template instantiation command to match molecule metaphor.\n\nCurrent: bd template instantiate \u003cid\u003e --var key=value\nTarget: bd mol bond \u003cid\u003e --var key=value\n\nChanges needed:\n- Add 'mol' command group (or extend existing)\n- Add 'bond' subcommand that wraps template instantiate logic\n- Keep 'template instantiate' as deprecated alias for backward compat\n- Update help text and docs to use molecule terminology\n\nThe 'bond' verb captures:\n1. Chemistry metaphor (molecules bond to form structures)\n2. Dependency linking (child issues bonded in a DAG)\n3. Short and active\n\nSee also: molecule execution model in Gas Town","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-12-20T16:56:37.582795-08:00","updated_at":"2025-12-20T23:22:43.567337-08:00","closed_at":"2025-12-20T23:22:43.567337-08:00"} {"id":"bd-uu8p","title":"Routing bypassed in daemon mode","description":"## Bug\n\nPrefix-based routing (routes.jsonl) only works in direct mode. When the daemon is running, it bypasses routing logic because:\n\n1. Daemon mode resolves IDs via RPC (`daemonClient.ResolveID`)\n2. Daemon uses its own store, which only knows about local beads\n3. The routing logic in `resolveAndGetIssueWithRouting` is only called in direct mode\n\n## Reproduction\n\n```bash\n# With daemon running:\ncd ~/gt\nbd show gt-1py3y # Fails - daemon can't find it\n\n# With daemon bypassed:\nbd --no-daemon show gt-1py3y # Works - uses routing\n```\n\n## Fix Options\n\n### Option A: Client-side routing detection (Recommended)\nBefore calling daemon RPC, check if the ID prefix matches a route to a different beads dir. If so, use direct mode with routing for that ID.\n\n```go\n// In show.go, before daemon mode:\nif daemonClient != nil \u0026\u0026 needsRouting(id) {\n // Fall back to direct mode for this ID\n result, err := resolveAndGetIssueWithRouting(ctx, store, id)\n ...\n}\n```\n\n### Option B: Daemon-side routing\nAdd routing support to the daemon RPC server. More complex - daemon would need to:\n- Load routes.jsonl on startup\n- Open connections to multiple databases\n- Route requests based on ID prefix\n\n### Option C: Hybrid\nDaemon returns \"not found + prefix hint\", client retries with routing.\n\n## Recommendation\n\nOption A is simplest. The client already has routing logic; just use it when we detect a routed prefix.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-26T14:52:00.452285-08:00","updated_at":"2025-12-26T14:54:51.572289-08:00","closed_at":"2025-12-26T14:54:51.572289-08:00"} @@ -808,12 +809,12 @@ {"id":"bd-weu8","title":"Formula parser: YAML schema for .formula.yaml files","description":"Implement formula parsing from YAML:\n- Define YAML schema for .formula.yaml files\n- Parse steps, compose rules, vars\n- Support extends for formula inheritance\n- Validate formula structure\n\nSchema should support:\n- formula: name\n- description: text\n- version: number\n- type: workflow|expansion|aspect\n- vars: variable definitions\n- steps: step definitions\n- compose: composition rules\n\nGas Town tracking: gt-8tmz.12","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-24T13:19:41.30319-08:00","updated_at":"2025-12-24T13:44:20.018577-08:00","closed_at":"2025-12-24T13:44:20.018577-08:00"} {"id":"bd-whgv","title":"Merge: bd-401h","description":"branch: polecat/rictus\ntarget: main\nsource_issue: bd-401h\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:20:37.854953-08:00","updated_at":"2025-12-20T23:17:26.999477-08:00","closed_at":"2025-12-20T23:17:26.999477-08:00"} {"id":"bd-wp5j","title":"Merge: bd-indn","description":"branch: polecat/rictus\ntarget: main\nsource_issue: