From c7615e40754ce7967871580b5255aff94e09ad69 Mon Sep 17 00:00:00 2001 From: Doug Campos Date: Sat, 20 Dec 2025 18:07:48 -0500 Subject: [PATCH 01/18] fix(setup): preserve symlinks in atomicWriteFile Add ResolveForWrite helper that resolves symlinks before writing, so atomic writes go to the symlink target instead of replacing the symlink itself. --- cmd/bd/setup/utils.go | 12 +++++++-- cmd/bd/setup/utils_test.go | 39 ++++++++++++++++++++++++++++ internal/utils/path.go | 17 +++++++++++++ internal/utils/path_test.go | 51 +++++++++++++++++++++++++++++++++++++ 4 files changed, 117 insertions(+), 2 deletions(-) diff --git a/cmd/bd/setup/utils.go b/cmd/bd/setup/utils.go index 788a051f..4dbca094 100644 --- a/cmd/bd/setup/utils.go +++ b/cmd/bd/setup/utils.go @@ -4,12 +4,20 @@ import ( "fmt" "os" "path/filepath" + + "github.com/steveyegge/beads/internal/utils" ) // atomicWriteFile writes data to a file atomically using a unique temporary file. // This prevents race conditions when multiple processes write to the same file. +// If path is a symlink, writes to the resolved target (preserving the symlink). func atomicWriteFile(path string, data []byte) error { - dir := filepath.Dir(path) + targetPath, err := utils.ResolveForWrite(path) + if err != nil { + return fmt.Errorf("resolve path: %w", err) + } + + dir := filepath.Dir(targetPath) // Create unique temp file in same directory tmpFile, err := os.CreateTemp(dir, ".*.tmp") @@ -38,7 +46,7 @@ func atomicWriteFile(path string, data []byte) error { } // Atomic rename - if err := os.Rename(tmpPath, path); err != nil { + if err := os.Rename(tmpPath, targetPath); err != nil { _ = os.Remove(tmpPath) // Best effort cleanup return fmt.Errorf("rename temp file: %w", err) } diff --git a/cmd/bd/setup/utils_test.go b/cmd/bd/setup/utils_test.go index dc68740a..4c5eeb03 100644 --- a/cmd/bd/setup/utils_test.go +++ b/cmd/bd/setup/utils_test.go @@ -67,6 +67,45 @@ func TestAtomicWriteFile(t *testing.T) { } } +func TestAtomicWriteFile_PreservesSymlink(t *testing.T) { + tmpDir := t.TempDir() + + // Create target file + target := filepath.Join(tmpDir, "target.txt") + if err := os.WriteFile(target, []byte("original"), 0644); err != nil { + t.Fatal(err) + } + + // Create symlink + link := filepath.Join(tmpDir, "link.txt") + if err := os.Symlink(target, link); err != nil { + t.Fatal(err) + } + + // Write via symlink + if err := atomicWriteFile(link, []byte("updated")); err != nil { + t.Fatalf("atomicWriteFile failed: %v", err) + } + + // Verify symlink still exists + info, err := os.Lstat(link) + if err != nil { + t.Fatalf("failed to lstat link: %v", err) + } + if info.Mode()&os.ModeSymlink == 0 { + t.Error("symlink was replaced with regular file") + } + + // Verify target was updated + data, err := os.ReadFile(target) + if err != nil { + t.Fatalf("failed to read target: %v", err) + } + if string(data) != "updated" { + t.Errorf("target content = %q, want %q", string(data), "updated") + } +} + func TestDirExists(t *testing.T) { tmpDir := t.TempDir() diff --git a/internal/utils/path.go b/internal/utils/path.go index d03c63e0..58590bbf 100644 --- a/internal/utils/path.go +++ b/internal/utils/path.go @@ -69,6 +69,23 @@ func FindMoleculesJSONLInDir(dbDir string) string { return "" } +// ResolveForWrite returns the path to write to, resolving symlinks. +// If path is a symlink, returns the resolved target path. +// If path doesn't exist, returns path unchanged (new file). +func ResolveForWrite(path string) (string, error) { + info, err := os.Lstat(path) + if err != nil { + if os.IsNotExist(err) { + return path, nil + } + return "", err + } + if info.Mode()&os.ModeSymlink != 0 { + return filepath.EvalSymlinks(path) + } + return path, nil +} + // CanonicalizePath converts a path to its canonical form by: // 1. Converting to absolute path // 2. Resolving symlinks diff --git a/internal/utils/path_test.go b/internal/utils/path_test.go index c70b64b3..c0530c3c 100644 --- a/internal/utils/path_test.go +++ b/internal/utils/path_test.go @@ -179,3 +179,54 @@ func TestCanonicalizePathSymlink(t *testing.T) { } } } + +func TestResolveForWrite(t *testing.T) { + t.Run("regular file", func(t *testing.T) { + tmpDir := t.TempDir() + file := filepath.Join(tmpDir, "regular.txt") + if err := os.WriteFile(file, []byte("test"), 0644); err != nil { + t.Fatal(err) + } + + got, err := ResolveForWrite(file) + if err != nil { + t.Fatalf("unexpected error: %v", err) + } + if got != file { + t.Errorf("got %q, want %q", got, file) + } + }) + + t.Run("symlink", func(t *testing.T) { + tmpDir := t.TempDir() + target := filepath.Join(tmpDir, "target.txt") + if err := os.WriteFile(target, []byte("test"), 0644); err != nil { + t.Fatal(err) + } + link := filepath.Join(tmpDir, "link.txt") + if err := os.Symlink(target, link); err != nil { + t.Fatal(err) + } + + got, err := ResolveForWrite(link) + if err != nil { + t.Fatalf("unexpected error: %v", err) + } + if got != target { + t.Errorf("got %q, want %q", got, target) + } + }) + + t.Run("non-existent", func(t *testing.T) { + tmpDir := t.TempDir() + newFile := filepath.Join(tmpDir, "new.txt") + + got, err := ResolveForWrite(newFile) + if err != nil { + t.Fatalf("unexpected error: %v", err) + } + if got != newFile { + t.Errorf("got %q, want %q", got, newFile) + } + }) +} From 4fa0866fcf4c0c9a67507e403dc72342ef535a86 Mon Sep 17 00:00:00 2001 From: Steve Yegge Date: Sat, 20 Dec 2025 17:56:46 -0800 Subject: [PATCH 02/18] refactor: remove bd mail commands - mail moves to Gas Town MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Mail is orchestration, not data plane. The bd mail commands were just sugar over bd create/list/show with type=message. Gas Town (gt) now owns mail routing and delivery. Removed: - cmd/bd/mail.go - all mail subcommands (send, inbox, read, ack, reply) - cmd/bd/mail_test.go - mail command tests - docs/messaging.md - dedicated mail documentation - EventMessage hook - no longer triggered Kept (data plane): - type=message as valid issue type - Sender, Ephemeral fields on issues - replies_to dependency type for threading Coordination: gt-9xg implements native mail in Gas Town. šŸ¤– Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 --- .beads/issues.jsonl | 4 + CLAUDE.md | 49 +-- cmd/bd/mail.go | 727 ----------------------------------- cmd/bd/mail_test.go | 392 ------------------- docs/graph-links.md | 25 +- docs/messaging.md | 254 ------------ internal/hooks/hooks.go | 16 +- internal/hooks/hooks_test.go | 11 +- 8 files changed, 31 insertions(+), 1447 deletions(-) delete mode 100644 cmd/bd/mail.go delete mode 100644 cmd/bd/mail_test.go delete mode 100644 docs/messaging.md diff --git a/.beads/issues.jsonl b/.beads/issues.jsonl index ae0b29d5..3a98c26c 100644 --- a/.beads/issues.jsonl +++ b/.beads/issues.jsonl @@ -32,6 +32,7 @@ {"id":"bd-49kw","title":"Workaround for FastMCP outputSchema bug in Claude Code","description":"The beads MCP server (v0.23.1) successfully connects to Claude Code, but all tools fail to load with a schema validation error due to a bug in FastMCP 2.13.1.\n\nError: \"Invalid literal value, expected \\\"object\\\"\" in outputSchema.\n\nRoot Cause: FastMCP generates outputSchema with $ref at root level without \"type\": \"object\" for self-referential models (Issue).\n\nWorkaround: Use slash commands (/beads:ready) or wait for FastMCP fix.\n","status":"open","priority":1,"issue_type":"bug","created_at":"2025-11-20T18:55:39.041831-05:00","updated_at":"2025-11-20T18:55:39.041831-05:00"} {"id":"bd-4ec8","title":"Widespread double JSON encoding bug in daemon mode RPC calls","description":"Multiple CLI commands had the same double JSON encoding bug found in bd-1048. All commands that called ResolveID via RPC used string(resp.Data) instead of properly unmarshaling the JSON response. This caused IDs to retain JSON quotes (\"bd-1048\" instead of bd-1048), which then got double-encoded when passed to subsequent RPC calls.\n\nAffected commands:\n- bd show (3 instances)\n- bd dep add/remove/tree (5 instances)\n- bd label add/remove/list (3 instances)\n- bd reopen (1 instance)\n\nRoot cause: resp.Data is json.RawMessage (already JSON-encoded), so string() conversion preserves quotes.\n\nFix: Replace all string(resp.Data) with json.Unmarshal(resp.Data, \u0026id) for proper deserialization.\n\nAll commands now tested and working correctly with daemon mode.","status":"closed","issue_type":"bug","created_at":"2025-11-02T22:33:01.632691-08:00","updated_at":"2025-12-17T23:13:40.533631-08:00","closed_at":"2025-12-17T16:26:05.851197-08:00"} {"id":"bd-4hn","title":"wish: list \u0026 ready show issues as hierarchy tree","description":"`bd ready` and `bd list` just show a flat list, and it's up to the reader to parse which ones are dependent or sub-issues of others. It would be much easier to understand if they were shown in a tree format","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-08T06:38:24.016316945-07:00","updated_at":"2025-12-08T06:39:04.065882225-07:00"} +{"id":"bd-4lm3","title":"Correction: Pinned field already in v0.31.0","description":"Quick correction - the Pinned field is already in the current bd v0.31.0:\n\n```go\n// In beads internal/types/types.go\nPinned bool `json:\"pinned,omitempty\"`\n```\n\nSo you just need to:\n1. Add `Pinned bool `json:\"pinned,omitempty\"`` to BeadsMessage in types.go\n2. Sort pinned messages first in listBeads() after fetching\n\nNo migration needed - the field is already there.\n\n-- Mayor","status":"open","priority":2,"issue_type":"message","assignee":"gastown/crew/max","created_at":"2025-12-20T17:52:27.321458-08:00","updated_at":"2025-12-20T17:52:27.321458-08:00","labels":["from:beads-crew-dave","thread:thread-4dd70157dbc1"]} {"id":"bd-4nqq","title":"Remove dead test code in info_test.go","description":"Code health review found cmd/bd/info_test.go has two tests permanently skipped:\n\n- TestInfoCommand\n- TestInfoCommandNoDaemon\n\nBoth skip with: 'Manual test - bd info command is working, see manual testing'\n\nThese are essentially dead code. Either automate them or remove them entirely.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:27.554019-08:00","updated_at":"2025-12-16T18:17:27.554019-08:00","dependencies":[{"issue_id":"bd-4nqq","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.381694-08:00","created_by":"daemon","metadata":"{}"}]} {"id":"bd-4q8","title":"bd cleanup --hard should skip tombstone creation for true permanent deletion","description":"## Problem\n\nWhen using bd cleanup --hard --older-than N --force, the command:\n1. Deletes closed issues older than N days (converting them to tombstones with NOW timestamp)\n2. Then tries to prune tombstones older than N days (finds none because they were just created)\n\nThis leaves the database bloated with fresh tombstones that will not be pruned.\n\n## Expected Behavior\n\nIn --hard mode, the deletion should be permanent without creating tombstones, since the user explicitly requested bypassing sync safety.\n\n## Workaround\n\nManually delete from database: sqlite3 .beads/beads.db 'DELETE FROM issues WHERE status=tombstone'\n\n## Fix Options\n\n1. In --hard mode, use a different delete path that does not create tombstones\n2. After deleting, immediately prune the just-created tombstones regardless of age\n3. Pass a skip_tombstone flag to the delete operation\n\nOption 1 is cleanest - --hard should mean permanent delete without tombstone.","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T01:33:36.580657-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-4qfb","title":"Improve bd doctor output formatting for better readability","description":"The current bd doctor output is a wall of text that's hard to process. Consider improvements like:\n- Grouping related checks into collapsible sections\n- Using color/bold for section headers\n- Showing only failures/warnings by default with --verbose for full output\n- Better visual hierarchy between major sections\n- Summary line at top (e.g., '24 checks passed, 0 warnings, 0 errors')","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T09:29:27.557578+11:00","updated_at":"2025-12-13T09:29:27.557578+11:00"} @@ -69,6 +70,7 @@ {"id":"bd-8pyn","title":"Version Bump: 0.30.7","description":"Release checklist for version 0.30.7. This molecule ensures all release steps are completed properly.","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-19T22:56:48.648694-08:00","updated_at":"2025-12-20T00:25:59.529183-08:00","closed_at":"2025-12-20T00:25:59.529183-08:00","close_reason":"Version 0.30.7 released successfully - all steps completed"} {"id":"bd-8v2","title":"Add {{version}} to versionChanges in info.go","description":"Add new entry at TOP of versionChanges in cmd/bd/info.go with release notes from CHANGELOG.md. Must do before bump-version.sh --commit.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:00.482846-08:00","updated_at":"2025-12-18T22:45:21.465817-08:00","closed_at":"2025-12-18T22:45:21.465817-08:00","dependencies":[{"issue_id":"bd-8v2","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.496649-08:00","created_by":"daemon"},{"issue_id":"bd-8v2","depends_on_id":"bd-kyo","type":"blocks","created_at":"2025-12-18T22:43:20.69619-08:00","created_by":"daemon"}]} {"id":"bd-90v","title":"bd prime: AI context loading and Claude Code integration","description":"Implement `bd prime` command and Claude Code hooks for context recovery. Hooks work with BOTH MCP server and CLI approaches - they solve the context memory problem (keeping bd workflow fresh after compaction) not the tool access problem (MCP vs CLI).","status":"open","priority":2,"issue_type":"epic","created_at":"2025-11-11T23:31:12.119012-08:00","updated_at":"2025-11-12T00:11:07.743189-08:00"} +{"id":"bd-95k8","title":"Pinned field available in beads v0.37.0","description":"Hey max,\n\nHeads up on your mail overhaul work:\n\n1. **Pinned field is available** - beads v0.37.0 (released by dave earlier) includes the pinned field on issues. You'll want to add this to BeadsMessage in types.go.\n\n2. **Database migration** - Check if existing .beads databases need migration to support the pinned field. Run `bd doctor` to see if it flags anything.\n\n3. **Sorting task** - Once you have the pinned field, gt-ngu1 (pinned beads first in mail inbox) needs implementing. Since messages now come from `bd list --type=message`, you'll need to either:\n - Sort in listBeads() after fetching, or\n - Ensure bd list returns pinned items first (may already do this?)\n\nCheck what version of bd you're building against.\n\n-- Mayor","status":"open","priority":2,"issue_type":"message","assignee":"gastown/crew/max","created_at":"2025-12-20T17:51:57.315956-08:00","updated_at":"2025-12-20T17:51:57.315956-08:00","labels":["from:beads-crew-dave","thread:thread-71ac20c7e432"]} {"id":"bd-9cdc","title":"Update docs for import bug fix","description":"Update AGENTS.md, README.md, TROUBLESHOOTING.md with import.orphan_handling config documentation. Document resurrection behavior, tombstones, config modes. Add troubleshooting section for import failures with deleted parents.","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-04T12:32:30.770415-08:00","updated_at":"2025-11-04T12:32:30.770415-08:00"} {"id":"bd-9g1z","title":"Fix or remove TestFindJSONLPathDefault (issue #356)","description":"Code health review found .test-skip permanently skips TestFindJSONLPathDefault.\n\nThe test references issue #356 about wrong JSONL filename expectations (issues.jsonl vs beads.jsonl).\n\nTest file: internal/beads/beads_test.go\n\nThe underlying migration from beads.jsonl to issues.jsonl may be complete, so either:\n1. Fix the test expectations\n2. Remove the test if no longer needed\n3. Document why it remains skipped","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-16T18:17:31.33975-08:00","updated_at":"2025-12-16T18:17:31.33975-08:00","dependencies":[{"issue_id":"bd-9g1z","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.169617-08:00","created_by":"daemon","metadata":"{}"}]} {"id":"bd-9usz","title":"Test suite hangs/never finishes","description":"Running 'go test ./... -count=1' hangs indefinitely. The full test suite never completes, making it difficult to verify changes. Need to investigate which tests are hanging and fix or add timeouts.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-16T21:56:27.80191-08:00","updated_at":"2025-12-16T21:56:27.80191-08:00"} @@ -139,6 +141,7 @@ {"id":"bd-eyto","title":"Time-dependent tests may be flaky near TTL boundary","description":"Several tombstone merge tests use time.Now() to create test data: time.Now().Add(-24 * time.Hour), time.Now().Add(-60 * 24 * time.Hour), etc. While these work reliably in practice (24h vs 30d TTL has large margin), they could theoretically be flaky if: 1) Tests run slowly, 2) System clock changes during test, 3) TTL constants change. Recommendation: Consider using a fixed reference time or time injection for deterministic tests. Lower priority since current margin is large. Files: internal/merge/merge_test.go:1337-1338, 1352-1353, 1548-1549, 1590-1591","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-05T16:37:02.348143-08:00","updated_at":"2025-12-05T16:37:02.348143-08:00"} {"id":"bd-f3ll","title":"Merge: bd-ot0w","description":"branch: polecat/dementus\ntarget: main\nsource_issue: bd-ot0w\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:20:33.495772-08:00","updated_at":"2025-12-19T23:20:33.495772-08:00"} {"id":"bd-f5cc","title":"Thread Test","description":"Testing the thread feature","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:01.244501-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-f5cc","depends_on_id":"bd-x36g","type":"supersedes","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} +{"id":"bd-fa2h","title":"šŸ¤ HANDOFF: v0.31.0 released, molecules discussion","description":"Session completed 0.31.0 release and had important molecules discussion.\n\n## Completed\n- v0.31.0 released (deferred status, audit trail, directory labels, etc.)\n- Fixed lint issues, hook version markers, codesigning\n- All CI green, artifacts verified\n\n## Filed Issues\n- bd-usro: Rename template instantiate ā†’ bd mol bond\n- bd-y8bj: Auto-detect identity for bd mail (P1 bug)\n- gt-975: Molecule execution support for polecats/crew\n- gt-976: Crew lifecycle support in Deacon\n\n## Key Insight\nMolecules are the future - TodoWrite is ephemeral, molecules are persistent institutional memory on the world chain. I tried to use TodoWrite for version bump and missed steps (codesigning, MCP verification). Molecules would have caught this.\n\n## Next Steps\n- bd mol bond implementation is priority\n- Max has gt-976 for crew lifecycle (enables automated refresh mid-molecule)\n\nCheck bd ready and gt-975/976 status.","status":"open","priority":2,"issue_type":"message","assignee":"beads/crew/dave","created_at":"2025-12-20T17:23:09.889562-08:00","updated_at":"2025-12-20T17:23:09.889562-08:00","sender":"Steve Yegge","ephemeral":true} {"id":"bd-fgw3","title":"Update local installation","description":"Run install script or brew upgrade to get new version locally: curl -fsSL .../install.sh | bash","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:05.052016-08:00","updated_at":"2025-12-20T00:25:52.805029-08:00","closed_at":"2025-12-20T00:25:52.805029-08:00","close_reason":"Local bd updated to 0.30.7","dependencies":[{"issue_id":"bd-fgw3","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.248427-08:00","created_by":"daemon"},{"issue_id":"bd-fgw3","depends_on_id":"bd-si4g","type":"blocks","created_at":"2025-12-19T22:56:23.497325-08:00","created_by":"daemon"}]} {"id":"bd-fi05","title":"bd sync fails with orphaned issues and duplicate ID conflict","description":"After fixing the deleted_at TEXT column scanning bug (commit 18b1eb2), bd sync still fails with two issues:\n\n1. Orphan Detection Warning: 12 orphaned child issues whose parents no longer exist (bd-cb64c226.* and bd-cbed9619.*)\n\n2. Import Failure: UNIQUE constraint failed for bd-360 - this tombstone exists in both DB and JSONL\n\nError: \"Import failed: error creating depth-0 issues: bulk insert issues: failed to insert issue bd-360: sqlite3: constraint failed: UNIQUE constraint failed: issues.id\"\n\nFix options:\n- Delete orphaned child issues with bd delete\n- Resolve bd-360 duplicate (in deletions.jsonl vs tombstone in DB)\n- Reset sync branch: git branch -f beads-sync main \u0026\u0026 git push --force-with-lease origin beads-sync","notes":"Fixed tombstone constraint violation bug. When deleting closed issues, the CHECK constraint (status = 'closed') = (closed_at IS NOT NULL) was violated because CreateTombstone didn't clear closed_at. Fix: set closed_at = NULL in tombstone creation SQL.\n\nThe sync data corruption (orphaned issues in beads-sync branch) requires manual cleanup: reset sync branch with 'git branch -f beads-sync main \u0026\u0026 git push --force-with-lease origin beads-sync'","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-13T07:14:33.831346-08:00","updated_at":"2025-12-13T10:50:48.545465-08:00","closed_at":"2025-12-13T07:30:33.843986-08:00"} {"id":"bd-fom","title":"Remove all deletions.jsonl code except migration","description":"There's deletions manifest code spread across the entire codebase that should have been removed after tombstone migration:\n\nFiles with deletions code (non-migration):\n- internal/deletions/ - entire package\n- cmd/bd/sync.go - 25+ references, auto-compact, sanitize\n- cmd/bd/delete.go - dual-writes to deletions.jsonl\n- internal/importer/importer.go - checks deletions manifest\n- internal/syncbranch/worktree.go - merges deletions.jsonl\n- cmd/bd/doctor/fix/sync.go - cleanupDeletionsManifest\n- cmd/bd/doctor/fix/deletions.go - HydrateDeletionsManifest\n- cmd/bd/integrity.go - checks deletions for data loss\n- cmd/bd/deleted.go - entire command\n- cmd/bd/compact.go - pruneDeletionsManifest\n- cmd/bd/doctor.go - checkDeletionsManifest\n- Plus many more\n\nAction: Aggressively remove all non-migration deletions code. Tombstones are the only deletion mechanism now.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T13:29:04.960863-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} @@ -290,6 +293,7 @@ {"id":"bd-xj2e","title":"GH#522: Add --type flag to bd update command","description":"Add --type flag to bd update for changing issue type (task/epic/bug/feature). Storage layer already supports it. See GitHub issue #522.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:12.506583-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-y2v","title":"Refactor duplicate JSONL-from-git parsing code","description":"Both readFirstIssueFromGit() in init.go and importFromGit() in autoimport.go have similar code patterns for:\n1. Running git show \u003cref\u003e:\u003cpath\u003e\n2. Scanning the output with bufio.Scanner\n3. Parsing JSON lines\n\nCould be refactored to share a helper like:\n- readJSONLFromGit(gitRef, path string) ([]byte, error)\n- Or a streaming version: streamJSONLFromGit(gitRef, path string) (io.Reader, error)\n\nFiles:\n- cmd/bd/autoimport.go:225-256 (importFromGit)\n- cmd/bd/init.go:1212-1243 (readFirstIssueFromGit)\n\nPriority is low since code duplication is minimal and both functions work correctly.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-05T14:51:18.41124-08:00","updated_at":"2025-12-05T14:51:18.41124-08:00"} {"id":"bd-y4vz","title":"Work on beads-eub: Consolidated context tool for MCP serv...","description":"Work on beads-eub: Consolidated context tool for MCP server (GH#636). Merge set_context, where_am_i, init into single 'context' tool. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:58.527144-08:00","updated_at":"2025-12-20T00:26:12.607357-08:00","closed_at":"2025-12-19T23:31:11.906952-08:00"} +{"id":"bd-y8bj","title":"Auto-detect identity from directory context for bd mail","description":"Currently bd mail inbox defaults to git user name, requiring --identity flag with exact format.\n\n## Problem\n- Mail sent to `gastown/crew/max`\n- Max runs `bd mail inbox` ā†’ defaults to 'Steve Yegge' (git user)\n- Max must know to use `--identity 'gastown/crew/max'` with exact slashes\n\n## Proposed Fix\nAuto-detect identity from directory context when in a Gas Town workspace:\n- In `/Users/stevey/gt/gastown/crew/max`, infer identity = `gastown/crew/max`\n- Pattern: `\u003ctown\u003e/\u003crig\u003e/\u003crole\u003e/\u003cname\u003e` ā†’ `\u003crig\u003e/\u003crole\u003e/\u003cname\u003e`\n\n## Additional Improvements\n1. Support GT_IDENTITY env var (set by gt crew at / session spawning)\n2. Support identity in .beads/config.yaml\n3. Normalize format: accept both slashes and dashes as equivalent\n\n## Context\nDiscovered during crew-to-crew work assignment. Max couldn't see mail despite correct nudge because identity defaulted wrong.","status":"open","priority":1,"issue_type":"bug","created_at":"2025-12-20T17:22:53.938586-08:00","updated_at":"2025-12-20T17:22:53.938586-08:00"} {"id":"bd-y8tn","title":"Test Molecule","description":"A test molecule","status":"closed","priority":2,"issue_type":"molecule","created_at":"2025-12-19T18:30:24.491279-08:00","updated_at":"2025-12-19T18:31:12.49898-08:00","closed_at":"2025-12-19T18:31:12.49898-08:00","close_reason":"test molecule - deleting"} {"id":"bd-yck","title":"Fix checkExistingBeadsData to be worktree-aware","description":"The checkExistingBeadsData function in cmd/bd/init.go checks for .beads in the current working directory, but for worktrees it should check the main repository root instead. This prevents proper worktree compatibility.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-07T16:48:32.082776345-07:00","updated_at":"2025-12-07T16:48:32.082776345-07:00"} {"id":"bd-ykd9","title":"Add bd doctor --fix flag to automatically repair issues","description":"Implement a --fix flag for bd doctor that can automatically repair detected issues.\n\nRequirements:\n- Add --fix flag to bd doctor command\n- Show all fixable issues and prompt for confirmation before applying fixes\n- Organize fix implementations under doctor/fix/\u003ctype_of_fix\u003e.go\n- Each fix type should have its own file (e.g., doctor/fix/hooks.go, doctor/fix/sync.go)\n- Display what will be fixed and ask user to confirm (Y/n) before proceeding\n- Support fixing issues like:\n - Missing or broken git hooks\n - Sync problems with remote\n - File permission issues\n - Any other auto-repairable issues doctor detects\n\nImplementation notes:\n- Maintain separation between detection (existing doctor code) and repair (new fix code)\n- Each fix should be idempotent and safe to run multiple times\n- Provide clear output about what was fixed\n- Log any fixes that fail with actionable error messages","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-14T18:17:48.411264-08:00","updated_at":"2025-11-14T18:17:58.88609-08:00"} diff --git a/CLAUDE.md b/CLAUDE.md index df878195..74a12177 100644 --- a/CLAUDE.md +++ b/CLAUDE.md @@ -19,7 +19,7 @@ the overseer, not as part of a swarm. **Your mail address:** `beads/dave` -Check your mail with: `bd mail inbox --identity beads-dave` +Check your mail with: `gt mail inbox` (mail is handled by Gas Town, not beads) ## Gas Town Architecture @@ -38,7 +38,7 @@ Town (/Users/stevey/gt) ## Key Commands ### Finding Work -- `bd mail inbox --identity beads-dave` - Check your inbox +- `gt mail inbox` - Check your inbox (mail is in Gas Town) - `bd ready` - Available issues - `bd list --status=in_progress` - Your active work @@ -49,8 +49,8 @@ Town (/Users/stevey/gt) - `bd sync` - Sync beads changes ### Communication -- `bd mail send mayor -s "Subject" -m "Message"` - To Mayor -- `bd mail send beads-dave -s "Subject" -m "Message"` - To yourself (handoff) +- `gt mail send mayor/ -s "Subject" -m "Message"` - To Mayor +- `gt mail send beads/dave -s "Subject" -m "Message"` - To yourself (handoff) ## Beads Database @@ -361,47 +361,6 @@ bd create "Add feature" -t feature --json # What feature? Why needed? bd create "Refactor code" -t task --json # What code? Why refactor? ``` -### Inter-Agent Messaging (bd mail) - -Beads includes a built-in messaging system for direct agent-to-agent communication. Messages are stored as beads issues, synced via git. - -**Setup:** - -```bash -# Set your identity (add to environment or .beads/config.json) -export BEADS_IDENTITY="worker-1" -``` - -**Commands:** - -```bash -# Send a message -bd mail send -s "Subject" -m "Body" -bd mail send worker-2 -s "Handoff" -m "Your turn on bd-xyz" --urgent - -# Check your inbox -bd mail inbox - -# Read a specific message -bd mail read bd-a1b2 - -# Acknowledge (mark as read/close) -bd mail ack bd-a1b2 - -# Reply to a message (creates thread) -bd mail reply bd-a1b2 -m "Thanks, on it!" -``` - -**Use cases:** -- Task handoffs between agents -- Status updates to coordinator -- Blocking questions requiring response -- Priority signaling with `--urgent` flag - -**Cleanup:** Messages are ephemeral. Run `bd cleanup --ephemeral --force` to delete closed messages. - -See [docs/messaging.md](docs/messaging.md) for full documentation. - ### Deletion Tracking When issues are deleted (via `bd delete` or `bd cleanup`), they are recorded in `.beads/deletions.jsonl`. This manifest: diff --git a/cmd/bd/mail.go b/cmd/bd/mail.go deleted file mode 100644 index 418d074f..00000000 --- a/cmd/bd/mail.go +++ /dev/null @@ -1,727 +0,0 @@ -package main - -import ( - "encoding/json" - "fmt" - "os" - "strings" - "time" - - "github.com/spf13/cobra" - "github.com/steveyegge/beads/internal/config" - "github.com/steveyegge/beads/internal/hooks" - "github.com/steveyegge/beads/internal/rpc" - "github.com/steveyegge/beads/internal/types" -) - -var mailCmd = &cobra.Command{ - Use: "mail", - Short: "Send and receive messages via beads", - Long: `Send and receive messages between agents using beads storage. - -Messages are stored as issues with type=message, enabling git-native -inter-agent communication without external services. - -Examples: - bd mail send worker-1 -s "Task complete" -m "Finished bd-xyz" - bd mail inbox - bd mail read bd-abc123 - bd mail ack bd-abc123`, -} - -var mailSendCmd = &cobra.Command{ - Use: "send -s -m ", - Short: "Send a message to another agent", - Long: `Send a message to another agent via beads. - -Creates an issue with type=message, sender=your identity, assignee=recipient. -The --urgent flag sets priority=0. Use --priority for explicit priority control. - -Priority levels: 0=critical/urgent, 1=high, 2=normal (default), 3=low, 4=backlog - -Examples: - bd mail send worker-1 -s "Task complete" -m "Finished bd-xyz" - bd mail send worker-1 -s "Help needed" -m "Blocked on auth" --urgent - bd mail send worker-1 -s "Quick note" -m "FYI" --priority 3 - bd mail send worker-1 -s "Task" -m "Do this" --type task --priority 1 - bd mail send worker-1 -s "Re: Hello" -m "Hi back" --reply-to bd-abc123 - bd mail send worker-1 -s "Quick note" -m "FYI" --identity refinery`, - Args: cobra.ExactArgs(1), - RunE: runMailSend, -} - -var mailInboxCmd = &cobra.Command{ - Use: "inbox", - Short: "List messages addressed to you", - Long: `List open messages where assignee matches your identity. - -Messages are sorted by priority (urgent first), then by date (newest first). - -Examples: - bd mail inbox - bd mail inbox --from worker-1 - bd mail inbox --priority 0`, - RunE: runMailInbox, -} - -var mailReadCmd = &cobra.Command{ - Use: "read ", - Short: "Read a specific message", - Long: `Display the full content of a message. - -Does NOT mark the message as read - use 'bd mail ack' for that. - -Example: - bd mail read bd-abc123`, - Args: cobra.ExactArgs(1), - RunE: runMailRead, -} - -var mailAckCmd = &cobra.Command{ - Use: "ack [id2...]", - Short: "Acknowledge (close) messages", - Long: `Mark messages as read by closing them. - -Can acknowledge multiple messages at once. - -Examples: - bd mail ack bd-abc123 - bd mail ack bd-abc123 bd-def456 bd-ghi789`, - Args: cobra.MinimumNArgs(1), - RunE: runMailAck, -} - -var mailReplyCmd = &cobra.Command{ - Use: "reply -m ", - Short: "Reply to a message", - Long: `Reply to an existing message, creating a conversation thread. - -Creates a new message with replies_to set to the original message, -and sends it to the original sender. - -Examples: - bd mail reply bd-abc123 -m "Thanks for the update!" - bd mail reply bd-abc123 -m "Done" --urgent`, - Args: cobra.ExactArgs(1), - RunE: runMailReply, -} - -// Mail command flags -var ( - mailSubject string - mailBody string - mailUrgent bool - mailIdentity string - mailFrom string - mailPriorityFlag int - // New flags for GGT compatibility (gt-8j8e) - mailSendPriority int // Numeric priority for mail send (0-4) - mailMsgType string // Message type (task, scavenge, notification, reply) - mailThreadID string // Thread ID for conversation grouping - mailReplyTo string // Message ID being replied to -) - -func init() { - rootCmd.AddCommand(mailCmd) - mailCmd.AddCommand(mailSendCmd) - mailCmd.AddCommand(mailInboxCmd) - mailCmd.AddCommand(mailReadCmd) - mailCmd.AddCommand(mailAckCmd) - mailCmd.AddCommand(mailReplyCmd) - - // Send command flags - mailSendCmd.Flags().StringVarP(&mailSubject, "subject", "s", "", "Message subject (required)") - mailSendCmd.Flags().StringVarP(&mailBody, "body", "m", "", "Message body (required)") - mailSendCmd.Flags().BoolVar(&mailUrgent, "urgent", false, "Set priority=0 (urgent)") - mailSendCmd.Flags().StringVar(&mailIdentity, "identity", "", "Override sender identity") - // GGT compatibility flags (gt-8j8e) - mailSendCmd.Flags().IntVar(&mailSendPriority, "priority", -1, "Message priority (0-4, where 0=urgent)") - mailSendCmd.Flags().StringVar(&mailMsgType, "type", "", "Message type (task, scavenge, notification, reply)") - mailSendCmd.Flags().StringVar(&mailThreadID, "thread-id", "", "Thread ID for conversation grouping") - mailSendCmd.Flags().StringVar(&mailReplyTo, "reply-to", "", "Message ID this is replying to") - _ = mailSendCmd.MarkFlagRequired("subject") - _ = mailSendCmd.MarkFlagRequired("body") - - // Inbox command flags - mailInboxCmd.Flags().StringVar(&mailFrom, "from", "", "Filter by sender") - mailInboxCmd.Flags().IntVar(&mailPriorityFlag, "priority", -1, "Filter by priority (0-4)") - mailInboxCmd.Flags().StringVar(&mailIdentity, "identity", "", "Override recipient identity") - - // Read command flags - mailReadCmd.Flags().StringVar(&mailIdentity, "identity", "", "Override identity for access check") - - // Ack command flags - mailAckCmd.Flags().StringVar(&mailIdentity, "identity", "", "Override identity") - - // Reply command flags - mailReplyCmd.Flags().StringVarP(&mailBody, "body", "m", "", "Reply body (required)") - mailReplyCmd.Flags().BoolVar(&mailUrgent, "urgent", false, "Set priority=0 (urgent)") - mailReplyCmd.Flags().StringVar(&mailIdentity, "identity", "", "Override sender identity") - _ = mailReplyCmd.MarkFlagRequired("body") -} - -func runMailSend(cmd *cobra.Command, args []string) error { - CheckReadonly("mail send") - - recipient := args[0] - sender := config.GetIdentity(mailIdentity) - - // Determine priority (gt-8j8e: --priority takes precedence over --urgent) - priority := 2 // default: normal - if cmd.Flags().Changed("priority") && mailSendPriority >= 0 && mailSendPriority <= 4 { - priority = mailSendPriority - } else if mailUrgent { - priority = 0 - } - - // Build labels for GGT metadata (gt-8j8e) - var labels []string - if mailMsgType != "" { - labels = append(labels, "msg-type:"+mailMsgType) - } - if mailThreadID != "" { - labels = append(labels, "thread:"+mailThreadID) - } - - // If daemon is running, use RPC - if daemonClient != nil { - createArgs := &rpc.CreateArgs{ - Title: mailSubject, - Description: mailBody, - IssueType: string(types.TypeMessage), - Priority: priority, - Assignee: recipient, - Sender: sender, - Ephemeral: true, // Messages can be bulk-deleted - Labels: labels, - RepliesTo: mailReplyTo, // Thread link (gt-8j8e) - } - - resp, err := daemonClient.Create(createArgs) - if err != nil { - return fmt.Errorf("failed to send message: %w", err) - } - - // Parse response to get issue ID - var issue types.Issue - if err := json.Unmarshal(resp.Data, &issue); err != nil { - return fmt.Errorf("parsing response: %w", err) - } - - // Run message hook (bd-kwro.8) - if hookRunner != nil { - hookRunner.Run(hooks.EventMessage, &issue) - } - - if jsonOutput { - result := map[string]interface{}{ - "id": issue.ID, - "to": recipient, - "from": sender, - "subject": mailSubject, - "priority": priority, - "timestamp": issue.CreatedAt, - } - encoder := json.NewEncoder(os.Stdout) - encoder.SetIndent("", " ") - return encoder.Encode(result) - } - - fmt.Printf("Message sent: %s\n", issue.ID) - fmt.Printf(" To: %s\n", recipient) - fmt.Printf(" Subject: %s\n", mailSubject) - if priority <= 1 { - fmt.Printf(" Priority: P%d\n", priority) - } - return nil - } - - // Direct mode - now := time.Now() - issue := &types.Issue{ - Title: mailSubject, - Description: mailBody, - Status: types.StatusOpen, - Priority: priority, - IssueType: types.TypeMessage, - Assignee: recipient, - Sender: sender, - Ephemeral: true, // Messages can be bulk-deleted - Labels: labels, - CreatedAt: now, - UpdatedAt: now, - } - - if err := store.CreateIssue(rootCtx, issue, actor); err != nil { - return fmt.Errorf("failed to send message: %w", err) - } - - // Add reply-to dependency if specified (gt-8j8e) - if mailReplyTo != "" { - dep := &types.Dependency{ - IssueID: issue.ID, - DependsOnID: mailReplyTo, - Type: types.DepRepliesTo, - CreatedAt: now, - CreatedBy: actor, - } - if err := store.AddDependency(rootCtx, dep, actor); err != nil { - // Log but don't fail - the message was still sent - fmt.Fprintf(os.Stderr, "Warning: failed to create reply-to link: %v\n", err) - } - } - - // Trigger auto-flush - if flushManager != nil { - flushManager.MarkDirty(false) - } - - // Run message hook (bd-kwro.8) - if hookRunner != nil { - hookRunner.Run(hooks.EventMessage, issue) - } - - if jsonOutput { - result := map[string]interface{}{ - "id": issue.ID, - "to": recipient, - "from": sender, - "subject": mailSubject, - "priority": priority, - "timestamp": issue.CreatedAt, - } - encoder := json.NewEncoder(os.Stdout) - encoder.SetIndent("", " ") - return encoder.Encode(result) - } - - fmt.Printf("Message sent: %s\n", issue.ID) - fmt.Printf(" To: %s\n", recipient) - fmt.Printf(" Subject: %s\n", mailSubject) - if priority <= 1 { - fmt.Printf(" Priority: P%d\n", priority) - } - - return nil -} - -func runMailInbox(cmd *cobra.Command, args []string) error { - identity := config.GetIdentity(mailIdentity) - - // Query for open messages assigned to this identity - messageType := types.TypeMessage - openStatus := types.StatusOpen - filter := types.IssueFilter{ - IssueType: &messageType, - Status: &openStatus, - Assignee: &identity, - } - - var issues []*types.Issue - var err error - - if daemonClient != nil { - // Daemon mode - use RPC list - resp, rpcErr := daemonClient.List(&rpc.ListArgs{ - Status: string(openStatus), - IssueType: string(messageType), - Assignee: identity, - }) - if rpcErr != nil { - return fmt.Errorf("failed to fetch inbox: %w", rpcErr) - } - if err := json.Unmarshal(resp.Data, &issues); err != nil { - return fmt.Errorf("parsing response: %w", err) - } - } else { - // Direct mode - issues, err = store.SearchIssues(rootCtx, "", filter) - if err != nil { - return fmt.Errorf("failed to fetch inbox: %w", err) - } - } - - // Filter by sender if specified - var filtered []*types.Issue - for _, issue := range issues { - if mailFrom != "" && issue.Sender != mailFrom { - continue - } - // Filter by priority if specified - if cmd.Flags().Changed("priority") && mailPriorityFlag >= 0 && issue.Priority != mailPriorityFlag { - continue - } - filtered = append(filtered, issue) - } - - // Sort by priority (ascending), then by date (descending) - // Priority 0 is highest priority - for i := 0; i < len(filtered)-1; i++ { - for j := i + 1; j < len(filtered); j++ { - swap := false - if filtered[i].Priority > filtered[j].Priority { - swap = true - } else if filtered[i].Priority == filtered[j].Priority { - if filtered[i].CreatedAt.Before(filtered[j].CreatedAt) { - swap = true - } - } - if swap { - filtered[i], filtered[j] = filtered[j], filtered[i] - } - } - } - - if jsonOutput { - encoder := json.NewEncoder(os.Stdout) - encoder.SetIndent("", " ") - return encoder.Encode(filtered) - } - - if len(filtered) == 0 { - fmt.Printf("No messages for %s\n", identity) - return nil - } - - fmt.Printf("Inbox for %s (%d messages):\n\n", identity, len(filtered)) - for _, msg := range filtered { - // Format timestamp - age := time.Since(msg.CreatedAt) - var timeStr string - if age < time.Hour { - timeStr = fmt.Sprintf("%dm ago", int(age.Minutes())) - } else if age < 24*time.Hour { - timeStr = fmt.Sprintf("%dh ago", int(age.Hours())) - } else { - timeStr = fmt.Sprintf("%dd ago", int(age.Hours()/24)) - } - - // Priority indicator - priorityStr := "" - if msg.Priority == 0 { - priorityStr = " [URGENT]" - } else if msg.Priority == 1 { - priorityStr = " [HIGH]" - } - - fmt.Printf(" %s: %s%s\n", msg.ID, msg.Title, priorityStr) - fmt.Printf(" From: %s (%s)\n", msg.Sender, timeStr) - // NOTE: Thread info now in dependencies (Decision 004) - fmt.Println() - } - - return nil -} - -func runMailRead(cmd *cobra.Command, args []string) error { - messageID := args[0] - - var issue *types.Issue - - if daemonClient != nil { - // Daemon mode - use RPC show - resp, err := daemonClient.Show(&rpc.ShowArgs{ID: messageID}) - if err != nil { - return fmt.Errorf("failed to read message: %w", err) - } - if err := json.Unmarshal(resp.Data, &issue); err != nil { - return fmt.Errorf("parsing response: %w", err) - } - } else { - // Direct mode - var err error - issue, err = store.GetIssue(rootCtx, messageID) - if err != nil { - return fmt.Errorf("failed to read message: %w", err) - } - } - - if issue == nil { - return fmt.Errorf("message not found: %s", messageID) - } - - if issue.IssueType != types.TypeMessage { - return fmt.Errorf("%s is not a message (type: %s)", messageID, issue.IssueType) - } - - if jsonOutput { - encoder := json.NewEncoder(os.Stdout) - encoder.SetIndent("", " ") - return encoder.Encode(issue) - } - - // Display message - fmt.Println(strings.Repeat("ā”€", 66)) - fmt.Printf("ID: %s\n", issue.ID) - fmt.Printf("From: %s\n", issue.Sender) - fmt.Printf("To: %s\n", issue.Assignee) - fmt.Printf("Subject: %s\n", issue.Title) - fmt.Printf("Time: %s\n", issue.CreatedAt.Format("2006-01-02 15:04:05")) - if issue.Priority <= 1 { - fmt.Printf("Priority: P%d\n", issue.Priority) - } - // NOTE: Thread info (RepliesTo) now in dependencies (Decision 004) - fmt.Printf("Status: %s\n", issue.Status) - fmt.Println(strings.Repeat("ā”€", 66)) - fmt.Println() - fmt.Println(issue.Description) - fmt.Println() - - return nil -} - -func runMailAck(cmd *cobra.Command, args []string) error { - CheckReadonly("mail ack") - - var acked []string - var errors []string - - for _, messageID := range args { - var issue *types.Issue - - if daemonClient != nil { - // Daemon mode - use RPC - resp, err := daemonClient.Show(&rpc.ShowArgs{ID: messageID}) - if err != nil { - errors = append(errors, fmt.Sprintf("%s: %v", messageID, err)) - continue - } - if err := json.Unmarshal(resp.Data, &issue); err != nil { - errors = append(errors, fmt.Sprintf("%s: parse error: %v", messageID, err)) - continue - } - } else { - // Direct mode - var err error - issue, err = store.GetIssue(rootCtx, messageID) - if err != nil { - errors = append(errors, fmt.Sprintf("%s: %v", messageID, err)) - continue - } - } - - if issue == nil { - errors = append(errors, fmt.Sprintf("%s: not found", messageID)) - continue - } - - if issue.IssueType != types.TypeMessage { - errors = append(errors, fmt.Sprintf("%s: not a message (type: %s)", messageID, issue.IssueType)) - continue - } - - if issue.Status == types.StatusClosed { - errors = append(errors, fmt.Sprintf("%s: already acknowledged", messageID)) - continue - } - - // Close the message - if daemonClient != nil { - // Daemon mode - use RPC close - _, err := daemonClient.CloseIssue(&rpc.CloseArgs{ID: messageID}) - if err != nil { - errors = append(errors, fmt.Sprintf("%s: %v", messageID, err)) - continue - } - // Fire close hook for GGT notifications (daemon mode) - if hookRunner != nil { - hookRunner.Run(hooks.EventClose, issue) - } - } else { - // Direct mode - use CloseIssue for proper close handling - if err := store.CloseIssue(rootCtx, messageID, "acknowledged", actor); err != nil { - errors = append(errors, fmt.Sprintf("%s: %v", messageID, err)) - continue - } - // Fire close hook for GGT notifications (direct mode) - if hookRunner != nil { - hookRunner.Run(hooks.EventClose, issue) - } - } - - acked = append(acked, messageID) - } - - // Trigger auto-flush if any messages were acked (direct mode only) - if len(acked) > 0 && flushManager != nil { - flushManager.MarkDirty(false) - } - - if jsonOutput { - result := map[string]interface{}{ - "acknowledged": acked, - "errors": errors, - } - encoder := json.NewEncoder(os.Stdout) - encoder.SetIndent("", " ") - return encoder.Encode(result) - } - - for _, id := range acked { - fmt.Printf("Acknowledged: %s\n", id) - } - for _, errMsg := range errors { - fmt.Fprintf(os.Stderr, "Error: %s\n", errMsg) - } - - if len(errors) > 0 && len(acked) == 0 { - return fmt.Errorf("failed to acknowledge any messages") - } - - return nil -} - -func runMailReply(cmd *cobra.Command, args []string) error { - CheckReadonly("mail reply") - - messageID := args[0] - sender := config.GetIdentity(mailIdentity) - - // Get the original message - var originalMsg *types.Issue - - if daemonClient != nil { - resp, err := daemonClient.Show(&rpc.ShowArgs{ID: messageID}) - if err != nil { - return fmt.Errorf("failed to get original message: %w", err) - } - if err := json.Unmarshal(resp.Data, &originalMsg); err != nil { - return fmt.Errorf("parsing response: %w", err) - } - } else { - var err error - originalMsg, err = store.GetIssue(rootCtx, messageID) - if err != nil { - return fmt.Errorf("failed to get original message: %w", err) - } - } - - if originalMsg == nil { - return fmt.Errorf("message not found: %s", messageID) - } - - if originalMsg.IssueType != types.TypeMessage { - return fmt.Errorf("%s is not a message (type: %s)", messageID, originalMsg.IssueType) - } - - // Determine recipient: reply goes to the original sender - recipient := originalMsg.Sender - if recipient == "" { - return fmt.Errorf("original message has no sender, cannot determine reply recipient") - } - - // Build reply subject - subject := originalMsg.Title - if !strings.HasPrefix(strings.ToLower(subject), "re:") { - subject = "Re: " + subject - } - - // Determine priority - priority := 2 // default: normal - if mailUrgent { - priority = 0 - } - - // Create the reply message - now := time.Now() - reply := &types.Issue{ - Title: subject, - Description: mailBody, - Status: types.StatusOpen, - Priority: priority, - IssueType: types.TypeMessage, - Assignee: recipient, - Sender: sender, - Ephemeral: true, - // NOTE: RepliesTo now handled via dependency API (Decision 004) - CreatedAt: now, - UpdatedAt: now, - } - _ = messageID // RepliesTo handled via CreateArgs.RepliesTo -> server creates dependency - - if daemonClient != nil { - // Daemon mode - create reply with all messaging fields - createArgs := &rpc.CreateArgs{ - Title: reply.Title, - Description: reply.Description, - IssueType: string(types.TypeMessage), - Priority: priority, - Assignee: recipient, - Sender: sender, - Ephemeral: true, - RepliesTo: messageID, // Thread link - } - - resp, err := daemonClient.Create(createArgs) - if err != nil { - return fmt.Errorf("failed to send reply: %w", err) - } - - var createdIssue types.Issue - if err := json.Unmarshal(resp.Data, &createdIssue); err != nil { - return fmt.Errorf("parsing response: %w", err) - } - - if jsonOutput { - result := map[string]interface{}{ - "id": createdIssue.ID, - "to": recipient, - "from": sender, - "subject": subject, - "replies_to": messageID, - "priority": priority, - "timestamp": createdIssue.CreatedAt, - } - encoder := json.NewEncoder(os.Stdout) - encoder.SetIndent("", " ") - return encoder.Encode(result) - } - - fmt.Printf("Reply sent: %s\n", createdIssue.ID) - fmt.Printf(" To: %s\n", recipient) - fmt.Printf(" Re: %s\n", messageID) - if mailUrgent { - fmt.Printf(" Priority: URGENT\n") - } - return nil - } - - // Direct mode - if err := store.CreateIssue(rootCtx, reply, actor); err != nil { - return fmt.Errorf("failed to send reply: %w", err) - } - - // Trigger auto-flush - if flushManager != nil { - flushManager.MarkDirty(false) - } - - // Fire message hook for GGT notifications - if hookRunner != nil { - hookRunner.Run(hooks.EventMessage, reply) - } - - if jsonOutput { - result := map[string]interface{}{ - "id": reply.ID, - "to": recipient, - "from": sender, - "subject": subject, - "replies_to": messageID, - "priority": priority, - "timestamp": reply.CreatedAt, - } - encoder := json.NewEncoder(os.Stdout) - encoder.SetIndent("", " ") - return encoder.Encode(result) - } - - fmt.Printf("Reply sent: %s\n", reply.ID) - fmt.Printf(" To: %s\n", recipient) - fmt.Printf(" Re: %s\n", messageID) - if mailUrgent { - fmt.Printf(" Priority: URGENT\n") - } - - return nil -} diff --git a/cmd/bd/mail_test.go b/cmd/bd/mail_test.go deleted file mode 100644 index 1986d44e..00000000 --- a/cmd/bd/mail_test.go +++ /dev/null @@ -1,392 +0,0 @@ -package main - -import ( - "context" - "testing" - "time" - - "github.com/steveyegge/beads/internal/types" -) - -func TestMailSendAndInbox(t *testing.T) { - tmpDir := t.TempDir() - testStore := newTestStore(t, tmpDir+"/.beads/beads.db") - ctx := context.Background() - - // Set up global state - oldStore := store - oldRootCtx := rootCtx - oldActor := actor - store = testStore - rootCtx = ctx - actor = "test-user" - defer func() { - store = oldStore - rootCtx = oldRootCtx - actor = oldActor - }() - - // Create a message (simulating mail send) - now := time.Now() - msg := &types.Issue{ - Title: "Test Subject", - Description: "Test message body", - Status: types.StatusOpen, - Priority: 2, - IssueType: types.TypeMessage, - Assignee: "worker-1", - Sender: "manager", - Ephemeral: true, - CreatedAt: now, - UpdatedAt: now, - } - - if err := testStore.CreateIssue(ctx, msg, actor); err != nil { - t.Fatalf("Failed to create message: %v", err) - } - - // Query inbox for worker-1 - messageType := types.TypeMessage - openStatus := types.StatusOpen - assignee := "worker-1" - filter := types.IssueFilter{ - IssueType: &messageType, - Status: &openStatus, - Assignee: &assignee, - } - - messages, err := testStore.SearchIssues(ctx, "", filter) - if err != nil { - t.Fatalf("SearchIssues failed: %v", err) - } - - if len(messages) != 1 { - t.Fatalf("Expected 1 message, got %d", len(messages)) - } - - if messages[0].Title != "Test Subject" { - t.Errorf("Title = %q, want %q", messages[0].Title, "Test Subject") - } - if messages[0].Sender != "manager" { - t.Errorf("Sender = %q, want %q", messages[0].Sender, "manager") - } - if !messages[0].Ephemeral { - t.Error("Ephemeral should be true") - } -} - -func TestMailInboxEmpty(t *testing.T) { - tmpDir := t.TempDir() - testStore := newTestStore(t, tmpDir+"/.beads/beads.db") - ctx := context.Background() - - // Query inbox for non-existent user - messageType := types.TypeMessage - openStatus := types.StatusOpen - assignee := "nobody" - filter := types.IssueFilter{ - IssueType: &messageType, - Status: &openStatus, - Assignee: &assignee, - } - - messages, err := testStore.SearchIssues(ctx, "", filter) - if err != nil { - t.Fatalf("SearchIssues failed: %v", err) - } - - if len(messages) != 0 { - t.Errorf("Expected 0 messages, got %d", len(messages)) - } -} - -func TestMailAck(t *testing.T) { - tmpDir := t.TempDir() - testStore := newTestStore(t, tmpDir+"/.beads/beads.db") - ctx := context.Background() - - // Create a message - now := time.Now() - msg := &types.Issue{ - Title: "Ack Test", - Description: "Test body", - Status: types.StatusOpen, - Priority: 2, - IssueType: types.TypeMessage, - Assignee: "recipient", - Sender: "sender", - Ephemeral: true, - CreatedAt: now, - UpdatedAt: now, - } - - if err := testStore.CreateIssue(ctx, msg, "test"); err != nil { - t.Fatalf("Failed to create message: %v", err) - } - - // Acknowledge (close) the message - if err := testStore.CloseIssue(ctx, msg.ID, "acknowledged", "test"); err != nil { - t.Fatalf("Failed to close message: %v", err) - } - - // Verify it's closed - updated, err := testStore.GetIssue(ctx, msg.ID) - if err != nil { - t.Fatalf("GetIssue failed: %v", err) - } - - if updated.Status != types.StatusClosed { - t.Errorf("Status = %q, want %q", updated.Status, types.StatusClosed) - } - - // Verify it no longer appears in inbox - messageType := types.TypeMessage - openStatus := types.StatusOpen - assignee := "recipient" - filter := types.IssueFilter{ - IssueType: &messageType, - Status: &openStatus, - Assignee: &assignee, - } - - messages, err := testStore.SearchIssues(ctx, "", filter) - if err != nil { - t.Fatalf("SearchIssues failed: %v", err) - } - - if len(messages) != 0 { - t.Errorf("Expected 0 messages in inbox after ack, got %d", len(messages)) - } -} - -func TestMailReply(t *testing.T) { - tmpDir := t.TempDir() - testStore := newTestStore(t, tmpDir+"/.beads/beads.db") - ctx := context.Background() - - // Create original message - now := time.Now() - original := &types.Issue{ - Title: "Original Subject", - Description: "Original body", - Status: types.StatusOpen, - Priority: 2, - IssueType: types.TypeMessage, - Assignee: "worker", - Sender: "manager", - Ephemeral: true, - CreatedAt: now, - UpdatedAt: now, - } - - if err := testStore.CreateIssue(ctx, original, "test"); err != nil { - t.Fatalf("Failed to create original message: %v", err) - } - - // Create reply (thread link now done via dependencies per Decision 004) - reply := &types.Issue{ - Title: "Re: Original Subject", - Description: "Reply body", - Status: types.StatusOpen, - Priority: 2, - IssueType: types.TypeMessage, - Assignee: "manager", // Reply goes to original sender - Sender: "worker", - Ephemeral: true, - CreatedAt: now.Add(time.Minute), - UpdatedAt: now.Add(time.Minute), - } - - if err := testStore.CreateIssue(ctx, reply, "test"); err != nil { - t.Fatalf("Failed to create reply: %v", err) - } - - // Add replies-to dependency (thread link per Decision 004) - dep := &types.Dependency{ - IssueID: reply.ID, - DependsOnID: original.ID, - Type: types.DepRepliesTo, - } - if err := testStore.AddDependency(ctx, dep, "test"); err != nil { - t.Fatalf("Failed to add replies-to dependency: %v", err) - } - - // Verify reply has correct thread link via dependencies - deps, err := testStore.GetDependenciesWithMetadata(ctx, reply.ID) - if err != nil { - t.Fatalf("GetDependenciesWithMetadata failed: %v", err) - } - - var foundReplyLink bool - for _, d := range deps { - if d.DependencyType == types.DepRepliesTo && d.ID == original.ID { - foundReplyLink = true - break - } - } - if !foundReplyLink { - t.Errorf("Reply missing replies-to link to original message") - } -} - -func TestMailPriority(t *testing.T) { - tmpDir := t.TempDir() - testStore := newTestStore(t, tmpDir+"/.beads/beads.db") - ctx := context.Background() - - // Create messages with different priorities - now := time.Now() - messages := []struct { - title string - priority int - }{ - {"Normal message", 2}, - {"Urgent message", 0}, - {"High priority", 1}, - } - - for i, m := range messages { - msg := &types.Issue{ - Title: m.title, - Description: "Body", - Status: types.StatusOpen, - Priority: m.priority, - IssueType: types.TypeMessage, - Assignee: "inbox", - Sender: "sender", - Ephemeral: true, - CreatedAt: now.Add(time.Duration(i) * time.Minute), - UpdatedAt: now.Add(time.Duration(i) * time.Minute), - } - if err := testStore.CreateIssue(ctx, msg, "test"); err != nil { - t.Fatalf("Failed to create message %d: %v", i, err) - } - } - - // Query all messages - messageType := types.TypeMessage - openStatus := types.StatusOpen - assignee := "inbox" - filter := types.IssueFilter{ - IssueType: &messageType, - Status: &openStatus, - Assignee: &assignee, - } - - results, err := testStore.SearchIssues(ctx, "", filter) - if err != nil { - t.Fatalf("SearchIssues failed: %v", err) - } - - if len(results) != 3 { - t.Fatalf("Expected 3 messages, got %d", len(results)) - } - - // Verify we can filter by priority - urgentPriority := 0 - urgentFilter := types.IssueFilter{ - IssueType: &messageType, - Status: &openStatus, - Assignee: &assignee, - Priority: &urgentPriority, - } - - urgent, err := testStore.SearchIssues(ctx, "", urgentFilter) - if err != nil { - t.Fatalf("SearchIssues failed: %v", err) - } - - if len(urgent) != 1 { - t.Errorf("Expected 1 urgent message, got %d", len(urgent)) - } -} - -func TestMailTypeValidation(t *testing.T) { - tmpDir := t.TempDir() - testStore := newTestStore(t, tmpDir+"/.beads/beads.db") - ctx := context.Background() - - // Create a regular issue (not a message) - now := time.Now() - task := &types.Issue{ - Title: "Regular Task", - Status: types.StatusOpen, - Priority: 2, - IssueType: types.TypeTask, - CreatedAt: now, - UpdatedAt: now, - } - - if err := testStore.CreateIssue(ctx, task, "test"); err != nil { - t.Fatalf("Failed to create task: %v", err) - } - - // Query for messages should not return the task - messageType := types.TypeMessage - filter := types.IssueFilter{ - IssueType: &messageType, - } - - messages, err := testStore.SearchIssues(ctx, "", filter) - if err != nil { - t.Fatalf("SearchIssues failed: %v", err) - } - - for _, m := range messages { - if m.ID == task.ID { - t.Errorf("Task %s should not appear in message query", task.ID) - } - } -} - -func TestMailSenderField(t *testing.T) { - tmpDir := t.TempDir() - testStore := newTestStore(t, tmpDir+"/.beads/beads.db") - ctx := context.Background() - - // Create messages from different senders - now := time.Now() - senders := []string{"alice", "bob", "charlie"} - - for i, sender := range senders { - msg := &types.Issue{ - Title: "Message from " + sender, - Description: "Body", - Status: types.StatusOpen, - Priority: 2, - IssueType: types.TypeMessage, - Assignee: "inbox", - Sender: sender, - Ephemeral: true, - CreatedAt: now.Add(time.Duration(i) * time.Minute), - UpdatedAt: now.Add(time.Duration(i) * time.Minute), - } - if err := testStore.CreateIssue(ctx, msg, "test"); err != nil { - t.Fatalf("Failed to create message from %s: %v", sender, err) - } - } - - // Query all messages and verify sender - messageType := types.TypeMessage - filter := types.IssueFilter{ - IssueType: &messageType, - } - - messages, err := testStore.SearchIssues(ctx, "", filter) - if err != nil { - t.Fatalf("SearchIssues failed: %v", err) - } - - senderSet := make(map[string]bool) - for _, m := range messages { - if m.Sender != "" { - senderSet[m.Sender] = true - } - } - - for _, s := range senders { - if !senderSet[s] { - t.Errorf("Sender %q not found in messages", s) - } - } -} diff --git a/docs/graph-links.md b/docs/graph-links.md index 6f3c6a39..100ae449 100644 --- a/docs/graph-links.md +++ b/docs/graph-links.md @@ -9,7 +9,8 @@ Beads supports several types of links between issues to create a knowledge graph Creates message threads, similar to email or chat conversations. **Created by:** -- `bd mail reply ` command +- `gt mail reply ` command (Gas Town handles messaging) +- `bd dep add --type replies_to` (manual linking) **Use cases:** - Agent-to-agent message threads @@ -19,19 +20,19 @@ Creates message threads, similar to email or chat conversations. **Example:** ```bash -# Original message -bd mail send worker-1 -s "Review needed" -m "Please review bd-xyz" -# Creates: bd-a1b2 +# Original message (via Gas Town) +gt mail send gastown/worker -s "Review needed" -m "Please review gt-xyz" +# Creates: gt-a1b2 -# Reply (automatically sets replies_to: bd-a1b2) -bd mail reply bd-a1b2 -m "Done! Approved with minor comments." -# Creates: bd-c3d4 with replies_to: bd-a1b2 +# Reply (automatically sets replies_to) +gt mail reply gt-a1b2 -m "Done! Approved with minor comments." +# Creates: gt-c3d4 with replies_to: gt-a1b2 ``` **Viewing threads:** ```bash -bd show bd-a1b2 --thread +bd show gt-a1b2 --thread ``` ### relates_to - Loose Associations @@ -255,12 +256,12 @@ bd supersede bd-rfc2 --with bd-rfc3 ### Message Threading -Build conversation chains: +Build conversation chains (via Gas Town): ```bash -bd mail send dev -s "Question" -m "How does X work?" -bd mail reply bd-q1 -m "X works by..." -bd mail reply bd-q1.reply -m "Thanks!" +gt mail send gastown/dev -s "Question" -m "How does X work?" +gt mail reply gt-q1 -m "X works by..." +gt mail reply gt-q1.reply -m "Thanks!" ``` ## Best Practices diff --git a/docs/messaging.md b/docs/messaging.md deleted file mode 100644 index b3428ad0..00000000 --- a/docs/messaging.md +++ /dev/null @@ -1,254 +0,0 @@ -# Beads Messaging System - -Beads provides a built-in messaging system for inter-agent communication. Messages are stored as beads issues with type `message`, enabling git-native communication without external services. - -## Overview - -The messaging system enables: -- **Agent-to-agent communication** - Send messages between workers -- **Thread tracking** - Replies link back to original messages -- **Priority signaling** - Mark messages as urgent (P0) or routine -- **Ephemeral cleanup** - Messages can be bulk-deleted after completion - -## Identity Configuration - -Before using mail commands, configure your identity: - -### Environment Variable - -```bash -export BEADS_IDENTITY="worker-1" -``` - -### Config File - -Add to `.beads/config.json`: - -```json -{ - "identity": "worker-1" -} -``` - -### Priority - -1. `--identity` flag (if provided) -2. `BEADS_IDENTITY` environment variable -3. `.beads/config.json` identity field -4. System username (fallback) - -## Commands - -### Send a Message - -```bash -bd mail send -s -m -``` - -**Options:** -- `-s, --subject` - Message subject (required) -- `-m, --body` - Message body (required) -- `--urgent` - Set priority=0 (urgent) -- `--identity` - Override sender identity - -**Examples:** - -```bash -# Basic message -bd mail send worker-1 -s "Task complete" -m "Finished bd-xyz" - -# Urgent message -bd mail send manager -s "Blocked!" -m "Need credentials for deploy" --urgent - -# With custom identity -bd mail send worker-2 -s "Handoff" -m "Your turn on bd-abc" --identity refinery -``` - -### Check Your Inbox - -```bash -bd mail inbox -``` - -Lists all open messages addressed to your identity. - -**Options:** -- `--from ` - Filter by sender -- `--priority ` - Filter by priority (0-4) - -**Output:** - -``` -Inbox for worker-1 (2 messages): - - bd-a1b2: Task assigned [URGENT] - From: manager (5m ago) - - bd-c3d4: FYI: Design doc updated - From: worker-2 (1h ago) - Re: bd-x7y8 -``` - -### Read a Message - -```bash -bd mail read -``` - -Displays full message content. Does NOT mark as read. - -**Example output:** - -``` -ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ -ID: bd-a1b2 -From: manager -To: worker-1 -Subject: Task assigned -Time: 2025-12-16 10:30:45 -Priority: P0 -Status: open -ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ā”€ - -Please prioritize bd-xyz. It's blocking the release. - -Let me know if you need anything. -``` - -### Acknowledge (Mark as Read) - -```bash -bd mail ack [id2...] -``` - -Closes messages to mark them as acknowledged. - -**Examples:** - -```bash -# Single message -bd mail ack bd-a1b2 - -# Multiple messages -bd mail ack bd-a1b2 bd-c3d4 bd-e5f6 -``` - -### Reply to a Message - -```bash -bd mail reply -m -``` - -Creates a threaded reply to an existing message. - -**Options:** -- `-m, --body` - Reply body (required) -- `--urgent` - Set priority=0 -- `--identity` - Override sender identity - -**Behavior:** -- Sets `replies_to` to original message ID -- Sends to original message's sender -- Prefixes subject with "Re:" if not already present - -**Example:** - -```bash -bd mail reply bd-a1b2 -m "On it! Should be done by EOD." -``` - -## Message Storage - -Messages are stored as issues with these fields: - -| Field | Description | -|-------|-------------| -| `type` | `message` | -| `title` | Subject line | -| `description` | Message body | -| `assignee` | Recipient identity | -| `sender` | Sender identity | -| `priority` | 0 (urgent) to 4 (routine), default 2 | -| `ephemeral` | `true` - can be bulk-deleted | -| `replies_to` | ID of parent message (for threads) | -| `status` | `open` (unread) / `closed` (read) | - -## Cleanup - -Messages are ephemeral by default and can be cleaned up: - -```bash -# Preview ephemeral message cleanup -bd cleanup --ephemeral --dry-run - -# Delete all closed ephemeral messages -bd cleanup --ephemeral --force -``` - -## Hooks - -The messaging system fires hooks when messages are sent: - -**Hook file:** `.beads/hooks/on_message` - -The hook receives: -- **Arg 1:** Issue ID -- **Arg 2:** Event type (`message`) -- **Stdin:** Full issue JSON - -**Example hook:** - -```bash -#!/bin/sh -# .beads/hooks/on_message - -ISSUE_ID="$1" -EVENT="$2" - -# Parse assignee from JSON stdin -ASSIGNEE=$(cat | jq -r '.assignee') - -# Notify recipient (example: send to external system) -curl -X POST "https://example.com/notify" \ - -d "to=$ASSIGNEE&message=$ISSUE_ID" -``` - -Make the hook executable: - -```bash -chmod +x .beads/hooks/on_message -``` - -## JSON Output - -All commands support `--json` for programmatic use: - -```bash -bd mail inbox --json -bd mail read bd-a1b2 --json -bd mail send worker-1 -s "Hi" -m "Test" --json -``` - -## Thread Visualization - -Use `bd show --thread` to view message threads: - -```bash -bd show bd-c3d4 --thread -``` - -This shows the full conversation chain via `replies_to` links. - -## Best Practices - -1. **Use descriptive subjects** - Recipients scan subjects first -2. **Mark urgent sparingly** - P0 should be reserved for blockers -3. **Acknowledge promptly** - Keep inbox clean -4. **Clean up after sprints** - Run `bd cleanup --ephemeral` periodically -5. **Configure identity** - Use `BEADS_IDENTITY` for consistent sender names - -## See Also - -- [Graph Links](graph-links.md) - Other link types (relates_to, duplicates, supersedes) -- [Hooks](EXTENDING.md) - Custom hook scripts -- [Config](CONFIG.md) - Configuration options diff --git a/internal/hooks/hooks.go b/internal/hooks/hooks.go index fc61b22b..240c8456 100644 --- a/internal/hooks/hooks.go +++ b/internal/hooks/hooks.go @@ -12,18 +12,16 @@ import ( // Event types const ( - EventCreate = "create" - EventUpdate = "update" - EventClose = "close" - EventMessage = "message" + EventCreate = "create" + EventUpdate = "update" + EventClose = "close" ) // Hook file names const ( - HookOnCreate = "on_create" - HookOnUpdate = "on_update" - HookOnClose = "on_close" - HookOnMessage = "on_message" + HookOnCreate = "on_create" + HookOnUpdate = "on_update" + HookOnClose = "on_close" ) // Runner handles hook execution @@ -120,8 +118,6 @@ func eventToHook(event string) string { return HookOnUpdate case EventClose: return HookOnClose - case EventMessage: - return HookOnMessage default: return "" } diff --git a/internal/hooks/hooks_test.go b/internal/hooks/hooks_test.go index 53f60b45..db4204e5 100644 --- a/internal/hooks/hooks_test.go +++ b/internal/hooks/hooks_test.go @@ -44,7 +44,6 @@ func TestEventToHook(t *testing.T) { {EventCreate, HookOnCreate}, {EventUpdate, HookOnUpdate}, {EventClose, HookOnClose}, - {EventMessage, HookOnMessage}, {"unknown", ""}, {"", ""}, } @@ -182,7 +181,7 @@ echo "$1 $2" > ` + outputFile func TestRunSync_ReceivesJSON(t *testing.T) { tmpDir := t.TempDir() - hookPath := filepath.Join(tmpDir, HookOnMessage) + hookPath := filepath.Join(tmpDir, HookOnCreate) outputFile := filepath.Join(tmpDir, "stdin.txt") // Create a hook that captures stdin @@ -194,13 +193,12 @@ cat > ` + outputFile runner := NewRunner(tmpDir) issue := &types.Issue{ - ID: "bd-msg", - Title: "Test Message", - Sender: "alice", + ID: "bd-test", + Title: "Test Issue", Assignee: "bob", } - err := runner.RunSync(EventMessage, issue) + err := runner.RunSync(EventCreate, issue) if err != nil { t.Errorf("RunSync returned error: %v", err) } @@ -380,7 +378,6 @@ func TestAllHookEvents(t *testing.T) { {EventCreate, HookOnCreate}, {EventUpdate, HookOnUpdate}, {EventClose, HookOnClose}, - {EventMessage, HookOnMessage}, } for _, e := range events { From 4f504bdff8ec793974ebdfcad54a448be0aa7ef4 Mon Sep 17 00:00:00 2001 From: Steve Yegge Date: Sat, 20 Dec 2025 18:02:41 -0800 Subject: [PATCH 03/18] fix(test): resolve target path in symlink test for macOS MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit On macOS, /var is a symlink to /private/var, so EvalSymlinks returns the canonical path. The test needs to resolve the expected target path before comparison. šŸ¤– Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 --- .beads/issues.jsonl | 4 ++++ internal/utils/path_test.go | 6 ++++-- 2 files changed, 8 insertions(+), 2 deletions(-) diff --git a/.beads/issues.jsonl b/.beads/issues.jsonl index ae0b29d5..cbcba8ac 100644 --- a/.beads/issues.jsonl +++ b/.beads/issues.jsonl @@ -32,6 +32,7 @@ {"id":"bd-49kw","title":"Workaround for FastMCP outputSchema bug in Claude Code","description":"The beads MCP server (v0.23.1) successfully connects to Claude Code, but all tools fail to load with a schema validation error due to a bug in FastMCP 2.13.1.\n\nError: \"Invalid literal value, expected \\\"object\\\"\" in outputSchema.\n\nRoot Cause: FastMCP generates outputSchema with $ref at root level without \"type\": \"object\" for self-referential models (Issue).\n\nWorkaround: Use slash commands (/beads:ready) or wait for FastMCP fix.\n","status":"open","priority":1,"issue_type":"bug","created_at":"2025-11-20T18:55:39.041831-05:00","updated_at":"2025-11-20T18:55:39.041831-05:00"} {"id":"bd-4ec8","title":"Widespread double JSON encoding bug in daemon mode RPC calls","description":"Multiple CLI commands had the same double JSON encoding bug found in bd-1048. All commands that called ResolveID via RPC used string(resp.Data) instead of properly unmarshaling the JSON response. This caused IDs to retain JSON quotes (\"bd-1048\" instead of bd-1048), which then got double-encoded when passed to subsequent RPC calls.\n\nAffected commands:\n- bd show (3 instances)\n- bd dep add/remove/tree (5 instances)\n- bd label add/remove/list (3 instances)\n- bd reopen (1 instance)\n\nRoot cause: resp.Data is json.RawMessage (already JSON-encoded), so string() conversion preserves quotes.\n\nFix: Replace all string(resp.Data) with json.Unmarshal(resp.Data, \u0026id) for proper deserialization.\n\nAll commands now tested and working correctly with daemon mode.","status":"closed","issue_type":"bug","created_at":"2025-11-02T22:33:01.632691-08:00","updated_at":"2025-12-17T23:13:40.533631-08:00","closed_at":"2025-12-17T16:26:05.851197-08:00"} {"id":"bd-4hn","title":"wish: list \u0026 ready show issues as hierarchy tree","description":"`bd ready` and `bd list` just show a flat list, and it's up to the reader to parse which ones are dependent or sub-issues of others. It would be much easier to understand if they were shown in a tree format","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-08T06:38:24.016316945-07:00","updated_at":"2025-12-08T06:39:04.065882225-07:00"} +{"id":"bd-4lm3","title":"Correction: Pinned field already in v0.31.0","description":"Quick correction - the Pinned field is already in the current bd v0.31.0:\n\n```go\n// In beads internal/types/types.go\nPinned bool `json:\"pinned,omitempty\"`\n```\n\nSo you just need to:\n1. Add `Pinned bool `json:\"pinned,omitempty\"`` to BeadsMessage in types.go\n2. Sort pinned messages first in listBeads() after fetching\n\nNo migration needed - the field is already there.\n\n-- Mayor","status":"open","priority":2,"issue_type":"message","assignee":"gastown/crew/max","created_at":"2025-12-20T17:52:27.321458-08:00","updated_at":"2025-12-20T17:52:27.321458-08:00","labels":["from:beads-crew-dave","thread:thread-4dd70157dbc1"]} {"id":"bd-4nqq","title":"Remove dead test code in info_test.go","description":"Code health review found cmd/bd/info_test.go has two tests permanently skipped:\n\n- TestInfoCommand\n- TestInfoCommandNoDaemon\n\nBoth skip with: 'Manual test - bd info command is working, see manual testing'\n\nThese are essentially dead code. Either automate them or remove them entirely.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:27.554019-08:00","updated_at":"2025-12-16T18:17:27.554019-08:00","dependencies":[{"issue_id":"bd-4nqq","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.381694-08:00","created_by":"daemon","metadata":"{}"}]} {"id":"bd-4q8","title":"bd cleanup --hard should skip tombstone creation for true permanent deletion","description":"## Problem\n\nWhen using bd cleanup --hard --older-than N --force, the command:\n1. Deletes closed issues older than N days (converting them to tombstones with NOW timestamp)\n2. Then tries to prune tombstones older than N days (finds none because they were just created)\n\nThis leaves the database bloated with fresh tombstones that will not be pruned.\n\n## Expected Behavior\n\nIn --hard mode, the deletion should be permanent without creating tombstones, since the user explicitly requested bypassing sync safety.\n\n## Workaround\n\nManually delete from database: sqlite3 .beads/beads.db 'DELETE FROM issues WHERE status=tombstone'\n\n## Fix Options\n\n1. In --hard mode, use a different delete path that does not create tombstones\n2. After deleting, immediately prune the just-created tombstones regardless of age\n3. Pass a skip_tombstone flag to the delete operation\n\nOption 1 is cleanest - --hard should mean permanent delete without tombstone.","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T01:33:36.580657-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-4qfb","title":"Improve bd doctor output formatting for better readability","description":"The current bd doctor output is a wall of text that's hard to process. Consider improvements like:\n- Grouping related checks into collapsible sections\n- Using color/bold for section headers\n- Showing only failures/warnings by default with --verbose for full output\n- Better visual hierarchy between major sections\n- Summary line at top (e.g., '24 checks passed, 0 warnings, 0 errors')","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T09:29:27.557578+11:00","updated_at":"2025-12-13T09:29:27.557578+11:00"} @@ -69,6 +70,7 @@ {"id":"bd-8pyn","title":"Version Bump: 0.30.7","description":"Release checklist for version 0.30.7. This molecule ensures all release steps are completed properly.","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-19T22:56:48.648694-08:00","updated_at":"2025-12-20T00:25:59.529183-08:00","closed_at":"2025-12-20T00:25:59.529183-08:00","close_reason":"Version 0.30.7 released successfully - all steps completed"} {"id":"bd-8v2","title":"Add {{version}} to versionChanges in info.go","description":"Add new entry at TOP of versionChanges in cmd/bd/info.go with release notes from CHANGELOG.md. Must do before bump-version.sh --commit.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:00.482846-08:00","updated_at":"2025-12-18T22:45:21.465817-08:00","closed_at":"2025-12-18T22:45:21.465817-08:00","dependencies":[{"issue_id":"bd-8v2","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.496649-08:00","created_by":"daemon"},{"issue_id":"bd-8v2","depends_on_id":"bd-kyo","type":"blocks","created_at":"2025-12-18T22:43:20.69619-08:00","created_by":"daemon"}]} {"id":"bd-90v","title":"bd prime: AI context loading and Claude Code integration","description":"Implement `bd prime` command and Claude Code hooks for context recovery. Hooks work with BOTH MCP server and CLI approaches - they solve the context memory problem (keeping bd workflow fresh after compaction) not the tool access problem (MCP vs CLI).","status":"open","priority":2,"issue_type":"epic","created_at":"2025-11-11T23:31:12.119012-08:00","updated_at":"2025-11-12T00:11:07.743189-08:00"} +{"id":"bd-95k8","title":"Pinned field available in beads v0.37.0","description":"Hey max,\n\nHeads up on your mail overhaul work:\n\n1. **Pinned field is available** - beads v0.37.0 (released by dave earlier) includes the pinned field on issues. You'll want to add this to BeadsMessage in types.go.\n\n2. **Database migration** - Check if existing .beads databases need migration to support the pinned field. Run `bd doctor` to see if it flags anything.\n\n3. **Sorting task** - Once you have the pinned field, gt-ngu1 (pinned beads first in mail inbox) needs implementing. Since messages now come from `bd list --type=message`, you'll need to either:\n - Sort in listBeads() after fetching, or\n - Ensure bd list returns pinned items first (may already do this?)\n\nCheck what version of bd you're building against.\n\n-- Mayor","status":"open","priority":2,"issue_type":"message","assignee":"gastown/crew/max","created_at":"2025-12-20T17:51:57.315956-08:00","updated_at":"2025-12-20T17:51:57.315956-08:00","labels":["from:beads-crew-dave","thread:thread-71ac20c7e432"]} {"id":"bd-9cdc","title":"Update docs for import bug fix","description":"Update AGENTS.md, README.md, TROUBLESHOOTING.md with import.orphan_handling config documentation. Document resurrection behavior, tombstones, config modes. Add troubleshooting section for import failures with deleted parents.","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-04T12:32:30.770415-08:00","updated_at":"2025-11-04T12:32:30.770415-08:00"} {"id":"bd-9g1z","title":"Fix or remove TestFindJSONLPathDefault (issue #356)","description":"Code health review found .test-skip permanently skips TestFindJSONLPathDefault.\n\nThe test references issue #356 about wrong JSONL filename expectations (issues.jsonl vs beads.jsonl).\n\nTest file: internal/beads/beads_test.go\n\nThe underlying migration from beads.jsonl to issues.jsonl may be complete, so either:\n1. Fix the test expectations\n2. Remove the test if no longer needed\n3. Document why it remains skipped","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-16T18:17:31.33975-08:00","updated_at":"2025-12-16T18:17:31.33975-08:00","dependencies":[{"issue_id":"bd-9g1z","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.169617-08:00","created_by":"daemon","metadata":"{}"}]} {"id":"bd-9usz","title":"Test suite hangs/never finishes","description":"Running 'go test ./... -count=1' hangs indefinitely. The full test suite never completes, making it difficult to verify changes. Need to investigate which tests are hanging and fix or add timeouts.