bd-indn\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-23T20:45:51.286598-08:00","updated_at":"2025-12-23T21:21:57.697826-08:00","closed_at":"2025-12-23T21:21:57.697826-08:00"} -{"id":"bd-wx8t","title":"Merge: topaz-1767138533986","description":"branch: polecat/topaz-1767138533986\ntarget: main\nsource_issue: topaz-1767138533986\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T16:00:41.075953-08:00","created_by":"beads/polecats/topaz","updated_at":"2025-12-30T16:00:41.075953-08:00"} +{"id":"bd-wx8t","title":"Merge: topaz-1767138533986","description":"branch: polecat/topaz-1767138533986\ntarget: main\nsource_issue: topaz-1767138533986\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T16:00:41.075953-08:00","created_by":"beads/polecats/topaz","updated_at":"2025-12-30T18:12:30.97821-08:00","closed_at":"2025-12-30T18:11:07.939374-08:00"} {"id":"bd-wza7","title":"Code cleanup: Search for leftover debugging code","description":"Scan the beads codebase for debugging artifacts that should be removed before release:\n\n## Patterns to search for:\n- `fmt.Printf` debugging statements (vs proper logging)\n- `// DEBUG`, `// TODO: remove`, `// TEMP` comments\n- `log.Printf` that should use structured logging\n- Hardcoded test values or paths\n- `panic()` calls that should be proper error handling\n- Commented-out code blocks\n- `time.Sleep` debugging delays\n\n## Files to check:\n- cmd/bd/*.go\n- internal/**/*.go\n\n## Acceptance:\n- Remove or convert all debugging artifacts\n- Ensure no test pollution in production code","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-29T13:17:26.681839-08:00","created_by":"mayor","updated_at":"2025-12-29T13:20:49.422542-08:00","closed_at":"2025-12-29T13:20:49.422542-08:00","close_reason":"Code audit complete: no debugging artifacts found requiring cleanup"} {"id":"bd-x0zl","title":"Remove/relocate pin command (covered by mol commands)","description":"## Task\nReview and potentially remove `bd pin` as it overlaps with mol commands.\n\n## Analysis needed\n- `bd pin` sets the pinned flag on issues for agent work assignment\n- `bd hook` shows what's pinned to an agent\n- `bd unpin` removes the pinned flag\n- `bd mol` commands deal with molecules/templates\n\n## Options\n1. **Keep as-is**: pin/unpin are about work assignment, mol is about templates\n2. **Move under mol**: `bd mol pin`, `bd mol unpin` \n3. **Deprecate**: If mol commands fully cover the use case\n\n## Decision criteria\n- Are pin/unpin used independently of mol workflows?\n- Does Gas Town (gt) use these commands?\n\n## Recommendation\nCheck gt codebase for usage patterns before deciding. If pin/unpin are primarily used with mol workflows, consolidate under mol. If used independently, keep as-is.\n\n## Files potentially affected\n- cmd/bd/pin.go\n- cmd/bd/unpin.go\n- cmd/bd/hook.go\n- cmd/bd/mol.go (if moving)\n","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-27T15:11:09.799471-08:00","created_by":"mayor","updated_at":"2025-12-27T16:01:53.437698-08:00","closed_at":"2025-12-27T16:01:53.437698-08:00","comments":[{"id":6,"issue_id":"bd-x0zl","author":"stevey","text":"## Analysis Complete\n\n**Findings:**\n- bd pin, bd unpin, bd hook are **never used** by gt\n- gt uses bd update --status=pinned --assignee=agent instead (10 usages)\n- Code comment says 'pinned field is cosmetic for bd hook visibility'\n- gt mol status provides equivalent hook inspection\n\n**Recommendation:** Remove all three commands as dead code.","created_at":"2025-12-28T00:00:14Z"}]} {"id":"bd-x1xs","title":"Work on beads-1ra: Add molecules.jsonl as separate catalo...","description":"Work on