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-16T21:56:27.80191-08:00","updated_at":"2025-12-16T21:56:27.80191-08:00"} @@ -139,6 +141,7 @@ {"id":"bd-eyto","title":"Time-dependent tests may be flaky near TTL boundary","description":"Several tombstone merge tests use time.Now() to create test data: time.Now().Add(-24 * time.Hour), time.Now().Add(-60 * 24 * time.Hour), etc. While these work reliably in practice (24h vs 30d TTL has large margin), they could theoretically be flaky if: 1) Tests run slowly, 2) System clock changes during test, 3) TTL constants change. Recommendation: Consider using a fixed reference time or time injection for deterministic tests. Lower priority since current margin is large. Files: internal/merge/merge_test.go:1337-1338, 1352-1353, 1548-1549, 1590-1591","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-05T16:37:02.348143-08:00","updated_at":"2025-12-05T16:37:02.348143-08:00"} {"id":"bd-f3ll","title":"Merge: bd-ot0w","description":"branch: polecat/dementus\ntarget: main\nsource_issue: bd-ot0w\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:20:33.495772-08:00","updated_at":"2025-12-19T23:20:33.495772-08:00"} {"id":"bd-f5cc","title":"Thread Test","description":"Testing the thread feature","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:01.244501-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-f5cc","depends_on_id":"bd-x36g","type":"supersedes","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} +{"id":"bd-fa2h","title":"šŸ¤ HANDOFF: v0.31.0 released, molecules discussion","description":"Session completed 0.31.0 release and had important molecules discussion.\n\n## Completed\n- v0.31.0 released (deferred status, audit trail, directory labels, etc.)\n- Fixed lint issues, hook version markers, codesigning\n- All CI green, artifacts verified\n\n## Filed Issues\n- bd-usro: Rename template instantiate ā†’ bd mol bond\n- bd-y8bj: Auto-detect identity for bd mail (P1 bug)\n- gt-975: Molecule execution support for polecats/crew\n- gt-976: Crew lifecycle support in Deacon\n\n## Key Insight\nMolecules are the future - TodoWrite is ephemeral, molecules are persistent institutional memory on the world chain. I tried to use TodoWrite for version bump and missed steps (codesigning, MCP verification). Molecules would have caught this.\n\n## Next Steps\n- bd mol bond implementation is priority\n- Max has gt-976 for crew lifecycle (enables automated refresh mid-molecule)\n\nCheck bd ready and gt-975/976 status.","status":"open","priority":2,"issue_type":"message","assignee":"beads/crew/dave","created_at":"2025-12-20T17:23:09.889562-08:00","updated_at":"2025-12-20T17:23:09.889562-08:00","sender":"Steve Yegge","ephemeral":true} {"id":"bd-fgw3","title":"Update local installation","description":"Run install script or brew upgrade to get new version locally: curl -fsSL .../install.sh | bash","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:05.052016-08:00","updated_at":"2025-12-20T00:25:52.805029-08:00","closed_at":"2025-12-20T00:25:52.805029-08:00","close_reason":"Local bd updated to 0.30.7","dependencies":[{"issue_id":"bd-fgw3","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.248427-08:00","created_by":"daemon"},{"issue_id":"bd-fgw3","depends_on_id":"bd-si4g","type":"blocks","created_at":"2025-12-19T22:56:23.497325-08:00","created_by":"daemon"}]} {"id":"bd-fi05","title":"bd sync fails with orphaned issues and duplicate ID conflict","description":"After fixing the deleted_at TEXT column scanning bug (commit 18b1eb2), bd sync still fails with two issues:\n\n1. Orphan Detection Warning: 12 orphaned child issues whose parents no longer exist (bd-cb64c226.* and bd-cbed9619.*)\n\n2. Import Failure: UNIQUE constraint failed for bd-360 - this tombstone exists in both DB and JSONL\n\nError: \"Import failed: error creating depth-0 issues: bulk insert issues: failed to insert issue bd-360: sqlite3: constraint failed: UNIQUE constraint failed: issues.id\"\n\nFix options:\n- Delete orphaned child issues with bd delete\n- Resolve bd-360 duplicate (in deletions.jsonl vs tombstone in DB)\n- Reset sync branch: git branch -f beads-sync main \u0026\u0026 git push --force-with-lease origin beads-sync","notes":"Fixed tombstone constraint violation bug. When deleting closed issues, the CHECK constraint (status = 'closed') = (closed_at IS NOT NULL) was violated because CreateTombstone didn't clear closed_at. Fix: set closed_at = NULL in tombstone creation SQL.\n\nThe sync data corruption (orphaned issues in beads-sync branch) requires manual cleanup: reset sync branch with 'git branch -f beads-sync main \u0026\u0026 git push --force-with-lease origin beads-sync'","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-13T07:14:33.831346-08:00","updated_at":"2025-12-13T10:50:48.545465-08:00","closed_at":"2025-12-13T07:30:33.843986-08:00"} {"id":"bd-fom","title":"Remove all deletions.jsonl code except migration","description":"There's deletions manifest code spread across the entire codebase that should have been removed after tombstone migration:\n\nFiles with deletions code (non-migration):\n- internal/deletions/ - entire package\n- cmd/bd/sync.go - 25+ references, auto-compact, sanitize\n- cmd/bd/delete.go - dual-writes to deletions.jsonl\n- internal/importer/importer.go - checks deletions manifest\n- internal/syncbranch/worktree.go - merges deletions.jsonl\n- cmd/bd/doctor/fix/sync.go - cleanupDeletionsManifest\n- cmd/bd/doctor/fix/deletions.go - HydrateDeletionsManifest\n- cmd/bd/integrity.go - checks deletions for data loss\n- cmd/bd/deleted.go - entire command\n- cmd/bd/compact.go - pruneDeletionsManifest\n- cmd/bd/doctor.go - checkDeletionsManifest\n- Plus many more\n\nAction: Aggressively remove all non-migration deletions code. Tombstones are the only deletion mechanism now.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T13:29:04.960863-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} @@ -290,6 +293,7 @@ {"id":"bd-xj2e","title":"GH#522: Add --type flag to bd update command","description":"Add --type flag to bd update for changing issue type (task/epic/bug/feature). Storage layer already supports it. See GitHub issue #522.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:12.506583-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-y2v","title":"Refactor duplicate JSONL-from-git parsing code","description":"Both readFirstIssueFromGit() in init.go and importFromGit() in autoimport.go have similar code patterns for:\n1. Running git show \u003cref\u003e:\u003cpath\u003e\n2. Scanning the output with bufio.Scanner\n3. Parsing JSON lines\n\nCould be refactored to share a helper like:\n- readJSONLFromGit(gitRef, path string) ([]byte, error)\n- Or a streaming version: streamJSONLFromGit(gitRef, path string) (io.Reader, error)\n\nFiles:\n- cmd/bd/autoimport.go:225-256 (importFromGit)\n- cmd/bd/init.go:1212-1243 (readFirstIssueFromGit)\n\nPriority is low since code duplication is minimal and both functions work correctly.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-05T14:51:18.41124-08:00","updated_at":"2025-12-05T14:51:18.41124-08:00"} {"id":"bd-y4vz","title":"Work on beads-eub: Consolidated context tool for MCP serv...","description":"Work on beads-eub: Consolidated context tool for MCP server (GH#636). Merge set_context, where_am_i, init into single 'context' tool. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:58.527144-08:00","updated_at":"2025-12-20T00:26:12.607357-08:00","closed_at":"2025-12-19T23:31:11.906952-08:00"} +{"id":"bd-y8bj","title":"Auto-detect identity from directory context for bd mail","description":"Currently bd mail inbox defaults to git user name, requiring --identity flag with exact format.\n\n## Problem\n- Mail sent to `gastown/crew/max`\n- Max runs `bd mail inbox` ā†’ defaults to 'Steve Yegge' (git user)\n- Max must know to use `--identity 'gastown/crew/max'` with exact slashes\n\n## Proposed Fix\nAuto-detect identity from directory context when in a Gas Town workspace:\n- In `/Users/stevey/gt/gastown/crew/max`, infer identity = `gastown/crew/max`\n- Pattern: `\u003ctown\u003e/\u003crig\u003e/\u003crole\u003e/\u003cname\u003e` ā†’ `\u003crig\u003e/\u003crole\u003e/\u003cname\u003e`\n\n## Additional Improvements\n1. Support GT_IDENTITY env var (set by gt crew at / session spawning)\n2. Support identity in .beads/config.yaml\n3. Normalize format: accept both slashes and dashes as equivalent\n\n## Context\nDiscovered during crew-to-crew work assignment. Max couldn't see mail despite correct nudge because identity defaulted wrong.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-20T17:22:53.938586-08:00","updated_at":"2025-12-20T17:58:51.034201-08:00","closed_at":"2025-12-20T17:58:51.034201-08:00","close_reason":"Obsolete - bd mail commands removed, mail now in Gas Town"} {"id":"bd-y8tn","title":"Test Molecule","description":"A test molecule","status":"closed","priority":2,"issue_type":"molecule","created_at":"2025-12-19T18:30:24.491279-08:00","updated_at":"2025-12-19T18:31:12.49898-08:00","closed_at":"2025-12-19T18:31:12.49898-08:00","close_reason":"test molecule - deleting"} {"id":"bd-yck","title":"Fix checkExistingBeadsData to be worktree-aware","description":"The checkExistingBeadsData function in cmd/bd/init.go checks for .beads in the current working directory, but for worktrees it should check the main repository root instead. This prevents proper worktree compatibility.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-07T16:48:32.082776345-07:00","updated_at":"2025-12-07T16:48:32.082776345-07:00"} {"id":"bd-ykd9","title":"Add bd doctor --fix flag to automatically repair issues","description":"Implement a --fix flag for bd doctor that can automatically repair detected issues.\n\nRequirements:\n- Add --fix flag to bd doctor command\n- Show all fixable issues and prompt for confirmation before applying fixes\n- Organize fix implementations under doctor/fix/\u003ctype_of_fix\u003e.go\n- Each fix type should have its own file (e.g., doctor/fix/hooks.go, doctor/fix/sync.go)\n- Display what will be fixed and ask user to confirm (Y/n) before proceeding\n- Support fixing issues like:\n - Missing or broken git hooks\n - Sync problems with remote\n - File permission issues\n - Any other auto-repairable issues doctor detects\n\nImplementation notes:\n- Maintain separation between detection (existing doctor code) and repair (new fix code)\n- Each fix should be idempotent and safe to run multiple times\n- Provide clear output about what was fixed\n- Log any fixes that fail with actionable error messages","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-14T18:17:48.411264-08:00","updated_at":"2025-11-14T18:17:58.88609-08:00"} diff --git a/internal/utils/path_test.go b/internal/utils/path_test.go index c0530c3c..165c7529 100644 --- a/internal/utils/path_test.go +++ b/internal/utils/path_test.go @@ -212,8 +212,10 @@ func TestResolveForWrite(t *testing.T) { if err != nil { t.Fatalf("unexpected error: %v", err) } - if got != target { - t.Errorf("got %q, want %q", got, target) + // Resolve target too - on macOS, /var is symlink to /private/var + wantTarget, _ := filepath.EvalSymlinks(target) + if got != wantTarget { + t.Errorf("got %q, want %q", got, wantTarget) } }) From 1b2cd71c974a8edc8071a977b6f29eed6642aa57 Mon Sep 17 00:00:00 2001 From: Steve Yegge Date: Sat, 20 Dec 2025 18:11:16 -0800 Subject: [PATCH 04/18] fix(docs): correct broken link to LABELS.md in examples MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit LABELS.md is in docs/, not root. Fixes #666 šŸ¤– Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 --- .beads/issues.jsonl | 584 +++++++++++++-------------- examples/multiple-personas/README.md | 2 +- 2 files changed, 293 insertions(+), 293 deletions(-) diff --git a/.beads/issues.jsonl b/.beads/issues.jsonl index f42107a4..cbcba8ac 100644 --- a/.beads/issues.jsonl +++ b/.beads/issues.jsonl @@ -1,305 +1,305 @@ -{"id":"bd-pbh.6","title":"Update integrations/beads-mcp/pyproject.toml to 0.30.4","description":"Update version in pyproject.toml:\n```toml\nversion = \"0.30.4\"\n```\n\n\n```verify\ngrep -q 'version = \"0.30.4\"' integrations/beads-mcp/pyproject.toml\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.994004-08:00","updated_at":"2025-12-17T21:46:46.246574-08:00","closed_at":"2025-12-17T21:46:46.246574-08:00","dependencies":[{"issue_id":"bd-pbh.6","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.994376-08:00","created_by":"daemon"}]} -{"id":"bd-hlsw.4","title":"Sync branch integrity guards","description":"Track sync branch parent commit. If sync branch was force-pushed, warn user and require confirmation before proceeding. Add option to reset to remote if user accepts rebase. Prevents silent corruption from forced pushes.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-14T10:40:20.645402352-07:00","updated_at":"2025-12-14T10:40:20.645402352-07:00","dependencies":[{"issue_id":"bd-hlsw.4","depends_on_id":"bd-hlsw","type":"parent-child","created_at":"2025-12-14T10:40:20.646425761-07:00","created_by":"daemon"}]} -{"id":"bd-28db","title":"Add 'bd status' command for issue database overview","description":"Implement a bd status command that provides a quick snapshot of the issue database state, similar to how git status shows working tree state.\n\nExpected output: Show summary including counts by state (open, in-progress, blocked, closed), recent activity (last 7 days), and quick overview without needing multiple queries.\n\nExample output showing issue counts, recent activity stats, and pointer to bd list for details.\n\nProposed options: --all (show all issues), --assigned (show issues assigned to current user), --json (JSON format output)\n\nUse cases: Quick project health check, onboarding for new contributors, integration with shell prompts or CI/CD, daily standup reference","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-02T17:25:59.203549-08:00","updated_at":"2025-11-02T17:25:59.203549-08:00"} -{"id":"bd-2oo","title":"Edge Schema Consolidation: Unify all edges in dependencies table","description":"Consolidate all edge types into the dependency table per decision 004.\n\n## Changes\n- Add metadata column to dependencies table\n- Add thread_id column for conversation grouping\n- Remove redundant Issue fields: replies_to, relates_to, duplicate_of, superseded_by\n- Update all code to use dependencies API\n- Migration script for existing data\n- JSONL format change (breaking)\n\nReference: ~/gt/hop/decisions/004-edge-schema-consolidation.md","status":"closed","issue_type":"epic","created_at":"2025-12-18T02:01:48.785558-08:00","updated_at":"2025-12-18T02:49:10.61237-08:00","closed_at":"2025-12-18T02:49:10.61237-08:00"} -{"id":"bd-r6a.2","title":"Implement subgraph cloning with variable substitution","description":"Core implementation of template instantiation:\n\n1. Add `bd template instantiate \u003ctemplate-id\u003e [--var key=value]...` command\n2. Implement subgraph loading:\n - Load template epic\n - Recursively load all children (and their children)\n - Load all dependencies between issues in the subgraph\n3. Implement variable substitution:\n - Scan titles and descriptions for `{{name}}` patterns\n - Replace with provided values\n - Error on missing required variables (or prompt interactively)\n4. Implement cloning:\n - Generate new IDs for all issues\n - Create cloned issues with substituted text\n - Remap and create dependencies\n5. Return the new epic ID\n\nConsider adding `--dry-run` flag to preview what would be created.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T22:43:25.179848-08:00","updated_at":"2025-12-17T23:02:29.034444-08:00","closed_at":"2025-12-17T23:02:29.034444-08:00","dependencies":[{"issue_id":"bd-r6a.2","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:25.180286-08:00","created_by":"daemon"},{"issue_id":"bd-r6a.2","depends_on_id":"bd-r6a.1","type":"blocks","created_at":"2025-12-17T22:44:03.15413-08:00","created_by":"daemon"}]} -{"id":"bd-cb64c226.9","title":"Remove Cache-Related Tests","description":"Delete or update tests that assume multi-repo caching","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:44.511897-07:00","updated_at":"2025-12-17T23:18:29.110385-08:00","deleted_at":"2025-12-17T23:18:29.110385-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-7tuu","title":"Commit and push release","description":"git add -A \u0026\u0026 git commit \u0026\u0026 git push to trigger CI","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:02.053382-08:00","updated_at":"2025-12-20T01:23:52.484043-08:00","closed_at":"2025-12-20T01:23:52.484043-08:00","dependencies":[{"issue_id":"bd-7tuu","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.021087-08:00","created_by":"daemon"},{"issue_id":"bd-7tuu","depends_on_id":"bd-hw3w","type":"blocks","created_at":"2025-12-19T22:56:23.291591-08:00","created_by":"daemon"}]} -{"id":"bd-xctp","title":"GH#519: bd sync fails when sync.branch is currently checked-out branch","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:06:05.319281-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-6sm6","title":"Improve test coverage for internal/export (37.1% ā†’ 60%)","description":"The export package has only 37.1% test coverage. Export functionality needs good coverage to ensure data integrity.\n\nCurrent coverage: 37.1%\nTarget coverage: 60%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:06.802277-08:00","updated_at":"2025-12-13T21:01:19.08088-08:00"} -{"id":"bd-c2xs","title":"Exclude pinned issues from bd blocked","description":"Update bd blocked to exclude pinned issues. Pinned issues are context markers and should not appear in the blocked work list.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:44.684242-08:00","updated_at":"2025-12-18T23:33:44.684242-08:00","dependencies":[{"issue_id":"bd-c2xs","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.521323-08:00","created_by":"daemon"},{"issue_id":"bd-c2xs","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.736681-08:00","created_by":"daemon"}]} -{"id":"bd-89f89fc0","title":"Remove unreachable RPC methods","description":"Several RPC server and client methods are unreachable and should be removed:\n\nServer methods (internal/rpc/server.go):\n- `Server.GetLastImportTime` (line 2116)\n- `Server.SetLastImportTime` (line 2123)\n- `Server.findJSONLPath` (line 2255)\n\nClient methods (internal/rpc/client.go):\n- `Client.Import` (line 311) - RPC import not used (daemon uses autoimport)\n\nEvidence:\n```bash\ngo run golang.org/x/tools/cmd/deadcode@latest -test ./...\n```\n\nImpact: Removes ~80 LOC of unused RPC code","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-28T16:20:02.432202-07:00","updated_at":"2025-12-17T22:58:34.564401-08:00","closed_at":"2025-12-17T22:58:34.564401-08:00"} -{"id":"bd-pbh.2","title":"Update CHANGELOG.md for 0.30.4","description":"1. Change `## [Unreleased]` to `## [0.30.4] - 2025-12-17`\n2. Add new empty `## [Unreleased]` section at top\n3. Ensure all changes since 0.30.3 are documented\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.956332-08:00","updated_at":"2025-12-17T21:46:46.214512-08:00","closed_at":"2025-12-17T21:46:46.214512-08:00","dependencies":[{"issue_id":"bd-pbh.2","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.95683-08:00","created_by":"daemon"}]} -{"id":"bd-o9o","title":"Exclude pinned issues from bd ready","description":"Update bd ready to exclude pinned issues. Pinned issues are context markers, not work items, and should never appear in the ready-to-work list.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:41.979073-08:00","updated_at":"2025-12-18T23:33:41.979073-08:00","dependencies":[{"issue_id":"bd-o9o","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.392931-08:00","created_by":"daemon"},{"issue_id":"bd-o9o","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.612655-08:00","created_by":"daemon"}]} -{"id":"bd-r6a.3","title":"Create version-bump template as native Beads","description":"Migrate the version-bump workflow from YAML to a native Beads template:\n\n1. Create epic with template label: Release {{version}}\n2. Create child tasks for each step (update version files, changelog, commit, push, publish)\n3. Set up dependencies between tasks\n4. Add verification commands in task descriptions\n\nThis serves as both migration and validation of the new system.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T22:43:40.694931-08:00","updated_at":"2025-12-18T17:42:26.001149-08:00","closed_at":"2025-12-18T13:02:09.039457-08:00","dependencies":[{"issue_id":"bd-r6a.3","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:40.695392-08:00","created_by":"daemon"},{"issue_id":"bd-r6a.3","depends_on_id":"bd-r6a.2","type":"blocks","created_at":"2025-12-17T22:44:03.311902-08:00","created_by":"daemon"}]} -{"id":"bd-379","title":"Implement `bd setup cursor` for Cursor IDE integration","description":"Create a `bd setup cursor` command that integrates Beads workflow into Cursor IDE via .cursorrules file. Unlike Claude Code (which has hooks), Cursor uses a static rules file to provide context to its AI.","status":"open","priority":3,"issue_type":"feature","created_at":"2025-11-11T23:32:22.170083-08:00","updated_at":"2025-11-11T23:32:22.170083-08:00"} -{"id":"bd-r6a.5","title":"Update documentation for template system","description":"Update AGENTS.md and help text to document the new template system:\n\n- How to create a template (epic + template label + child issues)\n- How to define variables (just use {{name}} placeholders)\n- How to instantiate (bd template instantiate)\n- Migration from YAML workflows (if any users had custom ones)","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-17T22:43:55.461345-08:00","updated_at":"2025-12-18T17:42:26.001474-08:00","closed_at":"2025-12-18T13:46:53.446262-08:00","dependencies":[{"issue_id":"bd-r6a.5","depends_on_id":"bd-r6a.3","type":"blocks","created_at":"2025-12-17T22:44:03.632404-08:00","created_by":"daemon"},{"issue_id":"bd-r6a.5","depends_on_id":"bd-r6a.4","type":"blocks","created_at":"2025-12-17T22:44:03.788517-08:00","created_by":"daemon"},{"issue_id":"bd-r6a.5","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:55.461763-08:00","created_by":"daemon"}]} -{"id":"bd-4ri","title":"Fix TestFallbackToDirectModeEnablesFlush deadlock causing 10min test timeout","description":"## Problem\n\nTestFallbackToDirectModeEnablesFlush in direct_mode_test.go deadlocks for 9m59s before timing out, causing the entire test suite to take 10+ minutes instead of \u003c10 seconds.\n\n## Root Cause\n\nDatabase lock contention between test cleanup and flushToJSONL():\n- Test cleanup (line 36) tries to close DB via defer\n- flushToJSONL() (line 132) is still accessing DB\n- Results in deadlock: database/sql.(*DB).Close() waits for mutex while GetJSONLFileHash() holds it\n\n## Stack Trace Evidence\n\n```\ngoroutine 512 [sync.Mutex.Lock, 9 minutes]:\ndatabase/sql.(*DB).Close(0x14000643790)\n .../database/sql/sql.go:927 +0x84\ngithub.com/steveyegge/beads/cmd/bd.TestFallbackToDirectModeEnablesFlush.func1()\n .../direct_mode_test.go:36 +0xf4\n\nWhile goroutine running flushToJSONL() holds DB connection via GetJSONLFileHash()\n```\n\n## Impact\n\n- Test suite: 10+ minutes ā†’ should be \u003c10 seconds\n- ALL other tests pass in ~4 seconds\n- This ONE test accounts for 99.9% of test runtime\n\n## Related\n\nThis is the EXACT same issue documented in MAIN_TEST_REFACTOR_NOTES.md for why main_test.go refactoring was deferred - global state manipulation + DB cleanup = deadlock.\n\n## Fix Approaches\n\n1. **Add proper cleanup sequencing** - stop flush goroutines BEFORE closing DB\n2. **Use test-specific DB lifecycle** - ensure flush completes before cleanup\n3. **Mock the flush mechanism** - avoid real DB for testing this code path \n4. **Add explicit timeout handling** - fail fast with clear error instead of hanging\n\n## Files\n\n- cmd/bd/direct_mode_test.go:36-132\n- cmd/bd/autoflush.go:353 (validateJSONLIntegrity)\n- cmd/bd/autoflush.go:508 (flushToJSONLWithState)\n\n## Acceptance\n\n- Test passes without timeout\n- Test suite completes in \u003c10 seconds\n- No deadlock between cleanup and flush operations","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-21T20:09:00.794372-05:00","updated_at":"2025-12-17T23:13:40.533279-08:00","closed_at":"2025-12-17T17:25:07.626617-08:00"} -{"id":"bd-581b80b3","title":"bd find-duplicates - AI-powered duplicate detection","description":"Find semantically duplicate issues.\n\nApproaches:\n1. Mechanical: Exact title/description matching\n2. Embeddings: Cosine similarity (cheap, scalable)\n3. AI: LLM-based semantic comparison (expensive, accurate)\n\nUses embeddings by default for \u003e100 issues.\n\nFiles: cmd/bd/find_duplicates.go (new)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-10-29T20:49:49.126801-07:00","updated_at":"2025-12-17T22:58:34.563511-08:00","closed_at":"2025-12-17T22:58:34.563511-08:00"} -{"id":"bd-4sfl","title":"Merge: bd-14ie","description":"branch: polecat/toast\ntarget: main\nsource_issue: bd-14ie\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:23:37.360782-08:00","updated_at":"2025-12-19T23:23:37.360782-08:00"} -{"id":"bd-47tn","title":"Add bd daemon --stop-all command to kill all daemon processes","description":"Currently there's no easy way to stop all running bd daemon processes. Users must resort to pkill -f 'bd daemon' or similar shell commands.\n\nAdd a --stop-all flag to bd daemon that:\n1. Finds all running bd daemon processes (not just the current repo's daemon)\n2. Gracefully stops them all\n3. Reports how many were stopped\n\nThis is useful when:\n- Multiple daemons are running and causing race conditions\n- User wants a clean slate before running bd sync\n- Debugging daemon-related issues","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-13T06:34:45.080633-08:00","updated_at":"2025-12-16T01:14:49.501989-08:00","closed_at":"2025-12-14T17:33:03.057089-08:00"} -{"id":"bd-fu83","title":"Fix daemon/direct mode inconsistency in relate and duplicate commands","description":"The relate.go and duplicate.go commands have inconsistent daemon/direct mode handling:\n\nWhen daemonClient is connected, they resolve IDs via RPC but then perform updates directly via store.UpdateIssue(), bypassing the daemon.\n\nAffected locations:\n- relate.go:125-139 (runRelate update)\n- relate.go:235-246 (runUnrelate update) \n- duplicate.go:120 (runDuplicate update)\n- duplicate.go:207 (runSupersede update)\n\nShould either use RPC for updates when daemon is running, or document why direct access is intentional.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-16T20:52:54.164189-08:00","updated_at":"2025-12-16T20:52:54.164189-08:00"} +{"id":"bd-05a8","title":"Split large cmd/bd files: doctor.go (2948 lines), sync.go (2121 lines)","description":"Code health review found several oversized files:\n\n1. doctor.go - 2948 lines, 48 functions mixed together\n - Should split into doctor/checks/*.go for individual diagnostics\n - applyFixes() and previewFixes() are nearly identical\n\n2. sync.go - 2121 lines\n - ZFC (Zero Flush Check) logic embedded inline (lines 213-247)\n - Multiple mode handlers should be extracted\n\n3. init.go - 1732 lines\n4. compact.go - 1097 lines\n5. show.go - 1069 lines\n\nRecommendation: Extract into focused sub-packages or split into logical files.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-16T18:17:18.169927-08:00","updated_at":"2025-12-16T18:17:18.169927-08:00","dependencies":[{"issue_id":"bd-05a8","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.846503-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-06px","title":"bd sync --from-main fails: unknown flag --no-git-history","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-17T14:32:02.998106-08:00","updated_at":"2025-12-17T23:13:40.531756-08:00","closed_at":"2025-12-17T17:21:48.506039-08:00"} +{"id":"bd-077e","title":"Add close_reason field to CLI schema and documentation","description":"PR #551 persists close_reason, but the CLI documentation may not mention this field as part of the issue schema.\n\n## Current State\n- close_reason is now persisted in database\n- `bd show --json` will return close_reason in JSON output\n- Documentation may not reflect this new field\n\n## What's Missing\n- CLI reference documentation for close_reason field\n- Schema documentation showing close_reason is a top-level issue field\n- Example output showing close_reason in bd show --json\n- bd close command documentation should mention close_reason parameter is optional\n\n## Suggested Action\n1. Update README.md or CLI reference docs to list close_reason as an issue field\n2. Add example to bd close documentation\n3. Update any type definitions or schema specs\n4. Consider adding close_reason to verbose list output (bd list --verbose)","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-14T14:25:28.448654-08:00","updated_at":"2025-12-14T14:25:28.448654-08:00","dependencies":[{"issue_id":"bd-077e","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:28.449968-08:00","created_by":"stevey","metadata":"{}"}]} {"id":"bd-0a43","title":"Split monolithic sqlite.go into focused files","description":"internal/storage/sqlite/sqlite.go is 1050 lines containing initialization, 20+ CRUD methods, query building, and schema management.\n\nSplit into:\n- store.go: Store struct \u0026 initialization (150 lines)\n- bead_queries.go: Bead CRUD (300 lines)\n- work_queries.go: Work queries (200 lines) \n- stats_queries.go: Statistics (150 lines)\n- schema.go: Schema \u0026 migrations (150 lines)\n- helpers.go: Common utilities (100 lines)\n\nImpact: Impossible to understand at a glance; hard to find specific functionality; high cognitive load\n\nEffort: 6-8 hours","status":"closed","issue_type":"task","created_at":"2025-11-16T14:51:16.520465-08:00","updated_at":"2025-12-17T23:13:40.533947-08:00","closed_at":"2025-12-17T16:51:30.236012-08:00"} -{"id":"bd-pbh.16","title":"Update Homebrew formula","description":"After GoReleaser completes, the Homebrew tap should be auto-updated.\n\nIf manual update needed:\n```bash\n./scripts/update-homebrew.sh v0.30.4\n```\n\nOr manually update steveyegge/homebrew-beads with new SHA256.\n\nVerify:\n```bash\nbrew update\nbrew info beads\n```\n","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.100213-08:00","updated_at":"2025-12-17T21:46:46.341942-08:00","closed_at":"2025-12-17T21:46:46.341942-08:00","dependencies":[{"issue_id":"bd-pbh.16","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.100541-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.16","depends_on_id":"bd-pbh.13","type":"blocks","created_at":"2025-12-17T21:19:11.312625-08:00","created_by":"daemon"}]} +{"id":"bd-0d5p","title":"Fix TestRunSync_Timeout failing on macOS","description":"The hooks timeout test fails because exec.CommandContext doesn't properly terminate child processes of shell scripts on macOS. The test creates a hook that runs 'sleep 60' with a 500ms timeout, but it waits the full 60 seconds.\n\nOptions to fix:\n- Use SysProcAttr{Setpgid: true} to create process group and kill the group\n- Skip test on darwin with build tag\n- Use a different approach for timeout testing\n\nLocation: internal/hooks/hooks_test.go:220-253","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T20:52:51.771217-08:00","updated_at":"2025-12-17T23:13:40.532688-08:00","closed_at":"2025-12-17T17:23:55.678799-08:00"} {"id":"bd-0fvq","title":"bd doctor should recommend bd prime migration for existing repos","description":"bd doctor should detect old beads integration patterns and recommend migrating to bd prime approach.\n\n## Current behavior\n- bd doctor checks if Claude hooks are installed globally\n- Doesn't check project-level integration (AGENTS.md, CLAUDE.md)\n- Doesn't recommend migration for repos using old patterns\n\n## Desired behavior\nbd doctor should detect and suggest:\n\n1. **Old slash command pattern detected**\n - Check for /beads:* references in AGENTS.md, CLAUDE.md\n - Suggest: These slash commands are deprecated, use bd prime hooks instead\n \n2. **No agent documentation**\n - Check if AGENTS.md or CLAUDE.md exists\n - Suggest: Run 'bd onboard' or 'bd setup claude' to document workflow\n \n3. **Old MCP-only pattern**\n - Check for instructions to use MCP tools but no bd prime hooks\n - Suggest: Add bd prime hooks for better token efficiency\n\n4. **Migration path**\n - Show: 'Run bd setup claude to add SessionStart/PreCompact hooks'\n - Show: 'Update AGENTS.md to reference bd prime instead of slash commands'\n\n## Example output\n\nāš  Warning: Old beads integration detected in CLAUDE.md\n Found: /beads:* slash command references (deprecated)\n Recommend: Migrate to bd prime hooks for better token efficiency\n Fix: Run 'bd setup claude' and update CLAUDE.md\n\nšŸ’” Tip: bd prime + hooks reduces token usage by 80-99% vs slash commands\n MCP mode: ~50 tokens vs ~10.5k for full MCP scan\n CLI mode: ~1-2k tokens with automatic context recovery\n\n## Benefits\n- Helps existing repos adopt new best practices\n- Clear migration path for users\n- Better token efficiency messaging","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-12T03:20:25.567748-08:00","updated_at":"2025-11-12T03:20:25.567748-08:00"} -{"id":"bd-hvng","title":"Merge: bd-w193","description":"branch: polecat/nux\ntarget: main\nsource_issue: bd-w193\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:23:47.496139-08:00","updated_at":"2025-12-19T23:23:47.496139-08:00"} -{"id":"bd-si4g","title":"Verify release artifacts","description":"Check GitHub releases page - binaries for darwin/linux/windows should be available","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:04.183029-08:00","updated_at":"2025-12-20T00:25:52.720816-08:00","closed_at":"2025-12-20T00:25:52.720816-08:00","dependencies":[{"issue_id":"bd-si4g","depends_on_id":"bd-otli","type":"blocks","created_at":"2025-12-19T22:56:23.428507-08:00","created_by":"daemon"},{"issue_id":"bd-si4g","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.173619-08:00","created_by":"daemon"}]} -{"id":"bd-b3og","title":"Fix TestImportBugIntegration deadlock in importer_test.go","description":"Code health review found internal/importer/importer_test.go has TestImportBugIntegration skipped with:\n\nTODO: Test hangs due to database deadlock - needs investigation\n\nThis indicates a potential unresolved concurrency issue in the importer. The test has been skipped for an unknown duration.\n\nFix: Investigate the deadlock, fix the underlying issue, and re-enable the test.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T18:17:22.103838-08:00","updated_at":"2025-12-17T23:13:40.529671-08:00","closed_at":"2025-12-17T17:25:26.645901-08:00","dependencies":[{"issue_id":"bd-b3og","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.740642-08:00","created_by":"daemon"}]} -{"id":"bd-6pc","title":"Implement bd pin/unpin commands","description":"Add 'bd pin \u003cid\u003e' and 'bd unpin \u003cid\u003e' commands to toggle the pinned status of issues. Should support multiple IDs like other bd commands.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:28.292937-08:00","updated_at":"2025-12-19T17:43:35.713398-08:00","closed_at":"2025-12-19T00:35:31.612589-08:00","dependencies":[{"issue_id":"bd-6pc","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.119852-08:00","created_by":"daemon"},{"issue_id":"bd-6pc","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.352848-08:00","created_by":"daemon"}]} -{"id":"bd-usro","title":"Rename 'template instantiate' to 'mol bond'","description":"Rename the template instantiation command to match molecule metaphor.\n\nCurrent: bd template instantiate \u003cid\u003e --var key=value\nTarget: bd mol bond \u003cid\u003e --var key=value\n\nChanges needed:\n- Add 'mol' command group (or extend existing)\n- Add 'bond' subcommand that wraps template instantiate logic\n- Keep 'template instantiate' as deprecated alias for backward compat\n- Update help text and docs to use molecule terminology\n\nThe 'bond' verb captures:\n1. Chemistry metaphor (molecules bond to form structures)\n2. Dependency linking (child issues bonded in a DAG)\n3. Short and active\n\nSee also: molecule execution model in Gas Town","status":"open","priority":1,"issue_type":"feature","created_at":"2025-12-20T16:56:37.582795-08:00","updated_at":"2025-12-20T16:56:37.582795-08:00"} -{"id":"bd-lfak","title":"bd preflight: PR readiness checks for contributors","description":"## Vision\n\nEncode project-specific institutional knowledge into executable checks. CONTRIBUTING.md is documentation that's read once and forgotten; `bd preflight` is documentation that runs at exactly the right moment.\n\n## Problem Statement\n\nContributors face a \"last mile\" problem - they do the work but stumble on project-specific gotchas at PR time:\n- Nix vendorHash gets stale when go.sum changes\n- Beads artifacts leak into PRs (see bd-umbf for namespace solution)\n- Version mismatches between version.go and default.nix\n- Tests/lint not run locally before pushing\n- Other project-specific checks that only surface when CI fails\n\nThese are too obscure to remember, exist in docs nobody reads end-to-end, and waste CI round-trips.\n\n## Why beads?\n\nBeads already has a foothold in the contributor workflow. It knows:\n- Git state (staged files, branch, dirty status)\n- Project structure\n- The specific issue being worked on\n- Project-specific configuration\n\n## Proposed Interface\n\n### Tier 1: Checklist Mode (v1)\n\n $ bd preflight\n PR Readiness Checklist:\n\n [ ] Tests pass: go test -short ./...\n [ ] Lint passes: golangci-lint run ./...\n [ ] No beads pollution: check .beads/issues.jsonl diff\n [ ] Nix hash current: go.sum unchanged or vendorHash updated\n [ ] Version sync: version.go matches default.nix\n\n Run 'bd preflight --check' to validate automatically.\n\n### Tier 2: Check Mode (v2)\n\n $ bd preflight --check\n āœ“ Tests pass\n āœ“ Lint passes\n āš  Beads pollution: 3 issues in diff - are these project issues or personal?\n āœ— Nix hash stale: go.sum changed, vendorHash needs update\n Fix: sha256-KRR6dXzsSw8OmEHGBEVDBOoIgfoZ2p0541T9ayjGHlI=\n āœ“ Version sync\n\n 1 error, 1 warning. Run 'bd preflight --fix' to auto-fix where possible.\n\n### Tier 3: Fix Mode (v3)\n\n $ bd preflight --fix\n āœ“ Updated vendorHash in default.nix\n āš  Cannot auto-fix beads pollution - manual review needed\n\n## Checks to Implement\n\n| Check | Description | Auto-fixable |\n|-------|-------------|--------------|\n| tests | Run go test -short ./... | No |\n| lint | Run golangci-lint | Partial (gofmt) |\n| beads-pollution | Detect personal issues in diff | No (see bd-umbf) |\n| nix-hash | Detect stale vendorHash | Yes (if nix available) |\n| version-sync | version.go matches default.nix | Yes |\n| no-debug | No TODO/FIXME/console.log | Warn only |\n| clean-stage | No unintended files staged | Warn only |\n\n## Future: Configuration\n\nMake checks configurable per-project via .beads/preflight.yaml:\n\n preflight:\n checks:\n - name: tests\n run: go test -short ./...\n required: true\n - name: no-secrets\n pattern: \"**/*.env\"\n staged: deny\n - name: custom-check\n run: ./scripts/validate.sh\n\nThis lets any project using beads define their own preflight checks.\n\n## Implementation Phases\n\n### Phase 1: Static Checklist\n- Implement bd preflight with hardcoded checklist for beads\n- No execution, just prints what to check\n- Update CONTRIBUTING.md to reference it\n\n### Phase 2: Automated Checks\n- Implement bd preflight --check\n- Run tests, lint, detect stale hashes\n- Clear pass/fail/warn output\n\n### Phase 3: Auto-fix\n- Implement bd preflight --fix\n- Fix vendorHash, version sync\n- Integrate with bd-umbf solution for pollution\n\n### Phase 4: Configuration\n- .beads/preflight.yaml support\n- Make it useful for other projects using beads\n- Plugin/hook system for custom checks\n\n## Dependencies\n\n- bd-umbf: Namespace isolation for beads pollution (blocking for full solution)\n\n## Success Metrics\n\n- Fewer CI failures on first PR push\n- Reduced \"fix nix hash\" commits\n- Contributors report preflight caught issues before CI","status":"open","priority":2,"issue_type":"epic","created_at":"2025-12-13T18:01:39.587078-08:00","updated_at":"2025-12-13T18:01:39.587078-08:00","dependencies":[{"issue_id":"bd-lfak","depends_on_id":"bd-umbf","type":"blocks","created_at":"2025-12-13T18:01:46.059901-08:00","created_by":"daemon"}]} -{"id":"bd-a15d","title":"Add test files for internal/storage","description":"The internal/storage package has no test files at all. This package provides the storage interface abstraction.\n\nCurrent coverage: N/A (no test files)\nTarget: Add basic interface tests","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:11.363017-08:00","updated_at":"2025-12-13T21:01:20.925779-08:00"} -{"id":"bd-pbh.13","title":"Monitor GoReleaser CI job","description":"Watch the GoReleaser action:\nhttps://github.com/steveyegge/beads/actions/workflows/release.yml\n\nShould complete in ~10 minutes and create:\n- GitHub Release with binaries for all platforms\n- Checksums and signatures\n\nCheck status:\n```bash\ngh run list --workflow=release.yml -L 1\ngh run watch # to monitor live\n```\n\nVerify release exists:\n```bash\ngh release view v0.30.4\n```\n\n\n```verify\ngh release view v0.30.4 --json tagName -q .tagName | grep -q 'v0.30.4'\n```","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.074476-08:00","updated_at":"2025-12-17T21:46:46.311506-08:00","closed_at":"2025-12-17T21:46:46.311506-08:00","dependencies":[{"issue_id":"bd-pbh.13","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.074833-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.13","depends_on_id":"bd-pbh.12","type":"blocks","created_at":"2025-12-17T21:19:11.279092-08:00","created_by":"daemon"}]} -{"id":"bd-siz1","title":"GH#532: bd sync circular error (suggests running bd sync)","description":"bd sync error message recommends running bd sync to fix the bd sync error. Fix error handling to provide useful guidance. See GitHub issue #532.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:04:00.543573-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-jvu","title":"Add bd update --parent flag to change issue parent","description":"Allow changing an issue's parent with bd update --parent \u003cnew-parent-id\u003e. Useful for reorganizing tasks under different epics or moving issues between hierarchies. Should update the parent-child dependency relationship.","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-17T22:24:07.274485-08:00","updated_at":"2025-12-17T22:34:07.318938-08:00","closed_at":"2025-12-17T22:34:07.318938-08:00"} -{"id":"bd-pbh.12","title":"Push commit and tag to origin","description":"```bash\ngit push origin main\ngit push origin v0.30.4\n```\n\nThis triggers GitHub Actions:\n- GoReleaser build\n- PyPI publish\n- npm publish\n\n\n```verify\ngit ls-remote origin refs/tags/v0.30.4 | grep -q 'v0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.066074-08:00","updated_at":"2025-12-17T21:46:46.301948-08:00","closed_at":"2025-12-17T21:46:46.301948-08:00","dependencies":[{"issue_id":"bd-pbh.12","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.066442-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.12","depends_on_id":"bd-pbh.11","type":"blocks","created_at":"2025-12-17T21:19:11.265986-08:00","created_by":"daemon"}]} -{"id":"bd-fom","title":"Remove all deletions.jsonl code except migration","description":"There's deletions manifest code spread across the entire codebase that should have been removed after tombstone migration:\n\nFiles with deletions code (non-migration):\n- internal/deletions/ - entire package\n- cmd/bd/sync.go - 25+ references, auto-compact, sanitize\n- cmd/bd/delete.go - dual-writes to deletions.jsonl\n- internal/importer/importer.go - checks deletions manifest\n- internal/syncbranch/worktree.go - merges deletions.jsonl\n- cmd/bd/doctor/fix/sync.go - cleanupDeletionsManifest\n- cmd/bd/doctor/fix/deletions.go - HydrateDeletionsManifest\n- cmd/bd/integrity.go - checks deletions for data loss\n- cmd/bd/deleted.go - entire command\n- cmd/bd/compact.go - pruneDeletionsManifest\n- cmd/bd/doctor.go - checkDeletionsManifest\n- Plus many more\n\nAction: Aggressively remove all non-migration deletions code. Tombstones are the only deletion mechanism now.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T13:29:04.960863-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-pbh.19","title":"Install 0.30.4 MCP server locally","description":"Upgrade the MCP server (after PyPI publish):\n```bash\npip install --upgrade beads-mcp\n# OR if using uv:\nuv tool upgrade beads-mcp\n```\n\nVerify:\n```bash\npip show beads-mcp | grep Version\n```\n\n\n```verify\npip show beads-mcp 2\u003e/dev/null | grep -q 'Version: 0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.124496-08:00","updated_at":"2025-12-17T21:46:46.372989-08:00","closed_at":"2025-12-17T21:46:46.372989-08:00","dependencies":[{"issue_id":"bd-pbh.19","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.124829-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.19","depends_on_id":"bd-pbh.14","type":"blocks","created_at":"2025-12-17T21:19:11.343558-08:00","created_by":"daemon"}]} -{"id":"bd-lo4","title":"Test pinned issue","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-18T21:44:49.031385-08:00","updated_at":"2025-12-18T21:47:25.055109-08:00","deleted_at":"2025-12-18T21:47:25.055109-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-tbz3","title":"bd init UX Improvements","description":"bd init leaves users with incomplete setup, requiring manual bd doctor --fix. Issues found: (1) git hooks not installed if user declines prompt, (2) no auto-migration when CLI is upgraded, (3) stale merge driver configs from old versions. Fix by making bd init more robust with better defaults and auto-migration.","status":"open","priority":1,"issue_type":"epic","created_at":"2025-11-21T23:16:00.333543-08:00","updated_at":"2025-11-21T23:16:37.811233-08:00"} -{"id":"bd-wc2","title":"Test body-file","description":"This is a test description from a file.\n\nIt has multiple lines.\n","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T17:27:20.508724-08:00","updated_at":"2025-12-17T17:28:33.83142-08:00","closed_at":"2025-12-17T17:28:33.83142-08:00"} {"id":"bd-0kai","title":"Work on beads-ocs: Thin shim hooks to eliminate version d...","description":"Work on beads-ocs: Thin shim hooks to eliminate version drift (GH#615). Replace full hook scripts with thin shims that call bd hooks run. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:57:22.91347-08:00","updated_at":"2025-12-20T00:26:12.605248-08:00","closed_at":"2025-12-19T23:24:08.828172-08:00"} -{"id":"bd-in7","title":"Test message","description":"Hello world","status":"closed","priority":2,"issue_type":"message","created_at":"2025-12-17T23:16:13.184946-08:00","updated_at":"2025-12-18T17:42:26.000073-08:00","closed_at":"2025-12-17T23:37:38.563369-08:00"} -{"id":"bd-cbed9619.1","title":"Fix multi-round convergence for N-way collisions","description":"**Summary:** Multi-round collision resolution was identified as a critical issue preventing complete synchronization across distributed clones. The problem stemmed from incomplete final pulls that didn't fully propagate all changes between system instances.\n\n**Key Decisions:**\n- Implement multi-round sync mechanism\n- Ensure bounded convergence (ā‰¤N rounds)\n- Guarantee idempotent import without data loss\n\n**Resolution:** Developed a sync strategy that ensures all clones converge to the same complete set of issues, unblocking the bd-cbed9619 epic and improving distributed system reliability.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T21:22:21.486109-07:00","updated_at":"2025-12-17T23:18:29.111713-08:00","deleted_at":"2025-12-17T23:18:29.111713-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-au0.10","title":"Add global verbosity flags (--verbose, --quiet)","description":"Add consistent verbosity controls across all commands.\n\n**Current state:**\n- bd init has --quiet flag\n- No other commands have verbosity controls\n- Debug output controlled by BD_VERBOSE env var\n\n**Proposal:**\nAdd persistent flags:\n- --verbose / -v: Enable debug output\n- --quiet / -q: Suppress non-essential output\n\n**Implementation:**\n- Add to rootCmd.PersistentFlags()\n- Replace BD_VERBOSE checks with flag checks\n- Standardize output levels:\n * Quiet: Errors only\n * Normal: Errors + success messages\n * Verbose: Errors + success + debug info\n\n**Files to modify:**\n- cmd/bd/main.go (add flags)\n- internal/debug/debug.go (respect flags)\n- Update all commands to respect quiet mode\n\n**Testing:**\n- Verify --verbose shows debug output\n- Verify --quiet suppresses normal output\n- Ensure errors always show regardless of mode","status":"open","priority":3,"issue_type":"task","created_at":"2025-11-21T21:08:21.600209-05:00","updated_at":"2025-11-21T21:08:21.600209-05:00","dependencies":[{"issue_id":"bd-au0.10","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:08:21.602557-05:00","created_by":"daemon"}]} -{"id":"bd-dsdh","title":"Document sync.branch 'always dirty' working tree behavior","description":"## Context\n\nWhen sync.branch is configured, the .beads/issues.jsonl file in main's working tree is ALWAYS dirty. This is by design:\n\n1. bd sync commits to beads-sync branch (via worktree)\n2. bd sync copies JSONL to main's working tree (so CLI commands work)\n3. This copy is NOT committed to main (to reduce commit noise)\n\nContributors who watch main branch history pushed for sync.branch to avoid constant beads commit noise. But users need to understand the trade-off.\n\n## Documentation Needed\n\nUpdate README.md sync.branch section with:\n\n1. **Clear explanation** of why .beads/ is always dirty on main\n2. **\"Be Zen about it\"** - this is expected, not a bug\n3. **Workflow options:**\n - Accept dirty state, use `bd sync --merge` periodically to snapshot to main\n - Or disable sync.branch if clean working tree is more important\n4. **Shell alias tip** to hide beads from git status:\n ```bash\n alias gs='git status -- \":!.beads/\"'\n ```\n5. **When to merge**: releases, milestones, or periodic snapshots\n\n## Related\n\n- bd-7b7h: Fix that allows bd sync --merge to work with dirty .beads/\n- bd-elqd: Investigation that identified this as expected behavior","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T23:16:12.253559-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-cb64c226.8","title":"Update Metrics and Health Endpoints","description":"Remove cache-related metrics from health/metrics endpoints","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:49.212047-07:00","updated_at":"2025-12-17T23:18:29.110022-08:00","deleted_at":"2025-12-17T23:18:29.110022-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-hy9p","title":"Add --body-file flag to bd create for reading descriptions from files","description":"## Problem\n\nCreating issues with long/complex descriptions via CLI requires shell escaping gymnastics:\n\n```bash\n# Current workaround - awkward heredoc quoting\nbd create --title=\"...\" --description=\"$(cat \u003c\u003c'EOF'\n...markdown...\nEOF\n)\"\n\n# Often fails with quote escaping errors in eval context\n# Agents resort to writing temp files then reading them\n```\n\n## Proposed Solution\n\nAdd `--body-file` and `--description-file` flags to read description from a file, matching `gh` CLI pattern.\n\n```bash\n# Natural pattern that aligns with training data\ncat \u003e /tmp/desc.md \u003c\u003c 'EOF'\n...markdown content...\nEOF\n\nbd create --title=\"...\" --body-file=/tmp/desc.md\n```\n\n## Implementation\n\n### 1. Add new flags to `bd create`\n\n```go\ncreateCmd.Flags().String(\"body-file\", \"\", \"Read description from file (use - for stdin)\")\ncreateCmd.Flags().String(\"description-file\", \"\", \"Alias for --body-file\")\n```\n\n### 2. Flag precedence\n\n- If `--body-file` or `--description-file` is provided, read from file\n- If value is `-`, read from stdin\n- Otherwise fall back to `--body` or `--description` flag\n- If neither provided, description is empty (current behavior)\n\n### 3. Error handling\n\n- File doesn't exist ā†’ clear error message\n- File not readable ā†’ clear error message\n- stdin specified but not available ā†’ clear error message\n\n## Benefits\n\nāœ… **Matches training data**: `gh issue create --body-file file.txt` is a common pattern\nāœ… **No shell escaping issues**: File content is read directly\nāœ… **Works with any content**: Markdown, special characters, quotes, etc.\nāœ… **Agent-friendly**: Agents already write complex content to temp files\nāœ… **User-friendly**: Easier for humans too when pasting long descriptions\n\n## Related Commands\n\nConsider adding similar support to:\n- `bd update --body-file` (for updating descriptions)\n- `bd comment --body-file` (if/when we add comments)\n\n## Examples\n\n```bash\n# From file\nbd create --title=\"Add new feature\" --body-file=feature.md\n\n# From stdin\necho \"Quick description\" | bd create --title=\"Bug fix\" --body-file=-\n\n# With other flags\nbd create \\\n --title=\"Security issue\" \\\n --type=bug \\\n --priority=0 \\\n --body-file=security-report.md \\\n --label=security\n```\n\n## Testing\n\n- Test with normal files\n- Test with stdin (`-`)\n- Test with non-existent files (error handling)\n- Test with binary files (should handle gracefully)\n- Test with empty files (valid - empty description)\n- Test that `--description-file` and `--body-file` are equivalent aliases","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-11-22T00:02:08.762684-08:00","updated_at":"2025-12-17T23:13:40.536024-08:00","closed_at":"2025-12-17T17:28:52.505239-08:00"} -{"id":"bd-kpy","title":"Sync race: rebase-based divergence recovery resurrects tombstones","description":"## Problem\nWhen two repos sync simultaneously, tombstones can be resurrected:\n\n1. Repo A deletes issue (creates tombstone), pushes to sync branch\n2. Repo B (with 'closed' status) exports and tries to push\n3. Push fails (non-fast-forward)\n4. fetchAndRebaseInWorktree does git rebase\n5. Git rebase applies B's 'closed' patch on top of A's 'tombstone'\n6. TEXT-level rebase doesn't invoke beads merge driver\n7. 'closed' overwrites 'tombstone' = resurrection\n\n## Root Cause\nCommitToSyncBranch uses git rebase for divergence recovery, but rebase is text-level, not content-level. The proper content-level merge in PullFromSyncBranch handles tombstones correctly, but it runs AFTER the problematic push.\n\n## Proposed Fix\nOption 1: Don't push in CommitToSyncBranch - let PullFromSyncBranch handle merge+push\nOption 2: Replace git rebase with content-level merge in fetchAndRebaseInWorktree\nOption 3: Reorder sync steps: Export ā†’ Pull/Merge ā†’ Commit ā†’ Push\n\n## Workaround Applied\nExcluded tombstones from orphan detection warnings (commit 1e97d9cc).\n\nSee also: bd-3852 (Add orphan detection migration)","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-17T23:29:33.049272-08:00","updated_at":"2025-12-17T23:29:33.049272-08:00"} -{"id":"bd-o4qy","title":"Improve CheckStaleness error handling","description":"## Problem\n\nCheckStaleness returns 'false' (not stale) for multiple error conditions instead of returning errors. This masks problems.\n\n**Location:** internal/autoimport/autoimport.go:253-285\n\n## Edge Cases That Return False\n\n1. **Invalid last_import_time format** (line 259-262)\n2. **No JSONL file found** (line 267-277) \n3. **JSONL stat fails** (line 279-282)\n\n## Fix\n\nReturn errors for abnormal conditions:\n\n```go\nlastImportTime, err := time.Parse(time.RFC3339, lastImportStr)\nif err != nil {\n return false, fmt.Errorf(\"corrupted last_import_time: %w\", err)\n}\n\nif jsonlPath == \"\" {\n return false, fmt.Errorf(\"no JSONL file found\")\n}\n\nstat, err := os.Stat(jsonlPath)\nif err != nil {\n return false, fmt.Errorf(\"cannot stat JSONL: %w\", err)\n}\n```\n\n## Impact\nMedium - edge cases are rare but should be handled\n\n## Effort \n30 minutes - requires updating callers in RPC server","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-11-20T20:17:27.606219-05:00","updated_at":"2025-12-17T23:13:40.536905-08:00","closed_at":"2025-12-17T19:11:12.965289-08:00","dependencies":[{"issue_id":"bd-o4qy","depends_on_id":"bd-2q6d","type":"blocks","created_at":"2025-11-20T20:18:26.81065-05:00","created_by":"stevey"}]} -{"id":"bd-u0g9","title":"GH#405: Prefix parsing with hyphens treats first segment as prefix","description":"Prefix me-py-toolkit gets parsed as just me- when detecting mismatches. Fix prefix parsing to handle multi-hyphen prefixes. See GitHub issue #405.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:18.354066-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-kwro.1","title":"Schema: Add message type and new fields","description":"Add to internal/storage/sqlite/schema.go and models:\n\nNew issue_type value:\n- message\n\nNew optional fields on Issue struct:\n- Sender string (who sent this)\n- Ephemeral bool (can be bulk-deleted)\n- RepliesTo string (issue ID for threading)\n- RelatesTo []string (issue IDs for knowledge graph)\n- Duplicates string (canonical issue ID)\n- SupersededBy string (replacement issue ID)\n\nUpdate:\n- internal/storage/sqlite/schema.go - add columns\n- internal/models/issue.go - add fields to struct\n- internal/storage/sqlite/sqlite.go - CRUD operations\n- Create migration from v0.30.1\n\nEnsure backward compatibility - all new fields optional.","status":"tombstone","issue_type":"task","created_at":"2025-12-16T03:01:19.777604-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-aydr.4","title":"Implement CLI command (cmd/bd/reset.go)","description":"Wire up the reset command with Cobra CLI.\n\n## Responsibilities\n- Define command and all flags\n- User confirmation prompt (unless --force)\n- Display impact summary before confirmation\n- Colored output and progress indicators\n- Call core reset package\n- Handle errors with user-friendly messages\n- Register command with rootCmd in init()\n\n## Flags\n```go\n--hard bool \"Also remove from git and commit\"\n--force bool \"Skip confirmation prompt\"\n--backup bool \"Create backup before reset\"\n--dry-run bool \"Preview what would happen\"\n--skip-init bool \"Do not re-initialize after reset\"\n--verbose bool \"Show detailed progress output\"\n```\n\n## Output Format\n```\nāš ļø This will reset beads to a clean state.\n\nWill be deleted:\n ā€¢ 47 issues (23 open, 24 closed)\n ā€¢ 12 tombstones\n\nContinue? [y/N] y\n\nā†’ Stopping daemons... āœ“\nā†’ Removing .beads/... āœ“\nā†’ Initializing fresh... āœ“\n\nāœ“ Reset complete. Run 'bd onboard' to set up hooks.\n```\n\n## Implementation Notes\n- Confirmation logic lives HERE, not in core package\n- Use color package (github.com/fatih/color) for output\n- Follow patterns from other commands (init.go, doctor.go)\n- Add to rootCmd in init() function\n\n## File Location\n`cmd/bd/reset.go`","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:54.318854+11:00","updated_at":"2025-12-13T10:13:32.611434+11:00","closed_at":"2025-12-13T09:59:41.72638+11:00","dependencies":[{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:54.319237+11:00","created_by":"daemon"},{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr.1","type":"blocks","created_at":"2025-12-13T08:45:09.762138+11:00","created_by":"daemon"},{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr.2","type":"blocks","created_at":"2025-12-13T08:45:09.817854+11:00","created_by":"daemon"},{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr.3","type":"blocks","created_at":"2025-12-13T08:45:09.883658+11:00","created_by":"daemon"}]} -{"id":"bd-746","title":"Fix resolvePartialID stub in workflow.go","description":"The resolvePartialID function at workflow.go:921-925 is a stub that just returns the ID unchanged. Should use utils.ResolvePartialID for proper partial ID resolution in direct mode (non-daemon).","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-17T22:22:57.586917-08:00","updated_at":"2025-12-17T22:34:07.270168-08:00","closed_at":"2025-12-17T22:34:07.270168-08:00"} -{"id":"bd-6s61","title":"Version Bump: {{version}}","description":"Release checklist for version {{version}}. This molecule ensures all release steps are completed properly.","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-19T22:55:42.487701-08:00","updated_at":"2025-12-20T01:18:47.905306-08:00","closed_at":"2025-12-20T01:18:47.905306-08:00"} -{"id":"bd-otli","title":"Wait for CI to pass","description":"Monitor GitHub Actions - all checks must pass before release artifacts are built","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:03.022281-08:00","updated_at":"2025-12-20T00:25:52.635223-08:00","closed_at":"2025-12-20T00:25:52.635223-08:00","dependencies":[{"issue_id":"bd-otli","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.097564-08:00","created_by":"daemon"},{"issue_id":"bd-otli","depends_on_id":"bd-7tuu","type":"blocks","created_at":"2025-12-19T22:56:23.360436-08:00","created_by":"daemon"}]} -{"id":"bd-95k8","title":"Pinned field available in beads v0.37.0","description":"Hey max,\n\nHeads up on your mail overhaul work:\n\n1. **Pinned field is available** - beads v0.37.0 (released by dave earlier) includes the pinned field on issues. You'll want to add this to BeadsMessage in types.go.\n\n2. **Database migration** - Check if existing .beads databases need migration to support the pinned field. Run `bd doctor` to see if it flags anything.\n\n3. **Sorting task** - Once you have the pinned field, gt-ngu1 (pinned beads first in mail inbox) needs implementing. Since messages now come from `bd list --type=message`, you'll need to either:\n - Sort in listBeads() after fetching, or\n - Ensure bd list returns pinned items first (may already do this?)\n\nCheck what version of bd you're building against.\n\n-- Mayor","status":"open","priority":2,"issue_type":"message","created_at":"2025-12-20T17:51:57.315956-08:00","updated_at":"2025-12-20T17:51:57.315956-08:00"} -{"id":"bd-ndye","title":"mergeDependencies uses union instead of 3-way merge","description":"## Critical Bug\n\nThe `mergeDependencies` function in internal/merge/merge.go performs a UNION of left and right dependencies instead of a proper 3-way merge. This causes removed dependencies to be resurrected.\n\n### Root Cause\n\n```go\n// Current code (lines 795-816):\nfunc mergeDependencies(left, right []Dependency) []Dependency {\n // Just unions left + right\n // NEVER REMOVES anything\n // Doesn't even look at base!\n}\n```\n\nAnd `mergeIssue` (line 579) doesn't pass `base`:\n```go\nresult.Dependencies = mergeDependencies(left.Dependencies, right.Dependencies)\n```\n\n### Impact\n\nIf:\n- Base has dependency D\n- Left removes D (intentional)\n- Right still has D (stale)\n\nCurrent: D is in result (resurrection!)\nCorrect: Left removed it, D should NOT be in result\n\nThis breaks Gas Town's workflow and data integrity. Closed means closed.\n\n### Fix\n\nChange `mergeDependencies` to take `base` and do proper 3-way merge:\n- If dep was in base and removed by left ā†’ exclude (left wins)\n- If dep was in base and removed by right ā†’ exclude (right wins)\n- If dep wasn't in base and added by either ā†’ include\n- If dep was in base and both still have it ā†’ include\n\nKey principle: **REMOVALS ARE AUTHORITATIVE**\n\n### Files to Change\n\n1. internal/merge/merge.go:\n - `mergeDependencies(left, right)` ā†’ `mergeDependencies(base, left, right)`\n - `mergeIssue` line 579: pass `base.Dependencies`\n\n### Related\n\nThis also explains why `ProtectLocalExportIDs` in importer is defined but never used - the protection was never actually implemented.","status":"closed","issue_type":"bug","created_at":"2025-12-18T23:15:54.475872-08:00","updated_at":"2025-12-18T23:21:10.709571-08:00","closed_at":"2025-12-18T23:21:10.709571-08:00"} -{"id":"bd-n777","title":"Timer beads for scheduled agent callbacks","description":"## Problem\n\nAgents frequently need to wait for external events (CI completion, PR reviews, artifact builds) but have no good mechanism:\n- `sleep N` blocks and is unreliable (often times out at 8+ minutes)\n- Polling wastes context and is easy to forget\n- No way to survive session restarts\n\n## Proposal: Timer Beads\n\nA new bead type or field that represents a scheduled callback:\n\n### Creating timers\n```bash\nbd timer create --in 30s --callback \"Check CI run 12345\" --issue bd-xyz\nbd timer create --at \"2025-12-20T08:00:00\" --callback \"Morning standup\"\nbd timer create --in 5m --on-expire \"tmux send-keys -t dave 'bd show bd-xyz'\"\n```\n\n### Timer storage\n- Store in beads (survives restarts)\n- Fields: `expires_at`, `callback_description`, `on_expire_command`, `linked_issue`\n- Status: pending, fired, cancelled\n\n### Deacon integration\nThe Deacon daemon monitors timer beads:\n1. Wakes on next timer expiry\n2. Executes `on_expire` command (e.g., tmux send-keys to interrupt agent)\n3. Marks timer as fired\n4. Optionally updates linked issue\n\n### Use cases\n- CI monitoring: \"ping me when build completes\"\n- PR reviews: \"check back in 1 hour\"\n- Scheduled tasks: \"remind me at EOD to sync\"\n- Blocking waits: agent registers callback instead of sleeping\n\n## Acceptance criteria\n- [ ] Timer bead type or field design\n- [ ] `bd timer create/list/cancel` commands\n- [ ] Deacon timer monitoring loop\n- [ ] tmux integration for agent interrupts\n- [ ] Survives daemon restarts","status":"open","priority":2,"issue_type":"feature","created_at":"2025-12-19T23:05:33.051861-08:00","updated_at":"2025-12-19T23:05:33.051861-08:00"} -{"id":"bd-56x","title":"Review PR #514: fix plugin install docs","description":"Review and merge PR #514 from aspiers. This PR fixes incorrect docs for installing Claude Code plugin from source in docs/PLUGIN.md. Clarifies shell vs Claude Code commands and fixes the . vs ./beads argument issue. URL: https://github.com/anthropics/beads/pull/514","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:15:16.865354+11:00","updated_at":"2025-12-13T07:07:19.729213-08:00","closed_at":"2025-12-13T07:07:19.729213-08:00"} -{"id":"bd-c3u","title":"Review PR #512: clarify bd ready docs","description":"Review and merge PR #512 from aspiers. This PR clarifies what bd ready does after git pull in README.md. Simple 1-line change. URL: https://github.com/anthropics/beads/pull/512","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:15:13.405161+11:00","updated_at":"2025-12-13T07:07:29.641265-08:00","closed_at":"2025-12-13T07:07:29.641265-08:00"} -{"id":"bd-3852","title":"Add orphan detection migration","description":"Create migration to detect orphaned children in existing databases. Query: SELECT id FROM issues WHERE id LIKE '%.%' AND substr(id, 1, instr(id || '.', '.') - 1) NOT IN (SELECT id FROM issues). Log results, let user decide action (delete orphans or convert to top-level).","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-04T12:32:30.727044-08:00","updated_at":"2025-11-04T12:32:30.727044-08:00"} -{"id":"bd-5qim","title":"Optimize GetReadyWork performance - 752ms on 10K database (target: \u003c50ms)","notes":"# Performance Analysis (10K Issue Database)\n\nAnalyzed using CPU profiles from benchmark suite on Apple M2 Pro.\n\n## Operation Performance\n\n| Operation | Time | Allocations | Memory |\n|----------------------------------|---------|-------------|--------|\n| bd ready (GetReadyWork) | ~752ms | 167,466 | 16MB |\n| bd list (SearchIssues no filter) | ~11.6ms | 89,214 | 5.8MB |\n| bd list (SearchIssues filtered) | ~9.2ms | 62,365 | 3.5MB |\n| bd create (CreateIssue) | ~2.6ms | 146 | 8.6KB |\n| bd update (UpdateIssue) | ~0.32ms | 364 | 15KB |\n| bd close (UpdateIssue) | ~0.32ms | 364 | 15KB |\n\n**Target: \u003c50ms for all operations on 10K database**\n\n**Current issue: GetReadyWork is 15x over target (752ms vs 50ms)**\n\n## Root Cause\n\nGetReadyWork (internal/storage/sqlite/ready.go:90-128) uses recursive CTE to propagate blocking:\n- 65x slower than SearchIssues\n- Recalculates entire blocked issue tree on every call\n- Algorithm:\n 1. Find directly blocked issues via 'blocks' dependencies\n 2. Recursively propagate blockage to descendants (max depth: 50)\n 3. Exclude all blocked issues from results\n\n## CPU Profile Analysis\n\n- Database syscalls (pthread_cond_signal, syscall6): ~75%\n- SQLite engine overhead: inherent to recursive CTE\n- Application code (query construction): \u003c1%\n\n**Bottleneck is the recursive CTE query execution, not application code.**\n\n## Optimization Recommendations\n\n### High Impact (Likely to achieve \u003c50ms target)\n\n1. **Cache blocked issue calculation**\n - Add `blocked_issues` table updated on dependency changes\n - Trade write complexity for read speed (ready called \u003e\u003e dependency changes)\n - Eliminates recursive CTE on every read\n\n2. **Add/verify database indexes**\n ```sql\n CREATE INDEX IF NOT EXISTS idx_dependencies_blocked \n ON dependencies(issue_id, type, depends_on_id);\n CREATE INDEX IF NOT EXISTS idx_issues_status \n ON issues(status);\n ```\n\n### Medium Impact\n\n3. **Reduce allocations** (167K allocations for GetReadyWork)\n - Profile `scanIssues()` for object pooling opportunities\n - Reuse slice capacity for repeated calls\n\n### Low Impact (Not recommended)\n- Query optimization for CRUD operations (already \u003c3ms)\n- Connection pooling tuning (not showing in profiles)\n\n## Verification\n\nRun benchmarks to validate optimization:\n```bash\nmake bench-quick\ngo tool pprof -http=:8080 internal/storage/sqlite/bench-cpu-*.prof\n```\n\nProfile files automatically generated in `internal/storage/sqlite/`.","status":"closed","issue_type":"bug","created_at":"2025-11-14T09:02:46.507526-08:00","updated_at":"2025-12-17T23:13:40.534258-08:00","closed_at":"2025-12-17T16:21:37.918868-08:00"} -{"id":"bd-14ie","title":"Work on beads-2vn: Add simple built-in beads viewer (GH#6...","description":"Work on beads-2vn: Add simple built-in beads viewer (GH#654). Add bd list --pretty with --watch flag, tree view with priority/status symbols. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:47.305831-08:00","updated_at":"2025-12-20T00:26:12.605897-08:00","closed_at":"2025-12-19T23:23:13.928323-08:00"} -{"id":"bd-dqu8","title":"Restart running daemons","description":"Kill and restart any running bd daemons to pick up new version: pkill -f 'bd daemon' \u0026\u0026 bd daemon --start","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T00:32:26.559311-08:00","updated_at":"2025-12-20T00:32:59.123766-08:00","closed_at":"2025-12-20T00:32:59.123766-08:00","dependencies":[{"issue_id":"bd-dqu8","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-20T00:32:39.36213-08:00","created_by":"daemon"},{"issue_id":"bd-dqu8","depends_on_id":"bd-fgw3","type":"blocks","created_at":"2025-12-20T00:32:39.427846-08:00","created_by":"daemon"}]} -{"id":"bd-rupw","title":"Run bump-version.sh 0.30.7","description":"Run ./scripts/bump-version.sh 0.30.7 to update version in all files","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649647-08:00","updated_at":"2025-12-19T22:57:31.512956-08:00","closed_at":"2025-12-19T22:57:31.512956-08:00","dependencies":[{"issue_id":"bd-rupw","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.653475-08:00","created_by":"stevey"}]} -{"id":"bd-6gd","title":"Remove legacy MCP Agent Mail integration","description":"## Summary\n\nRemove the legacy MCP Agent Mail system that requires an external HTTP server. Keep the native `bd mail` system which stores messages as git-synced issues.\n\n## Background\n\nTwo mail systems exist in the codebase:\n1. **Legacy Agent Mail** (`bd message`) - External server dependency, complex setup\n2. **Native bd mail** (`bd mail`) - Built-in, git-synced, no dependencies\n\nThe legacy system causes confusion and is no longer needed. Gas Town's Town Mail will use the native `bd mail` system.\n\n## Files to Delete\n\n### CLI Command\n- [ ] `cmd/bd/message.go` - The `bd message` command implementation\n\n### MCP Integration\n- [ ] `integrations/beads-mcp/src/beads_mcp/mail.py` - HTTP wrapper for Agent Mail server\n- [ ] `integrations/beads-mcp/src/beads_mcp/mail_tools.py` - MCP tool definitions\n- [ ] `integrations/beads-mcp/tests/test_mail.py` - Tests for legacy mail\n\n### Documentation\n- [ ] `docs/AGENT_MAIL.md`\n- [ ] `docs/AGENT_MAIL_QUICKSTART.md`\n- [ ] `docs/AGENT_MAIL_DEPLOYMENT.md`\n- [ ] `docs/AGENT_MAIL_MULTI_WORKSPACE_SETUP.md`\n- [ ] `docs/adr/002-agent-mail-integration.md`\n\n## Code to Update\n\n- [ ] Remove `message` command registration from `cmd/bd/main.go`\n- [ ] Remove mail tool imports/registration from MCP server `__init__.py` or `server.py`\n- [ ] Check for any other references to Agent Mail in the codebase\n\n## Verification\n\n- [ ] `bd message` command no longer exists\n- [ ] `bd mail` command still works\n- [ ] MCP server starts without errors\n- [ ] Tests pass\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T23:04:04.099935-08:00","updated_at":"2025-12-17T23:13:24.128752-08:00","closed_at":"2025-12-17T23:13:24.128752-08:00"} -{"id":"bd-pbh.1","title":"Update cmd/bd/version.go to 0.30.4","description":"Update the Version constant in cmd/bd/version.go:\n```go\nVersion = \"0.30.4\"\n```\n\n\n```verify\ngrep -q 'Version = \"0.30.4\"' cmd/bd/version.go\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.9462-08:00","updated_at":"2025-12-17T21:46:46.20387-08:00","closed_at":"2025-12-17T21:46:46.20387-08:00","dependencies":[{"issue_id":"bd-pbh.1","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.946633-08:00","created_by":"daemon"}]} -{"id":"bd-7m16","title":"GH#519: bd sync fails when sync.branch is currently checked-out branch","description":"bd sync tries to create worktree for sync.branch even when already on that branch. Should commit directly instead. See GitHub issue #519.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:36.613211-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-muw","title":"Add empty tasks validation in workflow create","description":"workflow.go:321 will panic if wf.Tasks is empty. Add validation that len(wf.Tasks) \u003e 0 before accessing wf.Tasks[0].","status":"closed","priority":3,"issue_type":"bug","created_at":"2025-12-17T22:23:00.75707-08:00","updated_at":"2025-12-17T22:34:07.281133-08:00","closed_at":"2025-12-17T22:34:07.281133-08:00"} -{"id":"bd-kwro.10","title":"Tests for messaging and graph links","description":"Comprehensive test coverage for all new features.\n\nTest files:\n- cmd/bd/mail_test.go - mail command tests\n- internal/storage/sqlite/graph_links_test.go - graph link tests\n- internal/hooks/hooks_test.go - hook execution tests\n\nTest cases:\n- Mail send/inbox/read/ack lifecycle\n- Thread creation and traversal (replies_to)\n- Bidirectional relates_to\n- Duplicate marking and queries\n- Supersedes chains\n- Ephemeral cleanup\n- Identity resolution priority\n- Hook execution (mock hooks)\n- Schema migration preserves data\n\nTarget: \u003e80% coverage on new code","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T03:02:34.050136-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-4hn","title":"wish: list \u0026 ready show issues as hierarchy tree","description":"`bd ready` and `bd list` just show a flat list, and it's up to the reader to parse which ones are dependent or sub-issues of others. It would be much easier to understand if they were shown in a tree format","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-08T06:38:24.016316945-07:00","updated_at":"2025-12-08T06:39:04.065882225-07:00"} -{"id":"bd-hlsw","title":"Add sync resilience guardrails for forced pushes and prefix mismatches","description":"Beads can get into unrecoverable sync states when remote forces pushes occur (e.g., rebases) combined with prefix mismatches from multi-worker scenarios. Add detection, prevention, and auto-recovery features to handle this gracefully.","status":"open","priority":2,"issue_type":"epic","created_at":"2025-12-14T10:40:14.872875259-07:00","updated_at":"2025-12-14T10:40:14.872875259-07:00"} -{"id":"bd-f5cc","title":"Thread Test","description":"Testing the thread feature","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:01.244501-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-f5cc","depends_on_id":"bd-x36g","type":"supersedes","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} -{"id":"bd-bxha","title":"Default to YES for git hooks and merge driver installation","description":"Currently bd init prompts user to install git hooks and merge driver, but setup is incomplete if user declines. Change to install by default unless --skip-hooks or --skip-merge-driver flags are passed. Better safe defaults. If installation fails, warn user and suggest bd doctor --fix.","status":"open","priority":1,"issue_type":"feature","created_at":"2025-11-21T23:16:10.172238-08:00","updated_at":"2025-11-21T23:16:28.369137-08:00","dependencies":[{"issue_id":"bd-bxha","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:10.173034-08:00","created_by":"daemon"}]} -{"id":"bd-z86n","title":"Code Review: PR #551 - Persist close_reason to issues table","description":"Code review of PR #551 which fixes close_reason persistence bug.\n\n## Summary\nThe PR correctly fixes a bug where close_reason was only stored in the events table, not in the issues.close_reason column. This caused `bd show --json` to return empty close_reason.\n\n## What Was Fixed\n- āœ… CloseIssue now updates both close_reason and closed_at\n- āœ… ReOpenIssue clears both close_reason and closed_at\n- āœ… Comprehensive tests added for both storage and CLI layers\n- āœ… Clear documentation in queries.go about dual storage strategy\n\n## Quality Assessment\nāœ… Tests cover both storage layer and CLI JSON output\nāœ… Handles reopen case (clearing close_reason)\nāœ… Good comments explaining dual-storage design\nāœ… No known issues\n\n## Potential Followups\nSee linked issues for suggestions.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:06.887069-08:00","updated_at":"2025-12-14T14:25:06.887069-08:00"} -{"id":"bd-3sz0","title":"Auto-repair stale merge driver configs with invalid placeholders","description":"Old bd versions (\u003c0.24.0) installed merge driver with invalid placeholders %L %R instead of %A %B. Add detection to bd doctor --fix: check if git config merge.beads.driver contains %L or %R, auto-repair to 'bd merge %A %O %A %B'. One-time migration for users who initialized with old versions.","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-21T23:16:10.762808-08:00","updated_at":"2025-11-21T23:16:28.892655-08:00","dependencies":[{"issue_id":"bd-3sz0","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:10.763612-08:00","created_by":"daemon"}]} -{"id":"bd-svb5","title":"GH#505: Add bd reset/wipe command","description":"Add command to cleanly reset/wipe beads database. User reports painful manual process to start fresh. See GitHub issue #505.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:03:42.160966-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} -{"id":"bd-pbh.4","title":"Update .claude-plugin/plugin.json to 0.30.4","description":"Update version field in .claude-plugin/plugin.json:\n```json\n\"version\": \"0.30.4\"\n```\n\n\n```verify\njq -e '.version == \"0.30.4\"' .claude-plugin/plugin.json\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.976866-08:00","updated_at":"2025-12-17T21:46:46.23159-08:00","closed_at":"2025-12-17T21:46:46.23159-08:00","dependencies":[{"issue_id":"bd-pbh.4","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.97729-08:00","created_by":"daemon"}]} -{"id":"bd-xj2e","title":"GH#522: Add --type flag to bd update command","description":"Add --type flag to bd update for changing issue type (task/epic/bug/feature). Storage layer already supports it. See GitHub issue #522.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:12.506583-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-e1085716","title":"bd validate - Comprehensive health check","description":"Run all validation checks in one command.\n\nChecks:\n- Duplicates\n- Orphaned dependencies\n- Test pollution\n- Git conflicts\n\nSupports --fix-all for auto-repair.\n\nDepends on bd-cbed9619.1, bd-0dcea000, bd-31aab707, bd-9826b69a.\n\nFiles: cmd/bd/validate.go (new)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-10-29T23:05:13.980679-07:00","updated_at":"2025-12-17T22:58:34.562008-08:00","closed_at":"2025-12-17T22:58:34.562008-08:00"} -{"id":"bd-5b6e","title":"Add tests for helper functions (GetDirtyIssueHash, GetAllDependencyRecords, export hashes)","description":"Several utility functions have 0% coverage:\n- GetDirtyIssueHash (dirty.go)\n- GetAllDependencyRecords (dependencies.go)\n- GetExportHash, SetExportHash, ClearAllExportHashes (hash.go)\n\nThese are lower priority but should have basic coverage.","status":"open","priority":4,"issue_type":"task","created_at":"2025-11-01T22:40:58.989976-07:00","updated_at":"2025-11-01T22:40:58.989976-07:00"} -{"id":"bd-d148","title":"GH#483: Pre-commit hook fails unnecessarily when .beads removed","description":"Pre-commit hook fails on bd sync when .beads directory exists but user is on branch without beads. Should exit gracefully. See GitHub issue #483.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:40.049785-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-eyrh","title":"šŸ¤ HANDOFF: Review remaining beads PRs","description":"## Current State\nJust merged PR #653 (doctor refactor) and added tests to restore coverage.\n\n## Remaining Open PRs to Review\nRun `gh pr list --repo steveyegge/beads` to see current list. As of handoff:\n\n1. #655 - feat: Linear Integration (jblwilliams)\n2. #651 - feat(audit): agent audit trail (dchichkov)\n3. #648 - Stop init creating redundant @AGENTS.md (maphew)\n4. #646 - fix(unix): handle Statfs field types (jordanhubbard)\n5. #645 - feat: /plan-to-beads Claude Code command (petebytes)\n6. #642, #641, #640 - sync branch fixes (cpdata)\n\n## Review Checklist\n- Check CI status with `gh pr checks \u003cnum\u003e --repo steveyegge/beads`\n- Verify no .beads/ data leaking (we have a hook now)\n- Review code quality\n- Merge good ones, request changes on problematic ones\n\n## Notes\n- User wants us to be proactive about merging good PRs\n- Can add tests ourselves if coverage drops","status":"closed","priority":2,"issue_type":"message","created_at":"2025-12-19T17:44:34.149837-08:00","updated_at":"2025-12-19T23:20:44.79446-08:00","closed_at":"2025-12-19T17:53:20.386937-08:00"} -{"id":"bd-cbed9619.2","title":"Implement content-first idempotent import","description":"**Summary:** Refactored issue import to be content-first and idempotent, ensuring consistent data synchronization across multiple import rounds by prioritizing content hash matching over ID-based updates.\n\n**Key Decisions:** \n- Implement content hash as primary matching mechanism\n- Create global collision resolution algorithm\n- Ensure importing same data multiple times results in no-op\n\n**Resolution:** The new import strategy guarantees predictable convergence across distributed systems, solving rename detection and collision handling while maintaining data integrity during multi-stage imports.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:38:25.671302-07:00","updated_at":"2025-12-17T23:18:29.112032-08:00","dependencies":[{"issue_id":"bd-cbed9619.2","depends_on_id":"bd-cbed9619.5","type":"blocks","created_at":"2025-10-28T18:39:28.360026-07:00","created_by":"daemon"},{"issue_id":"bd-cbed9619.2","depends_on_id":"bd-cbed9619.4","type":"blocks","created_at":"2025-10-28T18:39:28.383624-07:00","created_by":"daemon"},{"issue_id":"bd-cbed9619.2","depends_on_id":"bd-cbed9619.3","type":"blocks","created_at":"2025-10-28T18:39:28.407157-07:00","created_by":"daemon"}],"deleted_at":"2025-12-17T23:18:29.112032-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-aydr.1","title":"Implement core reset package (internal/reset)","description":"Create the core reset logic in internal/reset/ package.\n\n## Responsibilities\n- ResetOptions struct with all flag options\n- CountImpact() - count issues/tombstones that will be deleted\n- ValidateState() - check .beads/ exists, check git dirty state\n- ExecuteReset() - main reset logic (without CLI concerns)\n- Integrate with daemon killall\n\n## Interface Design\n```go\ntype ResetOptions struct {\n Hard bool // Include git operations (git rm, commit)\n Backup bool // Create backup before reset\n DryRun bool // Preview only, don't execute\n SkipInit bool // Don't re-initialize after reset\n}\n\ntype ResetResult struct {\n IssuesDeleted int\n TombstonesDeleted int\n BackupPath string // if backup was created\n DaemonsKilled int\n}\n\ntype ImpactSummary struct {\n IssueCount int\n OpenCount int\n ClosedCount int\n TombstoneCount int\n HasUncommitted bool // git dirty state\n}\n\nfunc Reset(opts ResetOptions) (*ResetResult, error)\nfunc CountImpact() (*ImpactSummary, error)\nfunc ValidateState() error\n```\n\n## IMPORTANT: CLI vs Core Separation\n- `Force` (skip confirmation) is NOT in ResetOptions - that's a CLI concern\n- Core always executes when called; CLI decides whether to prompt first\n- Keep CLI-agnostic: no prompts, no colored output, no user interaction\n- Return errors for CLI to handle with user-friendly messages\n- Unit testable in isolation\n\n## Dependencies\n- Uses daemon.KillAllDaemons() from internal/daemon/\n- Calls bd init logic after reset (unless SkipInit)","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:50.145364+11:00","updated_at":"2025-12-13T10:13:32.610253+11:00","closed_at":"2025-12-13T09:20:06.184893+11:00","dependencies":[{"issue_id":"bd-aydr.1","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:50.145775+11:00","created_by":"daemon"}]} -{"id":"bd-w193","title":"Work on beads-399: Add omitempty to JSONL fields for smal...","description":"Work on beads-399: Add omitempty to JSONL fields for smaller notifications. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:37.440894-08:00","updated_at":"2025-12-20T00:26:12.607705-08:00","closed_at":"2025-12-19T23:23:09.542288-08:00"} -{"id":"bd-hnkg","title":"GH#540: Add silent quick-capture mode (bd q)","description":"Add bd q alias for quick capture that outputs only issue ID. Useful for piping/scripting. See GitHub issue #540.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:03:38.260135-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} -{"id":"bd-kwro.5","title":"Graph Link: supersedes for version chains","description":"Implement supersedes link type for version tracking.\n\nNew command:\n- bd supersede \u003cid\u003e --with \u003cnew\u003e - marks id as superseded by new\n- Auto-closes the superseded issue\n\nQuery support:\n- bd show \u003cid\u003e shows 'Superseded by: \u003cnew\u003e'\n- bd show \u003cnew\u003e shows 'Supersedes: \u003cid\u003e'\n- bd list --superseded shows version chains\n\nStorage:\n- superseded_by column pointing to replacement issue\n\nUseful for design docs, specs, and evolving artifacts.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:41.749294-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-aydr.7","title":"Add integration tests for bd reset command","description":"End-to-end integration tests for the reset command.\n\n## Test Scenarios\n\n### Basic reset\n1. Init beads, create some issues\n2. Run bd reset --force\n3. Verify .beads/ is fresh, issues gone\n\n### Hard reset\n1. Init beads, create issues, commit\n2. Run bd reset --hard --force \n3. Verify git history has reset commits\n\n### Backup functionality\n1. Init beads, create issues\n2. Run bd reset --backup --force\n3. Verify backup exists with correct contents\n4. Verify main .beads/ is reset\n\n### Dry run\n1. Init beads, create issues\n2. Run bd reset --dry-run\n3. Verify nothing changed\n\n### Confirmation prompt\n1. Init beads\n2. Run bd reset (no --force)\n3. Verify prompts for confirmation\n4. Test both y and n responses\n\n## Location\ntests/integration/reset_test.go or similar","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:58.479282+11:00","updated_at":"2025-12-13T06:24:29.561908-08:00","closed_at":"2025-12-13T10:15:59.221637+11:00","dependencies":[{"issue_id":"bd-aydr.7","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:58.479686+11:00","created_by":"daemon"},{"issue_id":"bd-aydr.7","depends_on_id":"bd-aydr.4","type":"blocks","created_at":"2025-12-13T08:45:11.15972+11:00","created_by":"daemon"}]} -{"id":"bd-ao0s","title":"bd graph crashes with --no-daemon on closed issues","description":"The `bd graph` command panics with nil pointer dereference when using `--no-daemon` flag on an issue with closed children.\n\n**Reproduction:**\n```bash\nbd graph bd-qqc --no-daemon\n# panic: runtime error: invalid memory address or nil pointer dereference\n# in main.computeDependencyCounts\n```\n\n**Stack trace:**\n```\npanic: runtime error: invalid memory address or nil pointer dereference\n[signal SIGSEGV: segmentation violation code=0x2 addr=0x20 pc=0x1010bdfb0]\n\ngoroutine 1 [running]:\nmain.computeDependencyCounts(...)\n /Users/stevey/gt/beads/crew/emma/cmd/bd/graph.go:428\nmain.renderGraph(0x1400033bb80, 0x0)\n /Users/stevey/gt/beads/crew/emma/cmd/bd/graph.go:307 +0x300\n```\n\n**Location:** cmd/bd/graph.go:428 - computeDependencyCounts() not handling nil case","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-18T22:57:36.972585-08:00","updated_at":"2025-12-18T22:57:36.972585-08:00"} -{"id":"bd-kwro.9","title":"Cleanup: --ephemeral flag","description":"Update bd cleanup to handle ephemeral issues.\n\nNew flag:\n- bd cleanup --ephemeral - deletes all CLOSED issues with ephemeral=true\n\nBehavior:\n- Only deletes if status=closed AND ephemeral=true\n- Respects --dry-run flag\n- Reports count of deleted ephemeral issues\n\nThis allows swarm cleanup to remove transient messages without affecting permanent issues.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T03:02:28.563871-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-eyto","title":"Time-dependent tests may be flaky near TTL boundary","description":"Several tombstone merge tests use time.Now() to create test data: time.Now().Add(-24 * time.Hour), time.Now().Add(-60 * 24 * time.Hour), etc. While these work reliably in practice (24h vs 30d TTL has large margin), they could theoretically be flaky if: 1) Tests run slowly, 2) System clock changes during test, 3) TTL constants change. Recommendation: Consider using a fixed reference time or time injection for deterministic tests. Lower priority since current margin is large. Files: internal/merge/merge_test.go:1337-1338, 1352-1353, 1548-1549, 1590-1591","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-05T16:37:02.348143-08:00","updated_at":"2025-12-05T16:37:02.348143-08:00"} -{"id":"bd-tm2p","title":"Polecats get stuck on interactive shell prompts (cp/mv/rm -i)","description":"During swarm operations, polecats frequently get stuck waiting for interactive prompts from shell commands like:\n- cp prompting 'overwrite file? (y/n)'\n- mv prompting 'overwrite file? (y/n)' \n- rm prompting 'remove file?'\n\nThis happens because macOS aliases or shell configs may have -i flags set by default.\n\nRoot cause: Claude Code runs commands that trigger interactive confirmation prompts, but cannot respond to them, causing the agent to hang indefinitely.\n\nObserved in: Multiple polecats during GH issues swarm (Dec 2024)\n- Derrick, Roustabout, Prospector, Warboy all got stuck on y/n prompts\n\nSuggested fixes:\n1. AGENTS.md should instruct agents to always use -f flag with cp/mv/rm\n2. Polecat startup could set shell aliases to use non-interactive versions\n3. bd prime hook could include guidance about non-interactive commands\n4. Consider detecting stuck prompts and auto-recovering","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-14T16:51:24.572271-08:00","updated_at":"2025-12-17T23:13:40.536312-08:00","closed_at":"2025-12-17T19:13:04.074424-08:00"} -{"id":"bd-2oo.2","title":"Remove redundant edge fields from Issue struct","description":"Remove from Issue struct:\n- RepliesTo -\u003e dependency with type replies-to\n- RelatesTo -\u003e dependencies with type relates-to \n- DuplicateOf -\u003e dependency with type duplicates\n- SupersededBy -\u003e dependency with type supersedes\n\nKeep: Sender, Ephemeral (these are attributes, not relationships)","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:00.891206-08:00","updated_at":"2025-12-18T02:49:10.584381-08:00","closed_at":"2025-12-18T02:49:10.584381-08:00","dependencies":[{"issue_id":"bd-2oo.2","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:00.891655-08:00","created_by":"daemon"}]} -{"id":"bd-qqc.1","title":"Update version to {{version}} in version.go","description":"Edit cmd/bd/version.go line 17:\n\n```go\nVersion = \"{{version}}\"\n```\n\nVerify with: `grep 'Version =' cmd/bd/version.go`","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:13.887087-08:00","updated_at":"2025-12-18T23:34:18.630067-08:00","closed_at":"2025-12-18T22:41:41.82664-08:00","dependencies":[{"issue_id":"bd-qqc.1","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:13.887655-08:00","created_by":"stevey"}]} -{"id":"bd-zwtq","title":"Run bd doctor at end of bd init to verify setup","description":"Run bd doctor diagnostics at end of bd init (after line 398 in init.go). If issues found, warn user immediately: 'āš  Setup incomplete. Run bd doctor --fix to complete setup.' Catches configuration problems before user encounters them in normal workflow.","status":"open","priority":1,"issue_type":"feature","created_at":"2025-11-21T23:16:09.596778-08:00","updated_at":"2025-11-21T23:16:27.781976-08:00","dependencies":[{"issue_id":"bd-zwtq","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:09.597617-08:00","created_by":"daemon"}]} -{"id":"bd-pbh.20","title":"Update git hooks","description":"Install the updated hooks:\n```bash\nbd hooks install\n```\n\nVerify hook version:\n```bash\ngrep 'bd-hooks-version' .git/hooks/pre-commit\n```\n\n\n```verify\ngrep -q 'bd-hooks-version: 0.30.4' .git/hooks/pre-commit 2\u003e/dev/null || echo 'Hooks may not be installed - verify manually'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.13198-08:00","updated_at":"2025-12-17T21:46:46.381519-08:00","closed_at":"2025-12-17T21:46:46.381519-08:00","dependencies":[{"issue_id":"bd-pbh.20","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.132306-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.20","depends_on_id":"bd-pbh.17","type":"blocks","created_at":"2025-12-17T21:19:11.352288-08:00","created_by":"daemon"}]} -{"id":"bd-pbh.18","title":"Restart beads daemon","description":"Kill any running daemons so they pick up the new version:\n```bash\nbd daemons killall\n```\n\nStart fresh daemon:\n```bash\nbd list # triggers daemon start\n```\n\nVerify daemon version:\n```bash\nbd version --daemon\n```\n\n\n```verify\nbd version --daemon 2\u003e\u00261 | grep -q '0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.11636-08:00","updated_at":"2025-12-17T21:46:46.364842-08:00","closed_at":"2025-12-17T21:46:46.364842-08:00","dependencies":[{"issue_id":"bd-pbh.18","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.116706-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.18","depends_on_id":"bd-pbh.17","type":"blocks","created_at":"2025-12-17T21:19:11.330411-08:00","created_by":"daemon"}]} -{"id":"bd-kwro.8","title":"Hooks System","description":"Implement hook system for extensibility.\n\nHook directory: .beads/hooks/\nHook files (executable scripts):\n- on_create - runs after bd create\n- on_update - runs after bd update \n- on_close - runs after bd close\n- on_message - runs after bd mail send\n\nHook invocation:\n- Pass issue ID as first argument\n- Pass event type as second argument\n- Pass JSON issue data on stdin\n- Run asynchronously (dont block command)\n\nExample hook (GGT notification):\n #!/bin/bash\n gt notify --event=$2 --issue=$1\n\nThis allows GGT to register notification handlers without Beads knowing about GGT.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:02:23.086393-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-uqfn","title":"Work on beads-wkt: Output control parameters for MCP tool...","description":"Work on beads-wkt: Output control parameters for MCP tools (GH#622). Add brief, fields, max_description_length params to ready/list/show. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:57:10.675535-08:00","updated_at":"2025-12-20T00:26:12.606293-08:00","closed_at":"2025-12-19T23:28:25.362931-08:00"} -{"id":"bd-o55a","title":"GH#509: bd doesn't find .beads when running from nested worktrees","description":"When worktrees are nested under main repo (.worktrees/feature/), bd stops at worktree git root instead of continuing to find .beads in parent. See GitHub issue #509 for detailed fix suggestion.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:20.281591-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-pbh.8","title":"Update npm-package/package.json to 0.30.4","description":"Update version field in npm-package/package.json:\n```json\n\"version\": \"0.30.4\"\n```\n\n\n```verify\njq -e '.version == \"0.30.4\"' npm-package/package.json\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.014905-08:00","updated_at":"2025-12-17T21:46:46.268821-08:00","closed_at":"2025-12-17T21:46:46.268821-08:00","dependencies":[{"issue_id":"bd-pbh.8","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.01529-08:00","created_by":"daemon"}]} -{"id":"bd-vs9","title":"Fix unparam unused parameter in cmd/bd/doctor.go:541","description":"Linting issue: checkHooksQuick - path is unused (unparam) at cmd/bd/doctor.go:541:22. Error: func checkHooksQuick(path string) string {","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:17.02177046-07:00","updated_at":"2025-12-17T23:13:40.535743-08:00","closed_at":"2025-12-17T16:46:11.028332-08:00"} -{"id":"bd-dyy","title":"Review PR #513: fix hooks install docs","description":"Review and merge PR #513 from aspiers. This PR fixes incorrect docs for how to install git hooks - updates README to use bd hooks install instead of removed install.sh. Simple 1-line change. URL: https://github.com/anthropics/beads/pull/513","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:15:14.838772+11:00","updated_at":"2025-12-13T07:07:19.718544-08:00","closed_at":"2025-12-13T07:07:19.718544-08:00"} -{"id":"bd-qqc","title":"Release v{{version}}","description":"Version bump workflow for beads release {{version}}.\n\n## Variables\n- `{{version}}` - The new version number (e.g., 0.31.0)\n- `{{date}}` - Release date (YYYY-MM-DD format)\n\n## Workflow Steps\n1. Kill running daemons\n2. Run tests and linting\n3. Bump version in all files (10 files total)\n4. Update cmd/bd/info.go with release notes\n5. Commit and push version bump\n6. Create and push git tag\n7. Update Homebrew formula\n8. Upgrade local Homebrew installation\n9. Verify installation\n\n## Files Updated by bump-version.sh\n- cmd/bd/version.go\n- .claude-plugin/plugin.json\n- .claude-plugin/marketplace.json\n- integrations/beads-mcp/pyproject.toml\n- integrations/beads-mcp/src/beads_mcp/__init__.py\n- README.md\n- npm-package/package.json\n- cmd/bd/templates/hooks/* (4 files)\n- CHANGELOG.md\n\n## Manual Step Required\n- cmd/bd/info.go - Add versionChanges entry with release notes","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-18T12:59:00.610371-08:00","updated_at":"2025-12-20T01:18:46.71424-08:00","closed_at":"2025-12-20T01:18:46.71424-08:00"} -{"id":"bd-lxzx","title":"Add close_reason to JSONL export format documentation","description":"PR #551 now persists close_reason to the database, but there's a question about whether this field should be exported to JSONL format.\n\n## Current State\n- close_reason is stored in issues.close_reason column\n- close_reason is also stored in events table (audit trail)\n- The JSONL export format may or may not include close_reason\n\n## Questions\n1. Should close_reason be exported to JSONL format?\n2. If yes, where should it go (root level or nested in events)?\n3. Should there be any special handling to avoid duplication?\n4. How should close_reason be handled during JSONL import?\n\n## Why This Matters\n- JSONL is the git-friendly sync format\n- Other beads instances import from JSONL\n- close_reason is meaningful data that should be preserved across clones\n\n## Suggested Action\n- Check if close_reason is currently exported in JSONL\n- If not, add it to the export schema\n- Document the field in JSONL format spec\n- Add tests for round-trip (export -\u003e import -\u003e verify close_reason)","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:17.414916-08:00","updated_at":"2025-12-14T14:25:17.414916-08:00","dependencies":[{"issue_id":"bd-lxzx","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:17.416131-08:00","created_by":"stevey"}]} -{"id":"bd-by0d","title":"Work on beads-ldv: Fix bd graph crashes with nil pointer ...","description":"Work on beads-ldv: Fix bd graph crashes with nil pointer dereference (GH#657). Fix nil pointer in computeDependencyCounts at graph.go:428. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:27.829359-08:00","updated_at":"2025-12-20T00:26:12.607018-08:00","closed_at":"2025-12-19T23:20:49.038441-08:00"} -{"id":"bd-qioh","title":"Standardize error handling: replace direct fmt.Fprintf+os.Exit with FatalError","description":"Code health review found inconsistent error handling patterns:\n\nPattern A (preferred): FatalError() from errors.go:21-24\nPattern B (inconsistent): Direct fmt.Fprintf(os.Stderr) + os.Exit(1)\n\nAffected files:\n- delete.go:35-49 uses direct pattern\n- create.go:213 ignores error silently\n- Various other commands\n\nFix: Standardize on FatalError() wrapper for consistent error messages and testability.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-16T18:17:19.309394-08:00","updated_at":"2025-12-16T18:17:19.309394-08:00","dependencies":[{"issue_id":"bd-qioh","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.953559-08:00","created_by":"daemon"}]} -{"id":"bd-ncwo","title":"Ghost resurrection: remote status:closed wins during git merge","description":"During bd sync, the 3-way git merge sometimes keeps remote's status:closed instead of local's status:tombstone. This causes ghost issues to resurrect even when tombstones exist.\n\nRoot cause: Git 3-way merge doesn't understand tombstone semantics. If base had closed, local changed to tombstone, and remote has closed, git might keep remote's version.\n\nThe early tombstone check in importer.go only prevents CREATION when tombstones exist in DB. But if applyDeletionsFromMerge hard-deletes the tombstones before import runs (because they're not in the merged result), the check doesn't help.\n\nPotential fixes:\n1. Make tombstones 'win' in the beads merge driver (internal/merge/merge.go)\n2. Don't hard-delete tombstones in applyDeletionsFromMerge if they're in the DB\n3. Export tombstones to a separate file that's not subject to merge\n\nGhost issues: bd-cb64c226.*, bd-cbed9619.*","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T22:01:03.56423-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-fx7v","title":"Improve test coverage for cmd/bd/doctor/fix (23.9% ā†’ 50%)","description":"The doctor/fix package has only 23.9% test coverage. The doctor fix functionality is important for troubleshooting.\n\nCurrent coverage: 23.9%\nTarget coverage: 50%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:05.67127-08:00","updated_at":"2025-12-13T21:01:20.839298-08:00"} -{"id":"bd-qqc.6","title":"Create git tag v{{version}}","description":"Create the release tag:\n\n```bash\ngit tag v{{version}}\n```\n\nVerify: `git tag | grep {{version}}`","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T13:00:15.495086-08:00","updated_at":"2025-12-18T23:34:18.632308-08:00","closed_at":"2025-12-18T22:41:41.874099-08:00","dependencies":[{"issue_id":"bd-qqc.6","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T13:00:15.496036-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.6","depends_on_id":"bd-qqc.5","type":"blocks","created_at":"2025-12-18T13:01:07.478315-08:00","created_by":"stevey"}]} -{"id":"bd-au0","title":"Command Set Standardization \u0026 Flag Consistency","description":"Comprehensive improvements to bd command set based on 2025 audit findings.\n\n## Background\nSee docs/command-audit-2025.md for detailed analysis.\n\n## Goals\n1. Standardize flag naming and behavior across all commands\n2. Add missing flags for feature parity\n3. Fix naming confusion\n4. Improve consistency in JSON output\n\n## Success Criteria\n- All mutating commands support --dry-run (no --preview variants)\n- bd update supports label operations\n- bd search has filter parity with bd list\n- Priority flags accept both int and P0-P4 format everywhere\n- JSON output is consistent across all commands","status":"open","priority":2,"issue_type":"epic","created_at":"2025-11-21T21:05:55.672749-05:00","updated_at":"2025-11-21T21:05:55.672749-05:00"} -{"id":"bd-4lm3","title":"Correction: Pinned field already in v0.31.0","description":"Quick correction - the Pinned field is already in the current bd v0.31.0:\n\n```go\n// In beads internal/types/types.go\nPinned bool `json:\"pinned,omitempty\"`\n```\n\nSo you just need to:\n1. Add `Pinned bool `json:\"pinned,omitempty\"`` to BeadsMessage in types.go\n2. Sort pinned messages first in listBeads() after fetching\n\nNo migration needed - the field is already there.\n\n-- Mayor","status":"open","priority":2,"issue_type":"message","created_at":"2025-12-20T17:52:27.321458-08:00","updated_at":"2025-12-20T17:52:27.321458-08:00"} -{"id":"bd-r6a","title":"Redesign workflow system: templates as native Beads","description":"## Problem\n\nThe current workflow system (YAML templates in cmd/bd/templates/workflows/) is architecturally flawed:\n\n1. **Out-of-band data plane** - YAML files are a parallel system outside Beads itself\n2. **Heavyweight DSL** - YAML is gross; even TOML would have been better, but neither is ideal\n3. **Not graph-native** - Beads IS already a dependency graph with priorities, so why reinvent it?\n4. **Can't use bd commands on templates** - They're opaque YAML, not viewable/editable Beads\n\n## The Right Design\n\n**Templates should be Beads themselves.**\n\nA \"workflow template\" should be:\n- An epic marked as a template (via label, type, or prefix like `tpl-`)\n- Child issues with dependencies between them (using normal bd dep)\n- Titles and descriptions containing `{{variable}}` placeholders\n- Normal priorities that control serialization order\n\n\"Instantiation\" becomes:\n1. Clone the template subgraph (epic + children + dependencies)\n2. Substitute variables in titles/descriptions\n3. Generate new IDs for all cloned issues\n4. Return the new epic ID\n\n## Benefits\n\n- **No YAML** - Templates are just Beads\n- **Use existing tools** - `bd show`, `bd edit`, `bd dep` work on templates\n- **Graph-native** - Dependencies are real Beads dependencies\n- **Simpler codebase** - Remove all the YAML parsing/workflow code\n- **Composable** - Templates can reference other templates\n\n## Tasks\n\n1. Delete the YAML workflow system code (revert recent push + remove existing workflow code)\n2. Design template marking convention (label? type? id prefix?)\n3. Implement `bd template create` or `bd clone --as-template`\n4. Implement `bd template instantiate \u003ctemplate-id\u003e --var key=value`\n5. Migrate version-bump workflow to native Beads template\n6. Update documentation","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-17T22:41:57.359643-08:00","updated_at":"2025-12-18T17:42:26.000769-08:00","closed_at":"2025-12-18T13:47:04.632525-08:00"} -{"id":"bd-4ec8","title":"Widespread double JSON encoding bug in daemon mode RPC calls","description":"Multiple CLI commands had the same double JSON encoding bug found in bd-1048. All commands that called ResolveID via RPC used string(resp.Data) instead of properly unmarshaling the JSON response. This caused IDs to retain JSON quotes (\"bd-1048\" instead of bd-1048), which then got double-encoded when passed to subsequent RPC calls.\n\nAffected commands:\n- bd show (3 instances)\n- bd dep add/remove/tree (5 instances)\n- bd label add/remove/list (3 instances)\n- bd reopen (1 instance)\n\nRoot cause: resp.Data is json.RawMessage (already JSON-encoded), so string() conversion preserves quotes.\n\nFix: Replace all string(resp.Data) with json.Unmarshal(resp.Data, \u0026id) for proper deserialization.\n\nAll commands now tested and working correctly with daemon mode.","status":"closed","issue_type":"bug","created_at":"2025-11-02T22:33:01.632691-08:00","updated_at":"2025-12-17T23:13:40.533631-08:00","closed_at":"2025-12-17T16:26:05.851197-08:00"} -{"id":"bd-8pyn","title":"Version Bump: 0.30.7","description":"Release checklist for version 0.30.7. This molecule ensures all release steps are completed properly.","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-19T22:56:48.648694-08:00","updated_at":"2025-12-20T00:25:59.529183-08:00","closed_at":"2025-12-20T00:25:59.529183-08:00"} -{"id":"bd-589x","title":"HANDOFF: Version 0.30.7 release in progress","description":"## Context\nDoing a 0.30.7 patch release with bug fixes.\n\n## What's done\n- Fixed #657: bd graph nil pointer crash (graph.go:102)\n- Fixed #652: Windows npm installer file lock (postinstall.js)\n- Updated CHANGELOG.md and info.go\n- Pushed to main, CI running (run 20390861825)\n- Created version-bump molecule template (bd-6s61) and instantiated for 0.30.7 (bd-8pyn)\n\n## In progress\nMolecule bd-8pyn has 3 remaining tasks:\n - bd-dxo7: Wait for CI to pass\n - bd-7l70: Verify release artifacts \n - bd-5c91: Update local installation\n\n## Check CI\n gh run list --repo steveyegge/beads --limit 1\n gh run view 20390861825 --repo steveyegge/beads\n\n## New feature filed\nbd-n777: Timer beads for scheduled agent callbacks\nDesign for Deacon-managed timers that can interrupt agents via tmux\n\n## Resume commands\n bd --no-daemon show bd-8pyn\n gh run list --repo steveyegge/beads --limit 1","status":"closed","priority":2,"issue_type":"message","created_at":"2025-12-19T23:06:14.902334-08:00","updated_at":"2025-12-20T00:25:59.596546-08:00","closed_at":"2025-12-20T00:25:59.596546-08:00"} -{"id":"bd-ork0","title":"Add comments to 30+ silently ignored errors or fix them","description":"Code health review found 30+ instances of error suppression using blank identifier without explanation:\n\nGood examples (with comments):\n- merge.go: _ = gitRmCmd.Run() // Ignore errors\n- daemon_watcher.go: _ = watcher.Add(...) // Ignore error\n\nBad examples (no context):\n- create.go:213: dbPrefix, _ = store.GetConfig(ctx, \"issue_prefix\")\n- daemon_sync_branch.go: _ = daemonClient.Close()\n- migrate_hash_ids.go, version_tracking.go: _ = store.Close()\n\nFix: Add comments explaining WHY errors are ignored, or handle them properly.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:25.899372-08:00","updated_at":"2025-12-16T18:17:25.899372-08:00","dependencies":[{"issue_id":"bd-ork0","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.275843-08:00","created_by":"daemon"}]} -{"id":"bd-1tw","title":"Fix G104 errors unhandled in internal/storage/sqlite/queries.go:1186","description":"Linting issue: G104: Errors unhandled (gosec) at internal/storage/sqlite/queries.go:1186:2. Error: rows.Close()","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:13.051671889-07:00","updated_at":"2025-12-17T23:13:40.53486-08:00","closed_at":"2025-12-17T16:46:11.0289-08:00"} -{"id":"bd-zclk","title":"Commit and push release","description":"git add -A \u0026\u0026 git commit \u0026\u0026 git push to trigger CI","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.6489-08:00","updated_at":"2025-12-19T22:57:58.978614-08:00","closed_at":"2025-12-19T22:57:58.978614-08:00","dependencies":[{"issue_id":"bd-zclk","depends_on_id":"bd-hzvz","type":"blocks","created_at":"2025-12-19T22:56:48.650488-08:00","created_by":"stevey"},{"issue_id":"bd-zclk","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.650043-08:00","created_by":"stevey"}]} -{"id":"bd-aec5439f","title":"Update LINTING.md with current baseline","description":"After cleanup, document the remaining acceptable baseline in LINTING.md so we can track regression.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-27T18:53:10.38679-07:00","updated_at":"2025-12-17T22:58:34.564854-08:00","closed_at":"2025-12-17T22:58:34.564854-08:00"} -{"id":"bd-gjla","title":"Test Thread","description":"Initial message for threading test","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:19:51.704324-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-gjla","depends_on_id":"bd-f5cc","type":"duplicates","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} -{"id":"bd-4qfb","title":"Improve bd doctor output formatting for better readability","description":"The current bd doctor output is a wall of text that's hard to process. Consider improvements like:\n- Grouping related checks into collapsible sections\n- Using color/bold for section headers\n- Showing only failures/warnings by default with --verbose for full output\n- Better visual hierarchy between major sections\n- Summary line at top (e.g., '24 checks passed, 0 warnings, 0 errors')","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T09:29:27.557578+11:00","updated_at":"2025-12-13T09:29:27.557578+11:00"} -{"id":"bd-qkw9","title":"Run bump-version.sh {{version}}","description":"Run ./scripts/bump-version.sh {{version}} to update version in all files","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:55:58.841424-08:00","updated_at":"2025-12-20T01:18:48.99813-08:00","closed_at":"2025-12-20T01:18:48.99813-08:00","dependencies":[{"issue_id":"bd-qkw9","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:14.786027-08:00","created_by":"daemon"}]} -{"id":"bd-aydr","title":"Add bd reset command for clean slate restart","description":"Implement a `bd reset` command to reset beads to a clean starting state.\n\n## Context\nGitHub issue #479 - users sometimes get beads into an invalid state after updates, and there's no clean way to start fresh. The git backup/restore mechanism that protects against accidental deletion also makes it hard to intentionally reset.\n\n## Design\n\n### Command Interface\n```\nbd reset [--hard] [--force] [--backup] [--dry-run] [--no-init]\n```\n\n| Flag | Effect |\n|------|--------|\n| `--hard` | Also remove from git index and commit |\n| `--force` | Skip confirmation prompt |\n| `--backup` | Create `.beads-backup-{timestamp}/` first |\n| `--dry-run` | Preview what would happen |\n| `--no-init` | Don't re-initialize after clearing |\n\n### Reset Levels\n1. **Soft Reset (default)** - Kill daemons, clear .beads/, re-init. Git history unchanged.\n2. **Hard Reset (`--hard`)** - Also git rm and commit the removal, then commit fresh state.\n\n### Implementation Flow\n1. Validate .beads/ exists\n2. If not --force: show impact summary, prompt confirmation\n3. If --backup: copy .beads/ to .beads-backup-{timestamp}/\n4. Kill daemons\n5. If --hard: git rm + commit\n6. rm -rf .beads/*\n7. If not --no-init: bd init (and git add+commit if --hard)\n8. Print summary\n\n### Safety Mechanisms\n- Confirmation prompt (skip with --force)\n- Impact summary (issue/tombstone counts)\n- Backup option\n- Dry-run preview\n- Git dirty check warning\n\n### Code Structure\n- `cmd/bd/reset.go` - CLI command\n- `internal/reset/` - Core logic package","status":"closed","priority":2,"issue_type":"epic","created_at":"2025-12-13T08:44:01.38379+11:00","updated_at":"2025-12-13T06:24:29.561294-08:00","closed_at":"2025-12-13T10:18:19.965287+11:00"} +{"id":"bd-0vg","title":"Pinned issues: persistent context markers","description":"Add ability to pin issues so they remain visible and are excluded from work-finding commands. Pinned issues serve as persistent context markers (handoffs, architectural notes, recovery instructions) that should not be claimed as work items.\n\nUse Cases:\n1. Handoff messages - Pin session handoffs so new agents always see them\n2. Architecture decisions - Pin ADRs or design notes for reference \n3. Recovery context - Pin amnesia-cure notes that help agents orient\n\nCore commands: bd pin, bd unpin, bd list --pinned/--no-pinned","status":"open","priority":1,"issue_type":"epic","created_at":"2025-12-18T23:33:10.911092-08:00","updated_at":"2025-12-18T23:33:17.882415-08:00"} {"id":"bd-0w5","title":"Fix update-hooks verification in version-bump.yaml","description":"The update-hooks task verification command at version-bump.yaml:358 always succeeds due to '|| echo ...' fallback. Remove the fallback so verification actually fails when hooks aren't installed.","status":"closed","priority":3,"issue_type":"bug","created_at":"2025-12-17T22:23:06.55467-08:00","updated_at":"2025-12-17T22:34:07.290409-08:00","closed_at":"2025-12-17T22:34:07.290409-08:00"} -{"id":"bd-bgm","title":"Fix unparam unused parameter in cmd/bd/doctor.go:1879","description":"Linting issue: checkGitHooks - path is unused (unparam) at cmd/bd/doctor.go:1879:20. Error: func checkGitHooks(path string) doctorCheck {","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:25.270293252-07:00","updated_at":"2025-12-17T23:13:40.532991-08:00","closed_at":"2025-12-17T16:46:11.026693-08:00"} -{"id":"bd-pbh.9","title":"Update hook templates to 0.30.4","description":"Update bd-hooks-version comment in all 4 hook templates:\n- cmd/bd/templates/hooks/pre-commit\n- cmd/bd/templates/hooks/post-merge\n- cmd/bd/templates/hooks/pre-push\n- cmd/bd/templates/hooks/post-checkout\n\nEach should have:\n```bash\n# bd-hooks-version: 0.30.4\n```\n\n\n```verify\ngrep -l 'bd-hooks-version: 0.30.4' cmd/bd/templates/hooks/* | wc -l | grep -q '4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.0248-08:00","updated_at":"2025-12-17T21:46:46.27561-08:00","closed_at":"2025-12-17T21:46:46.27561-08:00","dependencies":[{"issue_id":"bd-pbh.9","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.025124-08:00","created_by":"daemon"}]} -{"id":"bd-4y4g","title":"Bump version in all files","description":"Run ./scripts/bump-version.sh {{version}} to update 10 version files. Then run with --commit after info.go is updated.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:01.859728-08:00","updated_at":"2025-12-18T22:46:24.537336-08:00","closed_at":"2025-12-18T22:46:24.537336-08:00","dependencies":[{"issue_id":"bd-4y4g","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.623724-08:00","created_by":"daemon"},{"issue_id":"bd-4y4g","depends_on_id":"bd-8v2","type":"blocks","created_at":"2025-12-18T22:43:20.823329-08:00","created_by":"daemon"}]} -{"id":"bd-qqc.10","title":"Upgrade local Homebrew installation","description":"Upgrade bd via Homebrew:\n\n```bash\nbrew update\nbrew upgrade bd\n/opt/homebrew/bin/bd version # Verify shows {{version}}\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:37.60241-08:00","updated_at":"2025-12-18T23:07:55.686598-08:00","closed_at":"2025-12-18T22:52:00.331429-08:00","dependencies":[{"issue_id":"bd-qqc.10","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:37.603893-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.10","depends_on_id":"bd-qqc.9","type":"blocks","created_at":"2025-12-18T22:43:21.458817-08:00","created_by":"daemon"}]} -{"id":"bd-g9eu","title":"Investigate TestRoutingIntegration failure","description":"TestRoutingIntegration/maintainer_with_SSH_remote failed during pre-commit check with \"expected role maintainer, got contributor\".\nThis occurred while running `go test -short ./...` on darwin/arm64.\nThe failure appears unrelated to storage/sqlite changes.\nNeed to investigate if this is a flaky test or environmental issue.","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-20T15:55:19.337094-08:00","updated_at":"2025-11-20T15:55:19.337094-08:00"} +{"id":"bd-0zp7","title":"Add missing hook calls in mail reply and ack","description":"The mail commands are missing hook calls:\n\n1. runMailReply (mail.go:525-672) creates a message but doesn't call hookRunner.Run(hooks.EventMessage, ...) after creating the reply in direct mode (around line 640)\n\n2. runMailAck (mail.go:432-523) closes messages but doesn't call hookRunner.Run(hooks.EventClose, ...) after closing each message (around line 487 for daemon mode, 493 for direct mode)\n\nThis means GGT hooks won't fire for replies or message acknowledgments.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T20:52:53.069412-08:00","updated_at":"2025-12-17T23:13:40.532054-08:00","closed_at":"2025-12-17T17:22:59.368024-08:00"} +{"id":"bd-14ie","title":"Work on beads-2vn: Add simple built-in beads viewer (GH#6...","description":"Work on beads-2vn: Add simple built-in beads viewer (GH#654). Add bd list --pretty with --watch flag, tree view with priority/status symbols. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:47.305831-08:00","updated_at":"2025-12-20T00:26:12.605897-08:00","closed_at":"2025-12-19T23:23:13.928323-08:00"} +{"id":"bd-1slh","title":"Investigate charmbracelet-based TUI for beads","description":"Now that we've merged the create-form command (PR #603) which uses charmbracelet/huh, investigate whether beads should have a more comprehensive TUI.\n\nConsiderations:\n- Should this be in core or a separate binary (bd-tui)?\n- What functionality would benefit from a TUI? (list view, issue details, search, bulk operations)\n- Plugin/extension architecture vs build tags vs separate binary\n- Dependency cost vs user experience tradeoff\n- Target audience: humans who want interactive workflows vs CLI/scripting users\n\nRelated: PR #603 added charmbracelet/huh dependency for create-form command.","status":"open","priority":3,"issue_type":"feature","created_at":"2025-12-17T14:20:51.503563-08:00","updated_at":"2025-12-17T14:20:51.503563-08:00"} +{"id":"bd-1tw","title":"Fix G104 errors unhandled in internal/storage/sqlite/queries.go:1186","description":"Linting issue: G104: Errors unhandled (gosec) at internal/storage/sqlite/queries.go:1186:2. Error: rows.Close()","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:13.051671889-07:00","updated_at":"2025-12-17T23:13:40.53486-08:00","closed_at":"2025-12-17T16:46:11.0289-08:00"} {"id":"bd-20j","title":"sync branch not match config","description":"./bd sync\nā†’ Exporting pending changes to JSONL...\nā†’ No changes to commit\nā†’ Pulling from sync branch 'gh-386'...\nError pulling from sync branch: failed to create worktree: failed to create worktree parent directory: mkdir /var/home/matt/dev/beads/worktree-db-fail/.git: not a directory\nmatt@blufin-framation ~/d/b/worktree-db-fail (worktree-db-fail) [1]\u003e bd config list\n\nConfiguration:\n auto_compact_enabled = false\n compact_batch_size = 50\n compact_model = claude-3-5-haiku-20241022\n compact_parallel_workers = 5\n compact_tier1_days = 30\n compact_tier1_dep_levels = 2\n compact_tier2_commits = 100\n compact_tier2_days = 90\n compact_tier2_dep_levels = 5\n compaction_enabled = false\n issue_prefix = worktree-db-fail\n sync.branch = worktree-db-fail","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-08T06:49:04.449094018-07:00","updated_at":"2025-12-08T06:49:04.449094018-07:00"} -{"id":"bd-cbed9619.3","title":"Implement global N-way collision resolution algorithm","description":"**Summary:** Replaced pairwise collision resolution with a global N-way algorithm that deterministically resolves issue ID conflicts across multiple clones. The new approach groups collisions, deduplicates by content hash, and assigns sequential IDs to ensure consistent synchronization.\n\n**Key Decisions:**\n- Use content hash for global, stable sorting\n- Group collisions by base ID\n- Assign sequential IDs based on sorted unique versions\n- Eliminate order-dependent remapping logic\n\n**Resolution:** Implemented ResolveNWayCollisions function that guarantees deterministic issue ID assignment across multiple synchronization scenarios, solving the core challenge of maintaining consistency in distributed systems with potential conflicts.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:37:42.85616-07:00","updated_at":"2025-12-17T23:18:29.112335-08:00","dependencies":[{"issue_id":"bd-cbed9619.3","depends_on_id":"bd-cbed9619.5","type":"blocks","created_at":"2025-10-28T18:39:28.30886-07:00","created_by":"daemon"},{"issue_id":"bd-cbed9619.3","depends_on_id":"bd-cbed9619.4","type":"blocks","created_at":"2025-10-28T18:39:28.336312-07:00","created_by":"daemon"}],"deleted_at":"2025-12-17T23:18:29.112335-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-28db","title":"Add 'bd status' command for issue database overview","description":"Implement a bd status command that provides a quick snapshot of the issue database state, similar to how git status shows working tree state.\n\nExpected output: Show summary including counts by state (open, in-progress, blocked, closed), recent activity (last 7 days), and quick overview without needing multiple queries.\n\nExample output showing issue counts, recent activity stats, and pointer to bd list for details.\n\nProposed options: --all (show all issues), --assigned (show issues assigned to current user), --json (JSON format output)\n\nUse cases: Quick project health check, onboarding for new contributors, integration with shell prompts or CI/CD, daily standup reference","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-02T17:25:59.203549-08:00","updated_at":"2025-11-02T17:25:59.203549-08:00"} +{"id":"bd-2ep8","title":"Update CHANGELOG.md with release notes","description":"Add meaningful release notes to CHANGELOG.md describing what changed in 0.30.7","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649053-08:00","updated_at":"2025-12-19T22:57:31.69559-08:00","closed_at":"2025-12-19T22:57:31.69559-08:00","close_reason":"Updated CHANGELOG.md with release notes","dependencies":[{"issue_id":"bd-2ep8","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.650816-08:00","created_by":"stevey"},{"issue_id":"bd-2ep8","depends_on_id":"bd-rupw","type":"blocks","created_at":"2025-12-19T22:56:48.651136-08:00","created_by":"stevey"}]} +{"id":"bd-2oo","title":"Edge Schema Consolidation: Unify all edges in dependencies table","description":"Consolidate all edge types into the dependency table per decision 004.\n\n## Changes\n- Add metadata column to dependencies table\n- Add thread_id column for conversation grouping\n- Remove redundant Issue fields: replies_to, relates_to, duplicate_of, superseded_by\n- Update all code to use dependencies API\n- Migration script for existing data\n- JSONL format change (breaking)\n\nReference: ~/gt/hop/decisions/004-edge-schema-consolidation.md","status":"closed","issue_type":"epic","created_at":"2025-12-18T02:01:48.785558-08:00","updated_at":"2025-12-18T02:49:10.61237-08:00","closed_at":"2025-12-18T02:49:10.61237-08:00","close_reason":"Phase 4 complete: all edge fields removed, dependencies API used exclusively"} +{"id":"bd-2oo.1","title":"Add metadata and thread_id columns to dependencies table","description":"Schema changes:\n- ALTER TABLE dependencies ADD COLUMN metadata TEXT DEFAULT '{}'\n- ALTER TABLE dependencies ADD COLUMN thread_id TEXT DEFAULT ''\n- CREATE INDEX idx_dependencies_thread ON dependencies(thread_id) WHERE thread_id != ''","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:00.468223-08:00","updated_at":"2025-12-18T02:49:10.575133-08:00","closed_at":"2025-12-18T02:49:10.575133-08:00","close_reason":"Phase 4 complete: all edge fields removed, dependencies API used exclusively","dependencies":[{"issue_id":"bd-2oo.1","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:00.470012-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-2oo.2","title":"Remove redundant edge fields from Issue struct","description":"Remove from Issue struct:\n- RepliesTo -\u003e dependency with type replies-to\n- RelatesTo -\u003e dependencies with type relates-to \n- DuplicateOf -\u003e dependency with type duplicates\n- SupersededBy -\u003e dependency with type supersedes\n\nKeep: Sender, Ephemeral (these are attributes, not relationships)","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:00.891206-08:00","updated_at":"2025-12-18T02:49:10.584381-08:00","closed_at":"2025-12-18T02:49:10.584381-08:00","close_reason":"Phase 4 complete: all edge fields removed, dependencies API used exclusively","dependencies":[{"issue_id":"bd-2oo.2","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:00.891655-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-2oo.3","title":"Update all code to use dependencies API for edges","description":"Find and update all code that reads/writes:\n- replies_to field -\u003e use dependency API\n- relates_to field -\u003e use dependency API\n- duplicate_of field -\u003e use dependency API\n- superseded_by field -\u003e use dependency API\n\nCommands affected: bd mail, bd relate, bd duplicate, bd supersede, bd show, etc.","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:01.317006-08:00","updated_at":"2025-12-18T02:49:10.59233-08:00","closed_at":"2025-12-18T02:49:10.59233-08:00","close_reason":"Phase 4 complete: all edge fields removed, dependencies API used exclusively","dependencies":[{"issue_id":"bd-2oo.3","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:01.31856-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-2oo.4","title":"Create migration script for edge field to dependency conversion","description":"Migration must:\n1. Read existing JSONL with old fields\n2. Convert field values to dependency records\n3. Write updated JSONL without old fields\n4. Handle edge cases (missing refs, duplicates)\n\nRun via: bd migrate or automatic on bd prime","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:01.760277-08:00","updated_at":"2025-12-18T02:49:10.602446-08:00","closed_at":"2025-12-18T02:49:10.602446-08:00","close_reason":"Phase 4 complete: all edge fields removed, dependencies API used exclusively","dependencies":[{"issue_id":"bd-2oo.4","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:01.760694-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-2q6d","title":"Beads commands operate on stale database without warning","description":"All beads read operations should validate database is in sync with JSONL before proceeding.\n\n**Current Behavior:**\n- Commands can query/read from stale database\n- Only mutation operations (like 'bd sync') check if JSONL is newer\n- User gets incorrect results without realizing database is out of sync\n\n**Expected Behavior:**\n- All beads commands should have pre-flight check for database freshness\n- If JSONL is newer than database, refuse to operate with error: \"Database out of sync. Run 'bd import' first.\"\n- Same safety check that exists for 'bd sync' should apply to ALL operations\n\n**Impact:**\n- Users make decisions based on incomplete/outdated data\n- Silent failures lead to confusion (e.g., thinking issues don't exist when they do)\n- Similar to running git commands on stale repo without being warned to pull\n\n**Example:**\n- Searched for bd-g9eu issue file: not found\n- Issue exists in .beads/issues.jsonl (in git)\n- Database was stale, but no warning was given\n- Led to incorrect conclusion that issue was already closed/deleted","notes":"## Implementation Complete\n\n**Phase 1: Created staleness check (cmd/bd/staleness.go)**\n- ensureDatabaseFresh() function checks JSONL mtime vs last_import_time\n- Returns error with helpful message when database is stale\n- Auto-skips in daemon mode (daemon has auto-import)\n\n**Phase 2: Added to all read commands**\n- list, show, ready, status, stale, info, duplicates, validate\n- Check runs before database queries in direct mode\n- Daemon mode already protected via checkAndAutoImportIfStale()\n\n**Phase 3: Code Review Findings**\nSee follow-up issues:\n- bd-XXXX: Add warning when staleness check errors\n- bd-YYYY: Improve CheckStaleness error handling\n- bd-ZZZZ: Refactor redundant daemon checks (low priority)\n\n**Testing:**\n- Build successful: go build ./cmd/bd\n- Binary works: ./bd --version\n- Ready for manual testing\n\n**Next Steps:**\n1. Test with stale database scenario\n2. Implement review improvements\n3. Close issue when tests pass","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-20T19:33:40.019297-05:00","updated_at":"2025-12-17T23:13:40.535149-08:00","closed_at":"2025-12-17T19:11:12.982639-08:00"} {"id":"bd-2wh","title":"Test pinned for stats","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-18T21:47:09.334108-08:00","updated_at":"2025-12-18T21:47:25.17917-08:00","deleted_at":"2025-12-18T21:47:25.17917-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-b6xo","title":"Remove or fix ClearDirtyIssues() - race condition risk (bd-52)","description":"Code health review found internal/storage/sqlite/dirty.go still exposes old ClearDirtyIssues() method (lines 103-108) which clears ALL dirty issues without checking what was actually exported.\n\nData loss risk: If export fails after some issues written to JSONL but before ClearDirtyIssues called, changes to remaining dirty issues will be lost.\n\nThe safer ClearDirtyIssuesByID() (lines 113-132) exists and clears only exported issues.\n\nFix: Either remove old method or mark it deprecated and ensure no code paths use it.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T18:17:20.534625-08:00","updated_at":"2025-12-17T23:13:40.530703-08:00","closed_at":"2025-12-17T18:59:18.693791-08:00","dependencies":[{"issue_id":"bd-b6xo","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.633738-08:00","created_by":"daemon"}]} -{"id":"bd-au0.6","title":"Add comprehensive filters to bd export","description":"Enhance bd export with filtering options for selective exports.\n\n**Currently only has:**\n- --status\n\n**Add filters:**\n- --label, --label-any\n- --assignee\n- --type\n- --priority, --priority-min, --priority-max\n- --created-after, --created-before\n- --updated-after, --updated-before\n\n**Use case:**\n- Export only open issues: bd export --status open\n- Export high-priority bugs: bd export --type bug --priority-max 1\n- Export recent issues: bd export --created-after 2025-01-01\n\n**Files to modify:**\n- cmd/bd/export.go\n- Reuse filter logic from list.go","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-21T21:07:19.431307-05:00","updated_at":"2025-11-21T21:07:19.431307-05:00","dependencies":[{"issue_id":"bd-au0.6","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:19.432983-05:00","created_by":"daemon"}]} -{"id":"bd-d3e5","title":"Test issue 2","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-14T11:21:13.878680387-07:00","updated_at":"2025-12-14T11:21:13.878680387-07:00","closed_at":"2025-12-14T00:32:13.890274-08:00"} -{"id":"bd-au0.9","title":"Review and document rarely-used commands","description":"Document use cases or consider deprecation for infrequently-used commands.\n\n**Commands to review:**\n1. bd rename-prefix - How often is this used? Document use cases\n2. bd detect-pollution - Consider integrating into bd validate\n3. bd migrate-hash-ids - One-time migration, keep but document as legacy\n\n**For each command:**\n- Document typical use cases\n- Add examples to help text\n- Consider if it should be a subcommand instead\n- Add deprecation warning if appropriate\n\n**Not changing:**\n- duplicates āœ“ (useful for data quality)\n- repair-deps āœ“ (useful for fixing broken refs)\n- restore āœ“ (critical for compacted issues)\n- compact āœ“ (performance feature)\n\n**Deliverable:**\n- Updated help text\n- Documentation in ADVANCED.md\n- Deprecation plan if needed","status":"open","priority":3,"issue_type":"task","created_at":"2025-11-21T21:08:05.588275-05:00","updated_at":"2025-11-21T21:08:05.588275-05:00","dependencies":[{"issue_id":"bd-au0.9","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:08:05.59003-05:00","created_by":"daemon"}]} -{"id":"bd-2oo.3","title":"Update all code to use dependencies API for edges","description":"Find and update all code that reads/writes:\n- replies_to field -\u003e use dependency API\n- relates_to field -\u003e use dependency API\n- duplicate_of field -\u003e use dependency API\n- superseded_by field -\u003e use dependency API\n\nCommands affected: bd mail, bd relate, bd duplicate, bd supersede, bd show, etc.","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:01.317006-08:00","updated_at":"2025-12-18T02:49:10.59233-08:00","closed_at":"2025-12-18T02:49:10.59233-08:00","dependencies":[{"issue_id":"bd-2oo.3","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:01.31856-08:00","created_by":"daemon"}]} -{"id":"bd-hzvz","title":"Update info.go versionChanges","description":"Add entry to versionChanges in cmd/bd/info.go with agent-actionable changes for 0.30.7","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649359-08:00","updated_at":"2025-12-19T22:57:31.604229-08:00","closed_at":"2025-12-19T22:57:31.604229-08:00","dependencies":[{"issue_id":"bd-hzvz","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.652068-08:00","created_by":"stevey"},{"issue_id":"bd-hzvz","depends_on_id":"bd-2ep8","type":"blocks","created_at":"2025-12-19T22:56:48.652376-08:00","created_by":"stevey"}]} -{"id":"bd-umbf","title":"Design contributor namespace isolation for beads pollution prevention","description":"## Problem\n\nWhen contributors work on beads-the-project using beads-the-tool, their personal work-tracking issues leak into PRs. The .beads/issues.jsonl is intentionally tracked (it's the project's issue database), but contributors' local issues pollute the diff.\n\nThis is a recursion problem unique to self-hosting projects.\n\n## Possible Solutions to Explore\n\n1. **Contributor namespaces** - Each contributor gets a private prefix (e.g., `bd-steve-xxxx`) that's gitignored or filtered\n2. **Separate database** - Contributors use BEADS_DIR pointing elsewhere for personal tracking\n3. **Issue ownership/visibility flags** - Mark issues as \"local-only\" vs \"project\"\n4. **Prefix-based filtering** - Configure which prefixes are committed vs ignored\n\n## Design Considerations\n\n- Should be zero-friction for contributors (no manual setup)\n- Must not break existing workflows\n- Needs to work with sync/collaboration features\n- Consider: what if a \"personal\" issue graduates to \"project\" issue?\n\n## Expansion Needed\n\nThis is a placeholder. Needs detailed design exploration before implementation.","status":"open","priority":2,"issue_type":"feature","created_at":"2025-12-13T18:00:29.638743-08:00","updated_at":"2025-12-13T18:00:41.345673-08:00"} -{"id":"bd-nuh1","title":"GH#403: bd doctor --fix circular error message","description":"bd doctor --fix suggests running bd doctor --fix for deletions manifest issue. Fix to provide actual resolution. See GitHub issue #403.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:16.290018-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-8g8","title":"Fix G304 potential file inclusion in cmd/bd/tips.go:259","description":"Linting issue: G304: Potential file inclusion via variable (gosec) at cmd/bd/tips.go:259:18. Error: if data, err := os.ReadFile(settingsPath); err == nil {","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:34:57.189730843-07:00","updated_at":"2025-12-17T23:13:40.534569-08:00","closed_at":"2025-12-17T16:46:11.029837-08:00"} -{"id":"bd-9usz","title":"Test suite hangs/never finishes","description":"Running 'go test ./... -count=1' hangs indefinitely. The full test suite never completes, making it difficult to verify changes. Need to investigate which tests are hanging and fix or add timeouts.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-16T21:56:27.80191-08:00","updated_at":"2025-12-16T21:56:27.80191-08:00"} -{"id":"bd-crgr","title":"GH#517: Claude sets priority wrong on new install","description":"Claude uses 'medium/high/low' for priority instead of P0-P4. Update bd prime/onboard output to be clearer about priority syntax. See GitHub issue #517.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:34.803084-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-pbh.10","title":"Run check-versions.sh - all must pass","description":"Run the version consistency check:\n```bash\n./scripts/check-versions.sh\n```\n\nAll versions must match 0.30.4.\n\n\n```verify\n./scripts/check-versions.sh\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.047311-08:00","updated_at":"2025-12-17T21:46:46.28316-08:00","closed_at":"2025-12-17T21:46:46.28316-08:00","dependencies":[{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.5","type":"blocks","created_at":"2025-12-17T21:19:11.177869-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.6","type":"blocks","created_at":"2025-12-17T21:19:11.187629-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.7","type":"blocks","created_at":"2025-12-17T21:19:11.199955-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.8","type":"blocks","created_at":"2025-12-17T21:19:11.211479-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.047888-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.1","type":"blocks","created_at":"2025-12-17T21:19:11.159084-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.4","type":"blocks","created_at":"2025-12-17T21:19:11.168248-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.9","type":"blocks","created_at":"2025-12-17T21:19:11.224059-08:00","created_by":"daemon"}]} -{"id":"bd-qqc.13","title":"Upgrade beads-mcp to {{version}}","description":"Upgrade the MCP server via pip:\n\n```bash\npip install --upgrade beads-mcp\npip show beads-mcp | grep Version # Verify {{version}}\n```\n\nNote: Restart Claude Code or MCP session to use new version.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:08:04.318233-08:00","updated_at":"2025-12-18T23:09:05.77824-08:00","closed_at":"2025-12-18T23:09:05.77824-08:00","dependencies":[{"issue_id":"bd-qqc.13","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T23:08:04.318709-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.13","depends_on_id":"bd-qqc.11","type":"blocks","created_at":"2025-12-18T23:08:19.927825-08:00","created_by":"daemon"}]} -{"id":"bd-gxq","title":"Simplify bd onboard to minimal AGENTS.md snippet pointing to bd prime","description":"## Context\nGH#604 raised concerns about bd onboard bloating AGENTS.md with ~100+ lines of static instructions that:\n- Load every session whether beads is being used or not\n- Get stale when bd upgrades\n- Waste tokens\n\n## Solution\nSimplify `bd onboard` to output a minimal snippet (~2 lines) that points to `bd prime`:\n\n```markdown\n## Issue Tracking\nThis project uses beads (`bd`) for issue tracking.\nRun `bd prime` for workflow context, or hooks auto-inject it.\n```\n\n## Rationale\n- `bd prime` is dynamic, concise (~80 lines), and always matches installed bd version\n- Hooks already auto-inject `bd prime` at session start when .beads/ detected\n- AGENTS.md only needs to mention beads exists, not contain full instructions\n\n## Implementation\n1. Update `cmd/bd/onboard.go` to output minimal snippet\n2. Keep `--output` flag for BD_GUIDE.md generation (may still be useful)\n3. Update help text to explain the new approach","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T11:42:38.604891-08:00","updated_at":"2025-12-18T11:47:28.020419-08:00","closed_at":"2025-12-18T11:47:28.020419-08:00"} -{"id":"bd-zc3","title":"Add --pinned and --no-pinned flags to bd list","description":"Add filtering flags to bd list: --pinned shows only pinned issues, --no-pinned excludes pinned issues. Default behavior shows all issues with a pin indicator.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:29.518028-08:00","updated_at":"2025-12-18T23:33:29.518028-08:00","dependencies":[{"issue_id":"bd-zc3","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.256764-08:00","created_by":"daemon"},{"issue_id":"bd-zc3","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.486361-08:00","created_by":"daemon"}]} -{"id":"bd-pbh.21","title":"Final release verification","description":"Verify all release artifacts are accessible:\n\n- [ ] `bd --version` shows 0.30.4\n- [ ] `bd version --daemon` shows 0.30.4\n- [ ] GitHub release exists: https://github.com/steveyegge/beads/releases/tag/v0.30.4\n- [ ] `brew upgrade beads \u0026\u0026 bd --version` shows 0.30.4 (if using Homebrew)\n- [ ] `pip show beads-mcp` shows 0.30.4\n- [ ] npm package available at 0.30.4\n- [ ] `bd info --whats-new` shows 0.30.4 notes\n\nRun final checks:\n```bash\nbd --version\nbd version --daemon\npip show beads-mcp | grep Version\nbd info --whats-new\n```\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.141249-08:00","updated_at":"2025-12-17T21:46:46.390985-08:00","closed_at":"2025-12-17T21:46:46.390985-08:00","dependencies":[{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.18","type":"blocks","created_at":"2025-12-17T21:19:11.364839-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.19","type":"blocks","created_at":"2025-12-17T21:19:11.373656-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.20","type":"blocks","created_at":"2025-12-17T21:19:11.382-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.15","type":"blocks","created_at":"2025-12-17T21:19:11.389733-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.16","type":"blocks","created_at":"2025-12-17T21:19:11.398347-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.141549-08:00","created_by":"daemon"}]} -{"id":"bd-hlsw.3","title":"Auto-recovery mode (bd sync --auto-recover)","description":"Add bd sync --auto-recover flag that: detects problematic sync state, backs up .beads/issues.db with timestamp, rebuilds DB from JSONL atomically, verifies consistency, reports what was fixed. Provides safety valve when sync integrity fails.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-14T10:40:20.599836875-07:00","updated_at":"2025-12-14T10:40:20.599836875-07:00","dependencies":[{"issue_id":"bd-hlsw.3","depends_on_id":"bd-hlsw","type":"parent-child","created_at":"2025-12-14T10:40:20.600435888-07:00","created_by":"daemon"}]} -{"id":"bd-aay","title":"Warn on invalid depends_on references in workflow templates","description":"workflow.go:780-781 silently skips invalid dependency names. Should log a warning when a depends_on reference doesn't match any task ID in the template.","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T22:23:04.325253-08:00","updated_at":"2025-12-17T22:34:07.309495-08:00","closed_at":"2025-12-17T22:34:07.309495-08:00"} -{"id":"bd-aydr.8","title":"Respond to GitHub issue #479 with solution","description":"Once bd reset is implemented and released, respond to GitHub issue #479.\n\n## Response should include\n- Announce the new bd reset command\n- Show basic usage examples\n- Link to any documentation\n- Thank the user for the feedback\n\n## Example response\n```\nThanks for raising this! We've added a `bd reset` command to handle this case.\n\nUsage:\n- `bd reset` - Reset to clean state (prompts for confirmation)\n- `bd reset --backup` - Create backup first\n- `bd reset --hard` - Also clean up git history\n\nThis is available in version X.Y.Z.\n```\n\n## Notes\n- Wait until feature is merged and released\n- Consider if issue should be closed or left for user confirmation","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-13T08:45:00.112351+11:00","updated_at":"2025-12-13T06:24:29.562177-08:00","closed_at":"2025-12-13T10:18:06.646796+11:00","dependencies":[{"issue_id":"bd-aydr.8","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:45:00.112732+11:00","created_by":"daemon"},{"issue_id":"bd-aydr.8","depends_on_id":"bd-aydr.7","type":"blocks","created_at":"2025-12-13T08:45:12.640243+11:00","created_by":"daemon"}]} -{"id":"bd-cb64c226.13","title":"Audit Current Cache Usage","description":"**Summary:** Comprehensive audit of storage cache usage revealed minimal dependency across server components, with most calls following a consistent pattern. Investigation confirmed cache was largely unnecessary in single-repository daemon architecture.\n\n**Key Decisions:** \n- Remove all cache-related environment variables\n- Delete server struct cache management fields\n- Eliminate cache-specific test files\n- Deprecate req.Cwd routing logic\n\n**Resolution:** Cache system will be completely removed, simplifying server storage access and reducing unnecessary complexity with negligible performance impact.","notes":"AUDIT COMPLETE\n\ngetStorageForRequest() callers: 17 production + 11 test\n- server_issues_epics.go: 8 calls\n- server_labels_deps_comments.go: 4 calls \n- server_export_import_auto.go: 2 calls\n- server_compact.go: 2 calls\n- server_routing_validation_diagnostics.go: 1 call\n- server_eviction_test.go: 11 calls (DELETE entire file)\n\nPattern everywhere: store, err := s.getStorageForRequest(req) ā†’ store := s.storage\n\nreq.Cwd usage: Only for multi-repo routing. Local daemon always serves 1 repo, so routing is unused.\n\nMCP server: Uses separate daemons per repo (no req.Cwd usage found). NOT affected by cache removal.\n\nCache env vars to deprecate:\n- BEADS_DAEMON_MAX_CACHE_SIZE (used in server_core.go:63)\n- BEADS_DAEMON_CACHE_TTL (used in server_core.go:72)\n- BEADS_DAEMON_MEMORY_THRESHOLD_MB (used in server_cache_storage.go:47)\n\nServer struct fields to remove:\n- storageCache, cacheMu, maxCacheSize, cacheTTL, cleanupTicker, cacheHits, cacheMisses\n\nTests to delete:\n- server_eviction_test.go (entire file - 9 tests)\n- limits_test.go cache assertions\n\nSpecial consideration: ValidateDatabase endpoint uses findDatabaseForCwd() outside cache. Verify if used, then remove or inline.\n\nSafe to proceed with removal - cache always had 1 entry in local daemon model.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:19.3723-07:00","updated_at":"2025-12-17T23:18:29.111369-08:00","deleted_at":"2025-12-17T23:18:29.111369-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-379","title":"Implement `bd setup cursor` for Cursor IDE integration","description":"Create a `bd setup cursor` command that integrates Beads workflow into Cursor IDE via .cursorrules file. Unlike Claude Code (which has hooks), Cursor uses a static rules file to provide context to its AI.","status":"open","priority":3,"issue_type":"feature","created_at":"2025-11-11T23:32:22.170083-08:00","updated_at":"2025-11-11T23:32:22.170083-08:00"} +{"id":"bd-3852","title":"Add orphan detection migration","description":"Create migration to detect orphaned children in existing databases. Query: SELECT id FROM issues WHERE id LIKE '%.%' AND substr(id, 1, instr(id || '.', '.') - 1) NOT IN (SELECT id FROM issues). Log results, let user decide action (delete orphans or convert to top-level).","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-04T12:32:30.727044-08:00","updated_at":"2025-11-04T12:32:30.727044-08:00"} +{"id":"bd-3ggb","title":"Rebuild local binary","description":"Build and verify: go build -o bd ./cmd/bd \u0026\u0026 ./bd version","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:03.101428-08:00","updated_at":"2025-12-18T22:46:40.955673-08:00","closed_at":"2025-12-18T22:46:40.955673-08:00","dependencies":[{"issue_id":"bd-3ggb","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.748289-08:00","created_by":"daemon"},{"issue_id":"bd-3ggb","depends_on_id":"bd-4y4g","type":"blocks","created_at":"2025-12-18T22:43:20.950376-08:00","created_by":"daemon"}]} +{"id":"bd-3sz0","title":"Auto-repair stale merge driver configs with invalid placeholders","description":"Old bd versions (\u003c0.24.0) installed merge driver with invalid placeholders %L %R instead of %A %B. Add detection to bd doctor --fix: check if git config merge.beads.driver contains %L or %R, auto-repair to 'bd merge %A %O %A %B'. One-time migration for users who initialized with old versions.","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-21T23:16:10.762808-08:00","updated_at":"2025-11-21T23:16:28.892655-08:00","dependencies":[{"issue_id":"bd-3sz0","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:10.763612-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-3x9o","title":"Merge: bd-by0d","description":"branch: polecat/furiosa\ntarget: main\nsource_issue: bd-by0d\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:21:26.817906-08:00","updated_at":"2025-12-19T23:21:26.817906-08:00"} +{"id":"bd-401h","title":"Work on beads-7jl: Fix Windows installer file locking iss...","description":"Work on beads-7jl: Fix Windows installer file locking issue (GH#652). Close file handle before extraction in postinstall.js. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:57.873767-08:00","updated_at":"2025-12-19T23:20:05.747664-08:00","closed_at":"2025-12-19T23:20:05.747664-08:00"} +{"id":"bd-411u","title":"Document BEADS_DIR pattern for multi-agent workspaces (Gas Town)","description":"Gas Town and similar multi-agent systems need to configure separate beads databases per workspace/rig, distinct from any project-level beads.\n\n## Use Case\n\nIn Gas Town:\n- Each 'rig' (managed project) has multiple agents (polecats, refinery, witness)\n- All agents in a rig should share a single beads database at the rig level\n- This should be separate from any .beads/ the project itself uses\n- The BEADS_DIR env var enables this\n\n## Documentation Needed\n\n1. Add a section to docs explaining BEADS_DIR for multi-agent setups\n2. Example: setting BEADS_DIR in agent startup scripts/hooks\n3. Clarify interaction with project-level .beads/ (BEADS_DIR takes precedence)\n\n## Current Support\n\nAlready implemented in internal/beads/beads.go:FindDatabasePath():\n- BEADS_DIR env var is checked first (preferred)\n- BEADS_DB env var still supported (deprecated)\n- Falls back to .beads/ search in tree\n\nJust needs documentation for the multi-agent workspace pattern.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-15T22:08:22.158027-08:00","updated_at":"2025-12-15T22:08:22.158027-08:00"} +{"id":"bd-47tn","title":"Add bd daemon --stop-all command to kill all daemon processes","description":"Currently there's no easy way to stop all running bd daemon processes. Users must resort to pkill -f 'bd daemon' or similar shell commands.\n\nAdd a --stop-all flag to bd daemon that:\n1. Finds all running bd daemon processes (not just the current repo's daemon)\n2. Gracefully stops them all\n3. Reports how many were stopped\n\nThis is useful when:\n- Multiple daemons are running and causing race conditions\n- User wants a clean slate before running bd sync\n- Debugging daemon-related issues","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-13T06:34:45.080633-08:00","updated_at":"2025-12-16T01:14:49.501989-08:00","closed_at":"2025-12-14T17:33:03.057089-08:00"} +{"id":"bd-49kw","title":"Workaround for FastMCP outputSchema bug in Claude Code","description":"The beads MCP server (v0.23.1) successfully connects to Claude Code, but all tools fail to load with a schema validation error due to a bug in FastMCP 2.13.1.\n\nError: \"Invalid literal value, expected \\\"object\\\"\" in outputSchema.\n\nRoot Cause: FastMCP generates outputSchema with $ref at root level without \"type\": \"object\" for self-referential models (Issue).\n\nWorkaround: Use slash commands (/beads:ready) or wait for FastMCP fix.\n","status":"open","priority":1,"issue_type":"bug","created_at":"2025-11-20T18:55:39.041831-05:00","updated_at":"2025-11-20T18:55:39.041831-05:00"} +{"id":"bd-4ec8","title":"Widespread double JSON encoding bug in daemon mode RPC calls","description":"Multiple CLI commands had the same double JSON encoding bug found in bd-1048. All commands that called ResolveID via RPC used string(resp.Data) instead of properly unmarshaling the JSON response. This caused IDs to retain JSON quotes (\"bd-1048\" instead of bd-1048), which then got double-encoded when passed to subsequent RPC calls.\n\nAffected commands:\n- bd show (3 instances)\n- bd dep add/remove/tree (5 instances)\n- bd label add/remove/list (3 instances)\n- bd reopen (1 instance)\n\nRoot cause: resp.Data is json.RawMessage (already JSON-encoded), so string() conversion preserves quotes.\n\nFix: Replace all string(resp.Data) with json.Unmarshal(resp.Data, \u0026id) for proper deserialization.