beads-1ra: Add molecules.jsonl as separate catalog file for template molecules","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T20:17:44.840032-08:00","updated_at":"2025-12-21T15:28:17.633716-08:00","closed_at":"2025-12-21T15:28:17.633716-08:00"} {"id":"bd-x2bd","title":"Merge: bd-likt","description":"branch: polecat/Gater\ntarget: main\nsource_issue: bd-likt\nrig: beads","status":"closed","priority":3,"issue_type":"merge-request","created_at":"2025-12-23T13:46:27.091846-08:00","updated_at":"2025-12-23T19:12:08.355637-08:00","closed_at":"2025-12-23T19:12:08.355637-08:00"} -{"id":"bd-x2ht","title":"Add BD_AGENT_MODE for ultra-compact output","description":"Optional agent-optimized output mode triggered by BD_AGENT_MODE=1 env var:\n\n- Compact format: just ID and title per line\n- Default to open/in_progress only\n- No colors, no emojis\n- Lower default limit (~20)\n- One-line summaries\n\nThis is independent but benefits from TTY detection infrastructure.\n\nConsider auto-detecting agent context via CLAUDE_CODE or similar env vars.","notes":"## Implementation Plan\n\n### Trigger\n```bash\nBD_AGENT_MODE=1 bd list\n```\n\nOr auto-detect common agent environments:\n```go\nfunc IsAgentMode() bool {\n if os.Getenv(\"BD_AGENT_MODE\") != \"\" {\n return true\n }\n // Auto-detect known agent contexts\n if os.Getenv(\"CLAUDE_CODE\") != \"\" {\n return true\n }\n // Add other agent env vars as discovered\n return false\n}\n```\n\n### Code Changes\n\n1. **Add agent output format** (cmd/bd/list.go):\n```go\nif ui.IsAgentMode() {\n // Ultra-compact: just ID and title\n for _, issue := range issues {\n fmt.Printf(\"%s: %s\\n\", issue.ID, issue.Title)\n }\n return\n}\n```\n\n2. **Agent mode defaults**:\n```go\nif ui.IsAgentMode() {\n if limit == 0 {\n limit = 20 // Lower default for agents\n }\n if status == \"\" {\n // Only actionable work\n filter.Status = []types.Status{\"open\", \"in_progress\"}\n }\n}\n```\n\n### Output Format (Agent Mode)\n```\nbd-mypl: Default bd list to non-closed issues\nbd-v5fn: Add default limit to bd list (50 issues)\nbd-jdz3: Add pager support to bd list\n```\n\nNo colors, no emojis, no brackets, no priority display.\nJust ID + title for maximum context efficiency.\n\n### Testing\n- `BD_AGENT_MODE=1 bd list` outputs compact format\n- Verify no ANSI codes in output\n- Verify default limit is 20\n- Verify only open/in_progress shown by default","status":"closed","priority":4,"issue_type":"feature","assignee":"beads/polecats/ruby","created_at":"2025-12-29T15:25:11.057467-08:00","created_by":"stevey","updated_at":"2025-12-30T15:59:24.474412-08:00","closed_at":"2025-12-30T15:59:24.474412-08:00","close_reason":"Implemented: BD_AGENT_MODE=1 triggers ultra-compact output format"} +{"id":"bd-x2ht","title":"Add BD_AGENT_MODE for ultra-compact output","description":"Optional agent-optimized output mode triggered by BD_AGENT_MODE=1 env var:\n\n- Compact format: just ID and title per line\n- Default to open/in_progress only\n- No colors, no emojis\n- Lower default limit (~20)\n- One-line summaries\n\nThis is independent but benefits from TTY detection infrastructure.\n\nConsider auto-detecting agent context via CLAUDE_CODE or similar env vars.","notes":"## Implementation Plan\n\n### Trigger\n```bash\nBD_AGENT_MODE=1 bd list\n```\n\nOr auto-detect common agent environments:\n```go\nfunc IsAgentMode() bool {\n if os.Getenv(\"BD_AGENT_MODE\") != \"\" {\n return true\n }\n // Auto-detect known agent contexts\n if os.Getenv(\"CLAUDE_CODE\") != \"\" {\n return true\n }\n // Add other agent env vars as discovered\n return false\n}\n```\n\n### Code Changes\n\n1. **Add agent output format** (cmd/bd/list.go):\n```go\nif ui.IsAgentMode() {\n // Ultra-compact: just ID and title\n for _, issue := range issues {\n fmt.Printf(\"%s: %s\\n\", issue.ID, issue.Title)\n }\n return\n}\n```\n\n2. **Agent mode defaults**:\n```go\nif ui.IsAgentMode() {\n if limit == 0 {\n limit = 20 // Lower default for agents\n }\n if status == \"\" {\n // Only actionable work\n filter.Status = []types.Status{\"open\", \"in_progress\"}\n }\n}\n```\n\n### Output Format (Agent Mode)\n```\nbd-mypl: Default bd list to non-closed issues\nbd-v5fn: Add default limit to bd list (50 issues)\nbd-jdz3: Add pager support to bd list\n```\n\nNo colors, no emojis, no brackets, no priority display.\nJust ID + title for maximum context efficiency.\n\n### Testing\n- `BD_AGENT_MODE=1 bd list` outputs compact format\n- Verify no ANSI codes in output\n- Verify default limit is 20\n- Verify only open/in_progress shown by default","status":"closed","priority":4,"issue_type":"feature","created_at":"2025-12-29T15:25:11.057467-08:00","created_by":"stevey","updated_at":"2025-12-30T18:12:30.979385-08:00","closed_at":"2025-12-30T15:59:24.474412-08:00","close_reason":"Implemented: BD_AGENT_MODE=1 triggers ultra-compact output format"} {"id":"bd-x36g","title":"Thread Test 2","description":"Testing direct mode","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:16.470631-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} {"id":"bd-x3hi","title":"Support redirect files in .beads/ directory","description":"Gas Town creates polecat worktrees with .beads/redirect files that point to a shared beads database. The bd CLI should:\n\n1. When finding a .beads/ directory, check if it contains a 'redirect' file\n2. If redirect exists, read the relative path and use that as the beads directory\n3. This allows multiple git worktrees to share a single beads database\n\nExample:\n- polecats/alpha/.beads/redirect contains '../../mayor/rig/.beads'\n- bd commands from alpha should use mayor/rig/.beads\n\nCurrently bd ignores redirect files and either uses the local .beads/ or walks up to find a parent .beads/.\n\nRelated: gt-nriy (test message that can't be retrieved due to missing redirect support)","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-12-20T21:46:23.415172-08:00","updated_at":"2025-12-20T21:59:25.759664-08:00","closed_at":"2025-12-20T21:59:25.759664-08:00"} {"id":"bd-x3j8","title":"Update info.go versionChanges","description":"Add 0.32.1 entry to versionChanges map in cmd/bd/info.go","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:17.344841-08:00","updated_at":"2025-12-20T21:54:31.906761-08:00","closed_at":"2025-12-20T21:54:31.906761-08:00","dependencies":[{"issue_id":"bd-x3j8","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:17.346736-08:00","created_by":"daemon"},{"issue_id":"bd-x3j8","depends_on_id":"bd-rgd7","type":"blocks","created_at":"2025-12-20T21:53:29.62309-08:00","created_by":"daemon"}]} diff --git a/internal/storage/sqlite/ready.go b/internal/storage/sqlite/ready.go index edbededc..52a955ae 100644 --- a/internal/storage/sqlite/ready.go +++ b/internal/storage/sqlite/ready.go @@ -41,7 +41,8 @@ func (s *SQLiteStorage) GetReadyWork(ctx context.Context, filter types.WorkFilte // - gate: async wait conditions // - molecule: workflow containers // - message: mail/communication items - whereClauses = append(whereClauses, "i.issue_type NOT IN ('merge-request', 'gate', 'molecule', 'message')") + // - agent: identity/state tracking beads + whereClauses = append(whereClauses, "i.issue_type NOT IN ('merge-request', 'gate', 'molecule', 'message', 'agent')") } if filter.Priority != nil {