\n\nAll commands now tested and working correctly with daemon mode.","status":"closed","issue_type":"bug","created_at":"2025-11-02T22:33:01.632691-08:00","updated_at":"2025-12-17T23:13:40.533631-08:00","closed_at":"2025-12-17T16:26:05.851197-08:00"} +{"id":"bd-4hn","title":"wish: list \u0026 ready show issues as hierarchy tree","description":"`bd ready` and `bd list` just show a flat list, and it's up to the reader to parse which ones are dependent or sub-issues of others. It would be much easier to understand if they were shown in a tree format","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-08T06:38:24.016316945-07:00","updated_at":"2025-12-08T06:39:04.065882225-07:00"} +{"id":"bd-4lm3","title":"Correction: Pinned field already in v0.31.0","description":"Quick correction - the Pinned field is already in the current bd v0.31.0:\n\n```go\n// In beads internal/types/types.go\nPinned bool `json:\"pinned,omitempty\"`\n```\n\nSo you just need to:\n1. Add `Pinned bool `json:\"pinned,omitempty\"`` to BeadsMessage in types.go\n2. Sort pinned messages first in listBeads() after fetching\n\nNo migration needed - the field is already there.\n\n-- Mayor","status":"open","priority":2,"issue_type":"message","assignee":"gastown/crew/max","created_at":"2025-12-20T17:52:27.321458-08:00","updated_at":"2025-12-20T17:52:27.321458-08:00","labels":["from:beads-crew-dave","thread:thread-4dd70157dbc1"]} +{"id":"bd-4nqq","title":"Remove dead test code in info_test.go","description":"Code health review found cmd/bd/info_test.go has two tests permanently skipped:\n\n- TestInfoCommand\n- TestInfoCommandNoDaemon\n\nBoth skip with: 'Manual test - bd info command is working, see manual testing'\n\nThese are essentially dead code. Either automate them or remove them entirely.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:27.554019-08:00","updated_at":"2025-12-16T18:17:27.554019-08:00","dependencies":[{"issue_id":"bd-4nqq","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.381694-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-4q8","title":"bd cleanup --hard should skip tombstone creation for true permanent deletion","description":"## Problem\n\nWhen using bd cleanup --hard --older-than N --force, the command:\n1. Deletes closed issues older than N days (converting them to tombstones with NOW timestamp)\n2. Then tries to prune tombstones older than N days (finds none because they were just created)\n\nThis leaves the database bloated with fresh tombstones that will not be pruned.\n\n## Expected Behavior\n\nIn --hard mode, the deletion should be permanent without creating tombstones, since the user explicitly requested bypassing sync safety.\n\n## Workaround\n\nManually delete from database: sqlite3 .beads/beads.db 'DELETE FROM issues WHERE status=tombstone'\n\n## Fix Options\n\n1. In --hard mode, use a different delete path that does not create tombstones\n2. After deleting, immediately prune the just-created tombstones regardless of age\n3. Pass a skip_tombstone flag to the delete operation\n\nOption 1 is cleanest - --hard should mean permanent delete without tombstone.","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T01:33:36.580657-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-4qfb","title":"Improve bd doctor output formatting for better readability","description":"The current bd doctor output is a wall of text that's hard to process. Consider improvements like:\n- Grouping related checks into collapsible sections\n- Using color/bold for section headers\n- Showing only failures/warnings by default with --verbose for full output\n- Better visual hierarchy between major sections\n- Summary line at top (e.g., '24 checks passed, 0 warnings, 0 errors')","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T09:29:27.557578+11:00","updated_at":"2025-12-13T09:29:27.557578+11:00"} +{"id":"bd-4ri","title":"Fix TestFallbackToDirectModeEnablesFlush deadlock causing 10min test timeout","description":"## Problem\n\nTestFallbackToDirectModeEnablesFlush in direct_mode_test.go deadlocks for 9m59s before timing out, causing the entire test suite to take 10+ minutes instead of \u003c10 seconds.\n\n## Root Cause\n\nDatabase lock contention between test cleanup and flushToJSONL():\n- Test cleanup (line 36) tries to close DB via defer\n- flushToJSONL() (line 132) is still accessing DB\n- Results in deadlock: database/sql.(*DB).Close() waits for mutex while GetJSONLFileHash() holds it\n\n## Stack Trace Evidence\n\n```\ngoroutine 512 [sync.Mutex.Lock, 9 minutes]:\ndatabase/sql.(*DB).Close(0x14000643790)\n .../database/sql/sql.go:927 +0x84\ngithub.com/steveyegge/beads/cmd/bd.TestFallbackToDirectModeEnablesFlush.func1()\n .../direct_mode_test.go:36 +0xf4\n\nWhile goroutine running flushToJSONL() holds DB connection via GetJSONLFileHash()\n```\n\n## Impact\n\n- Test suite: 10+ minutes ā†’ should be \u003c10 seconds\n- ALL other tests pass in ~4 seconds\n- This ONE test accounts for 99.9% of test runtime\n\n## Related\n\nThis is the EXACT same issue documented in MAIN_TEST_REFACTOR_NOTES.md for why main_test.go refactoring was deferred - global state manipulation + DB cleanup = deadlock.\n\n## Fix Approaches\n\n1. **Add proper cleanup sequencing** - stop flush goroutines BEFORE closing DB\n2. **Use test-specific DB lifecycle** - ensure flush completes before cleanup\n3. **Mock the flush mechanism** - avoid real DB for testing this code path \n4. **Add explicit timeout handling** - fail fast with clear error instead of hanging\n\n## Files\n\n- cmd/bd/direct_mode_test.go:36-132\n- cmd/bd/autoflush.go:353 (validateJSONLIntegrity)\n- cmd/bd/autoflush.go:508 (flushToJSONLWithState)\n\n## Acceptance\n\n- Test passes without timeout\n- Test suite completes in \u003c10 seconds\n- No deadlock between cleanup and flush operations","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-21T20:09:00.794372-05:00","updated_at":"2025-12-17T23:13:40.533279-08:00","closed_at":"2025-12-17T17:25:07.626617-08:00"} +{"id":"bd-4sfl","title":"Merge: bd-14ie","description":"branch: polecat/toast\ntarget: main\nsource_issue: bd-14ie\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:23:37.360782-08:00","updated_at":"2025-12-19T23:23:37.360782-08:00"} +{"id":"bd-4uoc","title":"Code Review Followup Summary: PR #481 + PR #551","description":"## Merged PRs Summary\n\n### PR #551: Persist close_reason to issues table\n- āœ… Merged successfully\n- āœ… Bug fix: close_reason now persisted in database column (not just events table)\n- āœ… Comprehensive test coverage added\n- āœ… Handles reopen case (clearing close_reason)\n\n**Followup Issues Filed:**\n- bd-lxzx: Document close_reason in JSONL export format\n- bd-077e: Update CLI documentation for close_reason field\n\n---\n\n### PR #481: Context Engineering Optimizations (80-90% context reduction)\n- āœ… Merged successfully \n- āœ… Lazy tool discovery: discover_tools() + get_tool_info()\n- āœ… Minimal issue models: IssueMinimal (~80% smaller than full Issue)\n- āœ… Result compaction: Auto-compacts results \u003e20 items\n- āœ… All 28 tests passing\n- āš ļø Breaking change: ready() and list() return type changed\n\n**Followup Issues Filed:**\n- bd-b318: Add integration tests for CompactedResult\n- bd-4u2b: Make compaction settings configurable (THRESHOLD, PREVIEW_COUNT)\n- bd-2kf8: Document CompactedResult response format in CONTEXT_ENGINEERING.md\n- bd-pdr2: Document backwards compatibility considerations\n\n---\n\n## Overall Assessment\n\nBoth PRs are production-ready with solid implementations. All critical functionality works and tests pass. Followup issues focus on:\n1. Documentation improvements (5 issues)\n2. Integration test coverage (1 issue)\n3. Configuration flexibility (1 issue)\n4. Backwards compatibility guidance (1 issue)\n\nNo critical bugs or design issues found.\n\n## Review Completed By\nCode review process completed. Issues auto-created for tracking improvements.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:59.214886-08:00","updated_at":"2025-12-14T14:25:59.214886-08:00","dependencies":[{"issue_id":"bd-4uoc","depends_on_id":"bd-otf4","type":"discovered-from","created_at":"2025-12-14T14:25:59.216884-08:00","created_by":"stevey","metadata":"{}"},{"issue_id":"bd-4uoc","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:59.217296-08:00","created_by":"stevey","metadata":"{}"}]} +{"id":"bd-4y4g","title":"Bump version in all files","description":"Run ./scripts/bump-version.sh {{version}} to update 10 version files. Then run with --commit after info.go is updated.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:01.859728-08:00","updated_at":"2025-12-18T22:46:24.537336-08:00","closed_at":"2025-12-18T22:46:24.537336-08:00","dependencies":[{"issue_id":"bd-4y4g","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.623724-08:00","created_by":"daemon"},{"issue_id":"bd-4y4g","depends_on_id":"bd-8v2","type":"blocks","created_at":"2025-12-18T22:43:20.823329-08:00","created_by":"daemon"}]} +{"id":"bd-56x","title":"Review PR #514: fix plugin install docs","description":"Review and merge PR #514 from aspiers. This PR fixes incorrect docs for installing Claude Code plugin from source in docs/PLUGIN.md. Clarifies shell vs Claude Code commands and fixes the . vs ./beads argument issue. URL: https://github.com/anthropics/beads/pull/514","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:15:16.865354+11:00","updated_at":"2025-12-13T07:07:19.729213-08:00","closed_at":"2025-12-13T07:07:19.729213-08:00"} +{"id":"bd-581b80b3","title":"bd find-duplicates - AI-powered duplicate detection","description":"Find semantically duplicate issues.\n\nApproaches:\n1. Mechanical: Exact title/description matching\n2. Embeddings: Cosine similarity (cheap, scalable)\n3. AI: LLM-based semantic comparison (expensive, accurate)\n\nUses embeddings by default for \u003e100 issues.\n\nFiles: cmd/bd/find_duplicates.go (new)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-10-29T20:49:49.126801-07:00","updated_at":"2025-12-17T22:58:34.563511-08:00","closed_at":"2025-12-17T22:58:34.563511-08:00","close_reason":"Closed"} +{"id":"bd-589x","title":"HANDOFF: Version 0.30.7 release in progress","description":"## Context\nDoing a 0.30.7 patch release with bug fixes.\n\n## What's done\n- Fixed #657: bd graph nil pointer crash (graph.go:102)\n- Fixed #652: Windows npm installer file lock (postinstall.js)\n- Updated CHANGELOG.md and info.go\n- Pushed to main, CI running (run 20390861825)\n- Created version-bump molecule template (bd-6s61) and instantiated for 0.30.7 (bd-8pyn)\n\n## In progress\nMolecule bd-8pyn has 3 remaining tasks:\n - bd-dxo7: Wait for CI to pass\n - bd-7l70: Verify release artifacts \n - bd-5c91: Update local installation\n\n## Check CI\n gh run list --repo steveyegge/beads --limit 1\n gh run view 20390861825 --repo steveyegge/beads\n\n## New feature filed\nbd-n777: Timer beads for scheduled agent callbacks\nDesign for Deacon-managed timers that can interrupt agents via tmux\n\n## Resume commands\n bd --no-daemon show bd-8pyn\n gh run list --repo steveyegge/beads --limit 1","status":"closed","priority":2,"issue_type":"message","assignee":"beads/dave","created_at":"2025-12-19T23:06:14.902334-08:00","updated_at":"2025-12-20T00:25:59.596546-08:00","closed_at":"2025-12-20T00:25:59.596546-08:00","close_reason":"Handoff completed - v0.30.7 released","sender":"Steve Yegge","ephemeral":true} +{"id":"bd-5b6e","title":"Add tests for helper functions (GetDirtyIssueHash, GetAllDependencyRecords, export hashes)","description":"Several utility functions have 0% coverage:\n- GetDirtyIssueHash (dirty.go)\n- GetAllDependencyRecords (dependencies.go)\n- GetExportHash, SetExportHash, ClearAllExportHashes (hash.go)\n\nThese are lower priority but should have basic coverage.","status":"open","priority":4,"issue_type":"task","created_at":"2025-11-01T22:40:58.989976-07:00","updated_at":"2025-11-01T22:40:58.989976-07:00"} +{"id":"bd-5qim","title":"Optimize GetReadyWork performance - 752ms on 10K database (target: \u003c50ms)","notes":"# Performance Analysis (10K Issue Database)\n\nAnalyzed using CPU profiles from benchmark suite on Apple M2 Pro.\n\n## Operation Performance\n\n| Operation | Time | Allocations | Memory |\n|----------------------------------|---------|-------------|--------|\n| bd ready (GetReadyWork) | ~752ms | 167,466 | 16MB |\n| bd list (SearchIssues no filter) | ~11.6ms | 89,214 | 5.8MB |\n| bd list (SearchIssues filtered) | ~9.2ms | 62,365 | 3.5MB |\n| bd create (CreateIssue) | ~2.6ms | 146 | 8.6KB |\n| bd update (UpdateIssue) | ~0.32ms | 364 | 15KB |\n| bd close (UpdateIssue) | ~0.32ms | 364 | 15KB |\n\n**Target: \u003c50ms for all operations on 10K database**\n\n**Current issue: GetReadyWork is 15x over target (752ms vs 50ms)**\n\n## Root Cause\n\nGetReadyWork (internal/storage/sqlite/ready.go:90-128) uses recursive CTE to propagate blocking:\n- 65x slower than SearchIssues\n- Recalculates entire blocked issue tree on every call\n- Algorithm:\n 1. Find directly blocked issues via 'blocks' dependencies\n 2. Recursively propagate blockage to descendants (max depth: 50)\n 3. Exclude all blocked issues from results\n\n## CPU Profile Analysis\n\n- Database syscalls (pthread_cond_signal, syscall6): ~75%\n- SQLite engine overhead: inherent to recursive CTE\n- Application code (query construction): \u003c1%\n\n**Bottleneck is the recursive CTE query execution, not application code.**\n\n## Optimization Recommendations\n\n### High Impact (Likely to achieve \u003c50ms target)\n\n1. **Cache blocked issue calculation**\n - Add `blocked_issues` table updated on dependency changes\n - Trade write complexity for read speed (ready called \u003e\u003e dependency changes)\n - Eliminates recursive CTE on every read\n\n2. **Add/verify database indexes**\n ```sql\n CREATE INDEX IF NOT EXISTS idx_dependencies_blocked \n ON dependencies(issue_id, type, depends_on_id);\n CREATE INDEX IF NOT EXISTS idx_issues_status \n ON issues(status);\n ```\n\n### Medium Impact\n\n3. **Reduce allocations** (167K allocations for GetReadyWork)\n - Profile `scanIssues()` for object pooling opportunities\n - Reuse slice capacity for repeated calls\n\n### Low Impact (Not recommended)\n- Query optimization for CRUD operations (already \u003c3ms)\n- Connection pooling tuning (not showing in profiles)\n\n## Verification\n\nRun benchmarks to validate optimization:\n```bash\nmake bench-quick\ngo tool pprof -http=:8080 internal/storage/sqlite/bench-cpu-*.prof\n```\n\nProfile files automatically generated in `internal/storage/sqlite/`.","status":"closed","issue_type":"bug","created_at":"2025-11-14T09:02:46.507526-08:00","updated_at":"2025-12-17T23:13:40.534258-08:00","closed_at":"2025-12-17T16:21:37.918868-08:00"} +{"id":"bd-6fe4622f","title":"Remove unreachable utility functions","description":"Several small utility functions are unreachable:\n\nFiles to clean:\n1. `internal/storage/sqlite/hash.go` - `computeIssueContentHash` (line 17)\n - Check if entire file can be deleted if only contains this function\n\n2. `internal/config/config.go` - `FileUsed` (line 151)\n - Delete unused config helper\n\n3. `cmd/bd/git_sync_test.go` - `verifyIssueOpen` (line 300)\n - Delete dead test helper\n\n4. `internal/compact/haiku.go` - `HaikuClient.SummarizeTier2` (line 81)\n - Tier 2 summarization not implemented\n - Options: implement feature OR delete method\n\nImpact: Removes 50-100 LOC depending on decisions","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-28T16:20:02.434573-07:00","updated_at":"2025-12-17T22:58:34.563993-08:00","closed_at":"2025-12-17T22:58:34.563993-08:00","close_reason":"Closed"} +{"id":"bd-6gd","title":"Remove legacy MCP Agent Mail integration","description":"## Summary\n\nRemove the legacy MCP Agent Mail system that requires an external HTTP server. Keep the native `bd mail` system which stores messages as git-synced issues.\n\n## Background\n\nTwo mail systems exist in the codebase:\n1. **Legacy Agent Mail** (`bd message`) - External server dependency, complex setup\n2. **Native bd mail** (`bd mail`) - Built-in, git-synced, no dependencies\n\nThe legacy system causes confusion and is no longer needed. Gas Town's Town Mail will use the native `bd mail` system.\n\n## Files to Delete\n\n### CLI Command\n- [ ] `cmd/bd/message.go` - The `bd message` command implementation\n\n### MCP Integration\n- [ ] `integrations/beads-mcp/src/beads_mcp/mail.py` - HTTP wrapper for Agent Mail server\n- [ ] `integrations/beads-mcp/src/beads_mcp/mail_tools.py` - MCP tool definitions\n- [ ] `integrations/beads-mcp/tests/test_mail.py` - Tests for legacy mail\n\n### Documentation\n- [ ] `docs/AGENT_MAIL.md`\n- [ ] `docs/AGENT_MAIL_QUICKSTART.md`\n- [ ] `docs/AGENT_MAIL_DEPLOYMENT.md`\n- [ ] `docs/AGENT_MAIL_MULTI_WORKSPACE_SETUP.md`\n- [ ] `docs/adr/002-agent-mail-integration.md`\n\n## Code to Update\n\n- [ ] Remove `message` command registration from `cmd/bd/main.go`\n- [ ] Remove mail tool imports/registration from MCP server `__init__.py` or `server.py`\n- [ ] Check for any other references to Agent Mail in the codebase\n\n## Verification\n\n- [ ] `bd message` command no longer exists\n- [ ] `bd mail` command still works\n- [ ] MCP server starts without errors\n- [ ] Tests pass\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T23:04:04.099935-08:00","updated_at":"2025-12-17T23:13:24.128752-08:00","closed_at":"2025-12-17T23:13:24.128752-08:00","close_reason":"Removed legacy MCP Agent Mail integration. Kept native bd mail system."} +{"id":"bd-6pc","title":"Implement bd pin/unpin commands","description":"Add 'bd pin \u003cid\u003e' and 'bd unpin \u003cid\u003e' commands to toggle the pinned status of issues. Should support multiple IDs like other bd commands.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:28.292937-08:00","updated_at":"2025-12-19T17:43:35.713398-08:00","closed_at":"2025-12-19T00:35:31.612589-08:00","dependencies":[{"issue_id":"bd-6pc","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.119852-08:00","created_by":"daemon"},{"issue_id":"bd-6pc","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.352848-08:00","created_by":"daemon"}]} +{"id":"bd-6rl","title":"Merge3Way public API does not expose TTL parameter","description":"The public Merge3Way() function in merge.go does not allow callers to configure the tombstone TTL. It hard-codes the default via merge3WayWithTTL(). While merge3WayWithTTL() exists, it is unexported (lowercase). This means the CLI and tests cannot configure TTL at merge time. Use cases: testing with different TTL values, per-repository TTL configuration, debugging with short TTL, supporting --ttl flag in bd merge command (mentioned in design doc bd-zvg). Recommendation: Export Merge3WayWithTTL (rename to uppercase). Files: internal/merge/merge.go:77, 292-298","status":"open","priority":3,"issue_type":"feature","created_at":"2025-12-05T16:36:15.756814-08:00","updated_at":"2025-12-05T16:36:15.756814-08:00"} +{"id":"bd-6s61","title":"Version Bump: {{version}}","description":"Release checklist for version {{version}}. This molecule ensures all release steps are completed properly.","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-19T22:55:42.487701-08:00","updated_at":"2025-12-20T01:18:47.905306-08:00","closed_at":"2025-12-20T01:18:47.905306-08:00","close_reason":"Version bump complete","labels":["molecule","template"]} +{"id":"bd-6sm6","title":"Improve test coverage for internal/export (37.1% ā†’ 60%)","description":"The export package has only 37.1% test coverage. Export functionality needs good coverage to ensure data integrity.\n\nCurrent coverage: 37.1%\nTarget coverage: 60%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:06.802277-08:00","updated_at":"2025-12-13T21:01:19.08088-08:00"} +{"id":"bd-746","title":"Fix resolvePartialID stub in workflow.go","description":"The resolvePartialID function at workflow.go:921-925 is a stub that just returns the ID unchanged. Should use utils.ResolvePartialID for proper partial ID resolution in direct mode (non-daemon).","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-17T22:22:57.586917-08:00","updated_at":"2025-12-17T22:34:07.270168-08:00","closed_at":"2025-12-17T22:34:07.270168-08:00"} +{"id":"bd-74w1","title":"Consolidate duplicate path-finding utilities (findJSONLPath, findBeadsDir, findGitRoot)","description":"Code health review found these functions defined in multiple places:\n\n- findJSONLPath() in autoflush.go:45-73 and doctor/fix/migrate.go\n- findBeadsDir() in autoimport.go:197-239 (with git worktree handling)\n- findGitRoot() in autoimport.go:242-269 (Windows path conversion)\n\nThe beads package has public FindBeadsDir() and FindJSONLPath() APIs that should be used consistently.\n\nImpact: Bug fixes need to be applied in multiple places. Git worktree handling may not be replicated everywhere.\n\nFix: Consolidate all implementations to use the beads package APIs. Remove duplicates.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-16T18:17:16.694293-08:00","updated_at":"2025-12-16T18:17:16.694293-08:00","dependencies":[{"issue_id":"bd-74w1","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.526122-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-77gm","title":"Import reports misleading '0 created, 0 updated' when actually importing all issues","description":"When running 'bd import' on a fresh database (no existing issues), the command reports 'Import complete: 0 created, 0 updated' even though it successfully imported all issues from the JSONL file.\n\n**Steps to reproduce:**\n1. Delete .beads/beads.db\n2. Run: bd import .beads/issues.jsonl\n3. Observe output: 'Import complete: 0 created, 0 updated'\n4. Run: bd list\n5. Confirm: All issues are actually present in the database\n\n**Expected behavior:**\nReport the actual number of issues imported, e.g., 'Import complete: 523 created, 0 updated'\n\n**Actual behavior:**\n'Import complete: 0 created, 0 updated' (misleading - makes user think import failed)\n\n**Impact:**\n- Users think import failed when it succeeded\n- Confusing during database sync operations (e.g., after git pull)\n- Makes debugging harder (can't tell if import actually worked)\n\n**Context:**\nDiscovered during VC session when syncing database after git pull. The misleading message caused confusion about whether the database was properly synced with the canonical JSONL file.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-11-09T16:20:13.191156-08:00","updated_at":"2025-11-09T16:20:13.191156-08:00"} {"id":"bd-7b7h","title":"bd sync --merge fails due to chicken-and-egg: .beads/ always dirty","description":"## Problem\n\nWhen sync.branch is configured (e.g., beads-sync), the bd sync workflow creates a chicken-and-egg problem:\n\n1. `bd sync` commits changes to beads-sync via worktree\n2. `bd sync` copies JSONL to main working dir via `copyJSONLToMainRepo()` (sync.go line 364, worktree.go line 678-685)\n3. The copy is NOT committed to main - it just updates the working tree\n4. `bd sync --merge` checks for clean working dir (sync.go line 1547-1548)\n5. `bd sync --merge` FAILS because .beads/issues.jsonl is uncommitted!\n\n## Impact\n\n- sync.branch workflow is fundamentally broken\n- Users cannot periodically merge beads-sync ā†’ main\n- Main branch always shows as dirty\n- Creates confusion about git state\n\n## Root Cause\n\nsync.go:1547-1548:\n```go\nif len(strings.TrimSpace(string(statusOutput))) \u003e 0 {\n return fmt.Errorf(\"main branch has uncommitted changes, please commit or stash them first\")\n}\n```\n\nThis check blocks merge when ANY uncommitted changes exist, including the .beads/ changes that `bd sync` itself created.\n\n## Proposed Fix\n\nOption A: Exclude .beads/ from the clean check in `mergeSyncBranch`:\n```go\n// Check if there are non-beads uncommitted changes\nstatusCmd := exec.CommandContext(ctx, \"git\", \"status\", \"--porcelain\", \"--\", \":!.beads/\")\n```\n\nOption B: Auto-stash .beads/ changes before merge, restore after\n\nOption C: Change the workflow - do not copy JSONL to main working dir, instead always read from worktree\n\n## Files to Modify\n\n- cmd/bd/sync.go:1540-1549 (mergeSyncBranch function)\n- Possibly internal/syncbranch/worktree.go (copyJSONLToMainRepo)","notes":"## Fix Implemented\n\nModified cmd/bd/sync.go mergeSyncBranch function:\n\n1. **Exclude .beads/ from dirty check** (line 1543):\n Changed `git status --porcelain` to `git status --porcelain -- :!.beads/`\n This allows merge to proceed when only .beads/ has uncommitted changes.\n\n2. **Restore .beads/ to HEAD before merge** (lines 1553-1561):\n Added `git checkout HEAD -- .beads/` before merge to prevent\n \"Your local changes would be overwritten by merge\" errors.\n The .beads/ changes are redundant since they came FROM beads-sync.\n\n## Testing\n\n- All cmd/bd sync/merge tests pass\n- All internal/syncbranch tests pass\n- Manual verification needed for full workflow","status":"tombstone","issue_type":"bug","created_at":"2025-12-16T23:06:06.97703-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-bwk2","title":"Centralize error handling patterns in storage layer","description":"80+ instances of inconsistent error handling across sqlite.go with mix of %w, %v, and no wrapping.\n\nLocation: internal/storage/sqlite/sqlite.go (throughout)\n\nProblem:\n- Some use fmt.Errorf(\"op failed: %w\", err) - correct wrapping\n- Some use fmt.Errorf(\"op failed: %v\", err) - loses error chain\n- Some return err directly - no context\n- Hard to debug production issues\n- Can't distinguish error types\n\nSolution: Create internal/storage/sqlite/errors.go:\n- Define sentinel errors (ErrNotFound, ErrInvalidID, etc.)\n- Create wrapDBError(op string, err error) helper\n- Convert sql.ErrNoRows to ErrNotFound\n- Always wrap with operation context\n\nImpact: Lost error context; inconsistent messages; hard to debug\n\nEffort: 5-7 hours","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-16T14:51:54.974909-08:00","updated_at":"2025-11-16T14:51:54.974909-08:00"} -{"id":"bd-su45","title":"Protect pinned issues from bd cleanup/compact","description":"Update bd cleanup and bd compact to never delete pinned issues, even if they are closed. Pinned issues should persist indefinitely as reference material.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:46.204783-08:00","updated_at":"2025-12-19T17:43:35.712617-08:00","closed_at":"2025-12-19T00:43:04.06406-08:00","dependencies":[{"issue_id":"bd-su45","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.64582-08:00","created_by":"daemon"},{"issue_id":"bd-su45","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.857586-08:00","created_by":"daemon"}]} -{"id":"bd-kwro.6","title":"Mail Commands: bd mail send/inbox/read/ack","description":"Implement core mail commands in cmd/bd/mail.go\n\nCommands:\n- bd mail send \u003crecipient\u003e -s 'Subject' -m 'Body' [--urgent]\n - Creates issue with type=message, sender=identity, assignee=recipient\n - --urgent sets priority=0\n \n- bd mail inbox [--from \u003csender\u003e] [--priority \u003cn\u003e]\n - Lists open messages where assignee=my identity\n - Sorted by priority, then date\n \n- bd mail read \u003cid\u003e\n - Shows full message content (subject, body, sender, timestamp)\n - Does NOT close (separate from ack)\n \n- bd mail ack \u003cid\u003e\n - Marks message as read by closing it\n - Can ack multiple: bd mail ack \u003cid1\u003e \u003cid2\u003e ...\n\nRequires: Identity configuration (bd-kwro.7)","status":"tombstone","issue_type":"task","created_at":"2025-12-16T03:02:12.103755-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-tvu3","title":"Improve test coverage for internal/beads (48.1% ā†’ 70%)","description":"The beads package is a core package with 48.1% coverage. As the primary package for issue management, it should have at least 70% coverage.\n\nCurrent coverage: 48.1%\nTarget coverage: 70%","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-13T20:42:59.739142-08:00","updated_at":"2025-12-13T21:01:14.874359-08:00"} -{"id":"bd-pzw7","title":"gt handoff deadlock at handoff.go:125","notes":"When running 'gt handoff -m \"message\"' after successful MR submit, go panics with 'fatal error: all goroutines are asleep - deadlock\\!' at handoff.go:125. The shutdown request still appears to be sent successfully but the command crashes. Stack trace shows issue is in runHandoff select statement.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-19T23:22:12.46315-08:00","updated_at":"2025-12-19T23:22:18.613883-08:00"} -{"id":"bd-r6a.1","title":"Revert/remove YAML workflow system","description":"Revert the recent commit and remove all YAML workflow code:\n\n1. `git revert aae8407a` (the commit we just pushed with workflow fixes)\n2. Remove `cmd/bd/templates/workflows/` directory\n3. Remove workflow.go or gut it to minimal stub\n4. Remove WorkflowTemplate types from internal/types/workflow.go\n5. Remove any workflow-related RPC handlers\n\nKeep only minimal scaffolding if needed for the new template system.","status":"closed","issue_type":"task","created_at":"2025-12-17T22:42:07.339684-08:00","updated_at":"2025-12-17T22:46:08.606088-08:00","closed_at":"2025-12-17T22:46:08.606088-08:00","dependencies":[{"issue_id":"bd-r6a.1","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:42:07.340117-08:00","created_by":"daemon"}]} +{"id":"bd-7bbc4e6a","title":"Add MCP server functions for repair commands","description":"**Summary:** Added MCP server repair functions for agent dependency management, system validation, and pollution detection. Implemented across BdClientBase, BdCliClient, and daemon clients to enhance system diagnostics and self-healing capabilities.\n\n**Key Decisions:** \n- Expose repair_deps(), detect_pollution(), validate() via MCP server\n- Create abstract method stubs with fallback to CLI execution\n- Use @mcp.tool decorators for function registration\n\n**Resolution:** Successfully implemented comprehensive repair command infrastructure, enabling more robust system health monitoring and automated remediation with full CLI and daemon support.","notes":"Implemented all three MCP server functions:\n\n1. **repair_deps(fix=False)** - Find/fix orphaned dependencies\n2. **detect_pollution(clean=False)** - Detect/clean test issues \n3. **validate(checks=None, fix_all=False)** - Run comprehensive health checks\n\nChanges:\n- Added abstract methods to BdClientBase\n- Implemented in BdCliClient (CLI execution)\n- Added NotImplementedError stubs in BdDaemonClient (falls back to CLI)\n- Created wrapper functions in tools.py\n- Registered @mcp.tool decorators in server.py\n\nAll commands tested and working with --no-daemon flag.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-28T19:37:55.72639-07:00","updated_at":"2025-12-16T01:08:11.983953-08:00","closed_at":"2025-11-07T19:38:12.152437-08:00"} +{"id":"bd-7di","title":"worktree: any bd command is slow","description":"in a git worktree any bd command is slow, with a 2-3s pause before any results are shown. The identical command with `--no-daemon` is near instant.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-05T15:33:42.924618693-07:00","updated_at":"2025-12-05T15:33:42.924618693-07:00"} +{"id":"bd-7h5","title":"Add pinned field to issue schema","description":"Add boolean 'pinned' field to the issue schema. When true, the issue is marked as a persistent context marker that should not be treated as a work item.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:26.767247-08:00","updated_at":"2025-12-19T00:08:59.854605-08:00","closed_at":"2025-12-19T00:08:59.854605-08:00","close_reason":"Implemented by polecat Slit - pushed to main","dependencies":[{"issue_id":"bd-7h5","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:55.98635-08:00","created_by":"daemon"}]} +{"id":"bd-7h7","title":"bd init should stop running daemon to avoid stale cache","description":"When running bd init, any running daemon continues with stale cached data, causing bd stats and other commands to show old counts.\n\nRepro:\n1. Have daemon running with 788 issues cached\n2. Clean JSONL to 128 issues, delete db, run bd init\n3. bd stats still shows 788 (daemon cache)\n4. Must manually run bd daemon --stop\n\nFix: bd init should automatically stop any running daemon before reinitializing.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T13:26:47.117226-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-7m16","title":"GH#519: bd sync fails when sync.branch is currently checked-out branch","description":"bd sync tries to create worktree for sync.branch even when already on that branch. Should commit directly instead. See GitHub issue #519.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:36.613211-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-7tuu","title":"Commit and push release","description":"git add -A \u0026\u0026 git commit \u0026\u0026 git push to trigger CI","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:02.053382-08:00","updated_at":"2025-12-20T01:23:52.484043-08:00","closed_at":"2025-12-20T01:23:52.484043-08:00","close_reason":"Superseded by 0.30.7 release - already committed and pushed","dependencies":[{"issue_id":"bd-7tuu","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.021087-08:00","created_by":"daemon"},{"issue_id":"bd-7tuu","depends_on_id":"bd-hw3w","type":"blocks","created_at":"2025-12-19T22:56:23.291591-08:00","created_by":"daemon"}]} +{"id":"bd-7yg","title":"Git merge driver uses invalid placeholders (%L, %R instead of %A, %B)","description":"## Problem\n\nThe beads git merge driver is configured with invalid Git placeholders:\n\n```\ngit config merge.beads.driver \"bd merge %A %O %L %R\"\n```\n\nGit doesn't recognize `%L` or `%R` as valid merge driver placeholders. The valid placeholders are:\n- `%O` = base (common ancestor)\n- `%A` = current version (ours)\n- `%B` = other version (theirs)\n\n## Impact\n\n- Affects ALL users when they have `.beads/beads.jsonl` merge conflicts\n- Automatic JSONL merge fails with error: \"error reading left file: failed to open file: open 7: no such file or directory\"\n- Users must manually resolve conflicts instead of getting automatic merge\n\n## Root Cause\n\nThe `bd init` command (or wherever the merge driver is configured) is using non-standard placeholders. When Git encounters `%L` and `%R`, it either passes them literally or interprets them incorrectly.\n\n## Fix\n\nUpdate the merge driver configuration to:\n```\ngit config merge.beads.driver \"bd merge %A %O %A %B\"\n```\n\nWhere:\n- 1st `%A` = output file (current file, will be overwritten)\n- `%O` = base (common ancestor)\n- 2nd `%A` = left/current version\n- `%B` = right/other version\n\n## Action Items\n\n1. Fix `bd init` (or equivalent setup command) to use correct placeholders\n2. Add migration/warning for existing users with misconfigured merge driver\n3. Update documentation with correct merge driver setup\n4. Consider adding validation when `bd init` is run","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-21T19:51:55.747608-05:00","updated_at":"2025-12-17T23:13:40.532368-08:00","closed_at":"2025-12-17T17:24:52.678668-08:00"} +{"id":"bd-89f89fc0","title":"Remove unreachable RPC methods","description":"Several RPC server and client methods are unreachable and should be removed:\n\nServer methods (internal/rpc/server.go):\n- `Server.GetLastImportTime` (line 2116)\n- `Server.SetLastImportTime` (line 2123)\n- `Server.findJSONLPath` (line 2255)\n\nClient methods (internal/rpc/client.go):\n- `Client.Import` (line 311) - RPC import not used (daemon uses autoimport)\n\nEvidence:\n```bash\ngo run golang.org/x/tools/cmd/deadcode@latest -test ./...\n```\n\nImpact: Removes ~80 LOC of unused RPC code","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-28T16:20:02.432202-07:00","updated_at":"2025-12-17T22:58:34.564401-08:00","closed_at":"2025-12-17T22:58:34.564401-08:00","close_reason":"Closed"} +{"id":"bd-8e0q","title":"Merge: beads-ocs","description":"branch: polecat/valkyrie\ntarget: main\nsource_issue: beads-ocs\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:24:45.281478-08:00","updated_at":"2025-12-19T23:24:45.281478-08:00"} +{"id":"bd-8fgn","title":"test hash length","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T13:49:32.113843-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-8g8","title":"Fix G304 potential file inclusion in cmd/bd/tips.go:259","description":"Linting issue: G304: Potential file inclusion via variable (gosec) at cmd/bd/tips.go:259:18. Error: if data, err := os.ReadFile(settingsPath); err == nil {","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:34:57.189730843-07:00","updated_at":"2025-12-17T23:13:40.534569-08:00","closed_at":"2025-12-17T16:46:11.029837-08:00"} {"id":"bd-8hy","title":"Kill running daemons","description":"Stop all bd daemons before release:\n\n```bash\npkill -f 'bd.*daemon' || true\nsleep 1\npgrep -lf 'bd.*daemon' # Should show nothing\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:58.255478-08:00","updated_at":"2025-12-18T22:43:55.394966-08:00","closed_at":"2025-12-18T22:43:55.394966-08:00","dependencies":[{"issue_id":"bd-8hy","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.23168-08:00","created_by":"daemon"}]} -{"id":"bd-r6a.4","title":"Add bd template list command","description":"Add a convenience command to list available templates:\n\nbd template list\n\nThis is equivalent to 'bd list --label=template' but more discoverable.\nCould also show variable placeholders found in each template.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T22:43:47.525316-08:00","updated_at":"2025-12-17T23:02:45.700582-08:00","closed_at":"2025-12-17T23:02:45.700582-08:00","dependencies":[{"issue_id":"bd-r6a.4","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:47.525743-08:00","created_by":"daemon"},{"issue_id":"bd-r6a.4","depends_on_id":"bd-r6a.2","type":"blocks","created_at":"2025-12-17T22:44:03.474353-08:00","created_by":"daemon"}]} -{"id":"bd-aydr.3","title":"Add git operations for --hard reset","description":"Implement git integration for hard reset mode.\n\n## Operations Needed\n1. `git rm -rf .beads/*.jsonl` - remove data files from index\n2. `git commit -m 'beads: reset to clean state'` - commit removal\n3. After re-init: `git add .beads/` and commit fresh state\n\n## Edge Cases to Handle\n- Uncommitted changes in .beads/ - warn or error\n- Detached HEAD state - warn, maybe block\n- Git not initialized - skip git ops, warn\n- Git operations fail mid-way - clear error messaging\n\n## Interface\n```go\ntype GitState struct {\n IsRepo bool\n IsDirty bool // uncommitted changes in .beads/\n IsDetached bool // detached HEAD\n Branch string // current branch name\n}\n\nfunc CheckGitState(beadsDir string) (*GitState, error)\nfunc GitRemoveBeads(beadsDir string) error\nfunc GitCommitReset(message string) error\nfunc GitAddAndCommit(beadsDir, message string) error\n```\n\n## Location\n`internal/reset/git.go` - keep with reset package for now\n\nNote: Codebase has no central git package. internal/compact/git.go is compact-specific.\nFuture refactoring could extract shared git utilities, but YAGNI for now.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:52.798312+11:00","updated_at":"2025-12-13T10:13:32.611131+11:00","closed_at":"2025-12-13T09:17:40.785927+11:00","dependencies":[{"issue_id":"bd-aydr.3","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:52.798715+11:00","created_by":"daemon"}]} +{"id":"bd-8pyn","title":"Version Bump: 0.30.7","description":"Release checklist for version 0.30.7. This molecule ensures all release steps are completed properly.","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-19T22:56:48.648694-08:00","updated_at":"2025-12-20T00:25:59.529183-08:00","closed_at":"2025-12-20T00:25:59.529183-08:00","close_reason":"Version 0.30.7 released successfully - all steps completed"} +{"id":"bd-8v2","title":"Add {{version}} to versionChanges in info.go","description":"Add new entry at TOP of versionChanges in cmd/bd/info.go with release notes from CHANGELOG.md. Must do before bump-version.sh --commit.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:00.482846-08:00","updated_at":"2025-12-18T22:45:21.465817-08:00","closed_at":"2025-12-18T22:45:21.465817-08:00","dependencies":[{"issue_id":"bd-8v2","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.496649-08:00","created_by":"daemon"},{"issue_id":"bd-8v2","depends_on_id":"bd-kyo","type":"blocks","created_at":"2025-12-18T22:43:20.69619-08:00","created_by":"daemon"}]} +{"id":"bd-90v","title":"bd prime: AI context loading and Claude Code integration","description":"Implement `bd prime` command and Claude Code hooks for context recovery. Hooks work with BOTH MCP server and CLI approaches - they solve the context memory problem (keeping bd workflow fresh after compaction) not the tool access problem (MCP vs CLI).","status":"open","priority":2,"issue_type":"epic","created_at":"2025-11-11T23:31:12.119012-08:00","updated_at":"2025-11-12T00:11:07.743189-08:00"} +{"id":"bd-95k8","title":"Pinned field available in beads v0.37.0","description":"Hey max,\n\nHeads up on your mail overhaul work:\n\n1. **Pinned field is available** - beads v0.37.0 (released by dave earlier) includes the pinned field on issues. You'll want to add this to BeadsMessage in types.go.\n\n2. **Database migration** - Check if existing .beads databases need migration to support the pinned field. Run `bd doctor` to see if it flags anything.\n\n3. **Sorting task** - Once you have the pinned field, gt-ngu1 (pinned beads first in mail inbox) needs implementing. Since messages now come from `bd list --type=message`, you'll need to either:\n - Sort in listBeads() after fetching, or\n - Ensure bd list returns pinned items first (may already do this?)\n\nCheck what version of bd you're building against.\n\n-- Mayor","status":"open","priority":2,"issue_type":"message","assignee":"gastown/crew/max","created_at":"2025-12-20T17:51:57.315956-08:00","updated_at":"2025-12-20T17:51:57.315956-08:00","labels":["from:beads-crew-dave","thread:thread-71ac20c7e432"]} +{"id":"bd-9cdc","title":"Update docs for import bug fix","description":"Update AGENTS.md, README.md, TROUBLESHOOTING.md with import.orphan_handling config documentation. Document resurrection behavior, tombstones, config modes. Add troubleshooting section for import failures with deleted parents.","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-04T12:32:30.770415-08:00","updated_at":"2025-11-04T12:32:30.770415-08:00"} +{"id":"bd-9g1z","title":"Fix or remove TestFindJSONLPathDefault (issue #356)","description":"Code health review found .test-skip permanently skips TestFindJSONLPathDefault.\n\nThe test references issue #356 about wrong JSONL filename expectations (issues.jsonl vs beads.jsonl).\n\nTest file: internal/beads/beads_test.go\n\nThe underlying migration from beads.jsonl to issues.jsonl may be complete, so either:\n1. Fix the test expectations\n2. Remove the test if no longer needed\n3. Document why it remains skipped","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-16T18:17:31.33975-08:00","updated_at":"2025-12-16T18:17:31.33975-08:00","dependencies":[{"issue_id":"bd-9g1z","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.169617-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-9usz","title":"Test suite hangs/never finishes","description":"Running 'go test ./... -count=1' hangs indefinitely. The full test suite never completes, making it difficult to verify changes. Need to investigate which tests are hanging and fix or add timeouts.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-16T21:56:27.80191-08:00","updated_at":"2025-12-16T21:56:27.80191-08:00"} {"id":"bd-a0cp","title":"Consider using types.Status in merge package for type safety","description":"The merge package uses string for status comparison (e.g., result.Status == closed, issue.Status == StatusTombstone). The types package defines Status as a type alias with validation. While the merge package needs its own Issue struct for JSONL flexibility, it could import and use types.Status for constants to get compile-time type checking. Current code: if left == closed || right == closed. Could be: if left == string(types.StatusClosed). This is low priority since string comparison works correctly. Files: internal/merge/merge.go:44, 488, 501-521","status":"open","priority":4,"issue_type":"task","created_at":"2025-12-05T16:37:10.690424-08:00","updated_at":"2025-12-05T16:37:10.690424-08:00"} -{"id":"bd-s2t","title":"wish: a 'continue' or similar cmd/flag which means alter last issue","description":"so many time I create an issue and then have another thought: 'oh, before I did X and it crashed there was ZZZ happening' or 'actually that is P4 not P2'. It would be nice if when `bd {cmd}` is used without a {title} or {id} it just adds or updates the most recently touched issue.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-08T06:46:37.529160416-07:00","updated_at":"2025-12-08T06:46:37.529160416-07:00"} -{"id":"bd-lsv4","title":"GH#444: Fix inconsistent status naming in_progress vs in-progress","description":"Documentation uses in-progress (hyphen) but code expects in_progress (underscore). Update all docs to use canonical in_progress. See GitHub issue #444.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:14.349425-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-a15d","title":"Add test files for internal/storage","description":"The internal/storage package has no test files at all. This package provides the storage interface abstraction.\n\nCurrent coverage: N/A (no test files)\nTarget: Add basic interface tests","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:11.363017-08:00","updated_at":"2025-12-13T21:01:20.925779-08:00"} +{"id":"bd-aay","title":"Warn on invalid depends_on references in workflow templates","description":"workflow.go:780-781 silently skips invalid dependency names. Should log a warning when a depends_on reference doesn't match any task ID in the template.","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T22:23:04.325253-08:00","updated_at":"2025-12-17T22:34:07.309495-08:00","closed_at":"2025-12-17T22:34:07.309495-08:00"} +{"id":"bd-abjw","title":"Consider consolidating config.yaml parsing into shared utility","description":"Multiple places parse config.yaml with custom structs:\n\n1. **autoimport.go:148** - `localConfig{SyncBranch}`\n2. **main.go:310** - strings.Contains for no-db (fragile, see bd-r6k2)\n3. **doctor.go:863** - strings.Contains for no-db (fragile, see bd-r6k2)\n4. **internal/config/config.go** - Uses viper (but caches at startup, problematic for tests)\n\nConsider creating a shared utility in `internal/configfile/` or extending the viper config:\n\n```go\n// internal/configfile/yaml.go\ntype YAMLConfig struct {\n SyncBranch string `yaml:\"sync-branch\"`\n NoDb bool `yaml:\"no-db\"`\n IssuePrefix string `yaml:\"issue-prefix\"`\n Author string `yaml:\"author\"`\n}\n\nfunc LoadYAML(beadsDir string) (*YAMLConfig, error) {\n // Parse config.yaml with proper YAML library\n}\n```\n\nBenefits:\n- Single source of truth for config.yaml structure\n- Proper YAML parsing everywhere\n- Easier to add new config fields\n\nTrade-off: May add complexity for simple one-off reads.","status":"open","priority":4,"issue_type":"task","created_at":"2025-12-07T02:03:26.067311-08:00","updated_at":"2025-12-07T02:03:26.067311-08:00"} +{"id":"bd-adoe","title":"Add --hard flag to bd cleanup to permanently cull tombstones before cutoff date","description":"Currently tombstones persist for 30 days before cleanup prunes them. Need an official way to force-cull tombstones earlier than the default TTL, for scenarios like cleaning house after extended absence where resurrection from old clones is not a concern. Proposed: bd cleanup --hard --older-than N to bypass the 30-day tombstone TTL.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:17:31.064914-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} +{"id":"bd-aec5439f","title":"Update LINTING.md with current baseline","description":"After cleanup, document the remaining acceptable baseline in LINTING.md so we can track regression.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-27T18:53:10.38679-07:00","updated_at":"2025-12-17T22:58:34.564854-08:00","closed_at":"2025-12-17T22:58:34.564854-08:00","close_reason":"Closed"} +{"id":"bd-ao0s","title":"bd graph crashes with --no-daemon on closed issues","description":"The `bd graph` command panics with nil pointer dereference when using `--no-daemon` flag on an issue with closed children.\n\n**Reproduction:**\n```bash\nbd graph bd-qqc --no-daemon\n# panic: runtime error: invalid memory address or nil pointer dereference\n# in main.computeDependencyCounts\n```\n\n**Stack trace:**\n```\npanic: runtime error: invalid memory address or nil pointer dereference\n[signal SIGSEGV: segmentation violation code=0x2 addr=0x20 pc=0x1010bdfb0]\n\ngoroutine 1 [running]:\nmain.computeDependencyCounts(...)\n /Users/stevey/gt/beads/crew/emma/cmd/bd/graph.go:428\nmain.renderGraph(0x1400033bb80, 0x0)\n /Users/stevey/gt/beads/crew/emma/cmd/bd/graph.go:307 +0x300\n```\n\n**Location:** cmd/bd/graph.go:428 - computeDependencyCounts() not handling nil case","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-18T22:57:36.972585-08:00","updated_at":"2025-12-18T22:57:36.972585-08:00"} +{"id":"bd-au0","title":"Command Set Standardization \u0026 Flag Consistency","description":"Comprehensive improvements to bd command set based on 2025 audit findings.\n\n## Background\nSee docs/command-audit-2025.md for detailed analysis.\n\n## Goals\n1. Standardize flag naming and behavior across all commands\n2. Add missing flags for feature parity\n3. Fix naming confusion\n4. Improve consistency in JSON output\n\n## Success Criteria\n- All mutating commands support --dry-run (no --preview variants)\n- bd update supports label operations\n- bd search has filter parity with bd list\n- Priority flags accept both int and P0-P4 format everywhere\n- JSON output is consistent across all commands","status":"open","priority":2,"issue_type":"epic","created_at":"2025-11-21T21:05:55.672749-05:00","updated_at":"2025-11-21T21:05:55.672749-05:00"} +{"id":"bd-au0.10","title":"Add global verbosity flags (--verbose, --quiet)","description":"Add consistent verbosity controls across all commands.\n\n**Current state:**\n- bd init has --quiet flag\n- No other commands have verbosity controls\n- Debug output controlled by BD_VERBOSE env var\n\n**Proposal:**\nAdd persistent flags:\n- --verbose / -v: Enable debug output\n- --quiet / -q: Suppress non-essential output\n\n**Implementation:**\n- Add to rootCmd.PersistentFlags()\n- Replace BD_VERBOSE checks with flag checks\n- Standardize output levels:\n * Quiet: Errors only\n * Normal: Errors + success messages\n * Verbose: Errors + success + debug info\n\n**Files to modify:**\n- cmd/bd/main.go (add flags)\n- internal/debug/debug.go (respect flags)\n- Update all commands to respect quiet mode\n\n**Testing:**\n- Verify --verbose shows debug output\n- Verify --quiet suppresses normal output\n- Ensure errors always show regardless of mode","status":"open","priority":3,"issue_type":"task","created_at":"2025-11-21T21:08:21.600209-05:00","updated_at":"2025-11-21T21:08:21.600209-05:00","dependencies":[{"issue_id":"bd-au0.10","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:08:21.602557-05:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-au0.5","title":"Add date and priority filters to bd search","description":"Add filter parity with bd list for consistent querying.\n\n**Missing filters to add:**\n- --priority, --priority-min, --priority-max\n- --created-after, --created-before\n- --updated-after, --updated-before\n- --closed-after, --closed-before\n- --empty-description, --no-assignee, --no-labels\n- --desc-contains, --notes-contains\n\n**Files to modify:**\n- cmd/bd/search.go\n- internal/rpc/protocol.go (SearchArgs)\n- internal/storage/storage.go (Search method)\n\n**Testing:**\n- All filter combinations\n- Date format parsing\n- Daemon and direct mode","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-21T21:07:05.496726-05:00","updated_at":"2025-11-21T21:07:05.496726-05:00","dependencies":[{"issue_id":"bd-au0.5","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:05.497762-05:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-au0.6","title":"Add comprehensive filters to bd export","description":"Enhance bd export with filtering options for selective exports.\n\n**Currently only has:**\n- --status\n\n**Add filters:**\n- --label, --label-any\n- --assignee\n- --type\n- --priority, --priority-min, --priority-max\n- --created-after, --created-before\n- --updated-after, --updated-before\n\n**Use case:**\n- Export only open issues: bd export --status open\n- Export high-priority bugs: bd export --type bug --priority-max 1\n- Export recent issues: bd export --created-after 2025-01-01\n\n**Files to modify:**\n- cmd/bd/export.go\n- Reuse filter logic from list.go","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-21T21:07:19.431307-05:00","updated_at":"2025-11-21T21:07:19.431307-05:00","dependencies":[{"issue_id":"bd-au0.6","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:19.432983-05:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-au0.7","title":"Audit and standardize JSON output across all commands","description":"Ensure consistent JSON format and error handling when --json flag is used.\n\n**Scope:**\n1. Verify all commands respect --json flag\n2. Standardize success response format\n3. Standardize error response format\n4. Document JSON schemas\n\n**Commands to audit:**\n- Core CRUD: create, update, delete, show, list, search āœ“\n- Queries: ready, blocked, stale, count, stats, status\n- Deps: dep add/remove/tree/cycles\n- Labels: label commands\n- Comments: comments add/list/delete\n- Epics: epic status/close-eligible\n- Export/import: already support --json āœ“\n\n**Testing:**\n- Success cases return valid JSON\n- Error cases return valid JSON (not plain text)\n- Consistent field naming (snake_case vs camelCase)\n- Array vs object wrapping consistency","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-21T21:07:35.304424-05:00","updated_at":"2025-11-21T21:07:35.304424-05:00","dependencies":[{"issue_id":"bd-au0.7","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:35.305663-05:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-au0.8","title":"Improve clean vs cleanup command naming/documentation","description":"Clarify the difference between bd clean and bd cleanup to reduce user confusion.\n\n**Current state:**\n- bd clean: Remove temporary artifacts (.beads/bd.sock, logs, etc.)\n- bd cleanup: Delete old closed issues from database\n\n**Options:**\n1. Rename for clarity:\n - bd clean ā†’ bd clean-temp\n - bd cleanup ā†’ bd cleanup-issues\n \n2. Keep names but improve help text and documentation\n\n3. Add prominent warnings in help output\n\n**Preferred approach:** Option 2 (improve documentation)\n- Update short/long descriptions in commands\n- Add examples to help text\n- Update README.md\n- Add cross-references in help output\n\n**Files to modify:**\n- cmd/bd/clean.go\n- cmd/bd/cleanup.go\n- README.md or ADVANCED.md","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-21T21:07:49.960534-05:00","updated_at":"2025-11-21T21:07:49.960534-05:00","dependencies":[{"issue_id":"bd-au0.8","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:49.962743-05:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-au0.9","title":"Review and document rarely-used commands","description":"Document use cases or consider deprecation for infrequently-used commands.\n\n**Commands to review:**\n1. bd rename-prefix - How often is this used? Document use cases\n2. bd detect-pollution - Consider integrating into bd validate\n3. bd migrate-hash-ids - One-time migration, keep but document as legacy\n\n**For each command:**\n- Document typical use cases\n- Add examples to help text\n- Consider if it should be a subcommand instead\n- Add deprecation warning if appropriate\n\n**Not changing:**\n- duplicates āœ“ (useful for data quality)\n- repair-deps āœ“ (useful for fixing broken refs)\n- restore āœ“ (critical for compacted issues)\n- compact āœ“ (performance feature)\n\n**Deliverable:**\n- Updated help text\n- Documentation in ADVANCED.md\n- Deprecation plan if needed","status":"open","priority":3,"issue_type":"task","created_at":"2025-11-21T21:08:05.588275-05:00","updated_at":"2025-11-21T21:08:05.588275-05:00","dependencies":[{"issue_id":"bd-au0.9","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:08:05.59003-05:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-aydr","title":"Add bd reset command for clean slate restart","description":"Implement a `bd reset` command to reset beads to a clean starting state.\n\n## Context\nGitHub issue #479 - users sometimes get beads into an invalid state after updates, and there's no clean way to start fresh. The git backup/restore mechanism that protects against accidental deletion also makes it hard to intentionally reset.\n\n## Design\n\n### Command Interface\n```\nbd reset [--hard] [--force] [--backup] [--dry-run] [--no-init]\n```\n\n| Flag | Effect |\n|------|--------|\n| `--hard` | Also remove from git index and commit |\n| `--force` | Skip confirmation prompt |\n| `--backup` | Create `.beads-backup-{timestamp}/` first |\n| `--dry-run` | Preview what would happen |\n| `--no-init` | Don't re-initialize after clearing |\n\n### Reset Levels\n1. **Soft Reset (default)** - Kill daemons, clear .beads/, re-init. Git history unchanged.\n2. **Hard Reset (`--hard`)** - Also git rm and commit the removal, then commit fresh state.\n\n### Implementation Flow\n1. Validate .beads/ exists\n2. If not --force: show impact summary, prompt confirmation\n3. If --backup: copy .beads/ to .beads-backup-{timestamp}/\n4. Kill daemons\n5. If --hard: git rm + commit\n6. rm -rf .beads/*\n7. If not --no-init: bd init (and git add+commit if --hard)\n8. Print summary\n\n### Safety Mechanisms\n- Confirmation prompt (skip with --force)\n- Impact summary (issue/tombstone counts)\n- Backup option\n- Dry-run preview\n- Git dirty check warning\n\n### Code Structure\n- `cmd/bd/reset.go` - CLI command\n- `internal/reset/` - Core logic package","status":"closed","priority":2,"issue_type":"epic","created_at":"2025-12-13T08:44:01.38379+11:00","updated_at":"2025-12-13T06:24:29.561294-08:00","closed_at":"2025-12-13T10:18:19.965287+11:00"} +{"id":"bd-aydr.1","title":"Implement core reset package (internal/reset)","description":"Create the core reset logic in internal/reset/ package.\n\n## Responsibilities\n- ResetOptions struct with all flag options\n- CountImpact() - count issues/tombstones that will be deleted\n- ValidateState() - check .beads/ exists, check git dirty state\n- ExecuteReset() - main reset logic (without CLI concerns)\n- Integrate with daemon killall\n\n## Interface Design\n```go\ntype ResetOptions struct {\n Hard bool // Include git operations (git rm, commit)\n Backup bool // Create backup before reset\n DryRun bool // Preview only, don't execute\n SkipInit bool // Don't re-initialize after reset\n}\n\ntype ResetResult struct {\n IssuesDeleted int\n TombstonesDeleted int\n BackupPath string // if backup was created\n DaemonsKilled int\n}\n\ntype ImpactSummary struct {\n IssueCount int\n OpenCount int\n ClosedCount int\n TombstoneCount int\n HasUncommitted bool // git dirty state\n}\n\nfunc Reset(opts ResetOptions) (*ResetResult, error)\nfunc CountImpact() (*ImpactSummary, error)\nfunc ValidateState() error\n```\n\n## IMPORTANT: CLI vs Core Separation\n- `Force` (skip confirmation) is NOT in ResetOptions - that's a CLI concern\n- Core always executes when called; CLI decides whether to prompt first\n- Keep CLI-agnostic: no prompts, no colored output, no user interaction\n- Return errors for CLI to handle with user-friendly messages\n- Unit testable in isolation\n\n## Dependencies\n- Uses daemon.KillAllDaemons() from internal/daemon/\n- Calls bd init logic after reset (unless SkipInit)","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:50.145364+11:00","updated_at":"2025-12-13T10:13:32.610253+11:00","closed_at":"2025-12-13T09:20:06.184893+11:00","dependencies":[{"issue_id":"bd-aydr.1","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:50.145775+11:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-aydr.2","title":"Implement backup functionality for reset","description":"Add backup capability that can be used by reset command.\n\n## Functionality\n- Copy .beads/ to .beads-backup-{timestamp}/\n- Timestamp format: YYYYMMDD-HHMMSS\n- Preserve file permissions\n- Return backup path for user feedback\n\n## Location\n`internal/reset/backup.go` - keep with reset package for now (YAGNI)\n\n## Interface\n```go\nfunc CreateBackup(beadsDir string) (backupPath string, err error)\n```\n\n## Notes\n- Simple recursive file copy, no compression needed\n- Error if backup dir already exists (unlikely with timestamp)\n- Backup directories SHOULD be gitignored\n- Add `.beads-backup-*/` pattern to .beads/.gitignore template in doctor package\n- Consider: ListBackups() for future `bd backup list` command (not for this PR)","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:51.306103+11:00","updated_at":"2025-12-13T10:13:32.610819+11:00","closed_at":"2025-12-13T09:20:20.590488+11:00","dependencies":[{"issue_id":"bd-aydr.2","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:51.306474+11:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-aydr.3","title":"Add git operations for --hard reset","description":"Implement git integration for hard reset mode.\n\n## Operations Needed\n1. `git rm -rf .beads/*.jsonl` - remove data files from index\n2. `git commit -m 'beads: reset to clean state'` - commit removal\n3. After re-init: `git add .beads/` and commit fresh state\n\n## Edge Cases to Handle\n- Uncommitted changes in .beads/ - warn or error\n- Detached HEAD state - warn, maybe block\n- Git not initialized - skip git ops, warn\n- Git operations fail mid-way - clear error messaging\n\n## Interface\n```go\ntype GitState struct {\n IsRepo bool\n IsDirty bool // uncommitted changes in .beads/\n IsDetached bool // detached HEAD\n Branch string // current branch name\n}\n\nfunc CheckGitState(beadsDir string) (*GitState, error)\nfunc GitRemoveBeads(beadsDir string) error\nfunc GitCommitReset(message string) error\nfunc GitAddAndCommit(beadsDir, message string) error\n```\n\n## Location\n`internal/reset/git.go` - keep with reset package for now\n\nNote: Codebase has no central git package. internal/compact/git.go is compact-specific.\nFuture refactoring could extract shared git utilities, but YAGNI for now.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:52.798312+11:00","updated_at":"2025-12-13T10:13:32.611131+11:00","closed_at":"2025-12-13T09:17:40.785927+11:00","dependencies":[{"issue_id":"bd-aydr.3","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:52.798715+11:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-aydr.4","title":"Implement CLI command (cmd/bd/reset.go)","description":"Wire up the reset command with Cobra CLI.\n\n## Responsibilities\n- Define command and all flags\n- User confirmation prompt (unless --force)\n- Display impact summary before confirmation\n- Colored output and progress indicators\n- Call core reset package\n- Handle errors with user-friendly messages\n- Register command with rootCmd in init()\n\n## Flags\n```go\n--hard bool \"Also remove from git and commit\"\n--force bool \"Skip confirmation prompt\"\n--backup bool \"Create backup before reset\"\n--dry-run bool \"Preview what would happen\"\n--skip-init bool \"Do not re-initialize after reset\"\n--verbose bool \"Show detailed progress output\"\n```\n\n## Output Format\n```\nāš ļø This will reset beads to a clean state.\n\nWill be deleted:\n ā€¢ 47 issues (23 open, 24 closed)\n ā€¢ 12 tombstones\n\nContinue? [y/N] y\n\nā†’ Stopping daemons... āœ“\nā†’ Removing .beads/... āœ“\nā†’ Initializing fresh... āœ“\n\nāœ“ Reset complete. Run 'bd onboard' to set up hooks.\n```\n\n## Implementation Notes\n- Confirmation logic lives HERE, not in core package\n- Use color package (github.com/fatih/color) for output\n- Follow patterns from other commands (init.go, doctor.go)\n- Add to rootCmd in init() function\n\n## File Location\n`cmd/bd/reset.go`","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:54.318854+11:00","updated_at":"2025-12-13T10:13:32.611434+11:00","closed_at":"2025-12-13T09:59:41.72638+11:00","dependencies":[{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:54.319237+11:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr.1","type":"blocks","created_at":"2025-12-13T08:45:09.762138+11:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr.2","type":"blocks","created_at":"2025-12-13T08:45:09.817854+11:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr.3","type":"blocks","created_at":"2025-12-13T08:45:09.883658+11:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-aydr.5","title":"Enhance bd doctor to suggest reset for broken states","description":"Update bd doctor to detect severely broken states and suggest reset.\n\n## Detection Criteria\nSuggest reset when:\n- Multiple unfixable errors detected\n- Corrupted JSONL that can't be repaired\n- Schema version mismatch that can't be migrated\n- Daemon state inconsistent and unkillable\n\n## Implementation\nAdd to doctor's check/fix flow:\n```go\nif unfixableErrors \u003e threshold {\n suggest('State may be too broken to fix. Consider: bd reset')\n}\n```\n\n## Output Example\n```\nāœ— Found 5 unfixable errors\n \n Your beads state may be too corrupted to repair.\n Consider running 'bd reset' to start fresh.\n (Use 'bd reset --backup' to save current state first)\n```\n\n## Notes\n- Don't auto-run reset, just suggest\n- This is lower priority, can be done in parallel with main work","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-13T08:44:55.591986+11:00","updated_at":"2025-12-13T06:24:29.561624-08:00","closed_at":"2025-12-13T10:17:23.4522+11:00","dependencies":[{"issue_id":"bd-aydr.5","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:55.59239+11:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-aydr.6","title":"Add unit tests for reset package","description":"Comprehensive unit tests for internal/reset package.\n\n## Test Cases\n\n### ValidateState tests\n- .beads/ exists ā†’ success\n- .beads/ missing ā†’ appropriate error\n- git dirty state detection\n\n### CountImpact tests \n- Empty .beads/ ā†’ zero counts\n- With issues ā†’ correct count (open vs closed)\n- With tombstones ā†’ correct count\n- Returns HasUncommitted correctly\n\n### Backup tests\n- Creates backup with correct timestamp format\n- Preserves all files and permissions\n- Returns correct path\n- Handles missing .beads/ gracefully\n- Errors on pre-existing backup dir\n\n### Git operation tests\n- CheckGitState detects dirty, detached, not-a-repo\n- GitRemoveBeads removes correct files\n- GitCommitReset creates commit with message\n- Operations skip gracefully when not in git repo\n\n### Reset tests (with mocks/temp dirs)\n- Soft reset removes files, calls init\n- Hard reset includes git operations\n- Dry run doesn't modify anything\n- SkipInit flag prevents re-initialization\n- Daemon killall is called\n- Backup is created when requested\n\n## Approach\n- Can start with interface definitions (TDD style)\n- Use testify for assertions\n- Create temp directories for isolation\n- Mock git operations where needed\n- Test completion depends on implementation tasks\n\n## File Location\n`internal/reset/reset_test.go`\n`internal/reset/backup_test.go`\n`internal/reset/git_test.go`","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:57.01739+11:00","updated_at":"2025-12-13T10:13:32.611698+11:00","closed_at":"2025-12-13T09:59:20.820314+11:00","dependencies":[{"issue_id":"bd-aydr.6","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:57.017813+11:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-aydr.7","title":"Add integration tests for bd reset command","description":"End-to-end integration tests for the reset command.\n\n## Test Scenarios\n\n### Basic reset\n1. Init beads, create some issues\n2. Run bd reset --force\n3. Verify .beads/ is fresh, issues gone\n\n### Hard reset\n1. Init beads, create issues, commit\n2. Run bd reset --hard --force \n3. Verify git history has reset commits\n\n### Backup functionality\n1. Init beads, create issues\n2. Run bd reset --backup --force\n3. Verify backup exists with correct contents\n4. Verify main .beads/ is reset\n\n### Dry run\n1. Init beads, create issues\n2. Run bd reset --dry-run\n3. Verify nothing changed\n\n### Confirmation prompt\n1. Init beads\n2. Run bd reset (no --force)\n3. Verify prompts for confirmation\n4. Test both y and n responses\n\n## Location\ntests/integration/reset_test.go or similar","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:58.479282+11:00","updated_at":"2025-12-13T06:24:29.561908-08:00","closed_at":"2025-12-13T10:15:59.221637+11:00","dependencies":[{"issue_id":"bd-aydr.7","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:58.479686+11:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-aydr.7","depends_on_id":"bd-aydr.4","type":"blocks","created_at":"2025-12-13T08:45:11.15972+11:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-aydr.8","title":"Respond to GitHub issue #479 with solution","description":"Once bd reset is implemented and released, respond to GitHub issue #479.\n\n## Response should include\n- Announce the new bd reset command\n- Show basic usage examples\n- Link to any documentation\n- Thank the user for the feedback\n\n## Example response\n```\nThanks for raising this! We've added a `bd reset` command to handle this case.\n\nUsage:\n- `bd reset` - Reset to clean state (prompts for confirmation)\n- `bd reset --backup` - Create backup first\n- `bd reset --hard` - Also clean up git history\n\nThis is available in version X.Y.Z.\n```\n\n## Notes\n- Wait until feature is merged and released\n- Consider if issue should be closed or left for user confirmation","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-13T08:45:00.112351+11:00","updated_at":"2025-12-13T06:24:29.562177-08:00","closed_at":"2025-12-13T10:18:06.646796+11:00","dependencies":[{"issue_id":"bd-aydr.8","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:45:00.112732+11:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-aydr.8","depends_on_id":"bd-aydr.7","type":"blocks","created_at":"2025-12-13T08:45:12.640243+11:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-aydr.9","title":"Add .beads-backup-* pattern to gitignore template","description":"Update the gitignore template in doctor package to include backup directories.\n\n## Change\nAdd `.beads-backup-*/` to the GitignoreTemplate in `cmd/bd/doctor/gitignore.go`\n\n## Why\nBackup directories created by `bd reset --backup` should not be committed to git.\nThey are local-only recovery tools.\n\n## File\n`cmd/bd/doctor/gitignore.go` - look for GitignoreTemplate constant","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-13T08:49:42.453483+11:00","updated_at":"2025-12-13T09:16:44.201889+11:00","closed_at":"2025-12-13T09:16:44.201889+11:00","dependencies":[{"issue_id":"bd-aydr.9","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:49:42.453886+11:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-b3og","title":"Fix TestImportBugIntegration deadlock in importer_test.go","description":"Code health review found internal/importer/importer_test.go has TestImportBugIntegration skipped with:\n\nTODO: Test hangs due to database deadlock - needs investigation\n\nThis indicates a potential unresolved concurrency issue in the importer. The test has been skipped for an unknown duration.\n\nFix: Investigate the deadlock, fix the underlying issue, and re-enable the test.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T18:17:22.103838-08:00","updated_at":"2025-12-17T23:13:40.529671-08:00","closed_at":"2025-12-17T17:25:26.645901-08:00","dependencies":[{"issue_id":"bd-b3og","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.740642-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-b6xo","title":"Remove or fix ClearDirtyIssues() - race condition risk (bd-52)","description":"Code health review found internal/storage/sqlite/dirty.go still exposes old ClearDirtyIssues() method (lines 103-108) which clears ALL dirty issues without checking what was actually exported.\n\nData loss risk: If export fails after some issues written to JSONL but before ClearDirtyIssues called, changes to remaining dirty issues will be lost.\n\nThe safer ClearDirtyIssuesByID() (lines 113-132) exists and clears only exported issues.\n\nFix: Either remove old method or mark it deprecated and ensure no code paths use it.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T18:17:20.534625-08:00","updated_at":"2025-12-17T23:13:40.530703-08:00","closed_at":"2025-12-17T18:59:18.693791-08:00","dependencies":[{"issue_id":"bd-b6xo","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.633738-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-bgm","title":"Fix unparam unused parameter in cmd/bd/doctor.go:1879","description":"Linting issue: checkGitHooks - path is unused (unparam) at cmd/bd/doctor.go:1879:20. Error: func checkGitHooks(path string) doctorCheck {","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:25.270293252-07:00","updated_at":"2025-12-17T23:13:40.532991-08:00","closed_at":"2025-12-17T16:46:11.026693-08:00"} +{"id":"bd-bgr","title":"Test stdin 2","description":"Description from stdin test\n","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T17:28:05.41434-08:00","updated_at":"2025-12-17T17:28:33.833288-08:00","closed_at":"2025-12-17T17:28:33.833288-08:00"} +{"id":"bd-bw6","title":"Fix G104 errors unhandled in internal/storage/sqlite/queries.go:1181","description":"Linting issue: G104: Errors unhandled (gosec) at internal/storage/sqlite/queries.go:1181:4. Error: rows.Close()","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:09.008444133-07:00","updated_at":"2025-12-17T23:13:40.536627-08:00","closed_at":"2025-12-17T16:46:11.029355-08:00"} +{"id":"bd-bwk2","title":"Centralize error handling patterns in storage layer","description":"80+ instances of inconsistent error handling across sqlite.go with mix of %w, %v, and no wrapping.\n\nLocation: internal/storage/sqlite/sqlite.go (throughout)\n\nProblem:\n- Some use fmt.Errorf(\"op failed: %w\", err) - correct wrapping\n- Some use fmt.Errorf(\"op failed: %v\", err) - loses error chain\n- Some return err directly - no context\n- Hard to debug production issues\n- Can't distinguish error types\n\nSolution: Create internal/storage/sqlite/errors.go:\n- Define sentinel errors (ErrNotFound, ErrInvalidID, etc.)\n- Create wrapDBError(op string, err error) helper\n- Convert sql.ErrNoRows to ErrNotFound\n- Always wrap with operation context\n\nImpact: Lost error context; inconsistent messages; hard to debug\n\nEffort: 5-7 hours","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-16T14:51:54.974909-08:00","updated_at":"2025-11-16T14:51:54.974909-08:00"} +{"id":"bd-bxha","title":"Default to YES for git hooks and merge driver installation","description":"Currently bd init prompts user to install git hooks and merge driver, but setup is incomplete if user declines. Change to install by default unless --skip-hooks or --skip-merge-driver flags are passed. Better safe defaults. If installation fails, warn user and suggest bd doctor --fix.","status":"open","priority":1,"issue_type":"feature","created_at":"2025-11-21T23:16:10.172238-08:00","updated_at":"2025-11-21T23:16:28.369137-08:00","dependencies":[{"issue_id":"bd-bxha","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:10.173034-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-by0d","title":"Work on beads-ldv: Fix bd graph crashes with nil pointer ...","description":"Work on beads-ldv: Fix bd graph crashes with nil pointer dereference (GH#657). Fix nil pointer in computeDependencyCounts at graph.go:428. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:27.829359-08:00","updated_at":"2025-12-20T00:26:12.607018-08:00","closed_at":"2025-12-19T23:20:49.038441-08:00"} +{"id":"bd-c2xs","title":"Exclude pinned issues from bd blocked","description":"Update bd blocked to exclude pinned issues. Pinned issues are context markers and should not appear in the blocked work list.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:44.684242-08:00","updated_at":"2025-12-18T23:33:44.684242-08:00","dependencies":[{"issue_id":"bd-c2xs","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.521323-08:00","created_by":"daemon"},{"issue_id":"bd-c2xs","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.736681-08:00","created_by":"daemon"}]} +{"id":"bd-c3u","title":"Review PR #512: clarify bd ready docs","description":"Review and merge PR #512 from aspiers. This PR clarifies what bd ready does after git pull in README.md. Simple 1-line change. URL: https://github.com/anthropics/beads/pull/512","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:15:13.405161+11:00","updated_at":"2025-12-13T07:07:29.641265-08:00","closed_at":"2025-12-13T07:07:29.641265-08:00"} +{"id":"bd-c83r","title":"Prevent multiple daemons from running on the same repo","description":"Multiple bd daemons running on the same repo clone causes race conditions and data corruption risks.\n\n**Problem:**\n- Nothing prevents spawning multiple daemons for the same repository\n- Multiple daemons watching the same files can conflict during sync operations\n- Observed: 4 daemons running simultaneously caused sync race condition\n\n**Solution:**\nImplement daemon singleton enforcement per repo:\n1. Use a lock file (e.g., .beads/.daemon.lock) with PID\n2. On daemon start, check if lock exists and process is alive\n3. If stale lock (dead PID), clean up and acquire lock\n4. If active daemon exists, either:\n - Exit with message 'daemon already running (PID xxx)'\n - Or offer --replace flag to kill existing and take over\n5. Release lock on graceful shutdown\n\n**Edge cases to handle:**\n- Daemon crashes without releasing lock (stale PID detection)\n- Multiple repos in same directory tree (each repo gets own lock)\n- Race between two daemons starting simultaneously (atomic lock acquisition)","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-13T06:37:23.377131-08:00","updated_at":"2025-12-16T01:14:49.50347-08:00","closed_at":"2025-12-14T17:34:14.990077-08:00"} +{"id":"bd-cb64c226.1","title":"Performance Validation","description":"Confirm no performance regression from cache removal","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T10:50:15.126019-07:00","updated_at":"2025-12-17T23:18:29.108883-08:00","close_reason":"Closed","deleted_at":"2025-12-17T23:18:29.108883-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-cb64c226.10","title":"Delete server_cache_storage.go","description":"Remove the entire cache implementation file (~286 lines)","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:38.729299-07:00","updated_at":"2025-12-17T23:18:29.110716-08:00","close_reason":"Closed","deleted_at":"2025-12-17T23:18:29.110716-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-cb64c226.12","title":"Remove Storage Cache from Server Struct","description":"Eliminate cache fields and use s.storage directly","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:25.474412-07:00","updated_at":"2025-12-17T23:18:29.111039-08:00","close_reason":"Closed","deleted_at":"2025-12-17T23:18:29.111039-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-cb64c226.13","title":"Audit Current Cache Usage","description":"**Summary:** Comprehensive audit of storage cache usage revealed minimal dependency across server components, with most calls following a consistent pattern. Investigation confirmed cache was largely unnecessary in single-repository daemon architecture.\n\n**Key Decisions:** \n- Remove all cache-related environment variables\n- Delete server struct cache management fields\n- Eliminate cache-specific test files\n- Deprecate req.Cwd routing logic\n\n**Resolution:** Cache system will be completely removed, simplifying server storage access and reducing unnecessary complexity with negligible performance impact.","notes":"AUDIT COMPLETE\n\ngetStorageForRequest() callers: 17 production + 11 test\n- server_issues_epics.go: 8 calls\n- server_labels_deps_comments.go: 4 calls \n- server_export_import_auto.go: 2 calls\n- server_compact.go: 2 calls\n- server_routing_validation_diagnostics.go: 1 call\n- server_eviction_test.go: 11 calls (DELETE entire file)\n\nPattern everywhere: store, err := s.getStorageForRequest(req) ā†’ store := s.storage\n\nreq.Cwd usage: Only for multi-repo routing. Local daemon always serves 1 repo, so routing is unused.\n\nMCP server: Uses separate daemons per repo (no req.Cwd usage found). NOT affected by cache removal.\n\nCache env vars to deprecate:\n- BEADS_DAEMON_MAX_CACHE_SIZE (used in server_core.go:63)\n- BEADS_DAEMON_CACHE_TTL (used in server_core.go:72)\n- BEADS_DAEMON_MEMORY_THRESHOLD_MB (used in server_cache_storage.go:47)\n\nServer struct fields to remove:\n- storageCache, cacheMu, maxCacheSize, cacheTTL, cleanupTicker, cacheHits, cacheMisses\n\nTests to delete:\n- server_eviction_test.go (entire file - 9 tests)\n- limits_test.go cache assertions\n\nSpecial consideration: ValidateDatabase endpoint uses findDatabaseForCwd() outside cache. Verify if used, then remove or inline.\n\nSafe to proceed with removal - cache always had 1 entry in local daemon model.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:19.3723-07:00","updated_at":"2025-12-17T23:18:29.111369-08:00","close_reason":"Closed","deleted_at":"2025-12-17T23:18:29.111369-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-cb64c226.6","title":"Verify MCP Server Compatibility","description":"Ensure MCP server works with cache-free daemon","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:56:03.241615-07:00","updated_at":"2025-12-17T23:18:29.109644-08:00","close_reason":"Closed","deleted_at":"2025-12-17T23:18:29.109644-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-cb64c226.8","title":"Update Metrics and Health Endpoints","description":"Remove cache-related metrics from health/metrics endpoints","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:49.212047-07:00","updated_at":"2025-12-17T23:18:29.110022-08:00","close_reason":"Closed","deleted_at":"2025-12-17T23:18:29.110022-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-cb64c226.9","title":"Remove Cache-Related Tests","description":"Delete or update tests that assume multi-repo caching","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:44.511897-07:00","updated_at":"2025-12-17T23:18:29.110385-08:00","close_reason":"Closed","deleted_at":"2025-12-17T23:18:29.110385-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-cbed9619.1","title":"Fix multi-round convergence for N-way collisions","description":"**Summary:** Multi-round collision resolution was identified as a critical issue preventing complete synchronization across distributed clones. The problem stemmed from incomplete final pulls that didn't fully propagate all changes between system instances.\n\n**Key Decisions:**\n- Implement multi-round sync mechanism\n- Ensure bounded convergence (ā‰¤N rounds)\n- Guarantee idempotent import without data loss\n\n**Resolution:** Developed a sync strategy that ensures all clones converge to the same complete set of issues, unblocking the bd-cbed9619 epic and improving distributed system reliability.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T21:22:21.486109-07:00","updated_at":"2025-12-17T23:18:29.111713-08:00","close_reason":"Closed","deleted_at":"2025-12-17T23:18:29.111713-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-cbed9619.2","title":"Implement content-first idempotent import","description":"**Summary:** Refactored issue import to be content-first and idempotent, ensuring consistent data synchronization across multiple import rounds by prioritizing content hash matching over ID-based updates.\n\n**Key Decisions:** \n- Implement content hash as primary matching mechanism\n- Create global collision resolution algorithm\n- Ensure importing same data multiple times results in no-op\n\n**Resolution:** The new import strategy guarantees predictable convergence across distributed systems, solving rename detection and collision handling while maintaining data integrity during multi-stage imports.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:38:25.671302-07:00","updated_at":"2025-12-17T23:18:29.112032-08:00","close_reason":"Closed","dependencies":[{"issue_id":"bd-cbed9619.2","depends_on_id":"bd-cbed9619.5","type":"blocks","created_at":"2025-10-28T18:39:28.360026-07:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-cbed9619.2","depends_on_id":"bd-cbed9619.4","type":"blocks","created_at":"2025-10-28T18:39:28.383624-07:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-cbed9619.2","depends_on_id":"bd-cbed9619.3","type":"blocks","created_at":"2025-10-28T18:39:28.407157-07:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-17T23:18:29.112032-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-cbed9619.3","title":"Implement global N-way collision resolution algorithm","description":"**Summary:** Replaced pairwise collision resolution with a global N-way algorithm that deterministically resolves issue ID conflicts across multiple clones. The new approach groups collisions, deduplicates by content hash, and assigns sequential IDs to ensure consistent synchronization.\n\n**Key Decisions:**\n- Use content hash for global, stable sorting\n- Group collisions by base ID\n- Assign sequential IDs based on sorted unique versions\n- Eliminate order-dependent remapping logic\n\n**Resolution:** Implemented ResolveNWayCollisions function that guarantees deterministic issue ID assignment across multiple synchronization scenarios, solving the core challenge of maintaining consistency in distributed systems with potential conflicts.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:37:42.85616-07:00","updated_at":"2025-12-17T23:18:29.112335-08:00","close_reason":"Closed","dependencies":[{"issue_id":"bd-cbed9619.3","depends_on_id":"bd-cbed9619.5","type":"blocks","created_at":"2025-10-28T18:39:28.30886-07:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-cbed9619.3","depends_on_id":"bd-cbed9619.4","type":"blocks","created_at":"2025-10-28T18:39:28.336312-07:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-17T23:18:29.112335-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-cbed9619.4","title":"Make DetectCollisions read-only (separate detection from modification)","description":"**Summary:** The project restructured the collision detection process in the database to separate read-only detection from state modification, eliminating race conditions and improving system reliability. This was achieved by introducing a two-phase approach: first detecting potential collisions, then applying resolution separately.\n\n**Key Decisions:**\n- Create read-only DetectCollisions method\n- Add RenameDetail to track potential issue renames\n- Implement atomic ApplyCollisionResolution function\n- Separate detection logic from database modification\n\n**Resolution:** The refactoring creates a more robust, composable collision handling mechanism that prevents partial failures and maintains database consistency during complex issue import scenarios.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:37:09.652326-07:00","updated_at":"2025-12-17T23:18:29.112637-08:00","close_reason":"Closed","dependencies":[{"issue_id":"bd-cbed9619.4","depends_on_id":"bd-cbed9619.5","type":"blocks","created_at":"2025-10-28T18:39:28.285653-07:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-17T23:18:29.112637-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-cbed9619.5","title":"Add content-addressable identity to Issue type","description":"**Summary:** Added content-addressable identity to Issue type by implementing a ContentHash field that generates a unique SHA256 fingerprint based on semantic issue content. This resolves issue identification challenges when multiple system instances create issues with identical IDs but different contents.\n\n**Key Decisions:**\n- Use SHA256 for content hashing\n- Hash excludes ID and timestamps\n- Compute hash automatically at creation/import time\n- Add database column for hash storage\n\n**Resolution:** Successfully implemented a deterministic content hashing mechanism that enables reliable issue identification across distributed systems, improving data integrity and collision detection.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:36:44.914967-07:00","updated_at":"2025-12-17T23:18:29.112933-08:00","close_reason":"Closed","deleted_at":"2025-12-17T23:18:29.112933-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-cils","title":"Work on beads-2nh: Fix gt spawn --issue to find issues in...","description":"Work on beads-2nh: Fix gt spawn --issue to find issues in rig's beads database. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:47.573854-08:00","updated_at":"2025-12-20T00:26:12.608015-08:00","closed_at":"2025-12-19T23:28:28.605343-08:00"} +{"id":"bd-crgr","title":"GH#517: Claude sets priority wrong on new install","description":"Claude uses 'medium/high/low' for priority instead of P0-P4. Update bd prime/onboard output to be clearer about priority syntax. See GitHub issue #517.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:34.803084-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-czss","title":"Update CHANGELOG.md with release notes","description":"Add meaningful release notes to CHANGELOG.md describing what changed in {{version}}","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:55:59.909641-08:00","updated_at":"2025-12-20T01:23:51.407302-08:00","closed_at":"2025-12-20T01:23:51.407302-08:00","close_reason":"Superseded by 0.30.7 release - CHANGELOG already updated","dependencies":[{"issue_id":"bd-czss","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:14.862724-08:00","created_by":"daemon"},{"issue_id":"bd-czss","depends_on_id":"bd-qkw9","type":"blocks","created_at":"2025-12-19T22:56:23.145894-08:00","created_by":"daemon"}]} +{"id":"bd-d148","title":"GH#483: Pre-commit hook fails unnecessarily when .beads removed","description":"Pre-commit hook fails on bd sync when .beads directory exists but user is on branch without beads. Should exit gracefully. See GitHub issue #483.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:40.049785-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-d3e5","title":"Test issue 2","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-14T11:21:13.878680387-07:00","updated_at":"2025-12-14T11:21:13.878680387-07:00","closed_at":"2025-12-14T00:32:13.890274-08:00"} +{"id":"bd-d73u","title":"Re: Thread Test 2","description":"Great! Thread is working well.","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:46.655093-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-d73u","depends_on_id":"bd-vpan","type":"replies-to","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} {"id":"bd-de6","title":"Fix FindBeadsDir to prioritize main repo .beads for worktrees","description":"The FindBeadsDir function should prioritize finding .beads in the main repository root when accessed from a worktree, rather than finding worktree-local .beads directories. This ensures proper sharing of the database across all worktrees.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-07T16:48:36.883117467-07:00","updated_at":"2025-12-07T16:48:36.883117467-07:00"} -{"id":"bd-czss","title":"Update CHANGELOG.md with release notes","description":"Add meaningful release notes to CHANGELOG.md describing what changed in {{version}}","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:55:59.909641-08:00","updated_at":"2025-12-20T01:23:51.407302-08:00","closed_at":"2025-12-20T01:23:51.407302-08:00","dependencies":[{"issue_id":"bd-czss","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:14.862724-08:00","created_by":"daemon"},{"issue_id":"bd-czss","depends_on_id":"bd-qkw9","type":"blocks","created_at":"2025-12-19T22:56:23.145894-08:00","created_by":"daemon"}]} -{"id":"bd-pbh.5","title":"Update .claude-plugin/marketplace.json to 0.30.4","description":"Update version field in .claude-plugin/marketplace.json:\n```json\n\"version\": \"0.30.4\"\n```\n\n\n```verify\njq -e '.plugins[0].version == \"0.30.4\"' .claude-plugin/marketplace.json\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.985619-08:00","updated_at":"2025-12-17T21:46:46.239122-08:00","closed_at":"2025-12-17T21:46:46.239122-08:00","dependencies":[{"issue_id":"bd-pbh.5","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.985942-08:00","created_by":"daemon"}]} -{"id":"bd-sh4c","title":"Improve test coverage for cmd/bd/setup (28.4% ā†’ 50%)","description":"The setup package has only 28.4% test coverage. Setup commands are critical for first-time user experience.\n\nCurrent coverage: 28.4%\nTarget coverage: 50%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:04.409346-08:00","updated_at":"2025-12-13T21:01:18.98833-08:00"} -{"id":"bd-x36g","title":"Thread Test 2","description":"Testing direct mode","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:16.470631-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} -{"id":"bd-pgcs","title":"Clean up orphaned child issues (bd-cb64c226.*, bd-cbed9619.*)","description":"## Problem\n\nEvery bd command shows warnings about 12 orphaned child issues:\n- bd-cb64c226.1, .6, .8, .9, .10, .12, .13\n- bd-cbed9619.1, .2, .3, .4, .5\n\nThese are hierarchical IDs (parent.child format) where the parent issues no longer exist.\n\n## Impact\n\n- Clutters output of every bd command\n- Confusing for users\n- Indicates incomplete cleanup of deleted parent issues\n\n## Proposed Solution\n\n1. Delete the orphaned issues since their parents no longer exist:\n ```bash\n bd delete bd-cb64c226.1 bd-cb64c226.6 bd-cb64c226.8 ...\n ```\n\n2. Or convert them to top-level issues if they contain useful content\n\n## Investigation Needed\n\n- What were the parent issues bd-cb64c226 and bd-cbed9619?\n- Why were they deleted without their children?\n- Should bd delete cascade to children automatically?","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T23:06:17.240571-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-rp4o","title":"Deleted issues resurrect during bd sync (tombstones not propagating)","description":"## Problem\n\nWhen issues are deleted with bd delete --force, they get deleted from the local DB but resurrect during the next bd sync.\n\n## Reproduction\n\n1. Observe orphan warnings (bd-cb64c226.*, bd-cbed9619.*)\n2. Delete them: bd delete bd-cb64c226.1 ... --force\n3. Run bd sync\n4. Orphan warnings reappear - issues were resurrected!\n\n## Root Cause Hypothesis\n\nThe sync branch workflow (beads-sync) has the old state before deletions. When bd sync pulls from beads-sync and copies JSONL to main, the deleted issues are re-imported.\n\nTombstones may not be properly:\n1. Written to beads-sync during export\n2. Propagated during pull/merge\n3. Honored during import\n\n## Related\n\n- bd-7b7h: chicken-and-egg sync.branch bug (same workflow)\n- bd-ncwo: ID-based fallback matching to prevent ghost resurrection\n\n## Files to Investigate\n\n- cmd/bd/sync.go (export/import flow)\n- internal/syncbranch/worktree.go (PullFromSyncBranch, copyJSONLToMainRepo)\n- internal/importer/ (tombstone handling)","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T23:09:43.072696-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-pdr2","title":"Consider backwards compatibility for ready() and list() return type change","description":"PR #481 changed the return types of `ready()` and `list()` from `list[Issue]` to `list[IssueMinimal] | CompactedResult`. This is a breaking change for MCP clients.\n\n## Impact Assessment\nBreaking change affects:\n- Any MCP client expecting `list[Issue]` from ready()\n- Any MCP client expecting `list[Issue]` from list()\n- Client code that accesses full Issue fields (description, design, acceptance_criteria, timestamps, dependencies, dependents)\n\n## Current Behavior\n- ready() returns `list[IssueMinimal] | CompactedResult`\n- list() returns `list[IssueMinimal] | CompactedResult`\n- show() still returns full `Issue` (good)\n\n## Considerations\n**Pros of current approach:**\n- Forces clients to use show() for full details (good for context efficiency)\n- Simple mental model (always use show for full data)\n- Documentation warns about this\n\n**Cons:**\n- Clients expecting list[Issue] will break\n- No graceful degradation option\n- No migration period\n\n## Potential Solutions\n1. Add optional parameter `full_details=false` to ready/list (would increase payload)\n2. Create separate tools: ready_minimal/list_minimal + ready_full/list_full\n3. Accept breaking change and document upgrade path (current approach)\n4. Version the MCP server and document migration guide\n\n## Recommendation\nCurrent approach (solution 3) is reasonable if:\n- Changelog clearly documents the breaking change\n- Migration guide provided to clients\n- Error handling is graceful for clients expecting specific fields","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:24:56.460465-08:00","updated_at":"2025-12-14T14:24:56.460465-08:00","dependencies":[{"issue_id":"bd-pdr2","depends_on_id":"bd-otf4","type":"discovered-from","created_at":"2025-12-14T14:24:56.461959-08:00","created_by":"stevey"}]} -{"id":"bd-n386","title":"Improve test coverage for internal/daemon (27.3% ā†’ 60%)","description":"The daemon package has only 27.3% test coverage. The daemon is critical for background operations and reliability.\n\nKey areas needing tests:\n- Daemon autostart logic\n- Socket handling\n- PID file management\n- Health checks\n\nCurrent coverage: 27.3%\nTarget coverage: 60%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:00.895238-08:00","updated_at":"2025-12-13T21:01:17.274438-08:00"} +{"id":"bd-dhza","title":"Reduce global state in cmd/bd/main.go (25+ variables)","description":"Code health review found main.go has 25+ global variables (lines 57-112):\n\n- dbPath, actor, store, jsonOutput, daemonClient, noDaemon\n- rootCtx, rootCancel, autoFlushEnabled\n- isDirty (marked 'USED BY LEGACY CODE')\n- needsFullExport (marked 'USED BY LEGACY CODE')\n- flushTimer (marked 'DEPRECATED')\n- flushMutex, storeMutex, storeActive\n- flushFailureCount, lastFlushError, flushManager\n- skipFinalFlush, autoImportEnabled\n- versionUpgradeDetected, previousVersion, upgradeAcknowledged\n\nImpact:\n- Hard to test individual commands\n- Race conditions possible\n- State leakage between commands\n\nFix: Move toward dependency injection. Remove deprecated variables. Consider cmd/bd/internal package.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:29.643293-08:00","updated_at":"2025-12-16T18:17:29.643293-08:00","dependencies":[{"issue_id":"bd-dhza","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.492112-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-dp4w","title":"Test message","description":"This is a test message body","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:11:58.467876-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} +{"id":"bd-dqu8","title":"Restart running daemons","description":"Kill and restart any running bd daemons to pick up new version: pkill -f 'bd daemon' \u0026\u0026 bd daemon --start","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T00:32:26.559311-08:00","updated_at":"2025-12-20T00:32:59.123766-08:00","closed_at":"2025-12-20T00:32:59.123766-08:00","close_reason":"Daemons restarted - now running 0.30.7","dependencies":[{"issue_id":"bd-dqu8","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-20T00:32:39.36213-08:00","created_by":"daemon"},{"issue_id":"bd-dqu8","depends_on_id":"bd-fgw3","type":"blocks","created_at":"2025-12-20T00:32:39.427846-08:00","created_by":"daemon"}]} +{"id":"bd-dsdh","title":"Document sync.branch 'always dirty' working tree behavior","description":"## Context\n\nWhen sync.branch is configured, the .beads/issues.jsonl file in main's working tree is ALWAYS dirty. This is by design:\n\n1. bd sync commits to beads-sync branch (via worktree)\n2. bd sync copies JSONL to main's working tree (so CLI commands work)\n3. This copy is NOT committed to main (to reduce commit noise)\n\nContributors who watch main branch history pushed for sync.branch to avoid constant beads commit noise. But users need to understand the trade-off.\n\n## Documentation Needed\n\nUpdate README.md sync.branch section with:\n\n1. **Clear explanation** of why .beads/ is always dirty on main\n2. **\"Be Zen about it\"** - this is expected, not a bug\n3. **Workflow options:**\n - Accept dirty state, use `bd sync --merge` periodically to snapshot to main\n - Or disable sync.branch if clean working tree is more important\n4. **Shell alias tip** to hide beads from git status:\n ```bash\n alias gs='git status -- \":!.beads/\"'\n ```\n5. **When to merge**: releases, milestones, or periodic snapshots\n\n## Related\n\n- bd-7b7h: Fix that allows bd sync --merge to work with dirty .beads/\n- bd-elqd: Investigation that identified this as expected behavior","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T23:16:12.253559-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-dsp","title":"Test stdin body-file","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T17:27:32.098806-08:00","updated_at":"2025-12-17T17:28:33.832749-08:00","closed_at":"2025-12-17T17:28:33.832749-08:00"} +{"id":"bd-dwh","title":"Implement or remove ExpectExit/ExpectStdout verification fields","description":"The Verification struct in internal/types/workflow.go has ExpectExit and ExpectStdout fields that are never used by workflowVerifyCmd. Either implement the functionality or remove the dead fields.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-17T22:23:02.708627-08:00","updated_at":"2025-12-17T22:34:07.300348-08:00","closed_at":"2025-12-17T22:34:07.300348-08:00"} +{"id":"bd-dyy","title":"Review PR #513: fix hooks install docs","description":"Review and merge PR #513 from aspiers. This PR fixes incorrect docs for how to install git hooks - updates README to use bd hooks install instead of removed install.sh. Simple 1-line change. URL: https://github.com/anthropics/beads/pull/513","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:15:14.838772+11:00","updated_at":"2025-12-13T07:07:19.718544-08:00","closed_at":"2025-12-13T07:07:19.718544-08:00"} +{"id":"bd-e1085716","title":"bd validate - Comprehensive health check","description":"Run all validation checks in one command.\n\nChecks:\n- Duplicates\n- Orphaned dependencies\n- Test pollution\n- Git conflicts\n\nSupports --fix-all for auto-repair.\n\nDepends on bd-cbed9619.1, bd-0dcea000, bd-31aab707, bd-9826b69a.\n\nFiles: cmd/bd/validate.go (new)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-10-29T23:05:13.980679-07:00","updated_at":"2025-12-17T22:58:34.562008-08:00","closed_at":"2025-12-17T22:58:34.562008-08:00","close_reason":"Closed"} +{"id":"bd-elqd","title":"Systematic bd sync stability investigation","description":"## Context\n\nbd sync has chronic instability issues that have persisted since inception:\n- issues.jsonl is always dirty after push\n- bd sync often creates messes requiring manual cleanup\n- Problems escalating despite accumulated bug fixes\n- Workarounds are getting increasingly draconian\n\n## Goal\n\nSystematically observe and diagnose bd sync failures rather than applying band-aid fixes.\n\n## Approach\n\n1. Start fresh session with latest binary (all fixes applied)\n2. Run bd sync and carefully observe what happens\n3. Document exact sequence of events when things go wrong\n4. File specific issues for each discrete problem identified\n5. Track the root causes, not just symptoms\n\n## Test Environment\n\n- Fresh clone or clean state\n- Latest bd binary with all bug fixes\n- Monitor both local and remote JSONL state\n- Check for timing issues, race conditions, merge conflicts\n\n## Success Criteria\n\n- Identify root causes of sync instability\n- Create actionable issues for each problem\n- Eventually achieve stable bd sync (no manual intervention needed)","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T22:57:25.35289-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-eyrh","title":"šŸ¤ HANDOFF: Review remaining beads PRs","description":"## Current State\nJust merged PR #653 (doctor refactor) and added tests to restore coverage.\n\n## Remaining Open PRs to Review\nRun `gh pr list --repo steveyegge/beads` to see current list. As of handoff:\n\n1. #655 - feat: Linear Integration (jblwilliams)\n2. #651 - feat(audit): agent audit trail (dchichkov)\n3. #648 - Stop init creating redundant @AGENTS.md (maphew)\n4. #646 - fix(unix): handle Statfs field types (jordanhubbard)\n5. #645 - feat: /plan-to-beads Claude Code command (petebytes)\n6. #642, #641, #640 - sync branch fixes (cpdata)\n\n## Review Checklist\n- Check CI status with `gh pr checks \u003cnum\u003e --repo steveyegge/beads`\n- Verify no .beads/ data leaking (we have a hook now)\n- Review code quality\n- Merge good ones, request changes on problematic ones\n\n## Notes\n- User wants us to be proactive about merging good PRs\n- Can add tests ourselves if coverage drops","status":"closed","priority":2,"issue_type":"message","created_at":"2025-12-19T17:44:34.149837-08:00","updated_at":"2025-12-19T23:20:44.79446-08:00","closed_at":"2025-12-19T17:53:20.386937-08:00","sender":"Steve Yegge","ephemeral":true} +{"id":"bd-eyto","title":"Time-dependent tests may be flaky near TTL boundary","description":"Several tombstone merge tests use time.Now() to create test data: time.Now().Add(-24 * time.Hour), time.Now().Add(-60 * 24 * time.Hour), etc. While these work reliably in practice (24h vs 30d TTL has large margin), they could theoretically be flaky if: 1) Tests run slowly, 2) System clock changes during test, 3) TTL constants change. Recommendation: Consider using a fixed reference time or time injection for deterministic tests. Lower priority since current margin is large. Files: internal/merge/merge_test.go:1337-1338, 1352-1353, 1548-1549, 1590-1591","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-05T16:37:02.348143-08:00","updated_at":"2025-12-05T16:37:02.348143-08:00"} +{"id":"bd-f3ll","title":"Merge: bd-ot0w","description":"branch: polecat/dementus\ntarget: main\nsource_issue: bd-ot0w\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:20:33.495772-08:00","updated_at":"2025-12-19T23:20:33.495772-08:00"} +{"id":"bd-f5cc","title":"Thread Test","description":"Testing the thread feature","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:01.244501-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-f5cc","depends_on_id":"bd-x36g","type":"supersedes","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} +{"id":"bd-fa2h","title":"šŸ¤ HANDOFF: v0.31.0 released, molecules discussion","description":"Session completed 0.31.0 release and had important molecules discussion.\n\n## Completed\n- v0.31.0 released (deferred status, audit trail, directory labels, etc.)\n- Fixed lint issues, hook version markers, codesigning\n- All CI green, artifacts verified\n\n## Filed Issues\n- bd-usro: Rename template instantiate ā†’ bd mol bond\n- bd-y8bj: Auto-detect identity for bd mail (P1 bug)\n- gt-975: Molecule execution support for polecats/crew\n- gt-976: Crew lifecycle support in Deacon\n\n## Key Insight\nMolecules are the future - TodoWrite is ephemeral, molecules are persistent institutional memory on the world chain. I tried to use TodoWrite for version bump and missed steps (codesigning, MCP verification). Molecules would have caught this.\n\n## Next Steps\n- bd mol bond implementation is priority\n- Max has gt-976 for crew lifecycle (enables automated refresh mid-molecule)\n\nCheck bd ready and gt-975/976 status.","status":"open","priority":2,"issue_type":"message","assignee":"beads/crew/dave","created_at":"2025-12-20T17:23:09.889562-08:00","updated_at":"2025-12-20T17:23:09.889562-08:00","sender":"Steve Yegge","ephemeral":true} +{"id":"bd-fgw3","title":"Update local installation","description":"Run install script or brew upgrade to get new version locally: curl -fsSL .../install.sh | bash","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:05.052016-08:00","updated_at":"2025-12-20T00:25:52.805029-08:00","closed_at":"2025-12-20T00:25:52.805029-08:00","close_reason":"Local bd updated to 0.30.7","dependencies":[{"issue_id":"bd-fgw3","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.248427-08:00","created_by":"daemon"},{"issue_id":"bd-fgw3","depends_on_id":"bd-si4g","type":"blocks","created_at":"2025-12-19T22:56:23.497325-08:00","created_by":"daemon"}]} +{"id":"bd-fi05","title":"bd sync fails with orphaned issues and duplicate ID conflict","description":"After fixing the deleted_at TEXT column scanning bug (commit 18b1eb2), bd sync still fails with two issues:\n\n1. Orphan Detection Warning: 12 orphaned child issues whose parents no longer exist (bd-cb64c226.* and bd-cbed9619.*)\n\n2. Import Failure: UNIQUE constraint failed for bd-360 - this tombstone exists in both DB and JSONL\n\nError: \"Import failed: error creating depth-0 issues: bulk insert issues: failed to insert issue bd-360: sqlite3: constraint failed: UNIQUE constraint failed: issues.id\"\n\nFix options:\n- Delete orphaned child issues with bd delete\n- Resolve bd-360 duplicate (in deletions.jsonl vs tombstone in DB)\n- Reset sync branch: git branch -f beads-sync main \u0026\u0026 git push --force-with-lease origin beads-sync","notes":"Fixed tombstone constraint violation bug. When deleting closed issues, the CHECK constraint (status = 'closed') = (closed_at IS NOT NULL) was violated because CreateTombstone didn't clear closed_at. Fix: set closed_at = NULL in tombstone creation SQL.\n\nThe sync data corruption (orphaned issues in beads-sync branch) requires manual cleanup: reset sync branch with 'git branch -f beads-sync main \u0026\u0026 git push --force-with-lease origin beads-sync'","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-13T07:14:33.831346-08:00","updated_at":"2025-12-13T10:50:48.545465-08:00","closed_at":"2025-12-13T07:30:33.843986-08:00"} +{"id":"bd-fom","title":"Remove all deletions.jsonl code except migration","description":"There's deletions manifest code spread across the entire codebase that should have been removed after tombstone migration:\n\nFiles with deletions code (non-migration):\n- internal/deletions/ - entire package\n- cmd/bd/sync.go - 25+ references, auto-compact, sanitize\n- cmd/bd/delete.go - dual-writes to deletions.jsonl\n- internal/importer/importer.go - checks deletions manifest\n- internal/syncbranch/worktree.go - merges deletions.jsonl\n- cmd/bd/doctor/fix/sync.go - cleanupDeletionsManifest\n- cmd/bd/doctor/fix/deletions.go - HydrateDeletionsManifest\n- cmd/bd/integrity.go - checks deletions for data loss\n- cmd/bd/deleted.go - entire command\n- cmd/bd/compact.go - pruneDeletionsManifest\n- cmd/bd/doctor.go - checkDeletionsManifest\n- Plus many more\n\nAction: Aggressively remove all non-migration deletions code. Tombstones are the only deletion mechanism now.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T13:29:04.960863-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-fu83","title":"Fix daemon/direct mode inconsistency in relate and duplicate commands","description":"The relate.go and duplicate.go commands have inconsistent daemon/direct mode handling:\n\nWhen daemonClient is connected, they resolve IDs via RPC but then perform updates directly via store.UpdateIssue(), bypassing the daemon.\n\nAffected locations:\n- relate.go:125-139 (runRelate update)\n- relate.go:235-246 (runUnrelate update) \n- duplicate.go:120 (runDuplicate update)\n- duplicate.go:207 (runSupersede update)\n\nShould either use RPC for updates when daemon is running, or document why direct access is intentional.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-16T20:52:54.164189-08:00","updated_at":"2025-12-16T20:52:54.164189-08:00"} +{"id":"bd-fx7v","title":"Improve test coverage for cmd/bd/doctor/fix (23.9% ā†’ 50%)","description":"The doctor/fix package has only 23.9% test coverage. The doctor fix functionality is important for troubleshooting.\n\nCurrent coverage: 23.9%\nTarget coverage: 50%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:05.67127-08:00","updated_at":"2025-12-13T21:01:20.839298-08:00"} +{"id":"bd-g9eu","title":"Investigate TestRoutingIntegration failure","description":"TestRoutingIntegration/maintainer_with_SSH_remote failed during pre-commit check with \"expected role maintainer, got contributor\".\nThis occurred while running `go test -short ./...` on darwin/arm64.\nThe failure appears unrelated to storage/sqlite changes.\nNeed to investigate if this is a flaky test or environmental issue.","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-20T15:55:19.337094-08:00","updated_at":"2025-11-20T15:55:19.337094-08:00"} +{"id":"bd-gjla","title":"Test Thread","description":"Initial message for threading test","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:19:51.704324-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-gjla","depends_on_id":"bd-f5cc","type":"duplicates","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} +{"id":"bd-gxq","title":"Simplify bd onboard to minimal AGENTS.md snippet pointing to bd prime","description":"## Context\nGH#604 raised concerns about bd onboard bloating AGENTS.md with ~100+ lines of static instructions that:\n- Load every session whether beads is being used or not\n- Get stale when bd upgrades\n- Waste tokens\n\n## Solution\nSimplify `bd onboard` to output a minimal snippet (~2 lines) that points to `bd prime`:\n\n```markdown\n## Issue Tracking\nThis project uses beads (`bd`) for issue tracking.\nRun `bd prime` for workflow context, or hooks auto-inject it.\n```\n\n## Rationale\n- `bd prime` is dynamic, concise (~80 lines), and always matches installed bd version\n- Hooks already auto-inject `bd prime` at session start when .beads/ detected\n- AGENTS.md only needs to mention beads exists, not contain full instructions\n\n## Implementation\n1. Update `cmd/bd/onboard.go` to output minimal snippet\n2. Keep `--output` flag for BD_GUIDE.md generation (may still be useful)\n3. Update help text to explain the new approach","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T11:42:38.604891-08:00","updated_at":"2025-12-18T11:47:28.020419-08:00","closed_at":"2025-12-18T11:47:28.020419-08:00","close_reason":"Implemented: bd onboard now outputs minimal snippet pointing to bd prime"} +{"id":"bd-haze","title":"Fix beads-9yc: pinned column missing from schema. gt mail...","description":"Fix beads-9yc: pinned column missing from schema. gt mail send fails because some beads DBs lack the pinned column. Add migration to ensure it exists.","status":"in_progress","priority":2,"issue_type":"task","created_at":"2025-12-19T15:05:33.394801-08:00","updated_at":"2025-12-19T15:05:33.524491-08:00"} +{"id":"bd-hkr6","title":"GH#518: Document bd setup command","description":"bd setup is undiscoverable. Add to README/docs. Currently only findable by grepping source. See GitHub issue #518.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:54.664668-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-hlsw","title":"Add sync resilience guardrails for forced pushes and prefix mismatches","description":"Beads can get into unrecoverable sync states when remote forces pushes occur (e.g., rebases) combined with prefix mismatches from multi-worker scenarios. Add detection, prevention, and auto-recovery features to handle this gracefully.","status":"open","priority":2,"issue_type":"epic","created_at":"2025-12-14T10:40:14.872875259-07:00","updated_at":"2025-12-14T10:40:14.872875259-07:00"} +{"id":"bd-hlsw.3","title":"Auto-recovery mode (bd sync --auto-recover)","description":"Add bd sync --auto-recover flag that: detects problematic sync state, backs up .beads/issues.db with timestamp, rebuilds DB from JSONL atomically, verifies consistency, reports what was fixed. Provides safety valve when sync integrity fails.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-14T10:40:20.599836875-07:00","updated_at":"2025-12-14T10:40:20.599836875-07:00","dependencies":[{"issue_id":"bd-hlsw.3","depends_on_id":"bd-hlsw","type":"parent-child","created_at":"2025-12-14T10:40:20.600435888-07:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-hlsw.4","title":"Sync branch integrity guards","description":"Track sync branch parent commit. If sync branch was force-pushed, warn user and require confirmation before proceeding. Add option to reset to remote if user accepts rebase. Prevents silent corruption from forced pushes.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-14T10:40:20.645402352-07:00","updated_at":"2025-12-14T10:40:20.645402352-07:00","dependencies":[{"issue_id":"bd-hlsw.4","depends_on_id":"bd-hlsw","type":"parent-child","created_at":"2025-12-14T10:40:20.646425761-07:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-hnkg","title":"GH#540: Add silent quick-capture mode (bd q)","description":"Add bd q alias for quick capture that outputs only issue ID. Useful for piping/scripting. See GitHub issue #540.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:03:38.260135-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} +{"id":"bd-hvng","title":"Merge: bd-w193","description":"branch: polecat/nux\ntarget: main\nsource_issue: bd-w193\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:23:47.496139-08:00","updated_at":"2025-12-19T23:23:47.496139-08:00"} +{"id":"bd-hw3w","title":"Update info.go versionChanges","description":"Add entry to versionChanges in cmd/bd/info.go with agent-actionable changes for {{version}}","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:01.016558-08:00","updated_at":"2025-12-20T01:23:50.3879-08:00","closed_at":"2025-12-20T01:23:50.3879-08:00","close_reason":"Superseded by bd-hzvz (actual 0.30.7 release)","dependencies":[{"issue_id":"bd-hw3w","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:14.941855-08:00","created_by":"daemon"},{"issue_id":"bd-hw3w","depends_on_id":"bd-czss","type":"blocks","created_at":"2025-12-19T22:56:23.219257-08:00","created_by":"daemon"}]} +{"id":"bd-hy9p","title":"Add --body-file flag to bd create for reading descriptions from files","description":"## Problem\n\nCreating issues with long/complex descriptions via CLI requires shell escaping gymnastics:\n\n```bash\n# Current workaround - awkward heredoc quoting\nbd create --title=\"...\" --description=\"$(cat \u003c\u003c'EOF'\n...markdown...\nEOF\n)\"\n\n# Often fails with quote escaping errors in eval context\n# Agents resort to writing temp files then reading them\n```\n\n## Proposed Solution\n\nAdd `--body-file` and `--description-file` flags to read description from a file, matching `gh` CLI pattern.\n\n```bash\n# Natural pattern that aligns with training data\ncat \u003e /tmp/desc.md \u003c\u003c 'EOF'\n...markdown content...\nEOF\n\nbd create --title=\"...\" --body-file=/tmp/desc.md\n```\n\n## Implementation\n\n### 1. Add new flags to `bd create`\n\n```go\ncreateCmd.Flags().String(\"body-file\", \"\", \"Read description from file (use - for stdin)\")\ncreateCmd.Flags().String(\"description-file\", \"\", \"Alias for --body-file\")\n```\n\n### 2. Flag precedence\n\n- If `--body-file` or `--description-file` is provided, read from file\n- If value is `-`, read from stdin\n- Otherwise fall back to `--body` or `--description` flag\n- If neither provided, description is empty (current behavior)\n\n### 3. Error handling\n\n- File doesn't exist ā†’ clear error message\n- File not readable ā†’ clear error message\n- stdin specified but not available ā†’ clear error message\n\n## Benefits\n\nāœ… **Matches training data**: `gh issue create --body-file file.txt` is a common pattern\nāœ… **No shell escaping issues**: File content is read directly\nāœ… **Works with any content**: Markdown, special characters, quotes, etc.\nāœ… **Agent-friendly**: Agents already write complex content to temp files\nāœ… **User-friendly**: Easier for humans too when pasting long descriptions\n\n## Related Commands\n\nConsider adding similar support to:\n- `bd update --body-file` (for updating descriptions)\n- `bd comment --body-file` (if/when we add comments)\n\n## Examples\n\n```bash\n# From file\nbd create --title=\"Add new feature\" --body-file=feature.md\n\n# From stdin\necho \"Quick description\" | bd create --title=\"Bug fix\" --body-file=-\n\n# With other flags\nbd create \\\n --title=\"Security issue\" \\\n --type=bug \\\n --priority=0 \\\n --body-file=security-report.md \\\n --label=security\n```\n\n## Testing\n\n- Test with normal files\n- Test with stdin (`-`)\n- Test with non-existent files (error handling)\n- Test with binary files (should handle gracefully)\n- Test with empty files (valid - empty description)\n- Test that `--description-file` and `--body-file` are equivalent aliases","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-11-22T00:02:08.762684-08:00","updated_at":"2025-12-17T23:13:40.536024-08:00","closed_at":"2025-12-17T17:28:52.505239-08:00"} +{"id":"bd-hzvz","title":"Update info.go versionChanges","description":"Add entry to versionChanges in cmd/bd/info.go with agent-actionable changes for 0.30.7","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649359-08:00","updated_at":"2025-12-19T22:57:31.604229-08:00","closed_at":"2025-12-19T22:57:31.604229-08:00","close_reason":"Updated info.go versionChanges","dependencies":[{"issue_id":"bd-hzvz","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.652068-08:00","created_by":"stevey"},{"issue_id":"bd-hzvz","depends_on_id":"bd-2ep8","type":"blocks","created_at":"2025-12-19T22:56:48.652376-08:00","created_by":"stevey"}]} +{"id":"bd-in7","title":"Test message","description":"Hello world","status":"closed","priority":2,"issue_type":"message","created_at":"2025-12-17T23:16:13.184946-08:00","updated_at":"2025-12-18T17:42:26.000073-08:00","closed_at":"2025-12-17T23:37:38.563369-08:00"} +{"id":"bd-indn","title":"bd template commands fail with daemon mode","description":"The `bd template show` and `bd template instantiate` commands fail with 'Error loading template: no database connection' when daemon is running.\n\n**Reproduction:**\n```bash\nbd daemon --start\nbd template show bd-qqc # Error: no database connection\nbd template show bd-qqc --no-daemon # Works\n```\n\n**Expected:** Template commands should work with daemon like other commands.\n\n**Workaround:** Use `--no-daemon` flag.\n\n**Location:** Likely in cmd/bd/template.go - daemon RPC path not implemented for template operations.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-18T22:57:35.16596-08:00","updated_at":"2025-12-18T22:57:35.16596-08:00"} +{"id":"bd-io8c","title":"Improve test coverage for internal/syncbranch (33.0% ā†’ 70%)","description":"The syncbranch package has only 33.0% test coverage. This package handles git sync operations and is critical for data integrity.\n\nCurrent coverage: 33.0%\nTarget coverage: 70%","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-13T20:43:02.079145-08:00","updated_at":"2025-12-13T21:01:14.972533-08:00"} +{"id":"bd-iq7n","title":"Audit and fix JSONL filename mismatches across all repo clones","description":"## Problem\n\nMultiple clones of repos are configured with different JSONL filenames (issues.jsonl vs beads.jsonl), causing:\n1. JSONL files to be resurrected after deletion (one clone pushes issues.jsonl, another pushes beads.jsonl)\n2. Agents unable to see issues filed by other agents after sync\n3. Merge conflicts and data inconsistencies\n\n## Root Cause\n\nWhen repos were \"bd doctored\" or initialized at different times, some got issues.jsonl (old default) and others got beads.jsonl (Beads repo specific). These clones push their respective files, creating duplicates.\n\n## Task\n\nScan all repo clones under ~/src/ (1-2 levels deep) and standardize their JSONL configuration.\n\n### Step 1: Find all beads-enabled repos\n\n```bash\n# Find all directories named 'beads' at levels 1-2 under ~/src/\nfind ~/src -maxdepth 2 -type d -name beads\n```\n\n### Step 2: For each repo found, check configuration\n\nFor each directory from Step 1, check:\n- Does `.beads/metadata.json` exist?\n- What is the `jsonl_export` value?\n- What JSONL files actually exist in `.beads/`?\n- Are there multiple JSONL files (problem!)?\n\n### Step 3: Create audit report\n\nGenerate a report showing:\n```\nRepo Path | Config | Actual Files | Status\n----------------------------------- | ------------- | ---------------------- | --------\n~/src/beads | beads.jsonl | beads.jsonl | OK\n~/src/dave/beads | issues.jsonl | issues.jsonl | MISMATCH\n~/src/emma/beads | issues.jsonl | issues.jsonl, beads.jsonl | DUPLICATE!\n```\n\n### Step 4: Determine canonical name for each repo\n\nFor repos that are the SAME git repository (check `git remote -v`):\n- Group them together\n- Determine which JSONL filename should be canonical (majority wins, or beads.jsonl for the beads repo itself)\n- List which clones need to be updated\n\n### Step 5: Generate fix script\n\nCreate a script that for each mismatched clone:\n1. Updates `.beads/metadata.json` to use the canonical name\n2. If JSONL file needs renaming: `git mv .beads/old.jsonl .beads/new.jsonl`\n3. Removes any duplicate JSONL files: `git rm .beads/duplicate.jsonl`\n4. Commits the change\n5. Syncs: `bd sync`\n\n### Expected Output\n\n1. Audit report showing all repos and their config status\n2. List of repos grouped by git remote (same repository)\n3. Fix script or manual instructions for standardizing each repo\n4. Verification that after fixes, all clones of the same repo use the same JSONL filename\n\n### Edge Cases\n\n- Handle repos without metadata.json (use default discovery)\n- Handle repos with no git remote (standalone/local)\n- Handle repos that are not git repositories\n- Don't modify repos with uncommitted changes (warn instead)\n\n### Success Criteria\n\n- All clones of the same git repository use the same JSONL filename\n- No duplicate JSONL files in any repo\n- All configurations documented in metadata.json\n- bd doctor passes on all repos","status":"closed","issue_type":"task","created_at":"2025-11-21T23:58:35.044762-08:00","updated_at":"2025-12-17T23:13:40.531403-08:00","closed_at":"2025-12-17T16:50:59.510972-08:00"} +{"id":"bd-j3il","title":"Add bd reset command for clean slate restart","description":"Implement a command to reset beads to a clean starting state.\n\n**Context:** GitHub issue #479 - users sometimes get beads into an invalid state after updates, and there's no clean way to start fresh. The git backup/restore mechanism that protects against accidental deletion also makes it hard to intentionally reset.\n\n**Current workaround** (from maphew):\n```bash\nbd daemons killall\ngit rm .beads/*.jsonl\ngit commit -m 'remove old issues'\nrm .beads/*\nbd init\nbd onboard\n```\n\n**Desired:** A proper `bd reset` command that handles this cleanly and safely.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-13T08:41:34.956552+11:00","updated_at":"2025-12-13T08:43:49.970591+11:00","closed_at":"2025-12-13T08:43:49.970591+11:00"} +{"id":"bd-j6lr","title":"GH#402: Add --parent flag documentation to bd onboard","description":"bd onboard output is missing --parent flag for epic subtasks. Agents guess wrong syntax (--deps parent:). See GitHub issue #402.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:56.594829-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-jgxi","title":"Auto-migrate database on CLI version bump","description":"When CLI is upgraded (e.g., 0.24.0 ā†’ 0.24.1), database version becomes stale. Add auto-migration in PersistentPreRun or daemon startup. Check dbVersion != CLIVersion and run bd migrate automatically. Fixes recurring UX issue where bd doctor shows version mismatch after every CLI upgrade.","status":"closed","issue_type":"feature","created_at":"2025-11-21T23:16:09.004619-08:00","updated_at":"2025-12-17T23:13:40.535453-08:00","closed_at":"2025-12-17T17:15:43.605762-08:00","dependencies":[{"issue_id":"bd-jgxi","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:09.005513-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-jvu","title":"Add bd update --parent flag to change issue parent","description":"Allow changing an issue's parent with bd update --parent \u003cnew-parent-id\u003e. Useful for reorganizing tasks under different epics or moving issues between hierarchies. Should update the parent-child dependency relationship.","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-17T22:24:07.274485-08:00","updated_at":"2025-12-17T22:34:07.318938-08:00","closed_at":"2025-12-17T22:34:07.318938-08:00"} +{"id":"bd-kpy","title":"Sync race: rebase-based divergence recovery resurrects tombstones","description":"## Problem\nWhen two repos sync simultaneously, tombstones can be resurrected:\n\n1. Repo A deletes issue (creates tombstone), pushes to sync branch\n2. Repo B (with 'closed' status) exports and tries to push\n3. Push fails (non-fast-forward)\n4. fetchAndRebaseInWorktree does git rebase\n5. Git rebase applies B's 'closed' patch on top of A's 'tombstone'\n6. TEXT-level rebase doesn't invoke beads merge driver\n7. 'closed' overwrites 'tombstone' = resurrection\n\n## Root Cause\nCommitToSyncBranch uses git rebase for divergence recovery, but rebase is text-level, not content-level. The proper content-level merge in PullFromSyncBranch handles tombstones correctly, but it runs AFTER the problematic push.\n\n## Proposed Fix\nOption 1: Don't push in CommitToSyncBranch - let PullFromSyncBranch handle merge+push\nOption 2: Replace git rebase with content-level merge in fetchAndRebaseInWorktree\nOption 3: Reorder sync steps: Export ā†’ Pull/Merge ā†’ Commit ā†’ Push\n\n## Workaround Applied\nExcluded tombstones from orphan detection warnings (commit 1e97d9cc).\n\nSee also: bd-3852 (Add orphan detection migration)","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-17T23:29:33.049272-08:00","updated_at":"2025-12-17T23:29:33.049272-08:00"} +{"id":"bd-kqo1","title":"Show pin indicator in bd list output","description":"Add a visual indicator (e.g., pin emoji or [P] marker) for pinned issues in bd list output so users can easily identify them.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-18T23:33:47.402549-08:00","updated_at":"2025-12-18T23:33:47.402549-08:00","dependencies":[{"issue_id":"bd-kqo1","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.771791-08:00","created_by":"daemon"},{"issue_id":"bd-kqo1","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.985271-08:00","created_by":"daemon"}]} +{"id":"bd-kwro","title":"Beads Messaging \u0026 Knowledge Graph (v0.30.2)","description":"Add messaging semantics and extended graph links to Beads, enabling it to serve as\nthe universal substrate for knowledge work - issues, messages, documents, and threads\nas nodes in a queryable graph.\n\n## Motivation\n\nGas Town (GGT) needs inter-agent communication. Rather than a separate mail system,\ncollapse messaging into Beads - one system, one sync, one query interface, all in git.\n\nThis also positions Beads as a foundation for:\n- Company-wide issue tracking (like Notion)\n- Threaded conversations (like Reddit/Slack)\n- Knowledge graphs with loose associations\n- Arbitrary workflow UIs built on top\n\n## New Issue Type\n\n**message** - ephemeral communication between workers\n- sender: who sent it\n- assignee: recipient\n- priority: P0 (urgent) to P4 (routine)\n- status: open (unread) -\u003e closed (read)\n- ephemeral: true = can be bulk-deleted after swarm\n\n## New Graph Links\n\n**replies_to** - conversation threading\n- Messages reply to messages\n- Enables Reddit-style nested threads\n- Different from parent_id (not hierarchy, its conversation flow)\n\n**relates_to** - loose see also associations\n- Bidirectional knowledge graph edges\n- Not blocking, not hierarchical, just related\n- Enables discovery and traversal\n\n**duplicates** - deduplication at scale\n- Mark issue B as duplicate of canonical issue A\n- Close B, link to A\n- Essential for large issue databases\n\n**supersedes** - version chains\n- Design Doc v2 supersedes Design Doc v1\n- Track evolution of artifacts\n\n## New Fields (optional, any issue type)\n\n- sender (string) - who created this (for messages)\n- ephemeral (boolean) - can be bulk-deleted when closed\n\n## New Commands\n\nMessaging:\n- bd mail send \u003crecipient\u003e -s Subject -m Body\n- bd mail inbox (list open messages for me)\n- bd mail read \u003cid\u003e (show message content)\n- bd mail ack \u003cid\u003e (mark as read/close)\n- bd mail reply \u003cid\u003e -m Response (reply to thread)\n\nGraph links:\n- bd relate \u003cid1\u003e \u003cid2\u003e (create relates_to link)\n- bd duplicate \u003cid\u003e --of \u003ccanonical\u003e (mark as duplicate)\n- bd supersede \u003cid\u003e --with \u003cnew\u003e (mark superseded)\n\nCleanup:\n- bd cleanup --ephemeral (delete closed ephemeral issues)\n\n## Identity Configuration\n\nWorkers need identity for sender field:\n- BEADS_IDENTITY env var\n- Or .beads/config.json: identity field\n\n## Hooks (for GGT integration)\n\nBeads as platform - extensible without knowing about GGT.\nHook files in .beads/hooks/:\n- on_create (runs after bd create)\n- on_update (runs after bd update)\n- on_close (runs after bd close)\n- on_message (runs after bd mail send)\n\nGGT registers hooks to notify daemons of new messages.\n\n## Schema Changes (Migration Required)\n\nAdd to issue schema:\n- type: message (new valid type)\n- sender: string (optional)\n- ephemeral: boolean (optional)\n- replies_to: string (issue ID, optional)\n- relates_to: []string (issue IDs, optional)\n- duplicates: string (canonical issue ID, optional)\n- superseded_by: string (new issue ID, optional)\n\nMigration adds fields as optional - existing beads unchanged.\n\n## Success Criteria\n\n1. bd mail send/inbox/read/ack/reply work end-to-end\n2. replies_to creates proper thread structure\n3. relates_to, duplicates, supersedes links queryable\n4. Hooks fire on create/update/close/message\n5. Identity configurable via env or config\n6. Migration preserves all existing data\n7. All new features have tests","status":"tombstone","issue_type":"epic","created_at":"2025-12-16T03:00:53.912223-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"epic"} +{"id":"bd-kwro.1","title":"Schema: Add message type and new fields","description":"Add to internal/storage/sqlite/schema.go and models:\n\nNew issue_type value:\n- message\n\nNew optional fields on Issue struct:\n- Sender string (who sent this)\n- Ephemeral bool (can be bulk-deleted)\n- RepliesTo string (issue ID for threading)\n- RelatesTo []string (issue IDs for knowledge graph)\n- Duplicates string (canonical issue ID)\n- SupersededBy string (replacement issue ID)\n\nUpdate:\n- internal/storage/sqlite/schema.go - add columns\n- internal/models/issue.go - add fields to struct\n- internal/storage/sqlite/sqlite.go - CRUD operations\n- Create migration from v0.30.1\n\nEnsure backward compatibility - all new fields optional.","status":"tombstone","issue_type":"task","created_at":"2025-12-16T03:01:19.777604-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-kwro.10","title":"Tests for messaging and graph links","description":"Comprehensive test coverage for all new features.\n\nTest files:\n- cmd/bd/mail_test.go - mail command tests\n- internal/storage/sqlite/graph_links_test.go - graph link tests\n- internal/hooks/hooks_test.go - hook execution tests\n\nTest cases:\n- Mail send/inbox/read/ack lifecycle\n- Thread creation and traversal (replies_to)\n- Bidirectional relates_to\n- Duplicate marking and queries\n- Supersedes chains\n- Ephemeral cleanup\n- Identity resolution priority\n- Hook execution (mock hooks)\n- Schema migration preserves data\n\nTarget: \u003e80% coverage on new code","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T03:02:34.050136-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-kwro.11","title":"Documentation for messaging and graph links","description":"Document all new features.\n\nFiles to update:\n- README.md - brief mention of messaging capability\n- AGENTS.md - update for AI agents using bd mail\n- docs/messaging.md (new) - full messaging reference\n- docs/graph-links.md (new) - graph link reference\n- CHANGELOG.md - v0.30.2 release notes\n\nTopics to cover:\n- Mail commands with examples\n- Graph link types and use cases\n- Identity configuration\n- Hooks setup for notifications\n- Migration notes","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T03:02:39.548518-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-kwro.2","title":"Graph Link: replies_to for conversation threading","description":"Implement replies_to link type for message threading.\n\nNew command:\n- bd mail reply \u003cid\u003e -m 'Response' creates a message with replies_to set\n\nQuery support:\n- bd show \u003cid\u003e --thread shows full conversation thread\n- Thread traversal in storage layer\n\nStorage:\n- replies_to column in issues table\n- Index for efficient thread queries\n\nThis enables Reddit-style nested threads where messages reply to other messages.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:25.292728-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-kwro.3","title":"Graph Link: relates_to for knowledge graph","description":"Implement relates_to link type for loose associations.\n\nNew command:\n- bd relate \u003cid1\u003e \u003cid2\u003e - creates bidirectional relates_to link\n\nQuery support:\n- bd show \u003cid\u003e --related shows related issues\n- bd list --related-to \u003cid\u003e\n\nStorage:\n- relates_to stored as JSON array of issue IDs\n- Consider: separate junction table for efficiency at scale?\n\nThis enables 'see also' connections without blocking or hierarchy.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:30.793115-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-kwro.4","title":"Graph Link: duplicates for deduplication","description":"Implement duplicates link type for marking issues as duplicates.\n\nNew command:\n- bd duplicate \u003cid\u003e --of \u003ccanonical\u003e - marks id as duplicate of canonical\n- Auto-closes the duplicate issue\n\nQuery support:\n- bd show \u003cid\u003e shows 'Duplicate of: \u003ccanonical\u003e'\n- bd list --duplicates shows all duplicate pairs\n\nStorage:\n- duplicates column pointing to canonical issue ID\n\nEssential for large issue databases with many similar reports.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:36.257223-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-kwro.5","title":"Graph Link: supersedes for version chains","description":"Implement supersedes link type for version tracking.\n\nNew command:\n- bd supersede \u003cid\u003e --with \u003cnew\u003e - marks id as superseded by new\n- Auto-closes the superseded issue\n\nQuery support:\n- bd show \u003cid\u003e shows 'Superseded by: \u003cnew\u003e'\n- bd show \u003cnew\u003e shows 'Supersedes: \u003cid\u003e'\n- bd list --superseded shows version chains\n\nStorage:\n- superseded_by column pointing to replacement issue\n\nUseful for design docs, specs, and evolving artifacts.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:41.749294-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-kwro.6","title":"Mail Commands: bd mail send/inbox/read/ack","description":"Implement core mail commands in cmd/bd/mail.go\n\nCommands:\n- bd mail send \u003crecipient\u003e -s 'Subject' -m 'Body' [--urgent]\n - Creates issue with type=message, sender=identity, assignee=recipient\n - --urgent sets priority=0\n \n- bd mail inbox [--from \u003csender\u003e] [--priority \u003cn\u003e]\n - Lists open messages where assignee=my identity\n - Sorted by priority, then date\n \n- bd mail read \u003cid\u003e\n - Shows full message content (subject, body, sender, timestamp)\n - Does NOT close (separate from ack)\n \n- bd mail ack \u003cid\u003e\n - Marks message as read by closing it\n - Can ack multiple: bd mail ack \u003cid1\u003e \u003cid2\u003e ...\n\nRequires: Identity configuration (bd-kwro.7)","status":"tombstone","issue_type":"task","created_at":"2025-12-16T03:02:12.103755-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-kwro.7","title":"Identity Configuration","description":"Implement identity system for sender field.\n\nConfiguration sources (in priority order):\n1. --identity flag on commands\n2. BEADS_IDENTITY environment variable\n3. .beads/config.json: {\"identity\": \"worker-name\"}\n4. Default: git user.name or hostname\n\nNew config file support:\n- .beads/config.json for per-repo settings\n- identity field for messaging\n\nHelper function:\n- GetIdentity() string - resolves identity from sources\n\nUpdate bd mail send to use GetIdentity() for sender field.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:02:17.603608-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-kwro.8","title":"Hooks System","description":"Implement hook system for extensibility.\n\nHook directory: .beads/hooks/\nHook files (executable scripts):\n- on_create - runs after bd create\n- on_update - runs after bd update \n- on_close - runs after bd close\n- on_message - runs after bd mail send\n\nHook invocation:\n- Pass issue ID as first argument\n- Pass event type as second argument\n- Pass JSON issue data on stdin\n- Run asynchronously (dont block command)\n\nExample hook (GGT notification):\n #!/bin/bash\n gt notify --event=$2 --issue=$1\n\nThis allows GGT to register notification handlers without Beads knowing about GGT.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:02:23.086393-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-kwro.9","title":"Cleanup: --ephemeral flag","description":"Update bd cleanup to handle ephemeral issues.\n\nNew flag:\n- bd cleanup --ephemeral - deletes all CLOSED issues with ephemeral=true\n\nBehavior:\n- Only deletes if status=closed AND ephemeral=true\n- Respects --dry-run flag\n- Reports count of deleted ephemeral issues\n\nThis allows swarm cleanup to remove transient messages without affecting permanent issues.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T03:02:28.563871-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-kyo","title":"Run tests and linting","description":"Run the full test suite and linter:\n\n```bash\nTMPDIR=/tmp go test -short ./...\ngolangci-lint run ./...\n```\n\nFix any failures. Linting warnings acceptable (see LINTING.md).","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:59.290588-08:00","updated_at":"2025-12-18T22:44:36.570262-08:00","closed_at":"2025-12-18T22:44:36.570262-08:00","dependencies":[{"issue_id":"bd-kyo","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.370234-08:00","created_by":"daemon"},{"issue_id":"bd-kyo","depends_on_id":"bd-8hy","type":"blocks","created_at":"2025-12-18T22:43:20.570742-08:00","created_by":"daemon"}]} +{"id":"bd-lfak","title":"bd preflight: PR readiness checks for contributors","description":"## Vision\n\nEncode project-specific institutional knowledge into executable checks. CONTRIBUTING.md is documentation that's read once and forgotten; `bd preflight` is documentation that runs at exactly the right moment.\n\n## Problem Statement\n\nContributors face a \"last mile\" problem - they do the work but stumble on project-specific gotchas at PR time:\n- Nix vendorHash gets stale when go.sum changes\n- Beads artifacts leak into PRs (see bd-umbf for namespace solution)\n- Version mismatches between version.go and default.nix\n- Tests/lint not run locally before pushing\n- Other project-specific checks that only surface when CI fails\n\nThese are too obscure to remember, exist in docs nobody reads end-to-end, and waste CI round-trips.\n\n## Why beads?\n\nBeads already has a foothold in the contributor workflow. It knows:\n- Git state (staged files, branch, dirty status)\n- Project structure\n- The specific issue being worked on\n- Project-specific configuration\n\n## Proposed Interface\n\n### Tier 1: Checklist Mode (v1)\n\n $ bd preflight\n PR Readiness Checklist:\n\n [ ] Tests pass: go test -short ./...\n [ ] Lint passes: golangci-lint run ./...\n [ ] No beads pollution: check .beads/issues.jsonl diff\n [ ] Nix hash current: go.sum unchanged or vendorHash updated\n [ ] Version sync: version.go matches default.nix\n\n Run 'bd preflight --check' to validate automatically.\n\n### Tier 2: Check Mode (v2)\n\n $ bd preflight --check\n āœ“ Tests pass\n āœ“ Lint passes\n āš  Beads pollution: 3 issues in diff - are these project issues or personal?\n āœ— Nix hash stale: go.sum changed, vendorHash needs update\n Fix: sha256-KRR6dXzsSw8OmEHGBEVDBOoIgfoZ2p0541T9ayjGHlI=\n āœ“ Version sync\n\n 1 error, 1 warning. Run 'bd preflight --fix' to auto-fix where possible.\n\n### Tier 3: Fix Mode (v3)\n\n $ bd preflight --fix\n āœ“ Updated vendorHash in default.nix\n āš  Cannot auto-fix beads pollution - manual review needed\n\n## Checks to Implement\n\n| Check | Description | Auto-fixable |\n|-------|-------------|--------------|\n| tests | Run go test -short ./... | No |\n| lint | Run golangci-lint | Partial (gofmt) |\n| beads-pollution | Detect personal issues in diff | No (see bd-umbf) |\n| nix-hash | Detect stale vendorHash | Yes (if nix available) |\n| version-sync | version.go matches default.nix | Yes |\n| no-debug | No TODO/FIXME/console.log | Warn only |\n| clean-stage | No unintended files staged | Warn only |\n\n## Future: Configuration\n\nMake checks configurable per-project via .beads/preflight.yaml:\n\n preflight:\n checks:\n - name: tests\n run: go test -short ./...\n required: true\n - name: no-secrets\n pattern: \"**/*.env\"\n staged: deny\n - name: custom-check\n run: ./scripts/validate.sh\n\nThis lets any project using beads define their own preflight checks.\n\n## Implementation Phases\n\n### Phase 1: Static Checklist\n- Implement bd preflight with hardcoded checklist for beads\n- No execution, just prints what to check\n- Update CONTRIBUTING.md to reference it\n\n### Phase 2: Automated Checks\n- Implement bd preflight --check\n- Run tests, lint, detect stale hashes\n- Clear pass/fail/warn output\n\n### Phase 3: Auto-fix\n- Implement bd preflight --fix\n- Fix vendorHash, version sync\n- Integrate with bd-umbf solution for pollution\n\n### Phase 4: Configuration\n- .beads/preflight.yaml support\n- Make it useful for other projects using beads\n- Plugin/hook system for custom checks\n\n## Dependencies\n\n- bd-umbf: Namespace isolation for beads pollution (blocking for full solution)\n\n## Success Metrics\n\n- Fewer CI failures on first PR push\n- Reduced \"fix nix hash\" commits\n- Contributors report preflight caught issues before CI","status":"open","priority":2,"issue_type":"epic","created_at":"2025-12-13T18:01:39.587078-08:00","updated_at":"2025-12-13T18:01:39.587078-08:00","dependencies":[{"issue_id":"bd-lfak","depends_on_id":"bd-umbf","type":"blocks","created_at":"2025-12-13T18:01:46.059901-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-llfl","title":"Improve test coverage for cmd/bd CLI (26.2% ā†’ 50%)","description":"The main CLI package (cmd/bd) has only 26.2% test coverage. CLI commands should have at least 50% coverage to ensure reliability.\n\nKey areas with low/no coverage:\n- daemon_autostart.go (multiple 0% functions)\n- compact.go (several 0% functions)\n- Various command handlers\n\nCurrent coverage: 26.2%\nTarget coverage: 50%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:03.123341-08:00","updated_at":"2025-12-13T21:01:18.901944-08:00"} +{"id":"bd-lo4","title":"Test pinned issue","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-18T21:44:49.031385-08:00","updated_at":"2025-12-18T21:47:25.055109-08:00","deleted_at":"2025-12-18T21:47:25.055109-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-lsv4","title":"GH#444: Fix inconsistent status naming in_progress vs in-progress","description":"Documentation uses in-progress (hyphen) but code expects in_progress (underscore). Update all docs to use canonical in_progress. See GitHub issue #444.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:14.349425-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-lw0x","title":"Fix bd sync race condition with daemon causing dirty working directory","description":"After bd sync completes with sync.branch mode, subsequent bd commands or daemon file watcher would see a hash mismatch and trigger auto-import, which then schedules re-export, dirtying the working directory.\n\n**Root cause:**\n1. bd sync exports JSONL with NEW content (hash H1)\n2. bd sync updates jsonl_content_hash = H1 in DB\n3. bd sync restores JSONL from HEAD (OLD content, hash H0)\n4. Now: file hash = H0, DB hash = H1 (MISMATCH)\n5. Daemon or next CLI command sees mismatch, imports from OLD JSONL\n6. Import triggers re-export ā†’ file is dirty\n\n**Fix:**\nAfter restoreBeadsDirFromBranch(), update jsonl_content_hash to match the restored file's hash. This ensures daemon and CLI see file hash = DB hash ā†’ no spurious import/export cycle.\n\nRelated: bd-c83r (multiple daemon prevention)","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-13T06:42:17.130839-08:00","updated_at":"2025-12-13T06:43:33.329042-08:00","closed_at":"2025-12-13T06:43:33.329042-08:00"} +{"id":"bd-lxzx","title":"Add close_reason to JSONL export format documentation","description":"PR #551 now persists close_reason to the database, but there's a question about whether this field should be exported to JSONL format.\n\n## Current State\n- close_reason is stored in issues.close_reason column\n- close_reason is also stored in events table (audit trail)\n- The JSONL export format may or may not include close_reason\n\n## Questions\n1. Should close_reason be exported to JSONL format?\n2. If yes, where should it go (root level or nested in events)?\n3. Should there be any special handling to avoid duplication?\n4. How should close_reason be handled during JSONL import?\n\n## Why This Matters\n- JSONL is the git-friendly sync format\n- Other beads instances import from JSONL\n- close_reason is meaningful data that should be preserved across clones\n\n## Suggested Action\n- Check if close_reason is currently exported in JSONL\n- If not, add it to the export schema\n- Document the field in JSONL format spec\n- Add tests for round-trip (export -\u003e import -\u003e verify close_reason)","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:17.414916-08:00","updated_at":"2025-12-14T14:25:17.414916-08:00","dependencies":[{"issue_id":"bd-lxzx","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:17.416131-08:00","created_by":"stevey","metadata":"{}"}]} {"id":"bd-m8ro","title":"Improve test coverage for internal/rpc (47.5% ā†’ 60%)","description":"The RPC package has only 47.5% test coverage. RPC is the communication layer for daemon operations.\n\nCurrent coverage: 47.5%\nTarget coverage: 60%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:09.515299-08:00","updated_at":"2025-12-13T21:01:17.17404-08:00"} {"id":"bd-mql4","title":"getLocalSyncBranch silently ignores YAML parse errors","description":"In autoimport.go:170-172, YAML parsing errors are silently ignored. If a user has malformed YAML in config.yaml, sync-branch will just silently be empty with no feedback.\n\nRecommendation: Add debug logging since this function is only called during auto-import, and debugging silent failures is painful.\n\nAdd: debug.Logf(\"Warning: failed to parse config.yaml: %v\", err)","status":"open","priority":4,"issue_type":"task","created_at":"2025-12-07T02:03:44.217728-08:00","updated_at":"2025-12-07T02:03:44.217728-08:00"} -{"id":"bd-3x9o","title":"Merge: bd-by0d","description":"branch: polecat/furiosa\ntarget: main\nsource_issue: bd-by0d\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:21:26.817906-08:00","updated_at":"2025-12-19T23:21:26.817906-08:00"} -{"id":"bd-kqo1","title":"Show pin indicator in bd list output","description":"Add a visual indicator (e.g., pin emoji or [P] marker) for pinned issues in bd list output so users can easily identify them.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-18T23:33:47.402549-08:00","updated_at":"2025-12-18T23:33:47.402549-08:00","dependencies":[{"issue_id":"bd-kqo1","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.985271-08:00","created_by":"daemon"},{"issue_id":"bd-kqo1","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.771791-08:00","created_by":"daemon"}]} -{"id":"bd-9g1z","title":"Fix or remove TestFindJSONLPathDefault (issue #356)","description":"Code health review found .test-skip permanently skips TestFindJSONLPathDefault.\n\nThe test references issue #356 about wrong JSONL filename expectations (issues.jsonl vs beads.jsonl).\n\nTest file: internal/beads/beads_test.go\n\nThe underlying migration from beads.jsonl to issues.jsonl may be complete, so either:\n1. Fix the test expectations\n2. Remove the test if no longer needed\n3. Document why it remains skipped","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-16T18:17:31.33975-08:00","updated_at":"2025-12-16T18:17:31.33975-08:00","dependencies":[{"issue_id":"bd-9g1z","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.169617-08:00","created_by":"daemon"}]} -{"id":"bd-qqc.2","title":"Add {{version}} to versionChanges in info.go","description":"Add new entry at the TOP of versionChanges array in cmd/bd/info.go:\n\n```go\n{\n Version: \"{{version}}\",\n Date: \"{{date}}\",\n Changes: []string{\n // Add notable changes here\n },\n},\n```\n\nCopy changes from CHANGELOG.md [Unreleased] section.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:27.032117-08:00","updated_at":"2025-12-18T23:34:18.631996-08:00","closed_at":"2025-12-18T22:41:41.836137-08:00","dependencies":[{"issue_id":"bd-qqc.2","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:27.032746-08:00","created_by":"stevey"}]} -{"id":"bd-ola6","title":"Implement transaction retry logic for SQLITE_BUSY","description":"BEGIN IMMEDIATE fails immediately on SQLITE_BUSY instead of retrying with exponential backoff.\n\nLocation: internal/storage/sqlite/sqlite.go:223-225\n\nProblem:\n- Under concurrent write load, BEGIN IMMEDIATE can fail with SQLITE_BUSY\n- Current implementation fails immediately instead of retrying\n- Results in spurious failures under normal concurrent usage\n\nSolution: Implement exponential backoff retry:\n- Retry up to N times (e.g., 5)\n- Backoff: 10ms, 20ms, 40ms, 80ms, 160ms\n- Check for context cancellation between retries\n- Only retry on SQLITE_BUSY/database locked errors\n\nImpact: Spurious failures under concurrent write load\n\nEffort: 3 hours","status":"open","priority":1,"issue_type":"feature","created_at":"2025-11-16T14:51:31.247147-08:00","updated_at":"2025-11-16T14:51:31.247147-08:00"} -{"id":"bd-toy3","title":"Test hook","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T18:33:39.717036-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-tggf","title":"Code Health Review Dec 2025: Technical Debt Cleanup","description":"Epic grouping technical debt identified in the Dec 16, 2025 code health review.\n\n## Overall Health Grade: B (Solid foundation, needs cleanup)\n\n### P1 (High Priority):\n- bd-74w1: Consolidate duplicate path-finding utilities\n- bd-b6xo: Remove/fix ClearDirtyIssues() race condition\n- bd-b3og: Fix TestImportBugIntegration deadlock\n\n### P2 (Medium Priority):\n- bd-05a8: Split large files (doctor.go, sync.go)\n- bd-qioh: Standardize error handling patterns\n- bd-rgyd: Split queries.go (1586 lines)\n- bd-9g1z: Fix/remove TestFindJSONLPathDefault\n\n### P3 (Low Priority):\n- bd-ork0: Add comments to 30+ ignored errors\n- bd-4nqq: Remove dead test code in info_test.go\n- bd-dhza: Reduce global state in main.go\n\n## Key Areas:\n1. Code duplication in path utilities\n2. Large monolithic files (5 files \u003e1000 lines)\n3. Global state (25+ variables, 3 deprecated)\n4. Silent error suppression (30+ instances)\n5. Test gaps and dead test code\n6. Atomicity risks in batch operations","status":"open","priority":2,"issue_type":"epic","created_at":"2025-12-16T18:18:58.115507-08:00","updated_at":"2025-12-16T18:21:50.561709-08:00"} -{"id":"bd-2ep8","title":"Update CHANGELOG.md with release notes","description":"Add meaningful release notes to CHANGELOG.md describing what changed in 0.30.7","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649053-08:00","updated_at":"2025-12-19T22:57:31.69559-08:00","closed_at":"2025-12-19T22:57:31.69559-08:00","dependencies":[{"issue_id":"bd-2ep8","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.650816-08:00","created_by":"stevey"},{"issue_id":"bd-2ep8","depends_on_id":"bd-rupw","type":"blocks","created_at":"2025-12-19T22:56:48.651136-08:00","created_by":"stevey"}]} -{"id":"bd-dp4w","title":"Test message","description":"This is a test message body","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:11:58.467876-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} -{"id":"bd-j6lr","title":"GH#402: Add --parent flag documentation to bd onboard","description":"bd onboard output is missing --parent flag for epic subtasks. Agents guess wrong syntax (--deps parent:). See GitHub issue #402.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:56.594829-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-8v2","title":"Add {{version}} to versionChanges in info.go","description":"Add new entry at TOP of versionChanges in cmd/bd/info.go with release notes from CHANGELOG.md. Must do before bump-version.sh --commit.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:00.482846-08:00","updated_at":"2025-12-18T22:45:21.465817-08:00","closed_at":"2025-12-18T22:45:21.465817-08:00","dependencies":[{"issue_id":"bd-8v2","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.496649-08:00","created_by":"daemon"},{"issue_id":"bd-8v2","depends_on_id":"bd-kyo","type":"blocks","created_at":"2025-12-18T22:43:20.69619-08:00","created_by":"daemon"}]} -{"id":"bd-qqc.9","title":"Update Homebrew formula","description":"Update the Homebrew tap with new version:\n\n```bash\n./scripts/update-homebrew.sh {{version}}\n```\n\nThis script waits for GitHub Actions to complete (~5 min), then updates the formula with new SHA256 hashes.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:35.815096-08:00","updated_at":"2025-12-18T22:51:07.863862-08:00","closed_at":"2025-12-18T22:51:07.863862-08:00","dependencies":[{"issue_id":"bd-qqc.9","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:35.816752-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.9","depends_on_id":"bd-qqc.8","type":"blocks","created_at":"2025-12-18T22:43:21.332955-08:00","created_by":"daemon"}]} -{"id":"bd-7h7","title":"bd init should stop running daemon to avoid stale cache","description":"When running bd init, any running daemon continues with stale cached data, causing bd stats and other commands to show old counts.\n\nRepro:\n1. Have daemon running with 788 issues cached\n2. Clean JSONL to 128 issues, delete db, run bd init\n3. bd stats still shows 788 (daemon cache)\n4. Must manually run bd daemon --stop\n\nFix: bd init should automatically stop any running daemon before reinitializing.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T13:26:47.117226-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-cils","title":"Work on beads-2nh: Fix gt spawn --issue to find issues in...","description":"Work on beads-2nh: Fix gt spawn --issue to find issues in rig's beads database. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:47.573854-08:00","updated_at":"2025-12-20T00:26:12.608015-08:00","closed_at":"2025-12-19T23:28:28.605343-08:00"} -{"id":"bd-qqc.12","title":"Restart daemon with {{version}}","description":"Restart the bd daemon to pick up new version:\n\n```bash\nbd daemon --stop\nbd daemon --start\nbd daemon --health # Verify Version: {{version}}\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:08:04.155448-08:00","updated_at":"2025-12-18T23:09:05.777375-08:00","closed_at":"2025-12-18T23:09:05.777375-08:00","dependencies":[{"issue_id":"bd-qqc.12","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T23:08:04.155832-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.12","depends_on_id":"bd-qqc.11","type":"blocks","created_at":"2025-12-18T23:08:19.779897-08:00","created_by":"daemon"}]} -{"id":"bd-adoe","title":"Add --hard flag to bd cleanup to permanently cull tombstones before cutoff date","description":"Currently tombstones persist for 30 days before cleanup prunes them. Need an official way to force-cull tombstones earlier than the default TTL, for scenarios like cleaning house after extended absence where resurrection from old clones is not a concern. Proposed: bd cleanup --hard --older-than N to bypass the 30-day tombstone TTL.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:17:31.064914-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} -{"id":"bd-pbh.7","title":"Update beads_mcp/__init__.py to 0.30.4","description":"Update __version__ in integrations/beads-mcp/src/beads_mcp/__init__.py:\n```python\n__version__ = \"0.30.4\"\n```\n\n\n```verify\ngrep -q '__version__ = \"0.30.4\"' integrations/beads-mcp/src/beads_mcp/__init__.py\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.005334-08:00","updated_at":"2025-12-17T21:46:46.254885-08:00","closed_at":"2025-12-17T21:46:46.254885-08:00","dependencies":[{"issue_id":"bd-pbh.7","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.005699-08:00","created_by":"daemon"}]} -{"id":"bd-401h","title":"Work on beads-7jl: Fix Windows installer file locking iss...","description":"Work on beads-7jl: Fix Windows installer file locking issue (GH#652). Close file handle before extraction in postinstall.js. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:57.873767-08:00","updated_at":"2025-12-19T23:20:05.747664-08:00","closed_at":"2025-12-19T23:20:05.747664-08:00"} -{"id":"bd-ot0w","title":"Work on beads-tip: Fix broken Claude integration link in ...","description":"Work on beads-tip: Fix broken Claude integration link in bd doctor (GH#623). Update URL that doesn't exist. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:08.429157-08:00","updated_at":"2025-12-19T23:20:39.790305-08:00","closed_at":"2025-12-19T23:20:39.790305-08:00"} -{"id":"bd-aydr.5","title":"Enhance bd doctor to suggest reset for broken states","description":"Update bd doctor to detect severely broken states and suggest reset.\n\n## Detection Criteria\nSuggest reset when:\n- Multiple unfixable errors detected\n- Corrupted JSONL that can't be repaired\n- Schema version mismatch that can't be migrated\n- Daemon state inconsistent and unkillable\n\n## Implementation\nAdd to doctor's check/fix flow:\n```go\nif unfixableErrors \u003e threshold {\n suggest('State may be too broken to fix. Consider: bd reset')\n}\n```\n\n## Output Example\n```\nāœ— Found 5 unfixable errors\n \n Your beads state may be too corrupted to repair.\n Consider running 'bd reset' to start fresh.\n (Use 'bd reset --backup' to save current state first)\n```\n\n## Notes\n- Don't auto-run reset, just suggest\n- This is lower priority, can be done in parallel with main work","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-13T08:44:55.591986+11:00","updated_at":"2025-12-13T06:24:29.561624-08:00","closed_at":"2025-12-13T10:17:23.4522+11:00","dependencies":[{"issue_id":"bd-aydr.5","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:55.59239+11:00","created_by":"daemon"}]} -{"id":"bd-n4td","title":"Add warning when staleness check errors","description":"## Problem\n\nWhen ensureDatabaseFresh() calls CheckStaleness() and it errors (corrupted metadata, permission issues, etc.), we silently proceed with potentially stale data.\n\n**Location:** cmd/bd/staleness.go:27-32\n\n**Scenarios:**\n- Corrupted metadata table\n- Database locked by another process \n- Permission issues reading JSONL file\n- Invalid last_import_time format in DB\n\n## Current Code\n\n```go\nisStale, err := autoimport.CheckStaleness(ctx, store, dbPath)\nif err \\!= nil {\n // If we can't determine staleness, allow operation to proceed\n // (better to show potentially stale data than block user)\n return nil\n}\n```\n\n## Fix\n\n```go\nisStale, err := autoimport.CheckStaleness(ctx, store, dbPath)\nif err \\!= nil {\n fmt.Fprintf(os.Stderr, \"Warning: Could not verify database freshness: %v\\n\", err)\n fmt.Fprintf(os.Stderr, \"Proceeding anyway. Data may be stale.\\n\\n\")\n return nil\n}\n```\n\n## Impact\nMedium - users should know when staleness check fails\n\n## Effort\nEasy - 5 minutes","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-11-20T20:16:34.889997-05:00","updated_at":"2025-12-17T23:13:40.531031-08:00","closed_at":"2025-12-17T19:11:12.950618-08:00","dependencies":[{"issue_id":"bd-n4td","depends_on_id":"bd-2q6d","type":"blocks","created_at":"2025-11-20T20:18:20.154723-05:00","created_by":"stevey"}]} -{"id":"bd-ykd9","title":"Add bd doctor --fix flag to automatically repair issues","description":"Implement a --fix flag for bd doctor that can automatically repair detected issues.\n\nRequirements:\n- Add --fix flag to bd doctor command\n- Show all fixable issues and prompt for confirmation before applying fixes\n- Organize fix implementations under doctor/fix/\u003ctype_of_fix\u003e.go\n- Each fix type should have its own file (e.g., doctor/fix/hooks.go, doctor/fix/sync.go)\n- Display what will be fixed and ask user to confirm (Y/n) before proceeding\n- Support fixing issues like:\n - Missing or broken git hooks\n - Sync problems with remote\n - File permission issues\n - Any other auto-repairable issues doctor detects\n\nImplementation notes:\n- Maintain separation between detection (existing doctor code) and repair (new fix code)\n- Each fix should be idempotent and safe to run multiple times\n- Provide clear output about what was fixed\n- Log any fixes that fail with actionable error messages","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-14T18:17:48.411264-08:00","updated_at":"2025-11-14T18:17:58.88609-08:00"} -{"id":"bd-kwro.3","title":"Graph Link: relates_to for knowledge graph","description":"Implement relates_to link type for loose associations.\n\nNew command:\n- bd relate \u003cid1\u003e \u003cid2\u003e - creates bidirectional relates_to link\n\nQuery support:\n- bd show \u003cid\u003e --related shows related issues\n- bd list --related-to \u003cid\u003e\n\nStorage:\n- relates_to stored as JSON array of issue IDs\n- Consider: separate junction table for efficiency at scale?\n\nThis enables 'see also' connections without blocking or hierarchy.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:30.793115-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-2oo.1","title":"Add metadata and thread_id columns to dependencies table","description":"Schema changes:\n- ALTER TABLE dependencies ADD COLUMN metadata TEXT DEFAULT '{}'\n- ALTER TABLE dependencies ADD COLUMN thread_id TEXT DEFAULT ''\n- CREATE INDEX idx_dependencies_thread ON dependencies(thread_id) WHERE thread_id != ''","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:00.468223-08:00","updated_at":"2025-12-18T02:49:10.575133-08:00","closed_at":"2025-12-18T02:49:10.575133-08:00","dependencies":[{"issue_id":"bd-2oo.1","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:00.470012-08:00","created_by":"daemon"}]} -{"id":"bd-cb64c226.10","title":"Delete server_cache_storage.go","description":"Remove the entire cache implementation file (~286 lines)","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:38.729299-07:00","updated_at":"2025-12-17T23:18:29.110716-08:00","deleted_at":"2025-12-17T23:18:29.110716-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-kwro.7","title":"Identity Configuration","description":"Implement identity system for sender field.\n\nConfiguration sources (in priority order):\n1. --identity flag on commands\n2. BEADS_IDENTITY environment variable\n3. .beads/config.json: {\"identity\": \"worker-name\"}\n4. Default: git user.name or hostname\n\nNew config file support:\n- .beads/config.json for per-repo settings\n- identity field for messaging\n\nHelper function:\n- GetIdentity() string - resolves identity from sources\n\nUpdate bd mail send to use GetIdentity() for sender field.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:02:17.603608-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-aydr.6","title":"Add unit tests for reset package","description":"Comprehensive unit tests for internal/reset package.\n\n## Test Cases\n\n### ValidateState tests\n- .beads/ exists ā†’ success\n- .beads/ missing ā†’ appropriate error\n- git dirty state detection\n\n### CountImpact tests \n- Empty .beads/ ā†’ zero counts\n- With issues ā†’ correct count (open vs closed)\n- With tombstones ā†’ correct count\n- Returns HasUncommitted correctly\n\n### Backup tests\n- Creates backup with correct timestamp format\n- Preserves all files and permissions\n- Returns correct path\n- Handles missing .beads/ gracefully\n- Errors on pre-existing backup dir\n\n### Git operation tests\n- CheckGitState detects dirty, detached, not-a-repo\n- GitRemoveBeads removes correct files\n- GitCommitReset creates commit with message\n- Operations skip gracefully when not in git repo\n\n### Reset tests (with mocks/temp dirs)\n- Soft reset removes files, calls init\n- Hard reset includes git operations\n- Dry run doesn't modify anything\n- SkipInit flag prevents re-initialization\n- Daemon killall is called\n- Backup is created when requested\n\n## Approach\n- Can start with interface definitions (TDD style)\n- Use testify for assertions\n- Create temp directories for isolation\n- Mock git operations where needed\n- Test completion depends on implementation tasks\n\n## File Location\n`internal/reset/reset_test.go`\n`internal/reset/backup_test.go`\n`internal/reset/git_test.go`","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:57.01739+11:00","updated_at":"2025-12-13T10:13:32.611698+11:00","closed_at":"2025-12-13T09:59:20.820314+11:00","dependencies":[{"issue_id":"bd-aydr.6","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:57.017813+11:00","created_by":"daemon"}]} -{"id":"bd-kwro.2","title":"Graph Link: replies_to for conversation threading","description":"Implement replies_to link type for message threading.\n\nNew command:\n- bd mail reply \u003cid\u003e -m 'Response' creates a message with replies_to set\n\nQuery support:\n- bd show \u003cid\u003e --thread shows full conversation thread\n- Thread traversal in storage layer\n\nStorage:\n- replies_to column in issues table\n- Index for efficient thread queries\n\nThis enables Reddit-style nested threads where messages reply to other messages.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:25.292728-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-cb64c226.1","title":"Performance Validation","description":"Confirm no performance regression from cache removal","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T10:50:15.126019-07:00","updated_at":"2025-12-17T23:18:29.108883-08:00","deleted_at":"2025-12-17T23:18:29.108883-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-0d5p","title":"Fix TestRunSync_Timeout failing on macOS","description":"The hooks timeout test fails because exec.CommandContext doesn't properly terminate child processes of shell scripts on macOS. The test creates a hook that runs 'sleep 60' with a 500ms timeout, but it waits the full 60 seconds.\n\nOptions to fix:\n- Use SysProcAttr{Setpgid: true} to create process group and kill the group\n- Skip test on darwin with build tag\n- Use a different approach for timeout testing\n\nLocation: internal/hooks/hooks_test.go:220-253","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T20:52:51.771217-08:00","updated_at":"2025-12-17T23:13:40.532688-08:00","closed_at":"2025-12-17T17:23:55.678799-08:00"} -{"id":"bd-cbed9619.5","title":"Add content-addressable identity to Issue type","description":"**Summary:** Added content-addressable identity to Issue type by implementing a ContentHash field that generates a unique SHA256 fingerprint based on semantic issue content. This resolves issue identification challenges when multiple system instances create issues with identical IDs but different contents.\n\n**Key Decisions:**\n- Use SHA256 for content hashing\n- Hash excludes ID and timestamps\n- Compute hash automatically at creation/import time\n- Add database column for hash storage\n\n**Resolution:** Successfully implemented a deterministic content hashing mechanism that enables reliable issue identification across distributed systems, improving data integrity and collision detection.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:36:44.914967-07:00","updated_at":"2025-12-17T23:18:29.112933-08:00","deleted_at":"2025-12-17T23:18:29.112933-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-nl2","title":"No logging/debugging for tombstone resurrection events","description":"Per the design document bd-zvg Open Question 1: Should resurrection log a warning? Recommendation was Yes. Currently, when an expired tombstone loses to a live issue (resurrection), there is no logging or debugging output. This makes it hard to understand why an issue reappeared. Recommendation: Add optional debug logging when resurrection occurs, e.g., Issue bd-abc resurrected (tombstone expired). Files: internal/merge/merge.go:359-366, 371-378, 400-405, 410-415","status":"open","priority":4,"issue_type":"feature","created_at":"2025-12-05T16:36:52.27525-08:00","updated_at":"2025-12-05T16:36:52.27525-08:00"} -{"id":"bd-fgw3","title":"Update local installation","description":"Run install script or brew upgrade to get new version locally: curl -fsSL .../install.sh | bash","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:05.052016-08:00","updated_at":"2025-12-20T00:25:52.805029-08:00","closed_at":"2025-12-20T00:25:52.805029-08:00","dependencies":[{"issue_id":"bd-fgw3","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.248427-08:00","created_by":"daemon"},{"issue_id":"bd-fgw3","depends_on_id":"bd-si4g","type":"blocks","created_at":"2025-12-19T22:56:23.497325-08:00","created_by":"daemon"}]} -{"id":"bd-411u","title":"Document BEADS_DIR pattern for multi-agent workspaces (Gas Town)","description":"Gas Town and similar multi-agent systems need to configure separate beads databases per workspace/rig, distinct from any project-level beads.\n\n## Use Case\n\nIn Gas Town:\n- Each 'rig' (managed project) has multiple agents (polecats, refinery, witness)\n- All agents in a rig should share a single beads database at the rig level\n- This should be separate from any .beads/ the project itself uses\n- The BEADS_DIR env var enables this\n\n## Documentation Needed\n\n1. Add a section to docs explaining BEADS_DIR for multi-agent setups\n2. Example: setting BEADS_DIR in agent startup scripts/hooks\n3. Clarify interaction with project-level .beads/ (BEADS_DIR takes precedence)\n\n## Current Support\n\nAlready implemented in internal/beads/beads.go:FindDatabasePath():\n- BEADS_DIR env var is checked first (preferred)\n- BEADS_DB env var still supported (deprecated)\n- Falls back to .beads/ search in tree\n\nJust needs documentation for the multi-agent workspace pattern.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-15T22:08:22.158027-08:00","updated_at":"2025-12-15T22:08:22.158027-08:00"} -{"id":"bd-7bbc4e6a","title":"Add MCP server functions for repair commands","description":"**Summary:** Added MCP server repair functions for agent dependency management, system validation, and pollution detection. Implemented across BdClientBase, BdCliClient, and daemon clients to enhance system diagnostics and self-healing capabilities.\n\n**Key Decisions:** \n- Expose repair_deps(), detect_pollution(), validate() via MCP server\n- Create abstract method stubs with fallback to CLI execution\n- Use @mcp.tool decorators for function registration\n\n**Resolution:** Successfully implemented comprehensive repair command infrastructure, enabling more robust system health monitoring and automated remediation with full CLI and daemon support.","notes":"Implemented all three MCP server functions:\n\n1. **repair_deps(fix=False)** - Find/fix orphaned dependencies\n2. **detect_pollution(clean=False)** - Detect/clean test issues \n3. **validate(checks=None, fix_all=False)** - Run comprehensive health checks\n\nChanges:\n- Added abstract methods to BdClientBase\n- Implemented in BdCliClient (CLI execution)\n- Added NotImplementedError stubs in BdDaemonClient (falls back to CLI)\n- Created wrapper functions in tools.py\n- Registered @mcp.tool decorators in server.py\n\nAll commands tested and working with --no-daemon flag.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-28T19:37:55.72639-07:00","updated_at":"2025-12-16T01:08:11.983953-08:00","closed_at":"2025-11-07T19:38:12.152437-08:00"} -{"id":"bd-bgr","title":"Test stdin 2","description":"Description from stdin test\n","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T17:28:05.41434-08:00","updated_at":"2025-12-17T17:28:33.833288-08:00","closed_at":"2025-12-17T17:28:33.833288-08:00"} -{"id":"bd-pbh.17","title":"Install 0.30.4 Go binary locally","description":"Rebuild and install the Go binary:\n```bash\ngo install ./cmd/bd\n# OR\nmake install\n```\n\nVerify:\n```bash\nbd --version\n```\n\n\n```verify\nbd --version 2\u003e\u00261 | grep -q '0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.108597-08:00","updated_at":"2025-12-17T21:46:46.352702-08:00","closed_at":"2025-12-17T21:46:46.352702-08:00","dependencies":[{"issue_id":"bd-pbh.17","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.108917-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.17","depends_on_id":"bd-pbh.13","type":"blocks","created_at":"2025-12-17T21:19:11.322091-08:00","created_by":"daemon"}]} -{"id":"bd-fa2h","title":"šŸ¤ HANDOFF: v0.31.0 released, molecules discussion","description":"Session completed 0.31.0 release and had important molecules discussion.\n\n## Completed\n- v0.31.0 released (deferred status, audit trail, directory labels, etc.)\n- Fixed lint issues, hook version markers, codesigning\n- All CI green, artifacts verified\n\n## Filed Issues\n- bd-usro: Rename template instantiate ā†’ bd mol bond\n- bd-y8bj: Auto-detect identity for bd mail (P1 bug)\n- gt-975: Molecule execution support for polecats/crew\n- gt-976: Crew lifecycle support in Deacon\n\n## Key Insight\nMolecules are the future - TodoWrite is ephemeral, molecules are persistent institutional memory on the world chain. I tried to use TodoWrite for version bump and missed steps (codesigning, MCP verification). Molecules would have caught this.\n\n## Next Steps\n- bd mol bond implementation is priority\n- Max has gt-976 for crew lifecycle (enables automated refresh mid-molecule)\n\nCheck bd ready and gt-975/976 status.","status":"open","priority":2,"issue_type":"message","created_at":"2025-12-20T17:23:09.889562-08:00","updated_at":"2025-12-20T17:23:09.889562-08:00"} -{"id":"bd-y8tn","title":"Test Molecule","description":"A test molecule","status":"closed","priority":2,"issue_type":"molecule","created_at":"2025-12-19T18:30:24.491279-08:00","updated_at":"2025-12-19T18:31:12.49898-08:00","closed_at":"2025-12-19T18:31:12.49898-08:00"} -{"id":"bd-pe4s","title":"JSON test issue","description":"Line 1\nLine 2\nLine 3","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T16:14:36.969074-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-yck","title":"Fix checkExistingBeadsData to be worktree-aware","description":"The checkExistingBeadsData function in cmd/bd/init.go checks for .beads in the current working directory, but for worktrees it should check the main repository root instead. This prevents proper worktree compatibility.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-07T16:48:32.082776345-07:00","updated_at":"2025-12-07T16:48:32.082776345-07:00"} -{"id":"bd-sumr","title":"Merge: bd-t4sb","description":"branch: polecat/capable\ntarget: main\nsource_issue: bd-t4sb\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:22:21.343724-08:00","updated_at":"2025-12-19T23:22:21.343724-08:00"} -{"id":"bd-iq7n","title":"Audit and fix JSONL filename mismatches across all repo clones","description":"## Problem\n\nMultiple clones of repos are configured with different JSONL filenames (issues.jsonl vs beads.jsonl), causing:\n1. JSONL files to be resurrected after deletion (one clone pushes issues.jsonl, another pushes beads.jsonl)\n2. Agents unable to see issues filed by other agents after sync\n3. Merge conflicts and data inconsistencies\n\n## Root Cause\n\nWhen repos were \"bd doctored\" or initialized at different times, some got issues.jsonl (old default) and others got beads.jsonl (Beads repo specific). These clones push their respective files, creating duplicates.\n\n## Task\n\nScan all repo clones under ~/src/ (1-2 levels deep) and standardize their JSONL configuration.\n\n### Step 1: Find all beads-enabled repos\n\n```bash\n# Find all directories named 'beads' at levels 1-2 under ~/src/\nfind ~/src -maxdepth 2 -type d -name beads\n```\n\n### Step 2: For each repo found, check configuration\n\nFor each directory from Step 1, check:\n- Does `.beads/metadata.json` exist?\n- What is the `jsonl_export` value?\n- What JSONL files actually exist in `.beads/`?\n- Are there multiple JSONL files (problem!)?\n\n### Step 3: Create audit report\n\nGenerate a report showing:\n```\nRepo Path | Config | Actual Files | Status\n----------------------------------- | ------------- | ---------------------- | --------\n~/src/beads | beads.jsonl | beads.jsonl | OK\n~/src/dave/beads | issues.jsonl | issues.jsonl | MISMATCH\n~/src/emma/beads | issues.jsonl | issues.jsonl, beads.jsonl | DUPLICATE!\n```\n\n### Step 4: Determine canonical name for each repo\n\nFor repos that are the SAME git repository (check `git remote -v`):\n- Group them together\n- Determine which JSONL filename should be canonical (majority wins, or beads.jsonl for the beads repo itself)\n- List which clones need to be updated\n\n### Step 5: Generate fix script\n\nCreate a script that for each mismatched clone:\n1. Updates `.beads/metadata.json` to use the canonical name\n2. If JSONL file needs renaming: `git mv .beads/old.jsonl .beads/new.jsonl`\n3. Removes any duplicate JSONL files: `git rm .beads/duplicate.jsonl`\n4. Commits the change\n5. Syncs: `bd sync`\n\n### Expected Output\n\n1. Audit report showing all repos and their config status\n2. List of repos grouped by git remote (same repository)\n3. Fix script or manual instructions for standardizing each repo\n4. Verification that after fixes, all clones of the same repo use the same JSONL filename\n\n### Edge Cases\n\n- Handle repos without metadata.json (use default discovery)\n- Handle repos with no git remote (standalone/local)\n- Handle repos that are not git repositories\n- Don't modify repos with uncommitted changes (warn instead)\n\n### Success Criteria\n\n- All clones of the same git repository use the same JSONL filename\n- No duplicate JSONL files in any repo\n- All configurations documented in metadata.json\n- bd doctor passes on all repos","status":"closed","issue_type":"task","created_at":"2025-11-21T23:58:35.044762-08:00","updated_at":"2025-12-17T23:13:40.531403-08:00","closed_at":"2025-12-17T16:50:59.510972-08:00"} -{"id":"bd-au0.7","title":"Audit and standardize JSON output across all commands","description":"Ensure consistent JSON format and error handling when --json flag is used.\n\n**Scope:**\n1. Verify all commands respect --json flag\n2. Standardize success response format\n3. Standardize error response format\n4. Document JSON schemas\n\n**Commands to audit:**\n- Core CRUD: create, update, delete, show, list, search āœ“\n- Queries: ready, blocked, stale, count, stats, status\n- Deps: dep add/remove/tree/cycles\n- Labels: label commands\n- Comments: comments add/list/delete\n- Epics: epic status/close-eligible\n- Export/import: already support --json āœ“\n\n**Testing:**\n- Success cases return valid JSON\n- Error cases return valid JSON (not plain text)\n- Consistent field naming (snake_case vs camelCase)\n- Array vs object wrapping consistency","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-21T21:07:35.304424-05:00","updated_at":"2025-11-21T21:07:35.304424-05:00","dependencies":[{"issue_id":"bd-au0.7","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:35.305663-05:00","created_by":"daemon"}]} -{"id":"bd-05a8","title":"Split large cmd/bd files: doctor.go (2948 lines), sync.go (2121 lines)","description":"Code health review found several oversized files:\n\n1. doctor.go - 2948 lines, 48 functions mixed together\n - Should split into doctor/checks/*.go for individual diagnostics\n - applyFixes() and previewFixes() are nearly identical\n\n2. sync.go - 2121 lines\n - ZFC (Zero Flush Check) logic embedded inline (lines 213-247)\n - Multiple mode handlers should be extracted\n\n3. init.go - 1732 lines\n4. compact.go - 1097 lines\n5. show.go - 1069 lines\n\nRecommendation: Extract into focused sub-packages or split into logical files.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-16T18:17:18.169927-08:00","updated_at":"2025-12-16T18:17:18.169927-08:00","dependencies":[{"issue_id":"bd-05a8","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.846503-08:00","created_by":"daemon"}]} -{"id":"bd-1slh","title":"Investigate charmbracelet-based TUI for beads","description":"Now that we've merged the create-form command (PR #603) which uses charmbracelet/huh, investigate whether beads should have a more comprehensive TUI.\n\nConsiderations:\n- Should this be in core or a separate binary (bd-tui)?\n- What functionality would benefit from a TUI? (list view, issue details, search, bulk operations)\n- Plugin/extension architecture vs build tags vs separate binary\n- Dependency cost vs user experience tradeoff\n- Target audience: humans who want interactive workflows vs CLI/scripting users\n\nRelated: PR #603 added charmbracelet/huh dependency for create-form command.","status":"open","priority":3,"issue_type":"feature","created_at":"2025-12-17T14:20:51.503563-08:00","updated_at":"2025-12-17T14:20:51.503563-08:00"} -{"id":"bd-cbed9619.4","title":"Make DetectCollisions read-only (separate detection from modification)","description":"**Summary:** The project restructured the collision detection process in the database to separate read-only detection from state modification, eliminating race conditions and improving system reliability. This was achieved by introducing a two-phase approach: first detecting potential collisions, then applying resolution separately.\n\n**Key Decisions:**\n- Create read-only DetectCollisions method\n- Add RenameDetail to track potential issue renames\n- Implement atomic ApplyCollisionResolution function\n- Separate detection logic from database modification\n\n**Resolution:** The refactoring creates a more robust, composable collision handling mechanism that prevents partial failures and maintains database consistency during complex issue import scenarios.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:37:09.652326-07:00","updated_at":"2025-12-17T23:18:29.112637-08:00","dependencies":[{"issue_id":"bd-cbed9619.4","depends_on_id":"bd-cbed9619.5","type":"blocks","created_at":"2025-10-28T18:39:28.285653-07:00","created_by":"daemon"}],"deleted_at":"2025-12-17T23:18:29.112637-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-au0.5","title":"Add date and priority filters to bd search","description":"Add filter parity with bd list for consistent querying.\n\n**Missing filters to add:**\n- --priority, --priority-min, --priority-max\n- --created-after, --created-before\n- --updated-after, --updated-before\n- --closed-after, --closed-before\n- --empty-description, --no-assignee, --no-labels\n- --desc-contains, --notes-contains\n\n**Files to modify:**\n- cmd/bd/search.go\n- internal/rpc/protocol.go (SearchArgs)\n- internal/storage/storage.go (Search method)\n\n**Testing:**\n- All filter combinations\n- Date format parsing\n- Daemon and direct mode","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-21T21:07:05.496726-05:00","updated_at":"2025-11-21T21:07:05.496726-05:00","dependencies":[{"issue_id":"bd-au0.5","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:05.497762-05:00","created_by":"daemon"}]} -{"id":"bd-49kw","title":"Workaround for FastMCP outputSchema bug in Claude Code","description":"The beads MCP server (v0.23.1) successfully connects to Claude Code, but all tools fail to load with a schema validation error due to a bug in FastMCP 2.13.1.\n\nError: \"Invalid literal value, expected \\\"object\\\"\" in outputSchema.\n\nRoot Cause: FastMCP generates outputSchema with $ref at root level without \"type\": \"object\" for self-referential models (Issue).\n\nWorkaround: Use slash commands (/beads:ready) or wait for FastMCP fix.\n","status":"open","priority":1,"issue_type":"bug","created_at":"2025-11-20T18:55:39.041831-05:00","updated_at":"2025-11-20T18:55:39.041831-05:00"} -{"id":"bd-t4sb","title":"Work on beads-d8h: Fix prefix mismatch false positive wit...","description":"Work on beads-d8h: Fix prefix mismatch false positive with multi-hyphen prefixes like 'asianops-audit-' (GH#422). When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:19.545069-08:00","updated_at":"2025-12-20T00:26:12.606657-08:00","closed_at":"2025-12-19T23:21:45.471711-08:00"} -{"id":"bd-qqc.7","title":"Push release v{{version}} to remote","description":"Push the commit and tag:\n\n```bash\ngit push \u0026\u0026 git push --tags\n```\n\nVerify on GitHub that the tag appears in releases.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T13:00:26.933082-08:00","updated_at":"2025-12-18T23:34:18.630538-08:00","closed_at":"2025-12-18T22:41:41.882956-08:00","dependencies":[{"issue_id":"bd-qqc.7","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T13:00:26.933687-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.7","depends_on_id":"bd-qqc.6","type":"blocks","created_at":"2025-12-18T13:01:12.711161-08:00","created_by":"stevey"}]} -{"id":"bd-kwro.4","title":"Graph Link: duplicates for deduplication","description":"Implement duplicates link type for marking issues as duplicates.\n\nNew command:\n- bd duplicate \u003cid\u003e --of \u003ccanonical\u003e - marks id as duplicate of canonical\n- Auto-closes the duplicate issue\n\nQuery support:\n- bd show \u003cid\u003e shows 'Duplicate of: \u003ccanonical\u003e'\n- bd list --duplicates shows all duplicate pairs\n\nStorage:\n- duplicates column pointing to canonical issue ID\n\nEssential for large issue databases with many similar reports.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:36.257223-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-6rl","title":"Merge3Way public API does not expose TTL parameter","description":"The public Merge3Way() function in merge.go does not allow callers to configure the tombstone TTL. It hard-codes the default via merge3WayWithTTL(). While merge3WayWithTTL() exists, it is unexported (lowercase). This means the CLI and tests cannot configure TTL at merge time. Use cases: testing with different TTL values, per-repository TTL configuration, debugging with short TTL, supporting --ttl flag in bd merge command (mentioned in design doc bd-zvg). Recommendation: Export Merge3WayWithTTL (rename to uppercase). Files: internal/merge/merge.go:77, 292-298","status":"open","priority":3,"issue_type":"feature","created_at":"2025-12-05T16:36:15.756814-08:00","updated_at":"2025-12-05T16:36:15.756814-08:00"} -{"id":"bd-c83r","title":"Prevent multiple daemons from running on the same repo","description":"Multiple bd daemons running on the same repo clone causes race conditions and data corruption risks.\n\n**Problem:**\n- Nothing prevents spawning multiple daemons for the same repository\n- Multiple daemons watching the same files can conflict during sync operations\n- Observed: 4 daemons running simultaneously caused sync race condition\n\n**Solution:**\nImplement daemon singleton enforcement per repo:\n1. Use a lock file (e.g., .beads/.daemon.lock) with PID\n2. On daemon start, check if lock exists and process is alive\n3. If stale lock (dead PID), clean up and acquire lock\n4. If active daemon exists, either:\n - Exit with message 'daemon already running (PID xxx)'\n - Or offer --replace flag to kill existing and take over\n5. Release lock on graceful shutdown\n\n**Edge cases to handle:**\n- Daemon crashes without releasing lock (stale PID detection)\n- Multiple repos in same directory tree (each repo gets own lock)\n- Race between two daemons starting simultaneously (atomic lock acquisition)","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-13T06:37:23.377131-08:00","updated_at":"2025-12-16T01:14:49.50347-08:00","closed_at":"2025-12-14T17:34:14.990077-08:00"} -{"id":"bd-fi05","title":"bd sync fails with orphaned issues and duplicate ID conflict","description":"After fixing the deleted_at TEXT column scanning bug (commit 18b1eb2), bd sync still fails with two issues:\n\n1. Orphan Detection Warning: 12 orphaned child issues whose parents no longer exist (bd-cb64c226.* and bd-cbed9619.*)\n\n2. Import Failure: UNIQUE constraint failed for bd-360 - this tombstone exists in both DB and JSONL\n\nError: \"Import failed: error creating depth-0 issues: bulk insert issues: failed to insert issue bd-360: sqlite3: constraint failed: UNIQUE constraint failed: issues.id\"\n\nFix options:\n- Delete orphaned child issues with bd delete\n- Resolve bd-360 duplicate (in deletions.jsonl vs tombstone in DB)\n- Reset sync branch: git branch -f beads-sync main \u0026\u0026 git push --force-with-lease origin beads-sync","notes":"Fixed tombstone constraint violation bug. When deleting closed issues, the CHECK constraint (status = 'closed') = (closed_at IS NOT NULL) was violated because CreateTombstone didn't clear closed_at. Fix: set closed_at = NULL in tombstone creation SQL.\n\nThe sync data corruption (orphaned issues in beads-sync branch) requires manual cleanup: reset sync branch with 'git branch -f beads-sync main \u0026\u0026 git push --force-with-lease origin beads-sync'","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-13T07:14:33.831346-08:00","updated_at":"2025-12-13T10:50:48.545465-08:00","closed_at":"2025-12-13T07:30:33.843986-08:00"} -{"id":"bd-9cdc","title":"Update docs for import bug fix","description":"Update AGENTS.md, README.md, TROUBLESHOOTING.md with import.orphan_handling config documentation. Document resurrection behavior, tombstones, config modes. Add troubleshooting section for import failures with deleted parents.","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-04T12:32:30.770415-08:00","updated_at":"2025-11-04T12:32:30.770415-08:00"} -{"id":"bd-y4vz","title":"Work on beads-eub: Consolidated context tool for MCP serv...","description":"Work on beads-eub: Consolidated context tool for MCP server (GH#636). Merge set_context, where_am_i, init into single 'context' tool. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:58.527144-08:00","updated_at":"2025-12-20T00:26:12.607357-08:00","closed_at":"2025-12-19T23:31:11.906952-08:00"} -{"id":"bd-rgyd","title":"Split internal/storage/sqlite/queries.go (1586 lines)","description":"Code health review found queries.go is too large at 1586 lines with:\n\n- Issue scanning logic duplicated between transaction.go and queries.go\n- Timestamp defensive fixes duplicated in CreateIssue, CreateIssues, batch_ops.go\n- Multiple similar patterns that should be consolidated\n\nAlso: transaction.go at 1284 lines, dependencies.go at 893 lines\n\nRecommendation:\n1. Extract common scanning into shared function\n2. Consolidate timestamp defensive fixes\n3. Split queries.go by domain (CRUD, search, batch, events)","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-16T18:17:23.85869-08:00","updated_at":"2025-12-16T18:17:23.85869-08:00","dependencies":[{"issue_id":"bd-rgyd","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.062038-08:00","created_by":"daemon"}]} -{"id":"bd-90v","title":"bd prime: AI context loading and Claude Code integration","description":"Implement `bd prime` command and Claude Code hooks for context recovery. Hooks work with BOTH MCP server and CLI approaches - they solve the context memory problem (keeping bd workflow fresh after compaction) not the tool access problem (MCP vs CLI).","status":"open","priority":2,"issue_type":"epic","created_at":"2025-11-11T23:31:12.119012-08:00","updated_at":"2025-11-12T00:11:07.743189-08:00"} -{"id":"bd-kwro.11","title":"Documentation for messaging and graph links","description":"Document all new features.\n\nFiles to update:\n- README.md - brief mention of messaging capability\n- AGENTS.md - update for AI agents using bd mail\n- docs/messaging.md (new) - full messaging reference\n- docs/graph-links.md (new) - graph link reference\n- CHANGELOG.md - v0.30.2 release notes\n\nTopics to cover:\n- Mail commands with examples\n- Graph link types and use cases\n- Identity configuration\n- Hooks setup for notifications\n- Migration notes","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T03:02:39.548518-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-s0qf","title":"GH#405: Fix prefix parsing with hyphens - multi-hyphen prefixes parsed incorrectly","description":"Fixed: ExtractIssuePrefix was falling back to first-hyphen for word-like suffixes, breaking multi-hyphen prefixes like 'hacker-news' and 'me-py-toolkit'.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:13:56.951359-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-r46","title":"Support --reason flag in daemon mode for reopen command","description":"The reopen.go command has a TODO at line 61 to add reason as a comment once RPC supports AddComment. Currently --reason flag is ignored in daemon mode with a warning.","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-21T18:55:10.773626-05:00","updated_at":"2025-11-21T18:55:10.773626-05:00"} -{"id":"bd-indn","title":"bd template commands fail with daemon mode","description":"The `bd template show` and `bd template instantiate` commands fail with 'Error loading template: no database connection' when daemon is running.\n\n**Reproduction:**\n```bash\nbd daemon --start\nbd template show bd-qqc # Error: no database connection\nbd template show bd-qqc --no-daemon # Works\n```\n\n**Expected:** Template commands should work with daemon like other commands.\n\n**Workaround:** Use `--no-daemon` flag.\n\n**Location:** Likely in cmd/bd/template.go - daemon RPC path not implemented for template operations.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-18T22:57:35.16596-08:00","updated_at":"2025-12-18T22:57:35.16596-08:00"} -{"id":"bd-jgxi","title":"Auto-migrate database on CLI version bump","description":"When CLI is upgraded (e.g., 0.24.0 ā†’ 0.24.1), database version becomes stale. Add auto-migration in PersistentPreRun or daemon startup. Check dbVersion != CLIVersion and run bd migrate automatically. Fixes recurring UX issue where bd doctor shows version mismatch after every CLI upgrade.","status":"closed","issue_type":"feature","created_at":"2025-11-21T23:16:09.004619-08:00","updated_at":"2025-12-17T23:13:40.535453-08:00","closed_at":"2025-12-17T17:15:43.605762-08:00","dependencies":[{"issue_id":"bd-jgxi","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:09.005513-08:00","created_by":"daemon"}]} -{"id":"bd-j3il","title":"Add bd reset command for clean slate restart","description":"Implement a command to reset beads to a clean starting state.\n\n**Context:** GitHub issue #479 - users sometimes get beads into an invalid state after updates, and there's no clean way to start fresh. The git backup/restore mechanism that protects against accidental deletion also makes it hard to intentionally reset.\n\n**Current workaround** (from maphew):\n```bash\nbd daemons killall\ngit rm .beads/*.jsonl\ngit commit -m 'remove old issues'\nrm .beads/*\nbd init\nbd onboard\n```\n\n**Desired:** A proper `bd reset` command that handles this cleanly and safely.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-13T08:41:34.956552+11:00","updated_at":"2025-12-13T08:43:49.970591+11:00","closed_at":"2025-12-13T08:43:49.970591+11:00"} -{"id":"bd-hw3w","title":"Update info.go versionChanges","description":"Add entry to versionChanges in cmd/bd/info.go with agent-actionable changes for {{version}}","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:01.016558-08:00","updated_at":"2025-12-20T01:23:50.3879-08:00","closed_at":"2025-12-20T01:23:50.3879-08:00","dependencies":[{"issue_id":"bd-hw3w","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:14.941855-08:00","created_by":"daemon"},{"issue_id":"bd-hw3w","depends_on_id":"bd-czss","type":"blocks","created_at":"2025-12-19T22:56:23.219257-08:00","created_by":"daemon"}]} -{"id":"bd-pbh.11","title":"Commit changes and create v0.30.4 tag","description":"```bash\ngit add -A\ngit commit -m \"chore: Bump version to 0.30.4\"\ngit tag -a v0.30.4 -m \"Release v0.30.4\"\n```\n\n\n```verify\ngit describe --tags --exact-match HEAD 2\u003e/dev/null | grep -q 'v0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.056575-08:00","updated_at":"2025-12-17T21:46:46.292166-08:00","closed_at":"2025-12-17T21:46:46.292166-08:00","dependencies":[{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.056934-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh.10","type":"blocks","created_at":"2025-12-17T21:19:11.234175-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh.2","type":"blocks","created_at":"2025-12-17T21:19:11.245316-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh.3","type":"blocks","created_at":"2025-12-17T21:19:11.255362-08:00","created_by":"daemon"}]} -{"id":"bd-uutv","title":"Work on beads-rs0: Namepool configuration for themed pole...","description":"Work on beads-rs0: Namepool configuration for themed polecat names. See bd show beads-rs0 for full details.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T21:49:48.129778-08:00","updated_at":"2025-12-19T21:59:25.565894-08:00","closed_at":"2025-12-19T21:59:25.565894-08:00"} -{"id":"bd-6fe4622f","title":"Remove unreachable utility functions","description":"Several small utility functions are unreachable:\n\nFiles to clean:\n1. `internal/storage/sqlite/hash.go` - `computeIssueContentHash` (line 17)\n - Check if entire file can be deleted if only contains this function\n\n2. `internal/config/config.go` - `FileUsed` (line 151)\n - Delete unused config helper\n\n3. `cmd/bd/git_sync_test.go` - `verifyIssueOpen` (line 300)\n - Delete dead test helper\n\n4. `internal/compact/haiku.go` - `HaikuClient.SummarizeTier2` (line 81)\n - Tier 2 summarization not implemented\n - Options: implement feature OR delete method\n\nImpact: Removes 50-100 LOC depending on decisions","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-28T16:20:02.434573-07:00","updated_at":"2025-12-17T22:58:34.563993-08:00","closed_at":"2025-12-17T22:58:34.563993-08:00"} -{"id":"bd-qqc.4","title":"Run tests and verify build","description":"Run the test suite to verify nothing is broken:\n\n```bash\n./scripts/test.sh\n```\n\nOr manually:\n```bash\ngo build ./cmd/bd/...\ngo test ./...\n```\n\nFix any failures before proceeding.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:52.308314-08:00","updated_at":"2025-12-18T23:34:18.631671-08:00","closed_at":"2025-12-18T22:41:41.856318-08:00","dependencies":[{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:52.308943-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc.1","type":"blocks","created_at":"2025-12-18T13:00:40.62142-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc.2","type":"blocks","created_at":"2025-12-18T13:00:45.820132-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc.3","type":"blocks","created_at":"2025-12-18T13:00:51.014568-08:00","created_by":"stevey"}]} -{"id":"bd-kwro","title":"Beads Messaging \u0026 Knowledge Graph (v0.30.2)","description":"Add messaging semantics and extended graph links to Beads, enabling it to serve as\nthe universal substrate for knowledge work - issues, messages, documents, and threads\nas nodes in a queryable graph.\n\n## Motivation\n\nGas Town (GGT) needs inter-agent communication. Rather than a separate mail system,\ncollapse messaging into Beads - one system, one sync, one query interface, all in git.\n\nThis also positions Beads as a foundation for:\n- Company-wide issue tracking (like Notion)\n- Threaded conversations (like Reddit/Slack)\n- Knowledge graphs with loose associations\n- Arbitrary workflow UIs built on top\n\n## New Issue Type\n\n**message** - ephemeral communication between workers\n- sender: who sent it\n- assignee: recipient\n- priority: P0 (urgent) to P4 (routine)\n- status: open (unread) -\u003e closed (read)\n- ephemeral: true = can be bulk-deleted after swarm\n\n## New Graph Links\n\n**replies_to** - conversation threading\n- Messages reply to messages\n- Enables Reddit-style nested threads\n- Different from parent_id (not hierarchy, its conversation flow)\n\n**relates_to** - loose see also associations\n- Bidirectional knowledge graph edges\n- Not blocking, not hierarchical, just related\n- Enables discovery and traversal\n\n**duplicates** - deduplication at scale\n- Mark issue B as duplicate of canonical issue A\n- Close B, link to A\n- Essential for large issue databases\n\n**supersedes** - version chains\n- Design Doc v2 supersedes Design Doc v1\n- Track evolution of artifacts\n\n## New Fields (optional, any issue type)\n\n- sender (string) - who created this (for messages)\n- ephemeral (boolean) - can be bulk-deleted when closed\n\n## New Commands\n\nMessaging:\n- bd mail send \u003crecipient\u003e -s Subject -m Body\n- bd mail inbox (list open messages for me)\n- bd mail read \u003cid\u003e (show message content)\n- bd mail ack \u003cid\u003e (mark as read/close)\n- bd mail reply \u003cid\u003e -m Response (reply to thread)\n\nGraph links:\n- bd relate \u003cid1\u003e \u003cid2\u003e (create relates_to link)\n- bd duplicate \u003cid\u003e --of \u003ccanonical\u003e (mark as duplicate)\n- bd supersede \u003cid\u003e --with \u003cnew\u003e (mark superseded)\n\nCleanup:\n- bd cleanup --ephemeral (delete closed ephemeral issues)\n\n## Identity Configuration\n\nWorkers need identity for sender field:\n- BEADS_IDENTITY env var\n- Or .beads/config.json: identity field\n\n## Hooks (for GGT integration)\n\nBeads as platform - extensible without knowing about GGT.\nHook files in .beads/hooks/:\n- on_create (runs after bd create)\n- on_update (runs after bd update)\n- on_close (runs after bd close)\n- on_message (runs after bd mail send)\n\nGGT registers hooks to notify daemons of new messages.\n\n## Schema Changes (Migration Required)\n\nAdd to issue schema:\n- type: message (new valid type)\n- sender: string (optional)\n- ephemeral: boolean (optional)\n- replies_to: string (issue ID, optional)\n- relates_to: []string (issue IDs, optional)\n- duplicates: string (canonical issue ID, optional)\n- superseded_by: string (new issue ID, optional)\n\nMigration adds fields as optional - existing beads unchanged.\n\n## Success Criteria\n\n1. bd mail send/inbox/read/ack/reply work end-to-end\n2. replies_to creates proper thread structure\n3. relates_to, duplicates, supersedes links queryable\n4. Hooks fire on create/update/close/message\n5. Identity configurable via env or config\n6. Migration preserves all existing data\n7. All new features have tests","status":"tombstone","issue_type":"epic","created_at":"2025-12-16T03:00:53.912223-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"epic"} -{"id":"bd-vgi5","title":"Push version bump to GitHub","description":"git push origin main - triggers CI but no release yet.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:05.363604-08:00","updated_at":"2025-12-18T22:46:57.50777-08:00","closed_at":"2025-12-18T22:46:57.50777-08:00","dependencies":[{"issue_id":"bd-vgi5","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.87736-08:00","created_by":"daemon"},{"issue_id":"bd-vgi5","depends_on_id":"bd-3ggb","type":"blocks","created_at":"2025-12-18T22:43:21.078208-08:00","created_by":"daemon"}]} -{"id":"bd-haze","title":"Fix beads-9yc: pinned column missing from schema. gt mail...","description":"Fix beads-9yc: pinned column missing from schema. gt mail send fails because some beads DBs lack the pinned column. Add migration to ensure it exists.","status":"in_progress","priority":2,"issue_type":"task","created_at":"2025-12-19T15:05:33.394801-08:00","updated_at":"2025-12-19T15:05:33.524491-08:00"} -{"id":"bd-qqc.11","title":"Update go install bd to {{version}}","description":"Rebuild and install bd to ~/go/bin:\n\n```bash\ngo install ./cmd/bd\n~/go/bin/bd version # Verify shows {{version}}\n```\n\nNote: If ~/go/bin is in PATH before /opt/homebrew/bin, this is the version that runs by default.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:07:55.838013-08:00","updated_at":"2025-12-18T23:09:05.775582-08:00","closed_at":"2025-12-18T23:09:05.775582-08:00","dependencies":[{"issue_id":"bd-qqc.11","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T23:07:55.838432-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.11","depends_on_id":"bd-qqc.10","type":"blocks","created_at":"2025-12-18T23:08:19.629947-08:00","created_by":"daemon"}]} -{"id":"bd-z8a6","title":"bd delete --from-file should add deleted issues to deletions manifest","description":"When using bd delete --from-file to bulk delete issues, the deleted issue IDs are not being added to the deletions.jsonl manifest.\n\nThis causes those issues to be resurrected during bd sync when git history scanning finds them in old commits.\n\nExpected: All deleted issues should be added to deletions.jsonl so they wont be reimported from git history.\n\nWorkaround: Manually add deletion records to deletions.jsonl.","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T01:48:14.099855-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-au0.8","title":"Improve clean vs cleanup command naming/documentation","description":"Clarify the difference between bd clean and bd cleanup to reduce user confusion.\n\n**Current state:**\n- bd clean: Remove temporary artifacts (.beads/bd.sock, logs, etc.)\n- bd cleanup: Delete old closed issues from database\n\n**Options:**\n1. Rename for clarity:\n - bd clean ā†’ bd clean-temp\n - bd cleanup ā†’ bd cleanup-issues\n \n2. Keep names but improve help text and documentation\n\n3. Add prominent warnings in help output\n\n**Preferred approach:** Option 2 (improve documentation)\n- Update short/long descriptions in commands\n- Add examples to help text\n- Update README.md\n- Add cross-references in help output\n\n**Files to modify:**\n- cmd/bd/clean.go\n- cmd/bd/cleanup.go\n- README.md or ADVANCED.md","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-21T21:07:49.960534-05:00","updated_at":"2025-11-21T21:07:49.960534-05:00","dependencies":[{"issue_id":"bd-au0.8","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:49.962743-05:00","created_by":"daemon"}]} -{"id":"bd-pbh.15","title":"Monitor npm publish","description":"Watch the npm publish action:\nhttps://github.com/steveyegge/beads/actions/workflows/npm-publish.yml\n\nVerify at: https://www.npmjs.com/package/@anthropics/claude-code-beads-plugin/v/0.30.4\n\nCheck:\n```bash\nnpm view @anthropics/claude-code-beads-plugin@0.30.4 version\n```\n\n\n```verify\nnpm view @anthropics/claude-code-beads-plugin@0.30.4 version 2\u003e/dev/null | grep -q '0.30.4'\n```","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.091806-08:00","updated_at":"2025-12-17T21:46:46.333213-08:00","closed_at":"2025-12-17T21:46:46.333213-08:00","dependencies":[{"issue_id":"bd-pbh.15","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.092205-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.15","depends_on_id":"bd-pbh.12","type":"blocks","created_at":"2025-12-17T21:19:11.301843-08:00","created_by":"daemon"}]} -{"id":"bd-aydr.2","title":"Implement backup functionality for reset","description":"Add backup capability that can be used by reset command.\n\n## Functionality\n- Copy .beads/ to .beads-backup-{timestamp}/\n- Timestamp format: YYYYMMDD-HHMMSS\n- Preserve file permissions\n- Return backup path for user feedback\n\n## Location\n`internal/reset/backup.go` - keep with reset package for now (YAGNI)\n\n## Interface\n```go\nfunc CreateBackup(beadsDir string) (backupPath string, err error)\n```\n\n## Notes\n- Simple recursive file copy, no compression needed\n- Error if backup dir already exists (unlikely with timestamp)\n- Backup directories SHOULD be gitignored\n- Add `.beads-backup-*/` pattern to .beads/.gitignore template in doctor package\n- Consider: ListBackups() for future `bd backup list` command (not for this PR)","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:51.306103+11:00","updated_at":"2025-12-13T10:13:32.610819+11:00","closed_at":"2025-12-13T09:20:20.590488+11:00","dependencies":[{"issue_id":"bd-aydr.2","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:51.306474+11:00","created_by":"daemon"}]} -{"id":"bd-8e0q","title":"Merge: beads-ocs","description":"branch: polecat/valkyrie\ntarget: main\nsource_issue: beads-ocs\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:24:45.281478-08:00","updated_at":"2025-12-19T23:24:45.281478-08:00"} -{"id":"bd-otf4","title":"Code Review: PR #481 - Context Engineering Optimizations","description":"Comprehensive code review of the merged context engineering PR (PR #481) that reduces MCP context usage by 80-90%.\n\n## Summary\nThe PR successfully implements lazy tool schema loading and minimal issue models to reduce context window usage. Overall implementation is solid and well-tested.\n\n## Positive Findings\nāœ… Well-designed models (IssueMinimal, CompactedResult)\nāœ… Comprehensive test coverage (28 tests, all passing)\nāœ… Clear documentation and comments\nāœ… Backward compatibility preserved (show() still returns full Issue)\nāœ… Sensible defaults (COMPACTION_THRESHOLD=20, PREVIEW_COUNT=5)\nāœ… Tool catalog complete with all 15 tools documented\n\n## Issues Identified\nSee linked issues for specific followup tasks.\n\n## Context Engineering Architecture\n- discover_tools(): List tool names only (~500 bytes vs ~15KB)\n- get_tool_info(name): Get specific tool details on-demand\n- IssueMinimal: Lightweight model for list views (~80 bytes vs ~400 bytes)\n- CompactedResult: Auto-compacts results with \u003e20 issues\n- _to_minimal(): Conversion function (efficient, no N+1 issues)","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:24:13.523532-08:00","updated_at":"2025-12-14T14:24:13.523532-08:00"} -{"id":"bd-7yg","title":"Git merge driver uses invalid placeholders (%L, %R instead of %A, %B)","description":"## Problem\n\nThe beads git merge driver is configured with invalid Git placeholders:\n\n```\ngit config merge.beads.driver \"bd merge %A %O %L %R\"\n```\n\nGit doesn't recognize `%L` or `%R` as valid merge driver placeholders. The valid placeholders are:\n- `%O` = base (common ancestor)\n- `%A` = current version (ours)\n- `%B` = other version (theirs)\n\n## Impact\n\n- Affects ALL users when they have `.beads/beads.jsonl` merge conflicts\n- Automatic JSONL merge fails with error: \"error reading left file: failed to open file: open 7: no such file or directory\"\n- Users must manually resolve conflicts instead of getting automatic merge\n\n## Root Cause\n\nThe `bd init` command (or wherever the merge driver is configured) is using non-standard placeholders. When Git encounters `%L` and `%R`, it either passes them literally or interprets them incorrectly.\n\n## Fix\n\nUpdate the merge driver configuration to:\n```\ngit config merge.beads.driver \"bd merge %A %O %A %B\"\n```\n\nWhere:\n- 1st `%A` = output file (current file, will be overwritten)\n- `%O` = base (common ancestor)\n- 2nd `%A` = left/current version\n- `%B` = right/other version\n\n## Action Items\n\n1. Fix `bd init` (or equivalent setup command) to use correct placeholders\n2. Add migration/warning for existing users with misconfigured merge driver\n3. Update documentation with correct merge driver setup\n4. Consider adding validation when `bd init` is run","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-21T19:51:55.747608-05:00","updated_at":"2025-12-17T23:13:40.532368-08:00","closed_at":"2025-12-17T17:24:52.678668-08:00"} -{"id":"bd-8fgn","title":"test hash length","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T13:49:32.113843-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-06px","title":"bd sync --from-main fails: unknown flag --no-git-history","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-17T14:32:02.998106-08:00","updated_at":"2025-12-17T23:13:40.531756-08:00","closed_at":"2025-12-17T17:21:48.506039-08:00"} -{"id":"bd-y8bj","title":"Auto-detect identity from directory context for bd mail","description":"Currently bd mail inbox defaults to git user name, requiring --identity flag with exact format.\n\n## Problem\n- Mail sent to `gastown/crew/max`\n- Max runs `bd mail inbox` ā†’ defaults to 'Steve Yegge' (git user)\n- Max must know to use `--identity 'gastown/crew/max'` with exact slashes\n\n## Proposed Fix\nAuto-detect identity from directory context when in a Gas Town workspace:\n- In `/Users/stevey/gt/gastown/crew/max`, infer identity = `gastown/crew/max`\n- Pattern: `\u003ctown\u003e/\u003crig\u003e/\u003crole\u003e/\u003cname\u003e` ā†’ `\u003crig\u003e/\u003crole\u003e/\u003cname\u003e`\n\n## Additional Improvements\n1. Support GT_IDENTITY env var (set by gt crew at / session spawning)\n2. Support identity in .beads/config.yaml\n3. Normalize format: accept both slashes and dashes as equivalent\n\n## Context\nDiscovered during crew-to-crew work assignment. Max couldn't see mail despite correct nudge because identity defaulted wrong.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-20T17:22:53.938586-08:00","updated_at":"2025-12-20T17:58:51.034201-08:00","closed_at":"2025-12-20T17:58:51.034201-08:00"} -{"id":"bd-77gm","title":"Import reports misleading '0 created, 0 updated' when actually importing all issues","description":"When running 'bd import' on a fresh database (no existing issues), the command reports 'Import complete: 0 created, 0 updated' even though it successfully imported all issues from the JSONL file.\n\n**Steps to reproduce:**\n1. Delete .beads/beads.db\n2. Run: bd import .beads/issues.jsonl\n3. Observe output: 'Import complete: 0 created, 0 updated'\n4. Run: bd list\n5. Confirm: All issues are actually present in the database\n\n**Expected behavior:**\nReport the actual number of issues imported, e.g., 'Import complete: 523 created, 0 updated'\n\n**Actual behavior:**\n'Import complete: 0 created, 0 updated' (misleading - makes user think import failed)\n\n**Impact:**\n- Users think import failed when it succeeded\n- Confusing during database sync operations (e.g., after git pull)\n- Makes debugging harder (can't tell if import actually worked)\n\n**Context:**\nDiscovered during VC session when syncing database after git pull. The misleading message caused confusion about whether the database was properly synced with the canonical JSONL file.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-11-09T16:20:13.191156-08:00","updated_at":"2025-11-09T16:20:13.191156-08:00"} -{"id":"bd-4q8","title":"bd cleanup --hard should skip tombstone creation for true permanent deletion","description":"## Problem\n\nWhen using bd cleanup --hard --older-than N --force, the command:\n1. Deletes closed issues older than N days (converting them to tombstones with NOW timestamp)\n2. Then tries to prune tombstones older than N days (finds none because they were just created)\n\nThis leaves the database bloated with fresh tombstones that will not be pruned.\n\n## Expected Behavior\n\nIn --hard mode, the deletion should be permanent without creating tombstones, since the user explicitly requested bypassing sync safety.\n\n## Workaround\n\nManually delete from database: sqlite3 .beads/beads.db 'DELETE FROM issues WHERE status=tombstone'\n\n## Fix Options\n\n1. In --hard mode, use a different delete path that does not create tombstones\n2. After deleting, immediately prune the just-created tombstones regardless of age\n3. Pass a skip_tombstone flag to the delete operation\n\nOption 1 is cleanest - --hard should mean permanent delete without tombstone.","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T01:33:36.580657-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-hkr6","title":"GH#518: Document bd setup command","description":"bd setup is undiscoverable. Add to README/docs. Currently only findable by grepping source. See GitHub issue #518.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:54.664668-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-t4u1","title":"False positive detection by Kaspersky Antivirus (Trojan)","description":"Kaspersky Antivirus falsely detects beads (bd.exe v0.23.1) as a Trojan (PDM:Trojan.Win32.Generic) and removes it.\nEvent: Malicious object detected\nComponent: System Watcher\nObject name: bd.exe\n","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-20T18:56:12.498187-05:00","updated_at":"2025-11-20T18:56:12.498187-05:00"} -{"id":"bd-cb64c226.12","title":"Remove Storage Cache from Server Struct","description":"Eliminate cache fields and use s.storage directly","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:25.474412-07:00","updated_at":"2025-12-17T23:18:29.111039-08:00","deleted_at":"2025-12-17T23:18:29.111039-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-qqc.3","title":"Update CHANGELOG.md for {{version}}","description":"In CHANGELOG.md:\n\n1. Change `## [Unreleased]` section header to `## [{{version}}] - {{date}}`\n2. Add new empty `## [Unreleased]` section above it\n3. Review and clean up the changes list\n\nFormat:\n```markdown\n## [Unreleased]\n\n## [{{version}}] - {{date}}\n\n### Added\n- ...\n\n### Changed\n- ...\n\n### Fixed\n- ...\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:39.738561-08:00","updated_at":"2025-12-18T23:34:18.629213-08:00","closed_at":"2025-12-18T22:41:41.846609-08:00","dependencies":[{"issue_id":"bd-qqc.3","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:39.739138-08:00","created_by":"stevey"}]} -{"id":"bd-thgk","title":"Improve test coverage for internal/compact (18.2% ā†’ 70%)","description":"The compact package has only 18.2% test coverage. This is a core package handling issue compaction and should have at least 70% coverage.\n\nKey functions needing tests:\n- runCompactSingle (0%)\n- runCompactAll (0%)\n- runCompactRPC (0%)\n- runCompactStatsRPC (0%)\n- runCompactAnalyze (0%)\n- runCompactApply (0%)\n- pruneDeletionsManifest (0%)\n\nCurrent coverage: 18.2%\nTarget coverage: 70%","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-13T20:42:58.455767-08:00","updated_at":"2025-12-13T21:01:15.070551-08:00"} -{"id":"bd-whgv","title":"Merge: bd-401h","description":"branch: polecat/rictus\ntarget: main\nsource_issue: bd-401h\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:20:37.854953-08:00","updated_at":"2025-12-19T23:20:37.854953-08:00"} -{"id":"bd-lw0x","title":"Fix bd sync race condition with daemon causing dirty working directory","description":"After bd sync completes with sync.branch mode, subsequent bd commands or daemon file watcher would see a hash mismatch and trigger auto-import, which then schedules re-export, dirtying the working directory.\n\n**Root cause:**\n1. bd sync exports JSONL with NEW content (hash H1)\n2. bd sync updates jsonl_content_hash = H1 in DB\n3. bd sync restores JSONL from HEAD (OLD content, hash H0)\n4. Now: file hash = H0, DB hash = H1 (MISMATCH)\n5. Daemon or next CLI command sees mismatch, imports from OLD JSONL\n6. Import triggers re-export ā†’ file is dirty\n\n**Fix:**\nAfter restoreBeadsDirFromBranch(), update jsonl_content_hash to match the restored file's hash. This ensures daemon and CLI see file hash = DB hash ā†’ no spurious import/export cycle.\n\nRelated: bd-c83r (multiple daemon prevention)","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-13T06:42:17.130839-08:00","updated_at":"2025-12-13T06:43:33.329042-08:00","closed_at":"2025-12-13T06:43:33.329042-08:00"} -{"id":"bd-io8c","title":"Improve test coverage for internal/syncbranch (33.0% ā†’ 70%)","description":"The syncbranch package has only 33.0% test coverage. This package handles git sync operations and is critical for data integrity.\n\nCurrent coverage: 33.0%\nTarget coverage: 70%","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-13T20:43:02.079145-08:00","updated_at":"2025-12-13T21:01:14.972533-08:00"} -{"id":"bd-3ggb","title":"Rebuild local binary","description":"Build and verify: go build -o bd ./cmd/bd \u0026\u0026 ./bd version","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:03.101428-08:00","updated_at":"2025-12-18T22:46:40.955673-08:00","closed_at":"2025-12-18T22:46:40.955673-08:00","dependencies":[{"issue_id":"bd-3ggb","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.748289-08:00","created_by":"daemon"},{"issue_id":"bd-3ggb","depends_on_id":"bd-4y4g","type":"blocks","created_at":"2025-12-18T22:43:20.950376-08:00","created_by":"daemon"}]} -{"id":"bd-cb64c226.6","title":"Verify MCP Server Compatibility","description":"Ensure MCP server works with cache-free daemon","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:56:03.241615-07:00","updated_at":"2025-12-17T23:18:29.109644-08:00","deleted_at":"2025-12-17T23:18:29.109644-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-ziy5","title":"GH#409: bd init uses issues.jsonl but docs say beads.jsonl","description":"bd init creates config referencing issues.jsonl but README/docs reference beads.jsonl as canonical. Standardize naming. See GitHub issue #409.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:58.109954-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-4uoc","title":"Code Review Followup Summary: PR #481 + PR #551","description":"## Merged PRs Summary\n\n### PR #551: Persist close_reason to issues table\n- āœ… Merged successfully\n- āœ… Bug fix: close_reason now persisted in database column (not just events table)\n- āœ… Comprehensive test coverage added\n- āœ… Handles reopen case (clearing close_reason)\n\n**Followup Issues Filed:**\n- bd-lxzx: Document close_reason in JSONL export format\n- bd-077e: Update CLI documentation for close_reason field\n\n---\n\n### PR #481: Context Engineering Optimizations (80-90% context reduction)\n- āœ… Merged successfully \n- āœ… Lazy tool discovery: discover_tools() + get_tool_info()\n- āœ… Minimal issue models: IssueMinimal (~80% smaller than full Issue)\n- āœ… Result compaction: Auto-compacts results \u003e20 items\n- āœ… All 28 tests passing\n- āš ļø Breaking change: ready() and list() return type changed\n\n**Followup Issues Filed:**\n- bd-b318: Add integration tests for CompactedResult\n- bd-4u2b: Make compaction settings configurable (THRESHOLD, PREVIEW_COUNT)\n- bd-2kf8: Document CompactedResult response format in CONTEXT_ENGINEERING.md\n- bd-pdr2: Document backwards compatibility considerations\n\n---\n\n## Overall Assessment\n\nBoth PRs are production-ready with solid implementations. All critical functionality works and tests pass. Followup issues focus on:\n1. Documentation improvements (5 issues)\n2. Integration test coverage (1 issue)\n3. Configuration flexibility (1 issue)\n4. Backwards compatibility guidance (1 issue)\n\nNo critical bugs or design issues found.\n\n## Review Completed By\nCode review process completed. Issues auto-created for tracking improvements.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:59.214886-08:00","updated_at":"2025-12-14T14:25:59.214886-08:00","dependencies":[{"issue_id":"bd-4uoc","depends_on_id":"bd-otf4","type":"discovered-from","created_at":"2025-12-14T14:25:59.216884-08:00","created_by":"stevey"},{"issue_id":"bd-4uoc","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:59.217296-08:00","created_by":"stevey"}]} -{"id":"bd-vpan","title":"Re: Thread Test 2","description":"Got your message. Testing reply feature.","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:29.144352-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-vpan","depends_on_id":"bd-x36g","type":"replies-to","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} -{"id":"bd-pbh","title":"Release v0.30.4","description":"## Version Bump Workflow\n\nCoordinating release from 0.30.3 to 0.30.4.\n\n### Components Updated\n- Go CLI (cmd/bd/version.go)\n- Claude Plugin (.claude-plugin/*.json)\n- MCP Server (integrations/beads-mcp/)\n- npm Package (npm-package/package.json)\n- Git hooks (cmd/bd/templates/hooks/)\n\n### Release Channels\n- GitHub Releases (GoReleaser)\n- PyPI (beads-mcp)\n- npm (@beads/cli)\n- Homebrew (homebrew-beads tap)\n","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-17T21:19:10.926133-08:00","updated_at":"2025-12-17T21:46:46.192948-08:00","closed_at":"2025-12-17T21:46:46.192948-08:00"} -{"id":"bd-x1xs","title":"Work on beads-1ra: Add molecules.jsonl as separate catalo...","description":"Work on beads-1ra: Add molecules.jsonl as separate catalog file for template molecules","status":"in_progress","priority":2,"issue_type":"task","created_at":"2025-12-19T20:17:44.840032-08:00","updated_at":"2025-12-19T20:17:44.905944-08:00"} -{"id":"bd-dsp","title":"Test stdin body-file","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T17:27:32.098806-08:00","updated_at":"2025-12-17T17:28:33.832749-08:00","closed_at":"2025-12-17T17:28:33.832749-08:00"} -{"id":"bd-pbh.14","title":"Monitor PyPI publish","description":"Watch the PyPI publish action:\nhttps://github.com/steveyegge/beads/actions/workflows/pypi-publish.yml\n\nVerify at: https://pypi.org/project/beads-mcp/0.30.4/\n\nCheck:\n```bash\npip index versions beads-mcp 2\u003e/dev/null | grep -q '0.30.4'\n```\n\n\n```verify\npip index versions beads-mcp 2\u003e/dev/null | grep -q '0.30.4' || curl -s https://pypi.org/pypi/beads-mcp/json | jq -e '.releases[\"0.30.4\"]'\n```","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.083809-08:00","updated_at":"2025-12-17T21:46:46.320922-08:00","closed_at":"2025-12-17T21:46:46.320922-08:00","dependencies":[{"issue_id":"bd-pbh.14","depends_on_id":"bd-pbh.12","type":"blocks","created_at":"2025-12-17T21:19:11.289698-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.14","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.084126-08:00","created_by":"daemon"}]} -{"id":"bd-7di","title":"worktree: any bd command is slow","description":"in a git worktree any bd command is slow, with a 2-3s pause before any results are shown. The identical command with `--no-daemon` is near instant.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-05T15:33:42.924618693-07:00","updated_at":"2025-12-05T15:33:42.924618693-07:00"} -{"id":"bd-pbh.3","title":"Add 0.30.4 to info.go release notes","description":"Update cmd/bd/info.go versionChanges map with release notes for 0.30.4.\nInclude any workflow-impacting changes for --whats-new output.\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.966781-08:00","updated_at":"2025-12-17T21:46:46.222445-08:00","closed_at":"2025-12-17T21:46:46.222445-08:00","dependencies":[{"issue_id":"bd-pbh.3","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.967287-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.3","depends_on_id":"bd-pbh.2","type":"blocks","created_at":"2025-12-17T21:19:11.149584-08:00","created_by":"daemon"}]} -{"id":"bd-4nqq","title":"Remove dead test code in info_test.go","description":"Code health review found cmd/bd/info_test.go has two tests permanently skipped:\n\n- TestInfoCommand\n- TestInfoCommandNoDaemon\n\nBoth skip with: 'Manual test - bd info command is working, see manual testing'\n\nThese are essentially dead code. Either automate them or remove them entirely.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:27.554019-08:00","updated_at":"2025-12-16T18:17:27.554019-08:00","dependencies":[{"issue_id":"bd-4nqq","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.381694-08:00","created_by":"daemon"}]} -{"id":"bd-dwh","title":"Implement or remove ExpectExit/ExpectStdout verification fields","description":"The Verification struct in internal/types/workflow.go has ExpectExit and ExpectStdout fields that are never used by workflowVerifyCmd. Either implement the functionality or remove the dead fields.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-17T22:23:02.708627-08:00","updated_at":"2025-12-17T22:34:07.300348-08:00","closed_at":"2025-12-17T22:34:07.300348-08:00"} -{"id":"bd-qqc.8","title":"Create and push git tag v{{version}}","description":"Create the release tag and push it:\n\n```bash\ngit tag v{{version}}\ngit push origin v{{version}}\n```\n\nThis triggers the GoReleaser GitHub Action to build release binaries.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:34.659927-08:00","updated_at":"2025-12-18T22:47:14.054232-08:00","closed_at":"2025-12-18T22:47:14.054232-08:00","dependencies":[{"issue_id":"bd-qqc.8","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:34.660248-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.8","depends_on_id":"bd-vgi5","type":"blocks","created_at":"2025-12-18T22:43:21.209529-08:00","created_by":"daemon"}]} -{"id":"bd-y2v","title":"Refactor duplicate JSONL-from-git parsing code","description":"Both readFirstIssueFromGit() in init.go and importFromGit() in autoimport.go have similar code patterns for:\n1. Running git show \u003cref\u003e:\u003cpath\u003e\n2. Scanning the output with bufio.Scanner\n3. Parsing JSON lines\n\nCould be refactored to share a helper like:\n- readJSONLFromGit(gitRef, path string) ([]byte, error)\n- Or a streaming version: streamJSONLFromGit(gitRef, path string) (io.Reader, error)\n\nFiles:\n- cmd/bd/autoimport.go:225-256 (importFromGit)\n- cmd/bd/init.go:1212-1243 (readFirstIssueFromGit)\n\nPriority is low since code duplication is minimal and both functions work correctly.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-05T14:51:18.41124-08:00","updated_at":"2025-12-05T14:51:18.41124-08:00"} -{"id":"bd-bw6","title":"Fix G104 errors unhandled in internal/storage/sqlite/queries.go:1181","description":"Linting issue: G104: Errors unhandled (gosec) at internal/storage/sqlite/queries.go:1181:4. Error: rows.Close()","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:09.008444133-07:00","updated_at":"2025-12-17T23:13:40.536627-08:00","closed_at":"2025-12-17T16:46:11.029355-08:00"} -{"id":"bd-2q6d","title":"Beads commands operate on stale database without warning","description":"All beads read operations should validate database is in sync with JSONL before proceeding.\n\n**Current Behavior:**\n- Commands can query/read from stale database\n- Only mutation operations (like 'bd sync') check if JSONL is newer\n- User gets incorrect results without realizing database is out of sync\n\n**Expected Behavior:**\n- All beads commands should have pre-flight check for database freshness\n- If JSONL is newer than database, refuse to operate with error: \"Database out of sync. Run 'bd import' first.\"\n- Same safety check that exists for 'bd sync' should apply to ALL operations\n\n**Impact:**\n- Users make decisions based on incomplete/outdated data\n- Silent failures lead to confusion (e.g., thinking issues don't exist when they do)\n- Similar to running git commands on stale repo without being warned to pull\n\n**Example:**\n- Searched for bd-g9eu issue file: not found\n- Issue exists in .beads/issues.jsonl (in git)\n- Database was stale, but no warning was given\n- Led to incorrect conclusion that issue was already closed/deleted","notes":"## Implementation Complete\n\n**Phase 1: Created staleness check (cmd/bd/staleness.go)**\n- ensureDatabaseFresh() function checks JSONL mtime vs last_import_time\n- Returns error with helpful message when database is stale\n- Auto-skips in daemon mode (daemon has auto-import)\n\n**Phase 2: Added to all read commands**\n- list, show, ready, status, stale, info, duplicates, validate\n- Check runs before database queries in direct mode\n- Daemon mode already protected via checkAndAutoImportIfStale()\n\n**Phase 3: Code Review Findings**\nSee follow-up issues:\n- bd-XXXX: Add warning when staleness check errors\n- bd-YYYY: Improve CheckStaleness error handling\n- bd-ZZZZ: Refactor redundant daemon checks (low priority)\n\n**Testing:**\n- Build successful: go build ./cmd/bd\n- Binary works: ./bd --version\n- Ready for manual testing\n\n**Next Steps:**\n1. Test with stale database scenario\n2. Implement review improvements\n3. Close issue when tests pass","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-20T19:33:40.019297-05:00","updated_at":"2025-12-17T23:13:40.535149-08:00","closed_at":"2025-12-17T19:11:12.982639-08:00"} -{"id":"bd-0vg","title":"Pinned issues: persistent context markers","description":"Add ability to pin issues so they remain visible and are excluded from work-finding commands. Pinned issues serve as persistent context markers (handoffs, architectural notes, recovery instructions) that should not be claimed as work items.\n\nUse Cases:\n1. Handoff messages - Pin session handoffs so new agents always see them\n2. Architecture decisions - Pin ADRs or design notes for reference \n3. Recovery context - Pin amnesia-cure notes that help agents orient\n\nCore commands: bd pin, bd unpin, bd list --pinned/--no-pinned","status":"open","priority":1,"issue_type":"epic","created_at":"2025-12-18T23:33:10.911092-08:00","updated_at":"2025-12-18T23:33:17.882415-08:00"} -{"id":"bd-elqd","title":"Systematic bd sync stability investigation","description":"## Context\n\nbd sync has chronic instability issues that have persisted since inception:\n- issues.jsonl is always dirty after push\n- bd sync often creates messes requiring manual cleanup\n- Problems escalating despite accumulated bug fixes\n- Workarounds are getting increasingly draconian\n\n## Goal\n\nSystematically observe and diagnose bd sync failures rather than applying band-aid fixes.\n\n## Approach\n\n1. Start fresh session with latest binary (all fixes applied)\n2. Run bd sync and carefully observe what happens\n3. Document exact sequence of events when things go wrong\n4. File specific issues for each discrete problem identified\n5. Track the root causes, not just symptoms\n\n## Test Environment\n\n- Fresh clone or clean state\n- Latest bd binary with all bug fixes\n- Monitor both local and remote JSONL state\n- Check for timing issues, race conditions, merge conflicts\n\n## Success Criteria\n\n- Identify root causes of sync instability\n- Create actionable issues for each problem\n- Eventually achieve stable bd sync (no manual intervention needed)","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T22:57:25.35289-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-74w1","title":"Consolidate duplicate path-finding utilities (findJSONLPath, findBeadsDir, findGitRoot)","description":"Code health review found these functions defined in multiple places:\n\n- findJSONLPath() in autoflush.go:45-73 and doctor/fix/migrate.go\n- findBeadsDir() in autoimport.go:197-239 (with git worktree handling)\n- findGitRoot() in autoimport.go:242-269 (Windows path conversion)\n\nThe beads package has public FindBeadsDir() and FindJSONLPath() APIs that should be used consistently.\n\nImpact: Bug fixes need to be applied in multiple places. Git worktree handling may not be replicated everywhere.\n\nFix: Consolidate all implementations to use the beads package APIs. Remove duplicates.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-16T18:17:16.694293-08:00","updated_at":"2025-12-16T18:17:16.694293-08:00","dependencies":[{"issue_id":"bd-74w1","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.526122-08:00","created_by":"daemon"}]} -{"id":"bd-0zp7","title":"Add missing hook calls in mail reply and ack","description":"The mail commands are missing hook calls:\n\n1. runMailReply (mail.go:525-672) creates a message but doesn't call hookRunner.Run(hooks.EventMessage, ...) after creating the reply in direct mode (around line 640)\n\n2. runMailAck (mail.go:432-523) closes messages but doesn't call hookRunner.Run(hooks.EventClose, ...) after closing each message (around line 487 for daemon mode, 493 for direct mode)\n\nThis means GGT hooks won't fire for replies or message acknowledgments.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T20:52:53.069412-08:00","updated_at":"2025-12-17T23:13:40.532054-08:00","closed_at":"2025-12-17T17:22:59.368024-08:00"} -{"id":"bd-7h5","title":"Add pinned field to issue schema","description":"Add boolean 'pinned' field to the issue schema. When true, the issue is marked as a persistent context marker that should not be treated as a work item.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:26.767247-08:00","updated_at":"2025-12-19T00:08:59.854605-08:00","closed_at":"2025-12-19T00:08:59.854605-08:00","dependencies":[{"issue_id":"bd-7h5","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:55.98635-08:00","created_by":"daemon"}]} -{"id":"bd-077e","title":"Add close_reason field to CLI schema and documentation","description":"PR #551 persists close_reason, but the CLI documentation may not mention this field as part of the issue schema.\n\n## Current State\n- close_reason is now persisted in database\n- `bd show --json` will return close_reason in JSON output\n- Documentation may not reflect this new field\n\n## What's Missing\n- CLI reference documentation for close_reason field\n- Schema documentation showing close_reason is a top-level issue field\n- Example output showing close_reason in bd show --json\n- bd close command documentation should mention close_reason parameter is optional\n\n## Suggested Action\n1. Update README.md or CLI reference docs to list close_reason as an issue field\n2. Add example to bd close documentation\n3. Update any type definitions or schema specs\n4. Consider adding close_reason to verbose list output (bd list --verbose)","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-14T14:25:28.448654-08:00","updated_at":"2025-12-14T14:25:28.448654-08:00","dependencies":[{"issue_id":"bd-077e","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:28.449968-08:00","created_by":"stevey"}]} -{"id":"bd-f3ll","title":"Merge: bd-ot0w","description":"branch: polecat/dementus\ntarget: main\nsource_issue: bd-ot0w\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:20:33.495772-08:00","updated_at":"2025-12-19T23:20:33.495772-08:00"} -{"id":"bd-abjw","title":"Consider consolidating config.yaml parsing into shared utility","description":"Multiple places parse config.yaml with custom structs:\n\n1. **autoimport.go:148** - `localConfig{SyncBranch}`\n2. **main.go:310** - strings.Contains for no-db (fragile, see bd-r6k2)\n3. **doctor.go:863** - strings.Contains for no-db (fragile, see bd-r6k2)\n4. **internal/config/config.go** - Uses viper (but caches at startup, problematic for tests)\n\nConsider creating a shared utility in `internal/configfile/` or extending the viper config:\n\n```go\n// internal/configfile/yaml.go\ntype YAMLConfig struct {\n SyncBranch string `yaml:\"sync-branch\"`\n NoDb bool `yaml:\"no-db\"`\n IssuePrefix string `yaml:\"issue-prefix\"`\n Author string `yaml:\"author\"`\n}\n\nfunc LoadYAML(beadsDir string) (*YAMLConfig, error) {\n // Parse config.yaml with proper YAML library\n}\n```\n\nBenefits:\n- Single source of truth for config.yaml structure\n- Proper YAML parsing everywhere\n- Easier to add new config fields\n\nTrade-off: May add complexity for simple one-off reads.","status":"open","priority":4,"issue_type":"task","created_at":"2025-12-07T02:03:26.067311-08:00","updated_at":"2025-12-07T02:03:26.067311-08:00"} -{"id":"bd-qqc.5","title":"Commit release v{{version}}","description":"Stage and commit the version bump:\n\n```bash\ngit add cmd/bd/version.go cmd/bd/info.go CHANGELOG.md\ngit commit -m \"release: v{{version}}\"\n```\n\nDo NOT push yet - tag first.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T13:00:04.097628-08:00","updated_at":"2025-12-18T23:34:18.630946-08:00","closed_at":"2025-12-18T22:41:41.864839-08:00","dependencies":[{"issue_id":"bd-qqc.5","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T13:00:04.098265-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.5","depends_on_id":"bd-qqc.4","type":"blocks","created_at":"2025-12-18T13:01:02.275008-08:00","created_by":"stevey"}]} -{"id":"bd-2oo.4","title":"Create migration script for edge field to dependency conversion","description":"Migration must:\n1. Read existing JSONL with old fields\n2. Convert field values to dependency records\n3. Write updated JSONL without old fields\n4. Handle edge cases (missing refs, duplicates)\n\nRun via: bd migrate or automatic on bd prime","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:01.760277-08:00","updated_at":"2025-12-18T02:49:10.602446-08:00","closed_at":"2025-12-18T02:49:10.602446-08:00","dependencies":[{"issue_id":"bd-2oo.4","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:01.760694-08:00","created_by":"daemon"}]} -{"id":"bd-dhza","title":"Reduce global state in cmd/bd/main.go (25+ variables)","description":"Code health review found main.go has 25+ global variables (lines 57-112):\n\n- dbPath, actor, store, jsonOutput, daemonClient, noDaemon\n- rootCtx, rootCancel, autoFlushEnabled\n- isDirty (marked 'USED BY LEGACY CODE')\n- needsFullExport (marked 'USED BY LEGACY CODE')\n- flushTimer (marked 'DEPRECATED')\n- flushMutex, storeMutex, storeActive\n- flushFailureCount, lastFlushError, flushManager\n- skipFinalFlush, autoImportEnabled\n- versionUpgradeDetected, previousVersion, upgradeAcknowledged\n\nImpact:\n- Hard to test individual commands\n- Race conditions possible\n- State leakage between commands\n\nFix: Move toward dependency injection. Remove deprecated variables. Consider cmd/bd/internal package.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:29.643293-08:00","updated_at":"2025-12-16T18:17:29.643293-08:00","dependencies":[{"issue_id":"bd-dhza","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.492112-08:00","created_by":"daemon"}]} -{"id":"bd-llfl","title":"Improve test coverage for cmd/bd CLI (26.2% ā†’ 50%)","description":"The main CLI package (cmd/bd) has only 26.2% test coverage. CLI commands should have at least 50% coverage to ensure reliability.\n\nKey areas with low/no coverage:\n- daemon_autostart.go (multiple 0% functions)\n- compact.go (several 0% functions)\n- Various command handlers\n\nCurrent coverage: 26.2%\nTarget coverage: 50%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:03.123341-08:00","updated_at":"2025-12-13T21:01:18.901944-08:00"} -{"id":"bd-kyo","title":"Run tests and linting","description":"Run the full test suite and linter:\n\n```bash\nTMPDIR=/tmp go test -short ./...\ngolangci-lint run ./...\n```\n\nFix any failures. Linting warnings acceptable (see LINTING.md).","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:59.290588-08:00","updated_at":"2025-12-18T22:44:36.570262-08:00","closed_at":"2025-12-18T22:44:36.570262-08:00","dependencies":[{"issue_id":"bd-kyo","depends_on_id":"bd-8hy","type":"blocks","created_at":"2025-12-18T22:43:20.570742-08:00","created_by":"daemon"},{"issue_id":"bd-kyo","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.370234-08:00","created_by":"daemon"}]} -{"id":"bd-aydr.9","title":"Add .beads-backup-* pattern to gitignore template","description":"Update the gitignore template in doctor package to include backup directories.\n\n## Change\nAdd `.beads-backup-*/` to the GitignoreTemplate in `cmd/bd/doctor/gitignore.go`\n\n## Why\nBackup directories created by `bd reset --backup` should not be committed to git.\nThey are local-only recovery tools.\n\n## File\n`cmd/bd/doctor/gitignore.go` - look for GitignoreTemplate constant","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-13T08:49:42.453483+11:00","updated_at":"2025-12-13T09:16:44.201889+11:00","closed_at":"2025-12-13T09:16:44.201889+11:00","dependencies":[{"issue_id":"bd-aydr.9","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:49:42.453886+11:00","created_by":"daemon"}]} +{"id":"bd-muw","title":"Add empty tasks validation in workflow create","description":"workflow.go:321 will panic if wf.Tasks is empty. Add validation that len(wf.Tasks) \u003e 0 before accessing wf.Tasks[0].","status":"closed","priority":3,"issue_type":"bug","created_at":"2025-12-17T22:23:00.75707-08:00","updated_at":"2025-12-17T22:34:07.281133-08:00","closed_at":"2025-12-17T22:34:07.281133-08:00"} +{"id":"bd-n386","title":"Improve test coverage for internal/daemon (27.3% ā†’ 60%)","description":"The daemon package has only 27.3% test coverage. The daemon is critical for background operations and reliability.\n\nKey areas needing tests:\n- Daemon autostart logic\n- Socket handling\n- PID file management\n- Health checks\n\nCurrent coverage: 27.3%\nTarget coverage: 60%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:00.895238-08:00","updated_at":"2025-12-13T21:01:17.274438-08:00"} {"id":"bd-n3v","title":"Error committing to sync branch: failed to create worktree","description":"\u003e bd sync --no-daemon\nā†’ Exporting pending changes to JSONL...\nā†’ Committing changes to sync branch 'beads-sync'...\nError committing to sync branch: failed to create worktree: failed to create worktree parent directory: mkdir /var/home/matt/dev/beads/fix-ci/.git: not a directory","notes":"**Problem Diagnosed**: The `bd sync` command was failing with \"mkdir /var/home/matt/dev/beads/fix-ci/.git: not a directory\" because it was being executed from the wrong directory.\n\n**Root Cause**: The command was run from `/var/home/matt/dev/beads` (where the `fix-ci` worktree exists) instead of the main repository directory `/var/home/matt/dev/beads/main`. Since `fix-ci` is a git worktree with a `.git` file (not directory), the worktree creation logic failed when trying to create `\u003ccurrent_dir\u003e/.git/beads-worktrees/\u003cbranch\u003e`.\n\n**Solution Verified**: Execute `bd sync` from the main repository directory:\n```bash\ncd main \u0026\u0026 bd sync --dry-run\n```\n","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-05T15:25:24.514998248-07:00","updated_at":"2025-12-05T15:42:32.910166956-07:00"} -{"id":"bd-d73u","title":"Re: Thread Test 2","description":"Great! Thread is working well.","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:46.655093-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-d73u","depends_on_id":"bd-vpan","type":"replies-to","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} +{"id":"bd-n4td","title":"Add warning when staleness check errors","description":"## Problem\n\nWhen ensureDatabaseFresh() calls CheckStaleness() and it errors (corrupted metadata, permission issues, etc.), we silently proceed with potentially stale data.\n\n**Location:** cmd/bd/staleness.go:27-32\n\n**Scenarios:**\n- Corrupted metadata table\n- Database locked by another process \n- Permission issues reading JSONL file\n- Invalid last_import_time format in DB\n\n## Current Code\n\n```go\nisStale, err := autoimport.CheckStaleness(ctx, store, dbPath)\nif err \\!= nil {\n // If we can't determine staleness, allow operation to proceed\n // (better to show potentially stale data than block user)\n return nil\n}\n```\n\n## Fix\n\n```go\nisStale, err := autoimport.CheckStaleness(ctx, store, dbPath)\nif err \\!= nil {\n fmt.Fprintf(os.Stderr, \"Warning: Could not verify database freshness: %v\\n\", err)\n fmt.Fprintf(os.Stderr, \"Proceeding anyway. Data may be stale.\\n\\n\")\n return nil\n}\n```\n\n## Impact\nMedium - users should know when staleness check fails\n\n## Effort\nEasy - 5 minutes","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-11-20T20:16:34.889997-05:00","updated_at":"2025-12-17T23:13:40.531031-08:00","closed_at":"2025-12-17T19:11:12.950618-08:00","dependencies":[{"issue_id":"bd-n4td","depends_on_id":"bd-2q6d","type":"blocks","created_at":"2025-11-20T20:18:20.154723-05:00","created_by":"stevey","metadata":"{}"}]} +{"id":"bd-n777","title":"Timer beads for scheduled agent callbacks","description":"## Problem\n\nAgents frequently need to wait for external events (CI completion, PR reviews, artifact builds) but have no good mechanism:\n- `sleep N` blocks and is unreliable (often times out at 8+ minutes)\n- Polling wastes context and is easy to forget\n- No way to survive session restarts\n\n## Proposal: Timer Beads\n\nA new bead type or field that represents a scheduled callback:\n\n### Creating timers\n```bash\nbd timer create --in 30s --callback \"Check CI run 12345\" --issue bd-xyz\nbd timer create --at \"2025-12-20T08:00:00\" --callback \"Morning standup\"\nbd timer create --in 5m --on-expire \"tmux send-keys -t dave 'bd show bd-xyz'\"\n```\n\n### Timer storage\n- Store in beads (survives restarts)\n- Fields: `expires_at`, `callback_description`, `on_expire_command`, `linked_issue`\n- Status: pending, fired, cancelled\n\n### Deacon integration\nThe Deacon daemon monitors timer beads:\n1. Wakes on next timer expiry\n2. Executes `on_expire` command (e.g., tmux send-keys to interrupt agent)\n3. Marks timer as fired\n4. Optionally updates linked issue\n\n### Use cases\n- CI monitoring: \"ping me when build completes\"\n- PR reviews: \"check back in 1 hour\"\n- Scheduled tasks: \"remind me at EOD to sync\"\n- Blocking waits: agent registers callback instead of sleeping\n\n## Acceptance criteria\n- [ ] Timer bead type or field design\n- [ ] `bd timer create/list/cancel` commands\n- [ ] Deacon timer monitoring loop\n- [ ] tmux integration for agent interrupts\n- [ ] Survives daemon restarts","status":"open","priority":2,"issue_type":"feature","created_at":"2025-12-19T23:05:33.051861-08:00","updated_at":"2025-12-19T23:05:33.051861-08:00"} +{"id":"bd-ncwo","title":"Ghost resurrection: remote status:closed wins during git merge","description":"During bd sync, the 3-way git merge sometimes keeps remote's status:closed instead of local's status:tombstone. This causes ghost issues to resurrect even when tombstones exist.\n\nRoot cause: Git 3-way merge doesn't understand tombstone semantics. If base had closed, local changed to tombstone, and remote has closed, git might keep remote's version.\n\nThe early tombstone check in importer.go only prevents CREATION when tombstones exist in DB. But if applyDeletionsFromMerge hard-deletes the tombstones before import runs (because they're not in the merged result), the check doesn't help.\n\nPotential fixes:\n1. Make tombstones 'win' in the beads merge driver (internal/merge/merge.go)\n2. Don't hard-delete tombstones in applyDeletionsFromMerge if they're in the DB\n3. Export tombstones to a separate file that's not subject to merge\n\nGhost issues: bd-cb64c226.*, bd-cbed9619.*","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T22:01:03.56423-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-ndye","title":"mergeDependencies uses union instead of 3-way merge","description":"## Critical Bug\n\nThe `mergeDependencies` function in internal/merge/merge.go performs a UNION of left and right dependencies instead of a proper 3-way merge. This causes removed dependencies to be resurrected.\n\n### Root Cause\n\n```go\n// Current code (lines 795-816):\nfunc mergeDependencies(left, right []Dependency) []Dependency {\n // Just unions left + right\n // NEVER REMOVES anything\n // Doesn't even look at base!\n}\n```\n\nAnd `mergeIssue` (line 579) doesn't pass `base`:\n```go\nresult.Dependencies = mergeDependencies(left.Dependencies, right.Dependencies)\n```\n\n### Impact\n\nIf:\n- Base has dependency D\n- Left removes D (intentional)\n- Right still has D (stale)\n\nCurrent: D is in result (resurrection!)\nCorrect: Left removed it, D should NOT be in result\n\nThis breaks Gas Town's workflow and data integrity. Closed means closed.\n\n### Fix\n\nChange `mergeDependencies` to take `base` and do proper 3-way merge:\n- If dep was in base and removed by left ā†’ exclude (left wins)\n- If dep was in base and removed by right ā†’ exclude (right wins)\n- If dep wasn't in base and added by either ā†’ include\n- If dep was in base and both still have it ā†’ include\n\nKey principle: **REMOVALS ARE AUTHORITATIVE**\n\n### Files to Change\n\n1. internal/merge/merge.go:\n - `mergeDependencies(left, right)` ā†’ `mergeDependencies(base, left, right)`\n - `mergeIssue` line 579: pass `base.Dependencies`\n\n### Related\n\nThis also explains why `ProtectLocalExportIDs` in importer is defined but never used - the protection was never actually implemented.","status":"closed","issue_type":"bug","created_at":"2025-12-18T23:15:54.475872-08:00","updated_at":"2025-12-18T23:21:10.709571-08:00","closed_at":"2025-12-18T23:21:10.709571-08:00"} +{"id":"bd-nl2","title":"No logging/debugging for tombstone resurrection events","description":"Per the design document bd-zvg Open Question 1: Should resurrection log a warning? Recommendation was Yes. Currently, when an expired tombstone loses to a live issue (resurrection), there is no logging or debugging output. This makes it hard to understand why an issue reappeared. Recommendation: Add optional debug logging when resurrection occurs, e.g., Issue bd-abc resurrected (tombstone expired). Files: internal/merge/merge.go:359-366, 371-378, 400-405, 410-415","status":"open","priority":4,"issue_type":"feature","created_at":"2025-12-05T16:36:52.27525-08:00","updated_at":"2025-12-05T16:36:52.27525-08:00"} +{"id":"bd-nuh1","title":"GH#403: bd doctor --fix circular error message","description":"bd doctor --fix suggests running bd doctor --fix for deletions manifest issue. Fix to provide actual resolution. See GitHub issue #403.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:16.290018-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-o4qy","title":"Improve CheckStaleness error handling","description":"## Problem\n\nCheckStaleness returns 'false' (not stale) for multiple error conditions instead of returning errors. This masks problems.\n\n**Location:** internal/autoimport/autoimport.go:253-285\n\n## Edge Cases That Return False\n\n1. **Invalid last_import_time format** (line 259-262)\n2. **No JSONL file found** (line 267-277) \n3. **JSONL stat fails** (line 279-282)\n\n## Fix\n\nReturn errors for abnormal conditions:\n\n```go\nlastImportTime, err := time.Parse(time.RFC3339, lastImportStr)\nif err != nil {\n return false, fmt.Errorf(\"corrupted last_import_time: %w\", err)\n}\n\nif jsonlPath == \"\" {\n return false, fmt.Errorf(\"no JSONL file found\")\n}\n\nstat, err := os.Stat(jsonlPath)\nif err != nil {\n return false, fmt.Errorf(\"cannot stat JSONL: %w\", err)\n}\n```\n\n## Impact\nMedium - edge cases are rare but should be handled\n\n## Effort \n30 minutes - requires updating callers in RPC server","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-11-20T20:17:27.606219-05:00","updated_at":"2025-12-17T23:13:40.536905-08:00","closed_at":"2025-12-17T19:11:12.965289-08:00","dependencies":[{"issue_id":"bd-o4qy","depends_on_id":"bd-2q6d","type":"blocks","created_at":"2025-11-20T20:18:26.81065-05:00","created_by":"stevey","metadata":"{}"}]} +{"id":"bd-o55a","title":"GH#509: bd doesn't find .beads when running from nested worktrees","description":"When worktrees are nested under main repo (.worktrees/feature/), bd stops at worktree git root instead of continuing to find .beads in parent. See GitHub issue #509 for detailed fix suggestion.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:20.281591-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-o9o","title":"Exclude pinned issues from bd ready","description":"Update bd ready to exclude pinned issues. Pinned issues are context markers, not work items, and should never appear in the ready-to-work list.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:41.979073-08:00","updated_at":"2025-12-18T23:33:41.979073-08:00","dependencies":[{"issue_id":"bd-o9o","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.392931-08:00","created_by":"daemon"},{"issue_id":"bd-o9o","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.612655-08:00","created_by":"daemon"}]} +{"id":"bd-ola6","title":"Implement transaction retry logic for SQLITE_BUSY","description":"BEGIN IMMEDIATE fails immediately on SQLITE_BUSY instead of retrying with exponential backoff.\n\nLocation: internal/storage/sqlite/sqlite.go:223-225\n\nProblem:\n- Under concurrent write load, BEGIN IMMEDIATE can fail with SQLITE_BUSY\n- Current implementation fails immediately instead of retrying\n- Results in spurious failures under normal concurrent usage\n\nSolution: Implement exponential backoff retry:\n- Retry up to N times (e.g., 5)\n- Backoff: 10ms, 20ms, 40ms, 80ms, 160ms\n- Check for context cancellation between retries\n- Only retry on SQLITE_BUSY/database locked errors\n\nImpact: Spurious failures under concurrent write load\n\nEffort: 3 hours","status":"open","priority":1,"issue_type":"feature","created_at":"2025-11-16T14:51:31.247147-08:00","updated_at":"2025-11-16T14:51:31.247147-08:00"} +{"id":"bd-ork0","title":"Add comments to 30+ silently ignored errors or fix them","description":"Code health review found 30+ instances of error suppression using blank identifier without explanation:\n\nGood examples (with comments):\n- merge.go: _ = gitRmCmd.Run() // Ignore errors\n- daemon_watcher.go: _ = watcher.Add(...) // Ignore error\n\nBad examples (no context):\n- create.go:213: dbPrefix, _ = store.GetConfig(ctx, \"issue_prefix\")\n- daemon_sync_branch.go: _ = daemonClient.Close()\n- migrate_hash_ids.go, version_tracking.go: _ = store.Close()\n\nFix: Add comments explaining WHY errors are ignored, or handle them properly.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:25.899372-08:00","updated_at":"2025-12-16T18:17:25.899372-08:00","dependencies":[{"issue_id":"bd-ork0","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.275843-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-ot0w","title":"Work on beads-tip: Fix broken Claude integration link in ...","description":"Work on beads-tip: Fix broken Claude integration link in bd doctor (GH#623). Update URL that doesn't exist. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:08.429157-08:00","updated_at":"2025-12-19T23:20:39.790305-08:00","closed_at":"2025-12-19T23:20:39.790305-08:00"} +{"id":"bd-otf4","title":"Code Review: PR #481 - Context Engineering Optimizations","description":"Comprehensive code review of the merged context engineering PR (PR #481) that reduces MCP context usage by 80-90%.\n\n## Summary\nThe PR successfully implements lazy tool schema loading and minimal issue models to reduce context window usage. Overall implementation is solid and well-tested.\n\n## Positive Findings\nāœ… Well-designed models (IssueMinimal, CompactedResult)\nāœ… Comprehensive test coverage (28 tests, all passing)\nāœ… Clear documentation and comments\nāœ… Backward compatibility preserved (show() still returns full Issue)\nāœ… Sensible defaults (COMPACTION_THRESHOLD=20, PREVIEW_COUNT=5)\nāœ… Tool catalog complete with all 15 tools documented\n\n## Issues Identified\nSee linked issues for specific followup tasks.\n\n## Context Engineering Architecture\n- discover_tools(): List tool names only (~500 bytes vs ~15KB)\n- get_tool_info(name): Get specific tool details on-demand\n- IssueMinimal: Lightweight model for list views (~80 bytes vs ~400 bytes)\n- CompactedResult: Auto-compacts results with \u003e20 issues\n- _to_minimal(): Conversion function (efficient, no N+1 issues)","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:24:13.523532-08:00","updated_at":"2025-12-14T14:24:13.523532-08:00"} +{"id":"bd-otli","title":"Wait for CI to pass","description":"Monitor GitHub Actions - all checks must pass before release artifacts are built","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:03.022281-08:00","updated_at":"2025-12-20T00:25:52.635223-08:00","closed_at":"2025-12-20T00:25:52.635223-08:00","close_reason":"CI passed - Release workflow completed successfully","dependencies":[{"issue_id":"bd-otli","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.097564-08:00","created_by":"daemon"},{"issue_id":"bd-otli","depends_on_id":"bd-7tuu","type":"blocks","created_at":"2025-12-19T22:56:23.360436-08:00","created_by":"daemon"}]} +{"id":"bd-pbh","title":"Release v0.30.4","description":"## Version Bump Workflow\n\nCoordinating release from 0.30.3 to 0.30.4.\n\n### Components Updated\n- Go CLI (cmd/bd/version.go)\n- Claude Plugin (.claude-plugin/*.json)\n- MCP Server (integrations/beads-mcp/)\n- npm Package (npm-package/package.json)\n- Git hooks (cmd/bd/templates/hooks/)\n\n### Release Channels\n- GitHub Releases (GoReleaser)\n- PyPI (beads-mcp)\n- npm (@beads/cli)\n- Homebrew (homebrew-beads tap)\n","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-17T21:19:10.926133-08:00","updated_at":"2025-12-17T21:46:46.192948-08:00","closed_at":"2025-12-17T21:46:46.192948-08:00","labels":["release","v0.30.4","workflow"]} +{"id":"bd-pbh.1","title":"Update cmd/bd/version.go to 0.30.4","description":"Update the Version constant in cmd/bd/version.go:\n```go\nVersion = \"0.30.4\"\n```\n\n\n```verify\ngrep -q 'Version = \"0.30.4\"' cmd/bd/version.go\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.9462-08:00","updated_at":"2025-12-17T21:46:46.20387-08:00","closed_at":"2025-12-17T21:46:46.20387-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.1","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.946633-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.10","title":"Run check-versions.sh - all must pass","description":"Run the version consistency check:\n```bash\n./scripts/check-versions.sh\n```\n\nAll versions must match 0.30.4.\n\n\n```verify\n./scripts/check-versions.sh\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.047311-08:00","updated_at":"2025-12-17T21:46:46.28316-08:00","closed_at":"2025-12-17T21:46:46.28316-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.047888-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.1","type":"blocks","created_at":"2025-12-17T21:19:11.159084-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.4","type":"blocks","created_at":"2025-12-17T21:19:11.168248-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.5","type":"blocks","created_at":"2025-12-17T21:19:11.177869-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.6","type":"blocks","created_at":"2025-12-17T21:19:11.187629-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.7","type":"blocks","created_at":"2025-12-17T21:19:11.199955-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.8","type":"blocks","created_at":"2025-12-17T21:19:11.211479-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.9","type":"blocks","created_at":"2025-12-17T21:19:11.224059-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.11","title":"Commit changes and create v0.30.4 tag","description":"```bash\ngit add -A\ngit commit -m \"chore: Bump version to 0.30.4\"\ngit tag -a v0.30.4 -m \"Release v0.30.4\"\n```\n\n\n```verify\ngit describe --tags --exact-match HEAD 2\u003e/dev/null | grep -q 'v0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.056575-08:00","updated_at":"2025-12-17T21:46:46.292166-08:00","closed_at":"2025-12-17T21:46:46.292166-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.056934-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh.10","type":"blocks","created_at":"2025-12-17T21:19:11.234175-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh.2","type":"blocks","created_at":"2025-12-17T21:19:11.245316-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh.3","type":"blocks","created_at":"2025-12-17T21:19:11.255362-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.12","title":"Push commit and tag to origin","description":"```bash\ngit push origin main\ngit push origin v0.30.4\n```\n\nThis triggers GitHub Actions:\n- GoReleaser build\n- PyPI publish\n- npm publish\n\n\n```verify\ngit ls-remote origin refs/tags/v0.30.4 | grep -q 'v0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.066074-08:00","updated_at":"2025-12-17T21:46:46.301948-08:00","closed_at":"2025-12-17T21:46:46.301948-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.12","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.066442-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.12","depends_on_id":"bd-pbh.11","type":"blocks","created_at":"2025-12-17T21:19:11.265986-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.13","title":"Monitor GoReleaser CI job","description":"Watch the GoReleaser action:\nhttps://github.com/steveyegge/beads/actions/workflows/release.yml\n\nShould complete in ~10 minutes and create:\n- GitHub Release with binaries for all platforms\n- Checksums and signatures\n\nCheck status:\n```bash\ngh run list --workflow=release.yml -L 1\ngh run watch # to monitor live\n```\n\nVerify release exists:\n```bash\ngh release view v0.30.4\n```\n\n\n```verify\ngh release view v0.30.4 --json tagName -q .tagName | grep -q 'v0.30.4'\n```","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.074476-08:00","updated_at":"2025-12-17T21:46:46.311506-08:00","closed_at":"2025-12-17T21:46:46.311506-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.13","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.074833-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.13","depends_on_id":"bd-pbh.12","type":"blocks","created_at":"2025-12-17T21:19:11.279092-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.14","title":"Monitor PyPI publish","description":"Watch the PyPI publish action:\nhttps://github.com/steveyegge/beads/actions/workflows/pypi-publish.yml\n\nVerify at: https://pypi.org/project/beads-mcp/0.30.4/\n\nCheck:\n```bash\npip index versions beads-mcp 2\u003e/dev/null | grep -q '0.30.4'\n```\n\n\n```verify\npip index versions beads-mcp 2\u003e/dev/null | grep -q '0.30.4' || curl -s https://pypi.org/pypi/beads-mcp/json | jq -e '.releases[\"0.30.4\"]'\n```","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.083809-08:00","updated_at":"2025-12-17T21:46:46.320922-08:00","closed_at":"2025-12-17T21:46:46.320922-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.14","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.084126-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.14","depends_on_id":"bd-pbh.12","type":"blocks","created_at":"2025-12-17T21:19:11.289698-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.15","title":"Monitor npm publish","description":"Watch the npm publish action:\nhttps://github.com/steveyegge/beads/actions/workflows/npm-publish.yml\n\nVerify at: https://www.npmjs.com/package/@anthropics/claude-code-beads-plugin/v/0.30.4\n\nCheck:\n```bash\nnpm view @anthropics/claude-code-beads-plugin@0.30.4 version\n```\n\n\n```verify\nnpm view @anthropics/claude-code-beads-plugin@0.30.4 version 2\u003e/dev/null | grep -q '0.30.4'\n```","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.091806-08:00","updated_at":"2025-12-17T21:46:46.333213-08:00","closed_at":"2025-12-17T21:46:46.333213-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.15","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.092205-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.15","depends_on_id":"bd-pbh.12","type":"blocks","created_at":"2025-12-17T21:19:11.301843-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.16","title":"Update Homebrew formula","description":"After GoReleaser completes, the Homebrew tap should be auto-updated.\n\nIf manual update needed:\n```bash\n./scripts/update-homebrew.sh v0.30.4\n```\n\nOr manually update steveyegge/homebrew-beads with new SHA256.\n\nVerify:\n```bash\nbrew update\nbrew info beads\n```\n","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.100213-08:00","updated_at":"2025-12-17T21:46:46.341942-08:00","closed_at":"2025-12-17T21:46:46.341942-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.16","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.100541-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.16","depends_on_id":"bd-pbh.13","type":"blocks","created_at":"2025-12-17T21:19:11.312625-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.17","title":"Install 0.30.4 Go binary locally","description":"Rebuild and install the Go binary:\n```bash\ngo install ./cmd/bd\n# OR\nmake install\n```\n\nVerify:\n```bash\nbd --version\n```\n\n\n```verify\nbd --version 2\u003e\u00261 | grep -q '0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.108597-08:00","updated_at":"2025-12-17T21:46:46.352702-08:00","closed_at":"2025-12-17T21:46:46.352702-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.17","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.108917-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.17","depends_on_id":"bd-pbh.13","type":"blocks","created_at":"2025-12-17T21:19:11.322091-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.18","title":"Restart beads daemon","description":"Kill any running daemons so they pick up the new version:\n```bash\nbd daemons killall\n```\n\nStart fresh daemon:\n```bash\nbd list # triggers daemon start\n```\n\nVerify daemon version:\n```bash\nbd version --daemon\n```\n\n\n```verify\nbd version --daemon 2\u003e\u00261 | grep -q '0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.11636-08:00","updated_at":"2025-12-17T21:46:46.364842-08:00","closed_at":"2025-12-17T21:46:46.364842-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.18","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.116706-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.18","depends_on_id":"bd-pbh.17","type":"blocks","created_at":"2025-12-17T21:19:11.330411-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.19","title":"Install 0.30.4 MCP server locally","description":"Upgrade the MCP server (after PyPI publish):\n```bash\npip install --upgrade beads-mcp\n# OR if using uv:\nuv tool upgrade beads-mcp\n```\n\nVerify:\n```bash\npip show beads-mcp | grep Version\n```\n\n\n```verify\npip show beads-mcp 2\u003e/dev/null | grep -q 'Version: 0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.124496-08:00","updated_at":"2025-12-17T21:46:46.372989-08:00","closed_at":"2025-12-17T21:46:46.372989-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.19","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.124829-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.19","depends_on_id":"bd-pbh.14","type":"blocks","created_at":"2025-12-17T21:19:11.343558-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.2","title":"Update CHANGELOG.md for 0.30.4","description":"1. Change `## [Unreleased]` to `## [0.30.4] - 2025-12-17`\n2. Add new empty `## [Unreleased]` section at top\n3. Ensure all changes since 0.30.3 are documented\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.956332-08:00","updated_at":"2025-12-17T21:46:46.214512-08:00","closed_at":"2025-12-17T21:46:46.214512-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.2","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.95683-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.20","title":"Update git hooks","description":"Install the updated hooks:\n```bash\nbd hooks install\n```\n\nVerify hook version:\n```bash\ngrep 'bd-hooks-version' .git/hooks/pre-commit\n```\n\n\n```verify\ngrep -q 'bd-hooks-version: 0.30.4' .git/hooks/pre-commit 2\u003e/dev/null || echo 'Hooks may not be installed - verify manually'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.13198-08:00","updated_at":"2025-12-17T21:46:46.381519-08:00","closed_at":"2025-12-17T21:46:46.381519-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.20","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.132306-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.20","depends_on_id":"bd-pbh.17","type":"blocks","created_at":"2025-12-17T21:19:11.352288-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.21","title":"Final release verification","description":"Verify all release artifacts are accessible:\n\n- [ ] `bd --version` shows 0.30.4\n- [ ] `bd version --daemon` shows 0.30.4\n- [ ] GitHub release exists: https://github.com/steveyegge/beads/releases/tag/v0.30.4\n- [ ] `brew upgrade beads \u0026\u0026 bd --version` shows 0.30.4 (if using Homebrew)\n- [ ] `pip show beads-mcp` shows 0.30.4\n- [ ] npm package available at 0.30.4\n- [ ] `bd info --whats-new` shows 0.30.4 notes\n\nRun final checks:\n```bash\nbd --version\nbd version --daemon\npip show beads-mcp | grep Version\nbd info --whats-new\n```\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.141249-08:00","updated_at":"2025-12-17T21:46:46.390985-08:00","closed_at":"2025-12-17T21:46:46.390985-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.141549-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.18","type":"blocks","created_at":"2025-12-17T21:19:11.364839-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.19","type":"blocks","created_at":"2025-12-17T21:19:11.373656-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.20","type":"blocks","created_at":"2025-12-17T21:19:11.382-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.15","type":"blocks","created_at":"2025-12-17T21:19:11.389733-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.16","type":"blocks","created_at":"2025-12-17T21:19:11.398347-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.3","title":"Add 0.30.4 to info.go release notes","description":"Update cmd/bd/info.go versionChanges map with release notes for 0.30.4.\nInclude any workflow-impacting changes for --whats-new output.\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.966781-08:00","updated_at":"2025-12-17T21:46:46.222445-08:00","closed_at":"2025-12-17T21:46:46.222445-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.3","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.967287-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.3","depends_on_id":"bd-pbh.2","type":"blocks","created_at":"2025-12-17T21:19:11.149584-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.4","title":"Update .claude-plugin/plugin.json to 0.30.4","description":"Update version field in .claude-plugin/plugin.json:\n```json\n\"version\": \"0.30.4\"\n```\n\n\n```verify\njq -e '.version == \"0.30.4\"' .claude-plugin/plugin.json\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.976866-08:00","updated_at":"2025-12-17T21:46:46.23159-08:00","closed_at":"2025-12-17T21:46:46.23159-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.4","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.97729-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.5","title":"Update .claude-plugin/marketplace.json to 0.30.4","description":"Update version field in .claude-plugin/marketplace.json:\n```json\n\"version\": \"0.30.4\"\n```\n\n\n```verify\njq -e '.plugins[0].version == \"0.30.4\"' .claude-plugin/marketplace.json\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.985619-08:00","updated_at":"2025-12-17T21:46:46.239122-08:00","closed_at":"2025-12-17T21:46:46.239122-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.5","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.985942-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.6","title":"Update integrations/beads-mcp/pyproject.toml to 0.30.4","description":"Update version in pyproject.toml:\n```toml\nversion = \"0.30.4\"\n```\n\n\n```verify\ngrep -q 'version = \"0.30.4\"' integrations/beads-mcp/pyproject.toml\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.994004-08:00","updated_at":"2025-12-17T21:46:46.246574-08:00","closed_at":"2025-12-17T21:46:46.246574-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.6","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.994376-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.7","title":"Update beads_mcp/__init__.py to 0.30.4","description":"Update __version__ in integrations/beads-mcp/src/beads_mcp/__init__.py:\n```python\n__version__ = \"0.30.4\"\n```\n\n\n```verify\ngrep -q '__version__ = \"0.30.4\"' integrations/beads-mcp/src/beads_mcp/__init__.py\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.005334-08:00","updated_at":"2025-12-17T21:46:46.254885-08:00","closed_at":"2025-12-17T21:46:46.254885-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.7","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.005699-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.8","title":"Update npm-package/package.json to 0.30.4","description":"Update version field in npm-package/package.json:\n```json\n\"version\": \"0.30.4\"\n```\n\n\n```verify\njq -e '.version == \"0.30.4\"' npm-package/package.json\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.014905-08:00","updated_at":"2025-12-17T21:46:46.268821-08:00","closed_at":"2025-12-17T21:46:46.268821-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.8","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.01529-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.9","title":"Update hook templates to 0.30.4","description":"Update bd-hooks-version comment in all 4 hook templates:\n- cmd/bd/templates/hooks/pre-commit\n- cmd/bd/templates/hooks/post-merge\n- cmd/bd/templates/hooks/pre-push\n- cmd/bd/templates/hooks/post-checkout\n\nEach should have:\n```bash\n# bd-hooks-version: 0.30.4\n```\n\n\n```verify\ngrep -l 'bd-hooks-version: 0.30.4' cmd/bd/templates/hooks/* | wc -l | grep -q '4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.0248-08:00","updated_at":"2025-12-17T21:46:46.27561-08:00","closed_at":"2025-12-17T21:46:46.27561-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.9","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.025124-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pdr2","title":"Consider backwards compatibility for ready() and list() return type change","description":"PR #481 changed the return types of `ready()` and `list()` from `list[Issue]` to `list[IssueMinimal] | CompactedResult`. This is a breaking change for MCP clients.\n\n## Impact Assessment\nBreaking change affects:\n- Any MCP client expecting `list[Issue]` from ready()\n- Any MCP client expecting `list[Issue]` from list()\n- Client code that accesses full Issue fields (description, design, acceptance_criteria, timestamps, dependencies, dependents)\n\n## Current Behavior\n- ready() returns `list[IssueMinimal] | CompactedResult`\n- list() returns `list[IssueMinimal] | CompactedResult`\n- show() still returns full `Issue` (good)\n\n## Considerations\n**Pros of current approach:**\n- Forces clients to use show() for full details (good for context efficiency)\n- Simple mental model (always use show for full data)\n- Documentation warns about this\n\n**Cons:**\n- Clients expecting list[Issue] will break\n- No graceful degradation option\n- No migration period\n\n## Potential Solutions\n1. Add optional parameter `full_details=false` to ready/list (would increase payload)\n2. Create separate tools: ready_minimal/list_minimal + ready_full/list_full\n3. Accept breaking change and document upgrade path (current approach)\n4. Version the MCP server and document migration guide\n\n## Recommendation\nCurrent approach (solution 3) is reasonable if:\n- Changelog clearly documents the breaking change\n- Migration guide provided to clients\n- Error handling is graceful for clients expecting specific fields","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:24:56.460465-08:00","updated_at":"2025-12-14T14:24:56.460465-08:00","dependencies":[{"issue_id":"bd-pdr2","depends_on_id":"bd-otf4","type":"discovered-from","created_at":"2025-12-14T14:24:56.461959-08:00","created_by":"stevey","metadata":"{}"}]} +{"id":"bd-pe4s","title":"JSON test issue","description":"Line 1\nLine 2\nLine 3","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T16:14:36.969074-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pgcs","title":"Clean up orphaned child issues (bd-cb64c226.*, bd-cbed9619.*)","description":"## Problem\n\nEvery bd command shows warnings about 12 orphaned child issues:\n- bd-cb64c226.1, .6, .8, .9, .10, .12, .13\n- bd-cbed9619.1, .2, .3, .4, .5\n\nThese are hierarchical IDs (parent.child format) where the parent issues no longer exist.\n\n## Impact\n\n- Clutters output of every bd command\n- Confusing for users\n- Indicates incomplete cleanup of deleted parent issues\n\n## Proposed Solution\n\n1. Delete the orphaned issues since their parents no longer exist:\n ```bash\n bd delete bd-cb64c226.1 bd-cb64c226.6 bd-cb64c226.8 ...\n ```\n\n2. Or convert them to top-level issues if they contain useful content\n\n## Investigation Needed\n\n- What were the parent issues bd-cb64c226 and bd-cbed9619?\n- Why were they deleted without their children?\n- Should bd delete cascade to children automatically?","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T23:06:17.240571-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pzw7","title":"gt handoff deadlock at handoff.go:125","notes":"When running 'gt handoff -m \"message\"' after successful MR submit, go panics with 'fatal error: all goroutines are asleep - deadlock\\!' at handoff.go:125. The shutdown request still appears to be sent successfully but the command crashes. Stack trace shows issue is in runHandoff select statement.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-19T23:22:12.46315-08:00","updated_at":"2025-12-19T23:22:18.613883-08:00"} +{"id":"bd-qioh","title":"Standardize error handling: replace direct fmt.Fprintf+os.Exit with FatalError","description":"Code health review found inconsistent error handling patterns:\n\nPattern A (preferred): FatalError() from errors.go:21-24\nPattern B (inconsistent): Direct fmt.Fprintf(os.Stderr) + os.Exit(1)\n\nAffected files:\n- delete.go:35-49 uses direct pattern\n- create.go:213 ignores error silently\n- Various other commands\n\nFix: Standardize on FatalError() wrapper for consistent error messages and testability.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-16T18:17:19.309394-08:00","updated_at":"2025-12-16T18:17:19.309394-08:00","dependencies":[{"issue_id":"bd-qioh","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.953559-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-qkw9","title":"Run bump-version.sh {{version}}","description":"Run ./scripts/bump-version.sh {{version}} to update version in all files","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:55:58.841424-08:00","updated_at":"2025-12-20T01:18:48.99813-08:00","closed_at":"2025-12-20T01:18:48.99813-08:00","close_reason":"Version bump complete","dependencies":[{"issue_id":"bd-qkw9","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:14.786027-08:00","created_by":"daemon"}]} +{"id":"bd-qqc","title":"Release v{{version}}","description":"Version bump workflow for beads release {{version}}.\n\n## Variables\n- `{{version}}` - The new version number (e.g., 0.31.0)\n- `{{date}}` - Release date (YYYY-MM-DD format)\n\n## Workflow Steps\n1. Kill running daemons\n2. Run tests and linting\n3. Bump version in all files (10 files total)\n4. Update cmd/bd/info.go with release notes\n5. Commit and push version bump\n6. Create and push git tag\n7. Update Homebrew formula\n8. Upgrade local Homebrew installation\n9. Verify installation\n\n## Files Updated by bump-version.sh\n- cmd/bd/version.go\n- .claude-plugin/plugin.json\n- .claude-plugin/marketplace.json\n- integrations/beads-mcp/pyproject.toml\n- integrations/beads-mcp/src/beads_mcp/__init__.py\n- README.md\n- npm-package/package.json\n- cmd/bd/templates/hooks/* (4 files)\n- CHANGELOG.md\n\n## Manual Step Required\n- cmd/bd/info.go - Add versionChanges entry with release notes","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-18T12:59:00.610371-08:00","updated_at":"2025-12-20T01:18:46.71424-08:00","closed_at":"2025-12-20T01:18:46.71424-08:00","close_reason":"Release complete","labels":["template"]} +{"id":"bd-qqc.1","title":"Update version to {{version}} in version.go","description":"Edit cmd/bd/version.go line 17:\n\n```go\nVersion = \"{{version}}\"\n```\n\nVerify with: `grep 'Version =' cmd/bd/version.go`","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:13.887087-08:00","updated_at":"2025-12-18T23:34:18.630067-08:00","closed_at":"2025-12-18T22:41:41.82664-08:00","dependencies":[{"issue_id":"bd-qqc.1","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:13.887655-08:00","created_by":"stevey"}]} +{"id":"bd-qqc.10","title":"Upgrade local Homebrew installation","description":"Upgrade bd via Homebrew:\n\n```bash\nbrew update\nbrew upgrade bd\n/opt/homebrew/bin/bd version # Verify shows {{version}}\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:37.60241-08:00","updated_at":"2025-12-18T23:07:55.686598-08:00","closed_at":"2025-12-18T22:52:00.331429-08:00","dependencies":[{"issue_id":"bd-qqc.10","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:37.603893-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.10","depends_on_id":"bd-qqc.9","type":"blocks","created_at":"2025-12-18T22:43:21.458817-08:00","created_by":"daemon"}]} +{"id":"bd-qqc.11","title":"Update go install bd to {{version}}","description":"Rebuild and install bd to ~/go/bin:\n\n```bash\ngo install ./cmd/bd\n~/go/bin/bd version # Verify shows {{version}}\n```\n\nNote: If ~/go/bin is in PATH before /opt/homebrew/bin, this is the version that runs by default.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:07:55.838013-08:00","updated_at":"2025-12-18T23:09:05.775582-08:00","closed_at":"2025-12-18T23:09:05.775582-08:00","dependencies":[{"issue_id":"bd-qqc.11","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T23:07:55.838432-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.11","depends_on_id":"bd-qqc.10","type":"blocks","created_at":"2025-12-18T23:08:19.629947-08:00","created_by":"daemon"}]} +{"id":"bd-qqc.12","title":"Restart daemon with {{version}}","description":"Restart the bd daemon to pick up new version:\n\n```bash\nbd daemon --stop\nbd daemon --start\nbd daemon --health # Verify Version: {{version}}\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:08:04.155448-08:00","updated_at":"2025-12-18T23:09:05.777375-08:00","closed_at":"2025-12-18T23:09:05.777375-08:00","dependencies":[{"issue_id":"bd-qqc.12","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T23:08:04.155832-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.12","depends_on_id":"bd-qqc.11","type":"blocks","created_at":"2025-12-18T23:08:19.779897-08:00","created_by":"daemon"}]} +{"id":"bd-qqc.13","title":"Upgrade beads-mcp to {{version}}","description":"Upgrade the MCP server via pip:\n\n```bash\npip install --upgrade beads-mcp\npip show beads-mcp | grep Version # Verify {{version}}\n```\n\nNote: Restart Claude Code or MCP session to use new version.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:08:04.318233-08:00","updated_at":"2025-12-18T23:09:05.77824-08:00","closed_at":"2025-12-18T23:09:05.77824-08:00","dependencies":[{"issue_id":"bd-qqc.13","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T23:08:04.318709-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.13","depends_on_id":"bd-qqc.11","type":"blocks","created_at":"2025-12-18T23:08:19.927825-08:00","created_by":"daemon"}]} +{"id":"bd-qqc.2","title":"Add {{version}} to versionChanges in info.go","description":"Add new entry at the TOP of versionChanges array in cmd/bd/info.go:\n\n```go\n{\n Version: \"{{version}}\",\n Date: \"{{date}}\",\n Changes: []string{\n // Add notable changes here\n },\n},\n```\n\nCopy changes from CHANGELOG.md [Unreleased] section.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:27.032117-08:00","updated_at":"2025-12-18T23:34:18.631996-08:00","closed_at":"2025-12-18T22:41:41.836137-08:00","dependencies":[{"issue_id":"bd-qqc.2","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:27.032746-08:00","created_by":"stevey"}]} +{"id":"bd-qqc.3","title":"Update CHANGELOG.md for {{version}}","description":"In CHANGELOG.md:\n\n1. Change `## [Unreleased]` section header to `## [{{version}}] - {{date}}`\n2. Add new empty `## [Unreleased]` section above it\n3. Review and clean up the changes list\n\nFormat:\n```markdown\n## [Unreleased]\n\n## [{{version}}] - {{date}}\n\n### Added\n- ...\n\n### Changed\n- ...\n\n### Fixed\n- ...\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:39.738561-08:00","updated_at":"2025-12-18T23:34:18.629213-08:00","closed_at":"2025-12-18T22:41:41.846609-08:00","dependencies":[{"issue_id":"bd-qqc.3","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:39.739138-08:00","created_by":"stevey"}]} +{"id":"bd-qqc.4","title":"Run tests and verify build","description":"Run the test suite to verify nothing is broken:\n\n```bash\n./scripts/test.sh\n```\n\nOr manually:\n```bash\ngo build ./cmd/bd/...\ngo test ./...\n```\n\nFix any failures before proceeding.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:52.308314-08:00","updated_at":"2025-12-18T23:34:18.631671-08:00","closed_at":"2025-12-18T22:41:41.856318-08:00","dependencies":[{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:52.308943-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc.1","type":"blocks","created_at":"2025-12-18T13:00:40.62142-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc.2","type":"blocks","created_at":"2025-12-18T13:00:45.820132-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc.3","type":"blocks","created_at":"2025-12-18T13:00:51.014568-08:00","created_by":"stevey"}]} +{"id":"bd-qqc.5","title":"Commit release v{{version}}","description":"Stage and commit the version bump:\n\n```bash\ngit add cmd/bd/version.go cmd/bd/info.go CHANGELOG.md\ngit commit -m \"release: v{{version}}\"\n```\n\nDo NOT push yet - tag first.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T13:00:04.097628-08:00","updated_at":"2025-12-18T23:34:18.630946-08:00","closed_at":"2025-12-18T22:41:41.864839-08:00","dependencies":[{"issue_id":"bd-qqc.5","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T13:00:04.098265-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.5","depends_on_id":"bd-qqc.4","type":"blocks","created_at":"2025-12-18T13:01:02.275008-08:00","created_by":"stevey"}]} +{"id":"bd-qqc.6","title":"Create git tag v{{version}}","description":"Create the release tag:\n\n```bash\ngit tag v{{version}}\n```\n\nVerify: `git tag | grep {{version}}`","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T13:00:15.495086-08:00","updated_at":"2025-12-18T23:34:18.632308-08:00","closed_at":"2025-12-18T22:41:41.874099-08:00","dependencies":[{"issue_id":"bd-qqc.6","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T13:00:15.496036-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.6","depends_on_id":"bd-qqc.5","type":"blocks","created_at":"2025-12-18T13:01:07.478315-08:00","created_by":"stevey"}]} +{"id":"bd-qqc.7","title":"Push release v{{version}} to remote","description":"Push the commit and tag:\n\n```bash\ngit push \u0026\u0026 git push --tags\n```\n\nVerify on GitHub that the tag appears in releases.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T13:00:26.933082-08:00","updated_at":"2025-12-18T23:34:18.630538-08:00","closed_at":"2025-12-18T22:41:41.882956-08:00","dependencies":[{"issue_id":"bd-qqc.7","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T13:00:26.933687-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.7","depends_on_id":"bd-qqc.6","type":"blocks","created_at":"2025-12-18T13:01:12.711161-08:00","created_by":"stevey"}]} +{"id":"bd-qqc.8","title":"Create and push git tag v{{version}}","description":"Create the release tag and push it:\n\n```bash\ngit tag v{{version}}\ngit push origin v{{version}}\n```\n\nThis triggers the GoReleaser GitHub Action to build release binaries.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:34.659927-08:00","updated_at":"2025-12-18T22:47:14.054232-08:00","closed_at":"2025-12-18T22:47:14.054232-08:00","dependencies":[{"issue_id":"bd-qqc.8","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:34.660248-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.8","depends_on_id":"bd-vgi5","type":"blocks","created_at":"2025-12-18T22:43:21.209529-08:00","created_by":"daemon"}]} +{"id":"bd-qqc.9","title":"Update Homebrew formula","description":"Update the Homebrew tap with new version:\n\n```bash\n./scripts/update-homebrew.sh {{version}}\n```\n\nThis script waits for GitHub Actions to complete (~5 min), then updates the formula with new SHA256 hashes.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:35.815096-08:00","updated_at":"2025-12-18T22:51:07.863862-08:00","closed_at":"2025-12-18T22:51:07.863862-08:00","dependencies":[{"issue_id":"bd-qqc.9","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:35.816752-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.9","depends_on_id":"bd-qqc.8","type":"blocks","created_at":"2025-12-18T22:43:21.332955-08:00","created_by":"daemon"}]} +{"id":"bd-r46","title":"Support --reason flag in daemon mode for reopen command","description":"The reopen.go command has a TODO at line 61 to add reason as a comment once RPC supports AddComment. Currently --reason flag is ignored in daemon mode with a warning.","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-21T18:55:10.773626-05:00","updated_at":"2025-11-21T18:55:10.773626-05:00"} +{"id":"bd-r6a","title":"Redesign workflow system: templates as native Beads","description":"## Problem\n\nThe current workflow system (YAML templates in cmd/bd/templates/workflows/) is architecturally flawed:\n\n1. **Out-of-band data plane** - YAML files are a parallel system outside Beads itself\n2. **Heavyweight DSL** - YAML is gross; even TOML would have been better, but neither is ideal\n3. **Not graph-native** - Beads IS already a dependency graph with priorities, so why reinvent it?\n4. **Can't use bd commands on templates** - They're opaque YAML, not viewable/editable Beads\n\n## The Right Design\n\n**Templates should be Beads themselves.**\n\nA \"workflow template\" should be:\n- An epic marked as a template (via label, type, or prefix like `tpl-`)\n- Child issues with dependencies between them (using normal bd dep)\n- Titles and descriptions containing `{{variable}}` placeholders\n- Normal priorities that control serialization order\n\n\"Instantiation\" becomes:\n1. Clone the template subgraph (epic + children + dependencies)\n2. Substitute variables in titles/descriptions\n3. Generate new IDs for all cloned issues\n4. Return the new epic ID\n\n## Benefits\n\n- **No YAML** - Templates are just Beads\n- **Use existing tools** - `bd show`, `bd edit`, `bd dep` work on templates\n- **Graph-native** - Dependencies are real Beads dependencies\n- **Simpler codebase** - Remove all the YAML parsing/workflow code\n- **Composable** - Templates can reference other templates\n\n## Tasks\n\n1. Delete the YAML workflow system code (revert recent push + remove existing workflow code)\n2. Design template marking convention (label? type? id prefix?)\n3. Implement `bd template create` or `bd clone --as-template`\n4. Implement `bd template instantiate \u003ctemplate-id\u003e --var key=value`\n5. Migrate version-bump workflow to native Beads template\n6. Update documentation","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-17T22:41:57.359643-08:00","updated_at":"2025-12-18T17:42:26.000769-08:00","closed_at":"2025-12-18T13:47:04.632525-08:00"} +{"id":"bd-r6a.1","title":"Revert/remove YAML workflow system","description":"Revert the recent commit and remove all YAML workflow code:\n\n1. `git revert aae8407a` (the commit we just pushed with workflow fixes)\n2. Remove `cmd/bd/templates/workflows/` directory\n3. Remove workflow.go or gut it to minimal stub\n4. Remove WorkflowTemplate types from internal/types/workflow.go\n5. Remove any workflow-related RPC handlers\n\nKeep only minimal scaffolding if needed for the new template system.","status":"closed","issue_type":"task","created_at":"2025-12-17T22:42:07.339684-08:00","updated_at":"2025-12-17T22:46:08.606088-08:00","closed_at":"2025-12-17T22:46:08.606088-08:00","dependencies":[{"issue_id":"bd-r6a.1","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:42:07.340117-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-r6a.2","title":"Implement subgraph cloning with variable substitution","description":"Core implementation of template instantiation:\n\n1. Add `bd template instantiate \u003ctemplate-id\u003e [--var key=value]...` command\n2. Implement subgraph loading:\n - Load template epic\n - Recursively load all children (and their children)\n - Load all dependencies between issues in the subgraph\n3. Implement variable substitution:\n - Scan titles and descriptions for `{{name}}` patterns\n - Replace with provided values\n - Error on missing required variables (or prompt interactively)\n4. Implement cloning:\n - Generate new IDs for all issues\n - Create cloned issues with substituted text\n - Remap and create dependencies\n5. Return the new epic ID\n\nConsider adding `--dry-run` flag to preview what would be created.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T22:43:25.179848-08:00","updated_at":"2025-12-17T23:02:29.034444-08:00","closed_at":"2025-12-17T23:02:29.034444-08:00","dependencies":[{"issue_id":"bd-r6a.2","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:25.180286-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-r6a.2","depends_on_id":"bd-r6a.1","type":"blocks","created_at":"2025-12-17T22:44:03.15413-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-r6a.3","title":"Create version-bump template as native Beads","description":"Migrate the version-bump workflow from YAML to a native Beads template:\n\n1. Create epic with template label: Release {{version}}\n2. Create child tasks for each step (update version files, changelog, commit, push, publish)\n3. Set up dependencies between tasks\n4. Add verification commands in task descriptions\n\nThis serves as both migration and validation of the new system.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T22:43:40.694931-08:00","updated_at":"2025-12-18T17:42:26.001149-08:00","closed_at":"2025-12-18T13:02:09.039457-08:00","dependencies":[{"issue_id":"bd-r6a.3","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:40.695392-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-r6a.3","depends_on_id":"bd-r6a.2","type":"blocks","created_at":"2025-12-17T22:44:03.311902-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-r6a.4","title":"Add bd template list command","description":"Add a convenience command to list available templates:\n\nbd template list\n\nThis is equivalent to 'bd list --label=template' but more discoverable.\nCould also show variable placeholders found in each template.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T22:43:47.525316-08:00","updated_at":"2025-12-17T23:02:45.700582-08:00","closed_at":"2025-12-17T23:02:45.700582-08:00","dependencies":[{"issue_id":"bd-r6a.4","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:47.525743-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-r6a.4","depends_on_id":"bd-r6a.2","type":"blocks","created_at":"2025-12-17T22:44:03.474353-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-r6a.5","title":"Update documentation for template system","description":"Update AGENTS.md and help text to document the new template system:\n\n- How to create a template (epic + template label + child issues)\n- How to define variables (just use {{name}} placeholders)\n- How to instantiate (bd template instantiate)\n- Migration from YAML workflows (if any users had custom ones)","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-17T22:43:55.461345-08:00","updated_at":"2025-12-18T17:42:26.001474-08:00","closed_at":"2025-12-18T13:46:53.446262-08:00","dependencies":[{"issue_id":"bd-r6a.5","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:55.461763-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-r6a.5","depends_on_id":"bd-r6a.3","type":"blocks","created_at":"2025-12-17T22:44:03.632404-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-r6a.5","depends_on_id":"bd-r6a.4","type":"blocks","created_at":"2025-12-17T22:44:03.788517-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-rgyd","title":"Split internal/storage/sqlite/queries.go (1586 lines)","description":"Code health review found queries.go is too large at 1586 lines with:\n\n- Issue scanning logic duplicated between transaction.go and queries.go\n- Timestamp defensive fixes duplicated in CreateIssue, CreateIssues, batch_ops.go\n- Multiple similar patterns that should be consolidated\n\nAlso: transaction.go at 1284 lines, dependencies.go at 893 lines\n\nRecommendation:\n1. Extract common scanning into shared function\n2. Consolidate timestamp defensive fixes\n3. Split queries.go by domain (CRUD, search, batch, events)","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-16T18:17:23.85869-08:00","updated_at":"2025-12-16T18:17:23.85869-08:00","dependencies":[{"issue_id":"bd-rgyd","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.062038-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-rp4o","title":"Deleted issues resurrect during bd sync (tombstones not propagating)","description":"## Problem\n\nWhen issues are deleted with bd delete --force, they get deleted from the local DB but resurrect during the next bd sync.\n\n## Reproduction\n\n1. Observe orphan warnings (bd-cb64c226.*, bd-cbed9619.*)\n2. Delete them: bd delete bd-cb64c226.1 ... --force\n3. Run bd sync\n4. Orphan warnings reappear - issues were resurrected!\n\n## Root Cause Hypothesis\n\nThe sync branch workflow (beads-sync) has the old state before deletions. When bd sync pulls from beads-sync and copies JSONL to main, the deleted issues are re-imported.\n\nTombstones may not be properly:\n1. Written to beads-sync during export\n2. Propagated during pull/merge\n3. Honored during import\n\n## Related\n\n- bd-7b7h: chicken-and-egg sync.branch bug (same workflow)\n- bd-ncwo: ID-based fallback matching to prevent ghost resurrection\n\n## Files to Investigate\n\n- cmd/bd/sync.go (export/import flow)\n- internal/syncbranch/worktree.go (PullFromSyncBranch, copyJSONLToMainRepo)\n- internal/importer/ (tombstone handling)","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T23:09:43.072696-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-rupw","title":"Run bump-version.sh 0.30.7","description":"Run ./scripts/bump-version.sh 0.30.7 to update version in all files","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649647-08:00","updated_at":"2025-12-19T22:57:31.512956-08:00","closed_at":"2025-12-19T22:57:31.512956-08:00","close_reason":"Already ran bump-version.sh","dependencies":[{"issue_id":"bd-rupw","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.653475-08:00","created_by":"stevey"}]} +{"id":"bd-s0qf","title":"GH#405: Fix prefix parsing with hyphens - multi-hyphen prefixes parsed incorrectly","description":"Fixed: ExtractIssuePrefix was falling back to first-hyphen for word-like suffixes, breaking multi-hyphen prefixes like 'hacker-news' and 'me-py-toolkit'.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:13:56.951359-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-s2t","title":"wish: a 'continue' or similar cmd/flag which means alter last issue","description":"so many time I create an issue and then have another thought: 'oh, before I did X and it crashed there was ZZZ happening' or 'actually that is P4 not P2'. It would be nice if when `bd {cmd}` is used without a {title} or {id} it just adds or updates the most recently touched issue.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-08T06:46:37.529160416-07:00","updated_at":"2025-12-08T06:46:37.529160416-07:00"} +{"id":"bd-sh4c","title":"Improve test coverage for cmd/bd/setup (28.4% ā†’ 50%)","description":"The setup package has only 28.4% test coverage. Setup commands are critical for first-time user experience.\n\nCurrent coverage: 28.4%\nTarget coverage: 50%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:04.409346-08:00","updated_at":"2025-12-13T21:01:18.98833-08:00"} +{"id":"bd-si4g","title":"Verify release artifacts","description":"Check GitHub releases page - binaries for darwin/linux/windows should be available","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:04.183029-08:00","updated_at":"2025-12-20T00:25:52.720816-08:00","closed_at":"2025-12-20T00:25:52.720816-08:00","close_reason":"Release v0.30.7 verified - all platform artifacts published","dependencies":[{"issue_id":"bd-si4g","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.173619-08:00","created_by":"daemon"},{"issue_id":"bd-si4g","depends_on_id":"bd-otli","type":"blocks","created_at":"2025-12-19T22:56:23.428507-08:00","created_by":"daemon"}]} +{"id":"bd-siz1","title":"GH#532: bd sync circular error (suggests running bd sync)","description":"bd sync error message recommends running bd sync to fix the bd sync error. Fix error handling to provide useful guidance. See GitHub issue #532.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:04:00.543573-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-su45","title":"Protect pinned issues from bd cleanup/compact","description":"Update bd cleanup and bd compact to never delete pinned issues, even if they are closed. Pinned issues should persist indefinitely as reference material.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:46.204783-08:00","updated_at":"2025-12-19T17:43:35.712617-08:00","closed_at":"2025-12-19T00:43:04.06406-08:00","dependencies":[{"issue_id":"bd-su45","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.64582-08:00","created_by":"daemon"},{"issue_id":"bd-su45","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.857586-08:00","created_by":"daemon"}]} +{"id":"bd-sumr","title":"Merge: bd-t4sb","description":"branch: polecat/capable\ntarget: main\nsource_issue: bd-t4sb\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:22:21.343724-08:00","updated_at":"2025-12-19T23:22:21.343724-08:00"} +{"id":"bd-svb5","title":"GH#505: Add bd reset/wipe command","description":"Add command to cleanly reset/wipe beads database. User reports painful manual process to start fresh. See GitHub issue #505.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:03:42.160966-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} +{"id":"bd-t4sb","title":"Work on beads-d8h: Fix prefix mismatch false positive wit...","description":"Work on beads-d8h: Fix prefix mismatch false positive with multi-hyphen prefixes like 'asianops-audit-' (GH#422). When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:19.545069-08:00","updated_at":"2025-12-20T00:26:12.606657-08:00","closed_at":"2025-12-19T23:21:45.471711-08:00"} +{"id":"bd-t4u1","title":"False positive detection by Kaspersky Antivirus (Trojan)","description":"Kaspersky Antivirus falsely detects beads (bd.exe v0.23.1) as a Trojan (PDM:Trojan.Win32.Generic) and removes it.\nEvent: Malicious object detected\nComponent: System Watcher\nObject name: bd.exe\n","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-20T18:56:12.498187-05:00","updated_at":"2025-11-20T18:56:12.498187-05:00"} +{"id":"bd-tbz3","title":"bd init UX Improvements","description":"bd init leaves users with incomplete setup, requiring manual bd doctor --fix. Issues found: (1) git hooks not installed if user declines prompt, (2) no auto-migration when CLI is upgraded, (3) stale merge driver configs from old versions. Fix by making bd init more robust with better defaults and auto-migration.","status":"open","priority":1,"issue_type":"epic","created_at":"2025-11-21T23:16:00.333543-08:00","updated_at":"2025-11-21T23:16:37.811233-08:00"} +{"id":"bd-tggf","title":"Code Health Review Dec 2025: Technical Debt Cleanup","description":"Epic grouping technical debt identified in the Dec 16, 2025 code health review.\n\n## Overall Health Grade: B (Solid foundation, needs cleanup)\n\n### P1 (High Priority):\n- bd-74w1: Consolidate duplicate path-finding utilities\n- bd-b6xo: Remove/fix ClearDirtyIssues() race condition\n- bd-b3og: Fix TestImportBugIntegration deadlock\n\n### P2 (Medium Priority):\n- bd-05a8: Split large files (doctor.go, sync.go)\n- bd-qioh: Standardize error handling patterns\n- bd-rgyd: Split queries.go (1586 lines)\n- bd-9g1z: Fix/remove TestFindJSONLPathDefault\n\n### P3 (Low Priority):\n- bd-ork0: Add comments to 30+ ignored errors\n- bd-4nqq: Remove dead test code in info_test.go\n- bd-dhza: Reduce global state in main.go\n\n## Key Areas:\n1. Code duplication in path utilities\n2. Large monolithic files (5 files \u003e1000 lines)\n3. Global state (25+ variables, 3 deprecated)\n4. Silent error suppression (30+ instances)\n5. Test gaps and dead test code\n6. Atomicity risks in batch operations","status":"open","priority":2,"issue_type":"epic","created_at":"2025-12-16T18:18:58.115507-08:00","updated_at":"2025-12-16T18:21:50.561709-08:00"} +{"id":"bd-thgk","title":"Improve test coverage for internal/compact (18.2% ā†’ 70%)","description":"The compact package has only 18.2% test coverage. This is a core package handling issue compaction and should have at least 70% coverage.\n\nKey functions needing tests:\n- runCompactSingle (0%)\n- runCompactAll (0%)\n- runCompactRPC (0%)\n- runCompactStatsRPC (0%)\n- runCompactAnalyze (0%)\n- runCompactApply (0%)\n- pruneDeletionsManifest (0%)\n\nCurrent coverage: 18.2%\nTarget coverage: 70%","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-13T20:42:58.455767-08:00","updated_at":"2025-12-13T21:01:15.070551-08:00"} +{"id":"bd-tm2p","title":"Polecats get stuck on interactive shell prompts (cp/mv/rm -i)","description":"During swarm operations, polecats frequently get stuck waiting for interactive prompts from shell commands like:\n- cp prompting 'overwrite file? (y/n)'\n- mv prompting 'overwrite file? (y/n)' \n- rm prompting 'remove file?'\n\nThis happens because macOS aliases or shell configs may have -i flags set by default.\n\nRoot cause: Claude Code runs commands that trigger interactive confirmation prompts, but cannot respond to them, causing the agent to hang indefinitely.\n\nObserved in: Multiple polecats during GH issues swarm (Dec 2024)\n- Derrick, Roustabout, Prospector, Warboy all got stuck on y/n prompts\n\nSuggested fixes:\n1. AGENTS.md should instruct agents to always use -f flag with cp/mv/rm\n2. Polecat startup could set shell aliases to use non-interactive versions\n3. bd prime hook could include guidance about non-interactive commands\n4. Consider detecting stuck prompts and auto-recovering","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-14T16:51:24.572271-08:00","updated_at":"2025-12-17T23:13:40.536312-08:00","closed_at":"2025-12-17T19:13:04.074424-08:00"} +{"id":"bd-toy3","title":"Test hook","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T18:33:39.717036-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-tvu3","title":"Improve test coverage for internal/beads (48.1% ā†’ 70%)","description":"The beads package is a core package with 48.1% coverage. As the primary package for issue management, it should have at least 70% coverage.\n\nCurrent coverage: 48.1%\nTarget coverage: 70%","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-13T20:42:59.739142-08:00","updated_at":"2025-12-13T21:01:14.874359-08:00"} +{"id":"bd-u0g9","title":"GH#405: Prefix parsing with hyphens treats first segment as prefix","description":"Prefix me-py-toolkit gets parsed as just me- when detecting mismatches. Fix prefix parsing to handle multi-hyphen prefixes. See GitHub issue #405.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:18.354066-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-umbf","title":"Design contributor namespace isolation for beads pollution prevention","description":"## Problem\n\nWhen contributors work on beads-the-project using beads-the-tool, their personal work-tracking issues leak into PRs. The .beads/issues.jsonl is intentionally tracked (it's the project's issue database), but contributors' local issues pollute the diff.\n\nThis is a recursion problem unique to self-hosting projects.\n\n## Possible Solutions to Explore\n\n1. **Contributor namespaces** - Each contributor gets a private prefix (e.g., `bd-steve-xxxx`) that's gitignored or filtered\n2. **Separate database** - Contributors use BEADS_DIR pointing elsewhere for personal tracking\n3. **Issue ownership/visibility flags** - Mark issues as \"local-only\" vs \"project\"\n4. **Prefix-based filtering** - Configure which prefixes are committed vs ignored\n\n## Design Considerations\n\n- Should be zero-friction for contributors (no manual setup)\n- Must not break existing workflows\n- Needs to work with sync/collaboration features\n- Consider: what if a \"personal\" issue graduates to \"project\" issue?\n\n## Expansion Needed\n\nThis is a placeholder. Needs detailed design exploration before implementation.","status":"open","priority":2,"issue_type":"feature","created_at":"2025-12-13T18:00:29.638743-08:00","updated_at":"2025-12-13T18:00:41.345673-08:00"} +{"id":"bd-uqfn","title":"Work on beads-wkt: Output control parameters for MCP tool...","description":"Work on beads-wkt: Output control parameters for MCP tools (GH#622). Add brief, fields, max_description_length params to ready/list/show. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:57:10.675535-08:00","updated_at":"2025-12-20T00:26:12.606293-08:00","closed_at":"2025-12-19T23:28:25.362931-08:00"} +{"id":"bd-usro","title":"Rename 'template instantiate' to 'mol bond'","description":"Rename the template instantiation command to match molecule metaphor.\n\nCurrent: bd template instantiate \u003cid\u003e --var key=value\nTarget: bd mol bond \u003cid\u003e --var key=value\n\nChanges needed:\n- Add 'mol' command group (or extend existing)\n- Add 'bond' subcommand that wraps template instantiate logic\n- Keep 'template instantiate' as deprecated alias for backward compat\n- Update help text and docs to use molecule terminology\n\nThe 'bond' verb captures:\n1. Chemistry metaphor (molecules bond to form structures)\n2. Dependency linking (child issues bonded in a DAG)\n3. Short and active\n\nSee also: molecule execution model in Gas Town","status":"open","priority":1,"issue_type":"feature","created_at":"2025-12-20T16:56:37.582795-08:00","updated_at":"2025-12-20T16:56:37.582795-08:00"} +{"id":"bd-uutv","title":"Work on beads-rs0: Namepool configuration for themed pole...","description":"Work on beads-rs0: Namepool configuration for themed polecat names. See bd show beads-rs0 for full details.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T21:49:48.129778-08:00","updated_at":"2025-12-19T21:59:25.565894-08:00","closed_at":"2025-12-19T21:59:25.565894-08:00"} +{"id":"bd-vgi5","title":"Push version bump to GitHub","description":"git push origin main - triggers CI but no release yet.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:05.363604-08:00","updated_at":"2025-12-18T22:46:57.50777-08:00","closed_at":"2025-12-18T22:46:57.50777-08:00","dependencies":[{"issue_id":"bd-vgi5","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.87736-08:00","created_by":"daemon"},{"issue_id":"bd-vgi5","depends_on_id":"bd-3ggb","type":"blocks","created_at":"2025-12-18T22:43:21.078208-08:00","created_by":"daemon"}]} +{"id":"bd-vpan","title":"Re: Thread Test 2","description":"Got your message. Testing reply feature.","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:29.144352-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-vpan","depends_on_id":"bd-x36g","type":"replies-to","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} +{"id":"bd-vs9","title":"Fix unparam unused parameter in cmd/bd/doctor.go:541","description":"Linting issue: checkHooksQuick - path is unused (unparam) at cmd/bd/doctor.go:541:22. Error: func checkHooksQuick(path string) string {","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:17.02177046-07:00","updated_at":"2025-12-17T23:13:40.535743-08:00","closed_at":"2025-12-17T16:46:11.028332-08:00"} +{"id":"bd-w193","title":"Work on beads-399: Add omitempty to JSONL fields for smal...","description":"Work on beads-399: Add omitempty to JSONL fields for smaller notifications. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:37.440894-08:00","updated_at":"2025-12-20T00:26:12.607705-08:00","closed_at":"2025-12-19T23:23:09.542288-08:00"} +{"id":"bd-wc2","title":"Test body-file","description":"This is a test description from a file.\n\nIt has multiple lines.\n","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T17:27:20.508724-08:00","updated_at":"2025-12-17T17:28:33.83142-08:00","closed_at":"2025-12-17T17:28:33.83142-08:00"} +{"id":"bd-whgv","title":"Merge: bd-401h","description":"branch: polecat/rictus\ntarget: main\nsource_issue: bd-401h\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:20:37.854953-08:00","updated_at":"2025-12-19T23:20:37.854953-08:00"} +{"id":"bd-x1xs","title":"Work on beads-1ra: Add molecules.jsonl as separate catalo...","description":"Work on beads-1ra: Add molecules.jsonl as separate catalog file for template molecules","status":"in_progress","priority":2,"issue_type":"task","created_at":"2025-12-19T20:17:44.840032-08:00","updated_at":"2025-12-19T20:17:44.905944-08:00"} +{"id":"bd-x36g","title":"Thread Test 2","description":"Testing direct mode","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:16.470631-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} +{"id":"bd-xctp","title":"GH#519: bd sync fails when sync.branch is currently checked-out branch","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:06:05.319281-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-xj2e","title":"GH#522: Add --type flag to bd update command","description":"Add --type flag to bd update for changing issue type (task/epic/bug/feature). Storage layer already supports it. See GitHub issue #522.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:12.506583-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-y2v","title":"Refactor duplicate JSONL-from-git parsing code","description":"Both readFirstIssueFromGit() in init.go and importFromGit() in autoimport.go have similar code patterns for:\n1. Running git show \u003cref\u003e:\u003cpath\u003e\n2. Scanning the output with bufio.Scanner\n3. Parsing JSON lines\n\nCould be refactored to share a helper like:\n- readJSONLFromGit(gitRef, path string) ([]byte, error)\n- Or a streaming version: streamJSONLFromGit(gitRef, path string) (io.Reader, error)\n\nFiles:\n- cmd/bd/autoimport.go:225-256 (importFromGit)\n- cmd/bd/init.go:1212-1243 (readFirstIssueFromGit)\n\nPriority is low since code duplication is minimal and both functions work correctly.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-05T14:51:18.41124-08:00","updated_at":"2025-12-05T14:51:18.41124-08:00"} +{"id":"bd-y4vz","title":"Work on beads-eub: Consolidated context tool for MCP serv...","description":"Work on beads-eub: Consolidated context tool for MCP server (GH#636). Merge set_context, where_am_i, init into single 'context' tool. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:58.527144-08:00","updated_at":"2025-12-20T00:26:12.607357-08:00","closed_at":"2025-12-19T23:31:11.906952-08:00"} +{"id":"bd-y8bj","title":"Auto-detect identity from directory context for bd mail","description":"Currently bd mail inbox defaults to git user name, requiring --identity flag with exact format.\n\n## Problem\n- Mail sent to `gastown/crew/max`\n- Max runs `bd mail inbox` ā†’ defaults to 'Steve Yegge' (git user)\n- Max must know to use `--identity 'gastown/crew/max'` with exact slashes\n\n## Proposed Fix\nAuto-detect identity from directory context when in a Gas Town workspace:\n- In `/Users/stevey/gt/gastown/crew/max`, infer identity = `gastown/crew/max`\n- Pattern: `\u003ctown\u003e/\u003crig\u003e/\u003crole\u003e/\u003cname\u003e` ā†’ `\u003crig\u003e/\u003crole\u003e/\u003cname\u003e`\n\n## Additional Improvements\n1. Support GT_IDENTITY env var (set by gt crew at / session spawning)\n2. Support identity in .beads/config.yaml\n3. Normalize format: accept both slashes and dashes as equivalent\n\n## Context\nDiscovered during crew-to-crew work assignment. Max couldn't see mail despite correct nudge because identity defaulted wrong.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-20T17:22:53.938586-08:00","updated_at":"2025-12-20T17:58:51.034201-08:00","closed_at":"2025-12-20T17:58:51.034201-08:00","close_reason":"Obsolete - bd mail commands removed, mail now in Gas Town"} +{"id":"bd-y8tn","title":"Test Molecule","description":"A test molecule","status":"closed","priority":2,"issue_type":"molecule","created_at":"2025-12-19T18:30:24.491279-08:00","updated_at":"2025-12-19T18:31:12.49898-08:00","closed_at":"2025-12-19T18:31:12.49898-08:00","close_reason":"test molecule - deleting"} +{"id":"bd-yck","title":"Fix checkExistingBeadsData to be worktree-aware","description":"The checkExistingBeadsData function in cmd/bd/init.go checks for .beads in the current working directory, but for worktrees it should check the main repository root instead. This prevents proper worktree compatibility.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-07T16:48:32.082776345-07:00","updated_at":"2025-12-07T16:48:32.082776345-07:00"} +{"id":"bd-ykd9","title":"Add bd doctor --fix flag to automatically repair issues","description":"Implement a --fix flag for bd doctor that can automatically repair detected issues.\n\nRequirements:\n- Add --fix flag to bd doctor command\n- Show all fixable issues and prompt for confirmation before applying fixes\n- Organize fix implementations under doctor/fix/\u003ctype_of_fix\u003e.go\n- Each fix type should have its own file (e.g., doctor/fix/hooks.go, doctor/fix/sync.go)\n- Display what will be fixed and ask user to confirm (Y/n) before proceeding\n- Support fixing issues like:\n - Missing or broken git hooks\n - Sync problems with remote\n - File permission issues\n - Any other auto-repairable issues doctor detects\n\nImplementation notes:\n- Maintain separation between detection (existing doctor code) and repair (new fix code)\n- Each fix should be idempotent and safe to run multiple times\n- Provide clear output about what was fixed\n- Log any fixes that fail with actionable error messages","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-14T18:17:48.411264-08:00","updated_at":"2025-11-14T18:17:58.88609-08:00"} +{"id":"bd-z86n","title":"Code Review: PR #551 - Persist close_reason to issues table","description":"Code review of PR #551 which fixes close_reason persistence bug.\n\n## Summary\nThe PR correctly fixes a bug where close_reason was only stored in the events table, not in the issues.close_reason column. This caused `bd show --json` to return empty close_reason.\n\n## What Was Fixed\n- āœ… CloseIssue now updates both close_reason and closed_at\n- āœ… ReOpenIssue clears both close_reason and closed_at\n- āœ… Comprehensive tests added for both storage and CLI layers\n- āœ… Clear documentation in queries.go about dual storage strategy\n\n## Quality Assessment\nāœ… Tests cover both storage layer and CLI JSON output\nāœ… Handles reopen case (clearing close_reason)\nāœ… Good comments explaining dual-storage design\nāœ… No known issues\n\n## Potential Followups\nSee linked issues for suggestions.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:06.887069-08:00","updated_at":"2025-12-14T14:25:06.887069-08:00"} +{"id":"bd-z8a6","title":"bd delete --from-file should add deleted issues to deletions manifest","description":"When using bd delete --from-file to bulk delete issues, the deleted issue IDs are not being added to the deletions.jsonl manifest.\n\nThis causes those issues to be resurrected during bd sync when git history scanning finds them in old commits.\n\nExpected: All deleted issues should be added to deletions.jsonl so they wont be reimported from git history.\n\nWorkaround: Manually add deletion records to deletions.jsonl.","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T01:48:14.099855-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-zc3","title":"Add --pinned and --no-pinned flags to bd list","description":"Add filtering flags to bd list: --pinned shows only pinned issues, --no-pinned excludes pinned issues. Default behavior shows all issues with a pin indicator.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:29.518028-08:00","updated_at":"2025-12-18T23:33:29.518028-08:00","dependencies":[{"issue_id":"bd-zc3","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.256764-08:00","created_by":"daemon"},{"issue_id":"bd-zc3","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.486361-08:00","created_by":"daemon"}]} +{"id":"bd-zclk","title":"Commit and push release","description":"git add -A \u0026\u0026 git commit \u0026\u0026 git push to trigger CI","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.6489-08:00","updated_at":"2025-12-19T22:57:58.978614-08:00","closed_at":"2025-12-19T22:57:58.978614-08:00","close_reason":"Pushed to main","dependencies":[{"issue_id":"bd-zclk","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.650043-08:00","created_by":"stevey"},{"issue_id":"bd-zclk","depends_on_id":"bd-hzvz","type":"blocks","created_at":"2025-12-19T22:56:48.650488-08:00","created_by":"stevey"}]} +{"id":"bd-ziy5","title":"GH#409: bd init uses issues.jsonl but docs say beads.jsonl","description":"bd init creates config referencing issues.jsonl but README/docs reference beads.jsonl as canonical. Standardize naming. See GitHub issue #409.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:58.109954-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-zwtq","title":"Run bd doctor at end of bd init to verify setup","description":"Run bd doctor diagnostics at end of bd init (after line 398 in init.go). If issues found, warn user immediately: 'āš  Setup incomplete. Run bd doctor --fix to complete setup.' Catches configuration problems before user encounters them in normal workflow.","status":"open","priority":1,"issue_type":"feature","created_at":"2025-11-21T23:16:09.596778-08:00","updated_at":"2025-11-21T23:16:27.781976-08:00","dependencies":[{"issue_id":"bd-zwtq","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:09.597617-08:00","created_by":"daemon","metadata":"{}"}]} diff --git a/examples/multiple-personas/README.md b/examples/multiple-personas/README.md index 5d8d90ea..1e45c030 100644 --- a/examples/multiple-personas/README.md +++ b/examples/multiple-personas/README.md @@ -662,4 +662,4 @@ bd dep add bd-uat1 bd-review1 --type blocks - [Multi-Phase Development](../multi-phase-development/) - Organize work by phase - [Team Workflow](../team-workflow/) - Collaborate across personas - [Contributor Workflow](../contributor-workflow/) - External contributions -- [Labels Documentation](../../LABELS.md) - Label management guide +- [Labels Documentation](../../docs/LABELS.md) - Label management guide From 2cb155eeba17e8a77f93a1d3c51a8e5aff3a324a Mon Sep 17 00:00:00 2001 From: Steve Yegge Date: Sat, 20 Dec 2025 18:23:02 -0800 Subject: [PATCH 05/18] docs: add v0.32.0 changelog and info.go entries MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Prepare for v0.32.0 release with: - Removed bd mail commands (orchestration belongs elsewhere) - Data model unchanged (type=message, Sender, etc.) - Symlink fix (PR#665) - Docs fix (GH#666) šŸ¤– Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 --- .beads/issues.jsonl | 2 +- CHANGELOG.md | 18 ++++++++++++++++++ cmd/bd/info.go | 11 +++++++++++ 3 files changed, 30 insertions(+), 1 deletion(-) diff --git a/.beads/issues.jsonl b/.beads/issues.jsonl index cbcba8ac..102489e2 100644 --- a/.beads/issues.jsonl +++ b/.beads/issues.jsonl @@ -80,7 +80,7 @@ {"id":"bd-abjw","title":"Consider consolidating config.yaml parsing into shared utility","description":"Multiple places parse config.yaml with custom structs:\n\n1. **autoimport.go:148** - `localConfig{SyncBranch}`\n2. **main.go:310** - strings.Contains for no-db (fragile, see bd-r6k2)\n3. **doctor.go:863** - strings.Contains for no-db (fragile, see bd-r6k2)\n4. **internal/config/config.go** - Uses viper (but caches at startup, problematic for tests)\n\nConsider creating a shared utility in `internal/configfile/` or extending the viper config:\n\n```go\n// internal/configfile/yaml.go\ntype YAMLConfig struct {\n SyncBranch string `yaml:\"sync-branch\"`\n NoDb bool `yaml:\"no-db\"`\n IssuePrefix string `yaml:\"issue-prefix\"`\n Author string `yaml:\"author\"`\n}\n\nfunc LoadYAML(beadsDir string) (*YAMLConfig, error) {\n // Parse config.yaml with proper YAML library\n}\n```\n\nBenefits:\n- Single source of truth for config.yaml structure\n- Proper YAML parsing everywhere\n- Easier to add new config fields\n\nTrade-off: May add complexity for simple one-off reads.","status":"open","priority":4,"issue_type":"task","created_at":"2025-12-07T02:03:26.067311-08:00","updated_at":"2025-12-07T02:03:26.067311-08:00"} {"id":"bd-adoe","title":"Add --hard flag to bd cleanup to permanently cull tombstones before cutoff date","description":"Currently tombstones persist for 30 days before cleanup prunes them. Need an official way to force-cull tombstones earlier than the default TTL, for scenarios like cleaning house after extended absence where resurrection from old clones is not a concern. Proposed: bd cleanup --hard --older-than N to bypass the 30-day tombstone TTL.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:17:31.064914-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} {"id":"bd-aec5439f","title":"Update LINTING.md with current baseline","description":"After cleanup, document the remaining acceptable baseline in LINTING.md so we can track regression.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-27T18:53:10.38679-07:00","updated_at":"2025-12-17T22:58:34.564854-08:00","closed_at":"2025-12-17T22:58:34.564854-08:00","close_reason":"Closed"} -{"id":"bd-ao0s","title":"bd graph crashes with --no-daemon on closed issues","description":"The `bd graph` command panics with nil pointer dereference when using `--no-daemon` flag on an issue with closed children.\n\n**Reproduction:**\n```bash\nbd graph bd-qqc --no-daemon\n# panic: runtime error: invalid memory address or nil pointer dereference\n# in main.computeDependencyCounts\n```\n\n**Stack trace:**\n```\npanic: runtime error: invalid memory address or nil pointer dereference\n[signal SIGSEGV: segmentation violation code=0x2 addr=0x20 pc=0x1010bdfb0]\n\ngoroutine 1 [running]:\nmain.computeDependencyCounts(...)\n /Users/stevey/gt/beads/crew/emma/cmd/bd/graph.go:428\nmain.renderGraph(0x1400033bb80, 0x0)\n /Users/stevey/gt/beads/crew/emma/cmd/bd/graph.go:307 +0x300\n```\n\n**Location:** cmd/bd/graph.go:428 - computeDependencyCounts() not handling nil case","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-18T22:57:36.972585-08:00","updated_at":"2025-12-18T22:57:36.972585-08:00"} +{"id":"bd-ao0s","title":"bd graph crashes with --no-daemon on closed issues","description":"The `bd graph` command panics with nil pointer dereference when using `--no-daemon` flag on an issue with closed children.\n\n**Reproduction:**\n```bash\nbd graph bd-qqc --no-daemon\n# panic: runtime error: invalid memory address or nil pointer dereference\n# in main.computeDependencyCounts\n```\n\n**Stack trace:**\n```\npanic: runtime error: invalid memory address or nil pointer dereference\n[signal SIGSEGV: segmentation violation code=0x2 addr=0x20 pc=0x1010bdfb0]\n\ngoroutine 1 [running]:\nmain.computeDependencyCounts(...)\n /Users/stevey/gt/beads/crew/emma/cmd/bd/graph.go:428\nmain.renderGraph(0x1400033bb80, 0x0)\n /Users/stevey/gt/beads/crew/emma/cmd/bd/graph.go:307 +0x300\n```\n\n**Location:** cmd/bd/graph.go:428 - computeDependencyCounts() not handling nil case","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-18T22:57:36.972585-08:00","updated_at":"2025-12-20T18:12:46.798548-08:00","closed_at":"2025-12-20T18:12:46.798548-08:00","close_reason":"Already fixed in commit 3d8cf154"} {"id":"bd-au0","title":"Command Set Standardization \u0026 Flag Consistency","description":"Comprehensive improvements to bd command set based on 2025 audit findings.\n\n## Background\nSee docs/command-audit-2025.md for detailed analysis.\n\n## Goals\n1. Standardize flag naming and behavior across all commands\n2. Add missing flags for feature parity\n3. Fix naming confusion\n4. Improve consistency in JSON output\n\n## Success Criteria\n- All mutating commands support --dry-run (no --preview variants)\n- bd update supports label operations\n- bd search has filter parity with bd list\n- Priority flags accept both int and P0-P4 format everywhere\n- JSON output is consistent across all commands","status":"open","priority":2,"issue_type":"epic","created_at":"2025-11-21T21:05:55.672749-05:00","updated_at":"2025-11-21T21:05:55.672749-05:00"} {"id":"bd-au0.10","title":"Add global verbosity flags (--verbose, --quiet)","description":"Add consistent verbosity controls across all commands.\n\n**Current state:**\n- bd init has --quiet flag\n- No other commands have verbosity controls\n- Debug output controlled by BD_VERBOSE env var\n\n**Proposal:**\nAdd persistent flags:\n- --verbose / -v: Enable debug output\n- --quiet / -q: Suppress non-essential output\n\n**Implementation:**\n- Add to rootCmd.PersistentFlags()\n- Replace BD_VERBOSE checks with flag checks\n- Standardize output levels:\n * Quiet: Errors only\n * Normal: Errors + success messages\n * Verbose: Errors + success + debug info\n\n**Files to modify:**\n- cmd/bd/main.go (add flags)\n- internal/debug/debug.go (respect flags)\n- Update all commands to respect quiet mode\n\n**Testing:**\n- Verify --verbose shows debug output\n- Verify --quiet suppresses normal output\n- Ensure errors always show regardless of mode","status":"open","priority":3,"issue_type":"task","created_at":"2025-11-21T21:08:21.600209-05:00","updated_at":"2025-11-21T21:08:21.600209-05:00","dependencies":[{"issue_id":"bd-au0.10","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:08:21.602557-05:00","created_by":"daemon","metadata":"{}"}]} {"id":"bd-au0.5","title":"Add date and priority filters to bd search","description":"Add filter parity with bd list for consistent querying.\n\n**Missing filters to add:**\n- --priority, --priority-min, --priority-max\n- --created-after, --created-before\n- --updated-after, --updated-before\n- --closed-after, --closed-before\n- --empty-description, --no-assignee, --no-labels\n- --desc-contains, --notes-contains\n\n**Files to modify:**\n- cmd/bd/search.go\n- internal/rpc/protocol.go (SearchArgs)\n- internal/storage/storage.go (Search method)\n\n**Testing:**\n- All filter combinations\n- Date format parsing\n- Daemon and direct mode","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-21T21:07:05.496726-05:00","updated_at":"2025-11-21T21:07:05.496726-05:00","dependencies":[{"issue_id":"bd-au0.5","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:05.497762-05:00","created_by":"daemon","metadata":"{}"}]} diff --git a/CHANGELOG.md b/CHANGELOG.md index aa7f21a0..e8c18ed8 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -7,6 +7,24 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ## [Unreleased] +## [0.32.0] - 2025-12-20 + +### Changed + +- **Removed `bd mail` commands** - Mail is orchestration, not data plane + - Removed: `bd mail send`, `bd mail inbox`, `bd mail read`, `bd mail ack`, `bd mail reply` + - The underlying data model is unchanged: `type=message`, `Sender`, `Ephemeral`, `replies_to` fields remain + - Orchestration tools should implement mail interfaces on top of the beads data model + - This follows the principle that beads is a data store, not a workflow engine + +### Fixed + +- **Symlink preservation in atomicWriteFile** (PR#665) - Thanks @qmx + - `bd setup claude` no longer clobbers nix/home-manager managed `~/.claude/settings.json` + - New `ResolveForWrite()` helper writes to symlink target instead of replacing symlink + +- **Broken link in examples** (GH#666) - Fixed LABELS.md link in multiple-personas example + ## [0.31.0] - 2025-12-20 ### Added diff --git a/cmd/bd/info.go b/cmd/bd/info.go index 71413ff0..fe6e2000 100644 --- a/cmd/bd/info.go +++ b/cmd/bd/info.go @@ -287,6 +287,17 @@ type VersionChange struct { // versionChanges contains agent-actionable changes for recent versions var versionChanges = []VersionChange{ + { + Version: "0.32.0", + Date: "2025-12-20", + Changes: []string{ + "REMOVED: bd mail commands (send, inbox, read, ack, reply) - Mail is orchestration, not data plane", + "NOTE: Data model unchanged - type=message, Sender, Ephemeral, replies_to fields remain", + "NOTE: Orchestration tools should implement mail UI on top of beads data model", + "FIX: Symlink preservation in atomicWriteFile (PR#665) - bd setup no longer clobbers nix/home-manager configs", + "FIX: Broken link to LABELS.md in examples (GH#666)", + }, + }, { Version: "0.31.0", Date: "2025-12-20", From d256d45d4bee01fa7ee6b756ae40ad319cd02ac6 Mon Sep 17 00:00:00 2001 From: Steve Yegge Date: Sat, 20 Dec 2025 18:23:21 -0800 Subject: [PATCH 06/18] chore: bump version to 0.32.0 MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit šŸ¤– Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 --- .claude-plugin/marketplace.json | 2 +- .claude-plugin/plugin.json | 2 +- CHANGELOG.md | 2 ++ cmd/bd/templates/hooks/post-checkout | 2 +- cmd/bd/templates/hooks/post-merge | 2 +- cmd/bd/templates/hooks/pre-commit | 2 +- cmd/bd/templates/hooks/pre-push | 2 +- cmd/bd/version.go | 2 +- integrations/beads-mcp/pyproject.toml | 2 +- integrations/beads-mcp/src/beads_mcp/__init__.py | 2 +- npm-package/package.json | 2 +- 11 files changed, 12 insertions(+), 10 deletions(-) diff --git a/.claude-plugin/marketplace.json b/.claude-plugin/marketplace.json index 23cfeaf5..bf88520c 100644 --- a/.claude-plugin/marketplace.json +++ b/.claude-plugin/marketplace.json @@ -9,7 +9,7 @@ "name": "beads", "source": "./", "description": "AI-supervised issue tracker for coding workflows", - "version": "0.31.0" + "version": "0.32.0" } ] } diff --git a/.claude-plugin/plugin.json b/.claude-plugin/plugin.json index 260d02ee..19cff859 100644 --- a/.claude-plugin/plugin.json +++ b/.claude-plugin/plugin.json @@ -1,7 +1,7 @@ { "name": "beads", "description": "AI-supervised issue tracker for coding workflows. Manage tasks, discover work, and maintain context with simple CLI commands.", - "version": "0.31.0", + "version": "0.32.0", "author": { "name": "Steve Yegge", "url": "https://github.com/steveyegge" diff --git a/CHANGELOG.md b/CHANGELOG.md index e8c18ed8..579a3ddf 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -9,6 +9,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ## [0.32.0] - 2025-12-20 +## [0.32.0] - 2025-12-20 + ### Changed - **Removed `bd mail` commands** - Mail is orchestration, not data plane diff --git a/cmd/bd/templates/hooks/post-checkout b/cmd/bd/templates/hooks/post-checkout index 7cfc500f..c63997fd 100755 --- a/cmd/bd/templates/hooks/post-checkout +++ b/cmd/bd/templates/hooks/post-checkout @@ -1,6 +1,6 @@ #!/bin/sh # bd-shim v1 -# bd-hooks-version: 0.31.0 +# bd-hooks-version: 0.32.0 # # bd (beads) post-checkout hook - thin shim # diff --git a/cmd/bd/templates/hooks/post-merge b/cmd/bd/templates/hooks/post-merge index c3581d75..567a9fb3 100755 --- a/cmd/bd/templates/hooks/post-merge +++ b/cmd/bd/templates/hooks/post-merge @@ -1,6 +1,6 @@ #!/bin/sh # bd-shim v1 -# bd-hooks-version: 0.31.0 +# bd-hooks-version: 0.32.0 # # bd (beads) post-merge hook - thin shim # diff --git a/cmd/bd/templates/hooks/pre-commit b/cmd/bd/templates/hooks/pre-commit index c540f60f..7dc18c81 100755 --- a/cmd/bd/templates/hooks/pre-commit +++ b/cmd/bd/templates/hooks/pre-commit @@ -1,6 +1,6 @@ #!/bin/sh # bd-shim v1 -# bd-hooks-version: 0.31.0 +# bd-hooks-version: 0.32.0 # # bd (beads) pre-commit hook - thin shim # diff --git a/cmd/bd/templates/hooks/pre-push b/cmd/bd/templates/hooks/pre-push index 1541b0d3..b34f0e03 100755 --- a/cmd/bd/templates/hooks/pre-push +++ b/cmd/bd/templates/hooks/pre-push @@ -1,6 +1,6 @@ #!/bin/sh # bd-shim v1 -# bd-hooks-version: 0.31.0 +# bd-hooks-version: 0.32.0 # # bd (beads) pre-push hook - thin shim # diff --git a/cmd/bd/version.go b/cmd/bd/version.go index 38f2b4db..27b6aad2 100644 --- a/cmd/bd/version.go +++ b/cmd/bd/version.go @@ -14,7 +14,7 @@ import ( var ( // Version is the current version of bd (overridden by ldflags at build time) - Version = "0.31.0" + Version = "0.32.0" // Build can be set via ldflags at compile time Build = "dev" // Commit and branch the git revision the binary was built from (optional ldflag) diff --git a/integrations/beads-mcp/pyproject.toml b/integrations/beads-mcp/pyproject.toml index 8a4efafc..6fd321c9 100644 --- a/integrations/beads-mcp/pyproject.toml +++ b/integrations/beads-mcp/pyproject.toml @@ -1,6 +1,6 @@ [project] name = "beads-mcp" -version = "0.31.0" +version = "0.32.0" description = "MCP server for beads issue tracker." readme = "README.md" requires-python = ">=3.10" diff --git a/integrations/beads-mcp/src/beads_mcp/__init__.py b/integrations/beads-mcp/src/beads_mcp/__init__.py index 68d4e347..822dcee2 100644 --- a/integrations/beads-mcp/src/beads_mcp/__init__.py +++ b/integrations/beads-mcp/src/beads_mcp/__init__.py @@ -4,4 +4,4 @@ This package provides an MCP (Model Context Protocol) server that exposes beads (bd) issue tracker functionality to MCP Clients. """ -__version__ = "0.31.0" +__version__ = "0.32.0" diff --git a/npm-package/package.json b/npm-package/package.json index e1b68da9..6092a6f4 100644 --- a/npm-package/package.json +++ b/npm-package/package.json @@ -1,6 +1,6 @@ { "name": "@beads/bd", - "version": "0.31.0", + "version": "0.32.0", "description": "Beads issue tracker - lightweight memory system for coding agents with native binary support", "main": "bin/bd.js", "bin": { From 1f3b43853de5ebeca945b4c4c1cc9040f4f99249 Mon Sep 17 00:00:00 2001 From: Steve Yegge Date: Sat, 20 Dec 2025 18:30:36 -0800 Subject: [PATCH 07/18] docs(scripts): add molecule workflow note to bump-version.sh MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Document that version bumps should be done via molecule bonding for guided, resumable releases. The bd-6s61 template creates child beads for each release step. Until bd mol bond is implemented (bd-usro), use bd template instantiate. šŸ¤– Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 --- scripts/bump-version.sh | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/scripts/bump-version.sh b/scripts/bump-version.sh index f2ce1dbd..e37ca759 100755 --- a/scripts/bump-version.sh +++ b/scripts/bump-version.sh @@ -1,6 +1,29 @@ #!/bin/bash set -e +# ============================================================================= +# MOLECULE WORKFLOW (Recommended) +# ============================================================================= +# +# This script handles the mechanical version updates, but the full release +# workflow is captured as a molecule. For guided, resumable releases: +# +# bd template instantiate bd-6s61 --var version=X.Y.Z --assignee +# +# This creates child beads for each release step. The molecule survives +# session restarts - any agent can pick up where another left off. +# +# The molecule (bd-6s61 "Version Bump: {{version}}") includes: +# 1. Update CHANGELOG.md and info.go +# 2. Run this script (bump-version.sh) +# 3. Run tests and linting +# 4. Commit, tag, push +# 5. Update Homebrew formula +# 6. Verify installation +# +# Until bd mol bond is implemented (bd-usro), use bd molecule instantiate. +# ============================================================================= + # Colors for output RED='\033[0;31m' GREEN='\033[0;32m' From 5d2daf2e1ef483cf2aff1f7bf8b9c37fb84563cd Mon Sep 17 00:00:00 2001 From: Steve Yegge Date: Sat, 20 Dec 2025 19:57:16 -0800 Subject: [PATCH 08/18] fix(pin): add 'pinned' field to allowed update fields (gt-zr0a) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit The 'bd pin' command was failing with "invalid field for update: pinned" because the pinned field was missing from allowedUpdateFields. Fixes: - Add 'pinned' to allowedUpdateFields in queries.go - Update importer to include pinned field in updates during import - Add equalBool comparator for IssueDataChanged to detect pinned changes - Fix stats query to count pinned=1 instead of status='pinned' - Fix pinIndicator in list.go to check issue.Pinned instead of status This unblocks gt mail --pinned functionality. šŸ¤– Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 --- cmd/bd/list.go | 4 ++-- internal/importer/importer.go | 4 ++++ internal/importer/utils.go | 11 +++++++++++ internal/storage/sqlite/events.go | 2 +- internal/storage/sqlite/queries.go | 2 ++ 5 files changed, 20 insertions(+), 3 deletions(-) diff --git a/cmd/bd/list.go b/cmd/bd/list.go index 7b6b1a9c..5011f52e 100644 --- a/cmd/bd/list.go +++ b/cmd/bd/list.go @@ -38,9 +38,9 @@ func parseTimeFlag(s string) (time.Time, error) { return time.Time{}, fmt.Errorf("unable to parse time %q (try formats: 2006-01-02, 2006-01-02T15:04:05, or RFC3339)", s) } -// pinIndicator returns a pushpin emoji prefix for pinned issues (bd-18b) +// pinIndicator returns a pushpin emoji prefix for pinned issues (bd-18b, bd-7h5) func pinIndicator(issue *types.Issue) string { - if issue.Status == types.StatusPinned { + if issue.Pinned { return "šŸ“Œ " } return "" diff --git a/internal/importer/importer.go b/internal/importer/importer.go index 88db09b3..5d21c75f 100644 --- a/internal/importer/importer.go +++ b/internal/importer/importer.go @@ -554,6 +554,8 @@ func upsertIssues(ctx context.Context, sqliteStore *sqlite.SQLiteStorage, issues updates["acceptance_criteria"] = incoming.AcceptanceCriteria updates["notes"] = incoming.Notes updates["closed_at"] = incoming.ClosedAt + // Pinned field (bd-7h5) + updates["pinned"] = incoming.Pinned if incoming.Assignee != "" { updates["assignee"] = incoming.Assignee @@ -647,6 +649,8 @@ func upsertIssues(ctx context.Context, sqliteStore *sqlite.SQLiteStorage, issues updates["acceptance_criteria"] = incoming.AcceptanceCriteria updates["notes"] = incoming.Notes updates["closed_at"] = incoming.ClosedAt + // Pinned field (bd-7h5) + updates["pinned"] = incoming.Pinned if incoming.Assignee != "" { updates["assignee"] = incoming.Assignee diff --git a/internal/importer/utils.go b/internal/importer/utils.go index b6828730..0cf5c6ab 100644 --- a/internal/importer/utils.go +++ b/internal/importer/utils.go @@ -112,6 +112,15 @@ func (fc *fieldComparator) equalPriority(existing int, newVal interface{}) bool return ok && int64(existing) == newPriority } +func (fc *fieldComparator) equalBool(existingVal bool, newVal interface{}) bool { + switch t := newVal.(type) { + case bool: + return existingVal == t + default: + return false + } +} + func (fc *fieldComparator) checkFieldChanged(key string, existing *types.Issue, newVal interface{}) bool { switch key { case "title": @@ -134,6 +143,8 @@ func (fc *fieldComparator) checkFieldChanged(key string, existing *types.Issue, return !fc.equalStr(existing.Assignee, newVal) case "external_ref": return !fc.equalPtrStr(existing.ExternalRef, newVal) + case "pinned": + return !fc.equalBool(existing.Pinned, newVal) default: return false } diff --git a/internal/storage/sqlite/events.go b/internal/storage/sqlite/events.go index 1bdd11e8..3e24b692 100644 --- a/internal/storage/sqlite/events.go +++ b/internal/storage/sqlite/events.go @@ -121,7 +121,7 @@ func (s *SQLiteStorage) GetStatistics(ctx context.Context) (*types.Statistics, e COALESCE(SUM(CASE WHEN status = 'closed' THEN 1 ELSE 0 END), 0) as closed, COALESCE(SUM(CASE WHEN status = 'deferred' THEN 1 ELSE 0 END), 0) as deferred, COALESCE(SUM(CASE WHEN status = 'tombstone' THEN 1 ELSE 0 END), 0) as tombstone, - COALESCE(SUM(CASE WHEN status = 'pinned' THEN 1 ELSE 0 END), 0) as pinned + COALESCE(SUM(CASE WHEN pinned = 1 THEN 1 ELSE 0 END), 0) as pinned FROM issues `).Scan(&stats.TotalIssues, &stats.OpenIssues, &stats.InProgressIssues, &stats.ClosedIssues, &stats.DeferredIssues, &stats.TombstoneIssues, &stats.PinnedIssues) if err != nil { diff --git a/internal/storage/sqlite/queries.go b/internal/storage/sqlite/queries.go index 13bca543..b9c90d2d 100644 --- a/internal/storage/sqlite/queries.go +++ b/internal/storage/sqlite/queries.go @@ -558,6 +558,8 @@ var allowedUpdateFields = map[string]bool{ // Messaging fields (bd-kwro) "sender": true, "ephemeral": true, + // Pinned field (bd-7h5) + "pinned": true, // NOTE: replies_to, relates_to, duplicate_of, superseded_by removed per Decision 004 // Use AddDependency() to create graph edges instead } From 3743e9ed7090b8a87e0255e9546f32b105716b68 Mon Sep 17 00:00:00 2001 From: Steve Yegge Date: Sat, 20 Dec 2025 20:50:33 -0800 Subject: [PATCH 09/18] chore: remove obsolete BD_GUIDE.md references MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit BD_GUIDE.md generation was removed in 125e36d5 when bd onboard was simplified to output a minimal snippet pointing to bd prime. This commit: - Removes stale BD_GUIDE.md references from CLAUDE.md - Removes dead checkAndSuggestBDGuideUpdate() code from version_tracking.go - Removes BD_GUIDE.md from UNINSTALLING.md file list Closes #660 (already fixed in v0.30.7 via f1380e8b) šŸ¤– Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 --- CLAUDE.md | 9 +----- cmd/bd/version_tracking.go | 58 -------------------------------------- docs/UNINSTALLING.md | 1 - 3 files changed, 1 insertion(+), 67 deletions(-) diff --git a/CLAUDE.md b/CLAUDE.md index 74a12177..7cd89f20 100644 --- a/CLAUDE.md +++ b/CLAUDE.md @@ -113,19 +113,12 @@ bd info --whats-new # 2. Update git hooks to match new bd version bd hooks install -# 3. Regenerate BD_GUIDE.md if it exists (optional but recommended) -bd onboard --output .beads/BD_GUIDE.md - -# 4. Check for any outdated hooks (optional) +# 3. Check for any outdated hooks (optional) bd info # Shows warnings if hooks are outdated ``` **Why update hooks?** Git hooks (pre-commit, post-merge, pre-push) are versioned with bd. Outdated hooks may miss new auto-sync features or bug fixes. Running `bd hooks install` ensures hooks match your bd version. -**About BD_GUIDE.md:** This is an optional auto-generated file that separates bd-specific instructions from project-specific ones. If your project uses this file (in `.beads/BD_GUIDE.md`), regenerate it after upgrades to get the latest bd documentation. The file is version-stamped and should never be manually edited. - -**Related:** See GitHub Discussion #239 for background on agent upgrade workflows. - ## Human Setup vs Agent Usage **IMPORTANT:** If you need to initialize bd, use the `--quiet` flag: diff --git a/cmd/bd/version_tracking.go b/cmd/bd/version_tracking.go index 2ef3c91e..10eb5cf3 100644 --- a/cmd/bd/version_tracking.go +++ b/cmd/bd/version_tracking.go @@ -149,67 +149,9 @@ func maybeShowUpgradeNotification() { fmt.Println("šŸ’” Run 'bd upgrade review' to see what changed") fmt.Println("šŸ’Š Run 'bd doctor' to verify upgrade completed cleanly") - // Check if BD_GUIDE.md exists and needs updating - checkAndSuggestBDGuideUpdate() - fmt.Println() } -// checkAndSuggestBDGuideUpdate checks if .beads/BD_GUIDE.md exists and suggests regeneration if outdated. -// bd-woro: Auto-update BD_GUIDE.md on version changes -func checkAndSuggestBDGuideUpdate() { - beadsDir := beads.FindBeadsDir() - if beadsDir == "" { - return - } - - guidePath := beadsDir + "/BD_GUIDE.md" - - // Check if BD_GUIDE.md exists - if _, err := os.Stat(guidePath); os.IsNotExist(err) { - // File doesn't exist - no suggestion needed - return - } - - // Read first few lines to check version stamp - // #nosec G304 - guidePath is constructed from beadsDir + constant string - content, err := os.ReadFile(guidePath) - if err != nil { - return // Silent failure - } - - // Look for version in the first 200 bytes (should be in the header) - header := string(content) - if len(header) > 200 { - header = header[:200] - } - - // Check if the file has the old version stamp - oldVersionStamp := fmt.Sprintf("bd v%s", previousVersion) - currentVersionStamp := fmt.Sprintf("bd v%s", Version) - - if containsSubstring(header, oldVersionStamp) && !containsSubstring(header, currentVersionStamp) { - // BD_GUIDE.md is outdated - fmt.Printf("šŸ“„ BD_GUIDE.md is outdated (v%s ā†’ v%s)\n", previousVersion, Version) - fmt.Printf("šŸ’” Run 'bd onboard --output .beads/BD_GUIDE.md' to regenerate\n") - } -} - -// containsSubstring checks if haystack contains needle (case-sensitive) -func containsSubstring(haystack, needle string) bool { - return len(haystack) >= len(needle) && findSubstring(haystack, needle) >= 0 -} - -// findSubstring returns the index of needle in haystack, or -1 if not found -func findSubstring(haystack, needle string) int { - for i := 0; i <= len(haystack)-len(needle); i++ { - if haystack[i:i+len(needle)] == needle { - return i - } - } - return -1 -} - // findActualJSONLFile scans .beads/ for the actual JSONL file in use. // Prefers issues.jsonl over beads.jsonl (canonical name), skips backups and merge artifacts. // Returns empty string if no JSONL file is found. diff --git a/docs/UNINSTALLING.md b/docs/UNINSTALLING.md index 191d46df..fd7e4c2d 100644 --- a/docs/UNINSTALLING.md +++ b/docs/UNINSTALLING.md @@ -111,7 +111,6 @@ The `.beads/` directory contains: | `config.yaml` | Project configuration | | `metadata.json` | Version tracking | | `deletions.jsonl` | Soft-deleted issues | -| `BD_GUIDE.md` | AI agent instructions | | `README.md` | Human-readable overview | Remove everything: From e58d60b8026662e51998d3df39e88c5bd9a2e813 Mon Sep 17 00:00:00 2001 From: Aarya Reddy <144569759+kraitsura@users.noreply.github.com> Date: Sat, 20 Dec 2025 21:33:38 -0800 Subject: [PATCH 10/18] feat(mcp): add output control parameters for token efficiency (#667) Add granular control over MCP tool response sizes to minimize context window usage while maintaining full functionality when needed. ## Output Control Parameters ### Read Operations (ready, list, show, blocked) - `brief`: Return BriefIssue {id, title, status, priority} (~97% smaller) - `fields`: Custom field projection with validation - invalid fields raise ValueError - `max_description_length`: Truncate descriptions to N chars with "..." - `brief_deps`: Full issue but dependencies as BriefDep (~48% smaller) ### Write Operations (create, update, close, reopen) - `brief`: Return OperationResult {id, action, message} (~97% smaller) - Default is brief=True for minimal confirmations ## Token Savings | Operation | Before | After (brief) | Reduction | |-----------|--------|---------------|-----------| | ready(limit=10) | ~20KB | ~600B | 97% | | list(limit=20) | ~40KB | ~800B | 98% | | show() | ~2KB | ~60B | 97% | | show() with 5 deps | ~4.5KB | ~2.3KB | 48% | | blocked() | ~10KB | ~240B | 98% | | create() response | ~2KB | ~50B | 97% | ## New Models - BriefIssue: Ultra-minimal issue (4 fields, ~60B) - BriefDep: Compact dependency (5 fields, ~70B) - OperationResult: Write confirmation (3 fields, ~50B) - OperationAction: Literal["created", "updated", "closed", "reopened"] ## Best Practices - Unified `brief` parameter naming across all operations - `brief=True` always means "give me less data" - Field validation with clear error messages listing valid fields - All parameters optional with backwards-compatible defaults - Progressive disclosure: scan cheap, detail on demand --- ## Filtering Parameters (aligns MCP with CLI) Add missing filter parameters to `list` and `ready` tools that were documented in MCP instructions but not implemented. ### ReadyWorkParams - New Fields - `labels: list[str]` - AND filter: must have ALL specified labels - `labels_any: list[str]` - OR filter: must have at least one - `unassigned: bool` - Filter to only unassigned issues - `sort_policy: str` - Sort by: hybrid (default), priority, oldest ### ListIssuesParams - New Fields - `labels: list[str]` - AND filter: must have ALL specified labels - `labels_any: list[str]` - OR filter: must have at least one - `query: str` - Search in title (case-insensitive substring) - `unassigned: bool` - Filter to only unassigned issues ### CLI Flag Mappings | MCP Parameter | ready CLI Flag | list CLI Flag | |---------------|----------------|---------------| | labels | --label (repeated) | --label (repeated) | | labels_any | --label-any (repeated) | --label-any (repeated) | | query | N/A | --title | | unassigned | --unassigned | --no-assignee | | sort_policy | --sort | N/A | --- ## Documentation & Testing ### get_tool_info() Updates - Added `brief`, `brief_deps`, `fields`, `max_description_length` to show tool - Added `brief` parameter docs for create, update, close, reopen - Added `brief`, `brief_deps` parameter docs for blocked ### Test Coverage (16 new tests) - `test_create_brief_default` / `test_create_brief_false` - `test_update_brief_default` / `test_update_brief_false` - `test_close_brief_default` / `test_close_brief_false` - `test_reopen_brief_default` - `test_show_brief` / `test_show_fields_projection` / `test_show_fields_invalid` - `test_show_max_description_length` / `test_show_brief_deps` - `test_list_brief` / `test_ready_brief` / `test_blocked_brief` --- ## Backward Compatibility All new parameters are optional with sensible defaults: - `brief`: False for reads, True for writes - `fields`, `max_description_length`: None (no filtering/truncation) - `labels`, `labels_any`, `query`: None (no filtering) - `unassigned`: False (include all) - `sort_policy`: None (use default hybrid sort) Existing MCP tool calls continue to work unchanged. --- .../beads-mcp/src/beads_mcp/bd_client.py | 20 + .../src/beads_mcp/bd_daemon_client.py | 16 + .../beads-mcp/src/beads_mcp/models.py | 47 +- .../beads-mcp/src/beads_mcp/server.py | 382 ++++++++++++-- integrations/beads-mcp/src/beads_mcp/tools.py | 24 +- .../tests/test_mcp_server_integration.py | 479 ++++++++++++++++-- 6 files changed, 883 insertions(+), 85 deletions(-) diff --git a/integrations/beads-mcp/src/beads_mcp/bd_client.py b/integrations/beads-mcp/src/beads_mcp/bd_client.py index a20759b0..056fa8aa 100644 --- a/integrations/beads-mcp/src/beads_mcp/bd_client.py +++ b/integrations/beads-mcp/src/beads_mcp/bd_client.py @@ -385,6 +385,16 @@ class BdCliClient(BdClientBase): args.extend(["--priority", str(params.priority)]) if params.assignee: args.extend(["--assignee", params.assignee]) + if params.labels: + for label in params.labels: + args.extend(["--label", label]) + if params.labels_any: + for label in params.labels_any: + args.extend(["--label-any", label]) + if params.unassigned: + args.append("--unassigned") + if params.sort_policy: + args.extend(["--sort", params.sort_policy]) data = await self._run_command(*args) if not isinstance(data, list): @@ -412,6 +422,16 @@ class BdCliClient(BdClientBase): args.extend(["--type", params.issue_type]) if params.assignee: args.extend(["--assignee", params.assignee]) + if params.labels: + for label in params.labels: + args.extend(["--label", label]) + if params.labels_any: + for label in params.labels_any: + args.extend(["--label-any", label]) + if params.query: + args.extend(["--title", params.query]) + if params.unassigned: + args.append("--no-assignee") if params.limit: args.extend(["--limit", str(params.limit)]) diff --git a/integrations/beads-mcp/src/beads_mcp/bd_daemon_client.py b/integrations/beads-mcp/src/beads_mcp/bd_daemon_client.py index 5ec671d5..e960ffbb 100644 --- a/integrations/beads-mcp/src/beads_mcp/bd_daemon_client.py +++ b/integrations/beads-mcp/src/beads_mcp/bd_daemon_client.py @@ -377,6 +377,14 @@ class BdDaemonClient(BdClientBase): args["issue_type"] = params.issue_type if params.assignee: args["assignee"] = params.assignee + if params.labels: + args["labels"] = params.labels + if params.labels_any: + args["labels_any"] = params.labels_any + if params.query: + args["query"] = params.query + if params.unassigned: + args["unassigned"] = params.unassigned if params.limit: args["limit"] = params.limit @@ -414,6 +422,14 @@ class BdDaemonClient(BdClientBase): args["assignee"] = params.assignee if params.priority is not None: args["priority"] = params.priority + if params.labels: + args["labels"] = params.labels + if params.labels_any: + args["labels_any"] = params.labels_any + if params.unassigned: + args["unassigned"] = params.unassigned + if params.sort_policy: + args["sort_policy"] = params.sort_policy if params.limit: args["limit"] = params.limit diff --git a/integrations/beads-mcp/src/beads_mcp/models.py b/integrations/beads-mcp/src/beads_mcp/models.py index 118c456b..1d095650 100644 --- a/integrations/beads-mcp/src/beads_mcp/models.py +++ b/integrations/beads-mcp/src/beads_mcp/models.py @@ -9,6 +9,7 @@ from pydantic import BaseModel, Field, field_validator IssueStatus = Literal["open", "in_progress", "blocked", "deferred", "closed"] IssueType = Literal["bug", "feature", "task", "epic", "chore"] DependencyType = Literal["blocks", "related", "parent-child", "discovered-from"] +OperationAction = Literal["created", "updated", "closed", "reopened"] # ============================================================================= @@ -43,7 +44,7 @@ class IssueMinimal(BaseModel): class CompactedResult(BaseModel): """Result container for compacted list responses. - + When results exceed threshold, returns preview + metadata instead of full data. This prevents context window overflow for large issue lists. """ @@ -54,6 +55,42 @@ class CompactedResult(BaseModel): hint: str = "Use show(issue_id) for full issue details" +class BriefIssue(BaseModel): + """Ultra-minimal issue for scanning (4 fields). + + Use for quick scans where only identification + priority needed. + ~95% smaller than full Issue. + """ + id: str + title: str + status: IssueStatus + priority: int = Field(ge=0, le=4) + + +class BriefDep(BaseModel): + """Brief dependency for overview (5 fields). + + Use with brief_deps=True to get full issue but compact dependencies. + ~90% smaller than full LinkedIssue. + """ + id: str + title: str + status: IssueStatus + priority: int = Field(ge=0, le=4) + dependency_type: DependencyType | None = None + + +class OperationResult(BaseModel): + """Minimal confirmation for write operations. + + Default response for create/update/close/reopen when verbose=False. + ~97% smaller than returning full Issue object. + """ + id: str + action: OperationAction + message: str | None = None + + # ============================================================================= # ORIGINAL MODELS (unchanged for backward compatibility) # ============================================================================= @@ -168,6 +205,10 @@ class ReadyWorkParams(BaseModel): limit: int = Field(default=10, ge=1, le=100) priority: int | None = Field(default=None, ge=0, le=4) assignee: str | None = None + labels: list[str] | None = None # AND: must have ALL labels + labels_any: list[str] | None = None # OR: must have at least one + unassigned: bool = False # Filter to only unassigned issues + sort_policy: str | None = None # hybrid, priority, oldest class ListIssuesParams(BaseModel): @@ -177,6 +218,10 @@ class ListIssuesParams(BaseModel): priority: int | None = Field(default=None, ge=0, le=4) issue_type: IssueType | None = None assignee: str | None = None + labels: list[str] | None = None # AND: must have ALL labels + labels_any: list[str] | None = None # OR: must have at least one + query: str | None = None # Search in title (case-insensitive) + unassigned: bool = False # Filter to only unassigned issues limit: int = Field(default=20, ge=1, le=100) # Reduced to avoid MCP buffer overflow diff --git a/integrations/beads-mcp/src/beads_mcp/server.py b/integrations/beads-mcp/src/beads_mcp/server.py index 1ed3d00e..f522c3b9 100644 --- a/integrations/beads-mcp/src/beads_mcp/server.py +++ b/integrations/beads-mcp/src/beads_mcp/server.py @@ -25,13 +25,17 @@ from typing import Any, Awaitable, Callable, TypeVar from fastmcp import FastMCP from beads_mcp.models import ( - BlockedIssue, + BlockedIssue, + BriefDep, + BriefIssue, CompactedResult, - DependencyType, + DependencyType, Issue, IssueMinimal, - IssueStatus, - IssueType, + IssueStatus, + IssueType, + LinkedIssue, + OperationResult, Stats, ) from beads_mcp.tools import ( @@ -363,10 +367,17 @@ async def get_tool_info(tool_name: str) -> dict[str, Any]: "limit": "int (1-100, default 10) - Max issues to return", "priority": "int (0-4, optional) - Filter by priority", "assignee": "str (optional) - Filter by assignee", + "labels": "list[str] (optional) - AND filter: must have ALL labels", + "labels_any": "list[str] (optional) - OR filter: must have at least one", + "unassigned": "bool (default false) - Only unassigned issues", + "sort_policy": "str (optional) - hybrid|priority|oldest", + "brief": "bool (default false) - Return only {id, title, status, priority}", + "fields": "list[str] (optional) - Custom field projection", + "max_description_length": "int (optional) - Truncate descriptions", "workspace_root": "str (optional) - Workspace path" }, "returns": "List of ready issues (minimal format for context efficiency)", - "example": "ready(limit=5, priority=1)" + "example": "ready(limit=5, priority=1, unassigned=True)" }, "list": { "name": "list", @@ -376,21 +387,32 @@ async def get_tool_info(tool_name: str) -> dict[str, Any]: "priority": "int 0-4 (optional)", "issue_type": "bug|feature|task|epic|chore (optional)", "assignee": "str (optional)", + "labels": "list[str] (optional) - AND filter: must have ALL labels", + "labels_any": "list[str] (optional) - OR filter: must have at least one", + "query": "str (optional) - Search in title (case-insensitive)", + "unassigned": "bool (default false) - Only unassigned issues", "limit": "int (1-100, default 20)", + "brief": "bool (default false) - Return only {id, title, status, priority}", + "fields": "list[str] (optional) - Custom field projection", + "max_description_length": "int (optional) - Truncate descriptions", "workspace_root": "str (optional)" }, "returns": "List of issues (compacted if >20 results)", - "example": "list(status='open', priority=1, limit=10)" + "example": "list(status='open', labels=['bug'], query='auth')" }, "show": { "name": "show", "description": "Show full details for a specific issue including dependencies", "parameters": { "issue_id": "str (required) - e.g., 'bd-a1b2'", + "brief": "bool (default false) - Return only {id, title, status, priority}", + "brief_deps": "bool (default false) - Full issue with compact dependencies", + "fields": "list[str] (optional) - Custom field projection", + "max_description_length": "int (optional) - Truncate description", "workspace_root": "str (optional)" }, - "returns": "Full Issue object with dependencies and dependents", - "example": "show(issue_id='bd-a1b2')" + "returns": "Full Issue object (or BriefIssue/dict based on params)", + "example": "show(issue_id='bd-a1b2', brief_deps=True)" }, "create": { "name": "create", @@ -403,9 +425,10 @@ async def get_tool_info(tool_name: str) -> dict[str, Any]: "assignee": "str (optional)", "labels": "list[str] (optional)", "deps": "list[str] (optional) - dependency IDs", + "brief": "bool (default true) - Return OperationResult instead of full Issue", "workspace_root": "str (optional)" }, - "returns": "Created Issue object", + "returns": "OperationResult {id, action} or full Issue if brief=False", "example": "create(title='Fix auth bug', priority=1, issue_type='bug')" }, "update": { @@ -418,9 +441,10 @@ async def get_tool_info(tool_name: str) -> dict[str, Any]: "assignee": "str (optional)", "title": "str (optional)", "description": "str (optional)", + "brief": "bool (default true) - Return OperationResult instead of full Issue", "workspace_root": "str (optional)" }, - "returns": "Updated Issue object", + "returns": "OperationResult {id, action} or full Issue if brief=False", "example": "update(issue_id='bd-a1b2', status='in_progress')" }, "close": { @@ -429,9 +453,10 @@ async def get_tool_info(tool_name: str) -> dict[str, Any]: "parameters": { "issue_id": "str (required)", "reason": "str (default 'Completed')", + "brief": "bool (default true) - Return OperationResult instead of full Issue", "workspace_root": "str (optional)" }, - "returns": "List of closed issues", + "returns": "List of OperationResult or full Issues if brief=False", "example": "close(issue_id='bd-a1b2', reason='Fixed in PR #123')" }, "reopen": { @@ -440,9 +465,10 @@ async def get_tool_info(tool_name: str) -> dict[str, Any]: "parameters": { "issue_ids": "list[str] (required)", "reason": "str (optional)", + "brief": "bool (default true) - Return OperationResult instead of full Issue", "workspace_root": "str (optional)" }, - "returns": "List of reopened issues", + "returns": "List of OperationResult or full Issues if brief=False", "example": "reopen(issue_ids=['bd-a1b2'], reason='Need more work')" }, "dep": { @@ -467,9 +493,13 @@ async def get_tool_info(tool_name: str) -> dict[str, Any]: "blocked": { "name": "blocked", "description": "Show blocked issues and what blocks them", - "parameters": {"workspace_root": "str (optional)"}, - "returns": "List of blocked issues with blocker info", - "example": "blocked()" + "parameters": { + "brief": "bool (default false) - Return only {id, title, status, priority}", + "brief_deps": "bool (default false) - Full issues with compact dependencies", + "workspace_root": "str (optional)" + }, + "returns": "List of BlockedIssue (or BriefIssue/dict based on params)", + "example": "blocked(brief=True)" }, "admin": { "name": "admin", @@ -669,26 +699,131 @@ def _to_minimal(issue: Issue) -> IssueMinimal: ) +def _to_brief(issue: Issue) -> BriefIssue: + """Convert full Issue to brief format (id, title, status, priority).""" + return BriefIssue( + id=issue.id, + title=issue.title, + status=issue.status, + priority=issue.priority, + ) + + +def _to_brief_dep(linked: LinkedIssue) -> BriefDep: + """Convert LinkedIssue to brief dependency format.""" + return BriefDep( + id=linked.id, + title=linked.title, + status=linked.status, + priority=linked.priority, + dependency_type=linked.dependency_type, + ) + + +# Valid fields for Issue model (used for field validation) +VALID_ISSUE_FIELDS: set[str] = { + "id", "title", "description", "design", "acceptance_criteria", "notes", + "external_ref", "status", "priority", "issue_type", "created_at", + "updated_at", "closed_at", "assignee", "labels", "dependency_count", + "dependent_count", "dependencies", "dependents", +} + + +def _filter_fields(obj: Issue, fields: list[str]) -> dict[str, Any]: + """Extract only specified fields from an Issue object. + + Raises: + ValueError: If any requested field is not a valid Issue field. + """ + # Validate fields first + requested = set(fields) + invalid = requested - VALID_ISSUE_FIELDS + if invalid: + raise ValueError( + f"Invalid field(s): {sorted(invalid)}. " + f"Valid fields: {sorted(VALID_ISSUE_FIELDS)}" + ) + + result: dict[str, Any] = {} + for field in fields: + value = getattr(obj, field) + # Handle nested Pydantic models + if hasattr(value, 'model_dump'): + result[field] = value.model_dump() + elif isinstance(value, list) and value and hasattr(value[0], 'model_dump'): + result[field] = [item.model_dump() for item in value] + else: + result[field] = value + return result + + +def _truncate_description(issue: Issue, max_length: int) -> Issue: + """Return issue copy with truncated description if needed.""" + if issue.description and len(issue.description) > max_length: + data = issue.model_dump() + data['description'] = issue.description[:max_length] + "..." + return Issue(**data) + return issue + + @mcp.tool(name="ready", description="Find tasks that have no blockers and are ready to be worked on. Returns minimal format for context efficiency.") @with_workspace async def ready_work( limit: int = 10, priority: int | None = None, assignee: str | None = None, + labels: list[str] | None = None, + labels_any: list[str] | None = None, + unassigned: bool = False, + sort_policy: str | None = None, workspace_root: str | None = None, -) -> list[IssueMinimal] | CompactedResult: + brief: bool = False, + fields: list[str] | None = None, + max_description_length: int | None = None, +) -> list[IssueMinimal] | list[BriefIssue] | list[dict[str, Any]] | CompactedResult: """Find issues with no blocking dependencies that are ready to work on. - + + Args: + limit: Maximum issues to return (1-100, default 10) + priority: Filter by priority level (0-4) + assignee: Filter by assignee + labels: Filter by labels (AND: must have ALL specified labels) + labels_any: Filter by labels (OR: must have at least one) + unassigned: Filter to only unassigned issues + sort_policy: Sort policy: hybrid (default), priority, oldest + workspace_root: Workspace path override + brief: If True, return only {id, title, status} (~97% smaller) + fields: Return only specified fields (custom projections) + max_description_length: Truncate descriptions to this length + Returns minimal issue format to reduce context usage by ~80%. Use show(issue_id) for full details including dependencies. - - If results exceed threshold, returns compacted preview. """ - issues = await beads_ready_work(limit=limit, priority=priority, assignee=assignee) - - # Convert to minimal format + issues = await beads_ready_work( + limit=limit, + priority=priority, + assignee=assignee, + labels=labels, + labels_any=labels_any, + unassigned=unassigned, + sort_policy=sort_policy, + ) + + # Apply description truncation first + if max_description_length: + issues = [_truncate_description(i, max_description_length) for i in issues] + + # Return brief format if requested + if brief: + return [_to_brief(issue) for issue in issues] + + # Return specific fields if requested + if fields: + return [_filter_fields(issue, fields) for issue in issues] + + # Default: minimal format with compaction minimal_issues = [_to_minimal(issue) for issue in issues] - + # Apply compaction if over threshold if len(minimal_issues) > COMPACTION_THRESHOLD: return CompactedResult( @@ -704,7 +839,7 @@ async def ready_work( @mcp.tool( name="list", - description="List all issues with optional filters (status, priority, type, assignee). Returns minimal format for context efficiency.", + description="List all issues with optional filters. When status='blocked', returns BlockedIssue with blocked_by info.", ) @with_workspace async def list_issues( @@ -712,27 +847,63 @@ async def list_issues( priority: int | None = None, issue_type: IssueType | None = None, assignee: str | None = None, + labels: list[str] | None = None, + labels_any: list[str] | None = None, + query: str | None = None, + unassigned: bool = False, limit: int = 20, workspace_root: str | None = None, -) -> list[IssueMinimal] | CompactedResult: + brief: bool = False, + fields: list[str] | None = None, + max_description_length: int | None = None, +) -> list[IssueMinimal] | list[BriefIssue] | list[dict[str, Any]] | CompactedResult: """List all issues with optional filters. - + + Args: + status: Filter by status (open, in_progress, blocked, closed) + priority: Filter by priority level (0-4) + issue_type: Filter by type (bug, feature, task, epic, chore) + assignee: Filter by assignee + labels: Filter by labels (AND: must have ALL specified labels) + labels_any: Filter by labels (OR: must have at least one) + query: Search in title (case-insensitive substring) + unassigned: Filter to only unassigned issues + limit: Maximum issues to return (1-100, default 20) + workspace_root: Workspace path override + brief: If True, return only {id, title, status} (~97% smaller) + fields: Return only specified fields (custom projections) + max_description_length: Truncate descriptions to this length + Returns minimal issue format to reduce context usage by ~80%. Use show(issue_id) for full details including dependencies. - - If results exceed threshold, returns compacted preview. """ issues = await beads_list_issues( status=status, priority=priority, issue_type=issue_type, assignee=assignee, + labels=labels, + labels_any=labels_any, + query=query, + unassigned=unassigned, limit=limit, ) - # Convert to minimal format + # Apply description truncation first + if max_description_length: + issues = [_truncate_description(i, max_description_length) for i in issues] + + # Return brief format if requested + if brief: + return [_to_brief(issue) for issue in issues] + + # Return specific fields if requested + if fields: + return [_filter_fields(issue, fields) for issue in issues] + + # Default: minimal format with compaction minimal_issues = [_to_minimal(issue) for issue in issues] - + # Apply compaction if over threshold if len(minimal_issues) > COMPACTION_THRESHOLD: return CompactedResult( @@ -751,9 +922,44 @@ async def list_issues( description="Show detailed information about a specific issue including dependencies and dependents.", ) @with_workspace -async def show_issue(issue_id: str, workspace_root: str | None = None) -> Issue: - """Show detailed information about a specific issue.""" - return await beads_show_issue(issue_id=issue_id) +async def show_issue( + issue_id: str, + workspace_root: str | None = None, + brief: bool = False, + brief_deps: bool = False, + fields: list[str] | None = None, + max_description_length: int | None = None, +) -> Issue | BriefIssue | dict[str, Any]: + """Show detailed information about a specific issue. + + Args: + issue_id: The issue ID to show (e.g., 'bd-a1b2') + workspace_root: Workspace path override + brief: If True, return only {id, title, status, priority} + brief_deps: If True, return full issue but with compact dependencies + fields: Return only specified fields (custom projections) + max_description_length: Truncate description to this length + """ + issue = await beads_show_issue(issue_id=issue_id) + + if max_description_length: + issue = _truncate_description(issue, max_description_length) + + # Brief mode - just identification + if brief: + return _to_brief(issue) + + # Brief deps mode - full issue but compact dependencies + if brief_deps: + data = issue.model_dump() + data["dependencies"] = [_to_brief_dep(d).model_dump() for d in issue.dependencies] + data["dependents"] = [_to_brief_dep(d).model_dump() for d in issue.dependents] + return data + + if fields: + return _filter_fields(issue, fields) + + return issue @mcp.tool( @@ -776,9 +982,14 @@ async def create_issue( id: str | None = None, deps: list[str] | None = None, workspace_root: str | None = None, -) -> Issue: - """Create a new issue.""" - return await beads_create_issue( + brief: bool = True, +) -> Issue | OperationResult: + """Create a new issue. + + Args: + brief: If True (default), return minimal OperationResult; if False, return full Issue + """ + issue = await beads_create_issue( title=title, description=description, design=design, @@ -792,6 +1003,10 @@ async def create_issue( deps=deps, ) + if brief: + return OperationResult(id=issue.id, action="created") + return issue + @mcp.tool( name="update", @@ -812,14 +1027,23 @@ async def update_issue( notes: str | None = None, external_ref: str | None = None, workspace_root: str | None = None, -) -> Issue | list[Issue] | None: - """Update an existing issue.""" + brief: bool = True, +) -> Issue | OperationResult | list[Issue] | list[OperationResult] | None: + """Update an existing issue. + + Args: + brief: If True (default), return minimal OperationResult; if False, return full Issue + """ # If trying to close via update, redirect to close_issue to preserve approval workflow if status == "closed": issues = await beads_close_issue(issue_id=issue_id, reason="Closed via update") - return issues[0] if issues else None - - return await beads_update_issue( + if not issues: + return None + if brief: + return OperationResult(id=issues[0].id, action="closed", message="Closed via update") + return issues[0] + + issue = await beads_update_issue( issue_id=issue_id, status=status, priority=priority, @@ -832,6 +1056,12 @@ async def update_issue( external_ref=external_ref, ) + if issue is None: + return None + if brief: + return OperationResult(id=issue.id, action="updated") + return issue + @mcp.tool( name="close", @@ -839,9 +1069,23 @@ async def update_issue( ) @with_workspace @require_context -async def close_issue(issue_id: str, reason: str = "Completed", workspace_root: str | None = None) -> list[Issue]: - """Close (complete) an issue.""" - return await beads_close_issue(issue_id=issue_id, reason=reason) +async def close_issue( + issue_id: str, + reason: str = "Completed", + workspace_root: str | None = None, + brief: bool = True, +) -> list[Issue] | list[OperationResult]: + """Close (complete) an issue. + + Args: + brief: If True (default), return minimal OperationResult list; if False, return full Issues + """ + issues = await beads_close_issue(issue_id=issue_id, reason=reason) + + if not brief: + return issues + + return [OperationResult(id=issue_id, action="closed", message=reason)] @mcp.tool( @@ -850,9 +1094,22 @@ async def close_issue(issue_id: str, reason: str = "Completed", workspace_root: ) @with_workspace @require_context -async def reopen_issue(issue_ids: list[str], reason: str | None = None, workspace_root: str | None = None) -> list[Issue]: - """Reopen one or more closed issues.""" - return await beads_reopen_issue(issue_ids=issue_ids, reason=reason) +async def reopen_issue( + issue_ids: list[str], + reason: str | None = None, + workspace_root: str | None = None, + brief: bool = True, +) -> list[Issue] | list[OperationResult]: + """Reopen one or more closed issues. + + Args: + brief: If True (default), return minimal OperationResult list; if False, return full Issues + """ + issues = await beads_reopen_issue(issue_ids=issue_ids, reason=reason) + + if brief: + return [OperationResult(id=i.id, action="reopened", message=reason) for i in issues] + return issues @mcp.tool( @@ -891,9 +1148,34 @@ async def stats(workspace_root: str | None = None) -> Stats: description="Get blocked issues showing what dependencies are blocking them from being worked on.", ) @with_workspace -async def blocked(workspace_root: str | None = None) -> list[BlockedIssue]: - """Get blocked issues.""" - return await beads_blocked() +async def blocked( + workspace_root: str | None = None, + brief: bool = False, + brief_deps: bool = False, +) -> list[BlockedIssue] | list[BriefIssue] | list[dict[str, Any]]: + """Get blocked issues. + + Args: + brief: If True, return only {id, title, status, priority} per issue + brief_deps: If True, return full issues but with compact dependencies + """ + issues = await beads_blocked() + + # Brief mode - just identification (most compact) + if brief: + return [_to_brief(issue) for issue in issues] + + # Brief deps mode - full issue but compact dependencies + if brief_deps: + result = [] + for issue in issues: + data = issue.model_dump() + data["dependencies"] = [_to_brief_dep(d).model_dump() for d in issue.dependencies] + data["dependents"] = [_to_brief_dep(d).model_dump() for d in issue.dependents] + result.append(data) + return result + + return issues @mcp.tool( diff --git a/integrations/beads-mcp/src/beads_mcp/tools.py b/integrations/beads-mcp/src/beads_mcp/tools.py index d340eea5..e47a70cb 100644 --- a/integrations/beads-mcp/src/beads_mcp/tools.py +++ b/integrations/beads-mcp/src/beads_mcp/tools.py @@ -305,6 +305,10 @@ async def beads_ready_work( limit: Annotated[int, "Maximum number of issues to return (1-100)"] = 10, priority: Annotated[int | None, "Filter by priority (0-4, 0=highest)"] = None, assignee: Annotated[str | None, "Filter by assignee"] = None, + labels: Annotated[list[str] | None, "Filter by labels (AND: must have ALL)"] = None, + labels_any: Annotated[list[str] | None, "Filter by labels (OR: must have at least one)"] = None, + unassigned: Annotated[bool, "Filter to only unassigned issues"] = False, + sort_policy: Annotated[str | None, "Sort policy: hybrid (default), priority, oldest"] = None, ) -> list[Issue]: """Find issues with no blocking dependencies that are ready to work on. @@ -312,7 +316,15 @@ async def beads_ready_work( Perfect for agents to claim next work! """ client = await _get_client() - params = ReadyWorkParams(limit=limit, priority=priority, assignee=assignee) + params = ReadyWorkParams( + limit=limit, + priority=priority, + assignee=assignee, + labels=labels, + labels_any=labels_any, + unassigned=unassigned, + sort_policy=sort_policy, + ) return await client.ready(params) @@ -321,7 +333,11 @@ async def beads_list_issues( priority: Annotated[int | None, "Filter by priority (0-4, 0=highest)"] = None, issue_type: Annotated[IssueType | None, "Filter by type (bug, feature, task, epic, chore)"] = None, assignee: Annotated[str | None, "Filter by assignee"] = None, - limit: Annotated[int, "Maximum number of issues to return (1-1000)"] = 50, + labels: Annotated[list[str] | None, "Filter by labels (AND: must have ALL)"] = None, + labels_any: Annotated[list[str] | None, "Filter by labels (OR: must have at least one)"] = None, + query: Annotated[str | None, "Search in title (case-insensitive substring)"] = None, + unassigned: Annotated[bool, "Filter to only unassigned issues"] = False, + limit: Annotated[int, "Maximum number of issues to return (1-100)"] = 20, ) -> list[Issue]: """List all issues with optional filters.""" client = await _get_client() @@ -331,6 +347,10 @@ async def beads_list_issues( priority=priority, issue_type=issue_type, assignee=assignee, + labels=labels, + labels_any=labels_any, + query=query, + unassigned=unassigned, limit=limit, ) return await client.list_issues(params) diff --git a/integrations/beads-mcp/tests/test_mcp_server_integration.py b/integrations/beads-mcp/tests/test_mcp_server_integration.py index e0a6ba72..a06b5a2d 100644 --- a/integrations/beads-mcp/tests/test_mcp_server_integration.py +++ b/integrations/beads-mcp/tests/test_mcp_server_integration.py @@ -118,6 +118,7 @@ async def test_create_issue_tool(mcp_client): "description": "Created via MCP server", "priority": 1, "issue_type": "bug", + "brief": False, # Get full Issue object }, ) @@ -141,7 +142,7 @@ async def test_show_issue_tool(mcp_client): # First create an issue create_result = await mcp_client.call_tool( "create", - {"title": "Issue to show", "priority": 2, "issue_type": "task"}, + {"title": "Issue to show", "priority": 2, "issue_type": "task", "brief": False}, ) import json @@ -161,10 +162,10 @@ async def test_list_issues_tool(mcp_client): """Test list_issues tool.""" # Create some issues first await mcp_client.call_tool( - "create", {"title": "Issue 1", "priority": 0, "issue_type": "bug"} + "create", {"title": "Issue 1", "priority": 0, "issue_type": "bug", "brief": False} ) await mcp_client.call_tool( - "create", {"title": "Issue 2", "priority": 1, "issue_type": "feature"} + "create", {"title": "Issue 2", "priority": 1, "issue_type": "feature", "brief": False} ) # List all issues @@ -188,7 +189,7 @@ async def test_update_issue_tool(mcp_client): # Create issue create_result = await mcp_client.call_tool( - "create", {"title": "Issue to update", "priority": 2, "issue_type": "task"} + "create", {"title": "Issue to update", "priority": 2, "issue_type": "task", "brief": False} ) created = json.loads(create_result.content[0].text) issue_id = created["id"] @@ -201,6 +202,7 @@ async def test_update_issue_tool(mcp_client): "status": "in_progress", "priority": 0, "title": "Updated title", + "brief": False, # Get full Issue object }, ) @@ -218,14 +220,14 @@ async def test_close_issue_tool(mcp_client): # Create issue create_result = await mcp_client.call_tool( - "create", {"title": "Issue to close", "priority": 1, "issue_type": "bug"} + "create", {"title": "Issue to close", "priority": 1, "issue_type": "bug", "brief": False} ) created = json.loads(create_result.content[0].text) issue_id = created["id"] - # Close issue + # Close issue with brief=False to get full Issue object close_result = await mcp_client.call_tool( - "close", {"issue_id": issue_id, "reason": "Test complete"} + "close", {"issue_id": issue_id, "reason": "Test complete", "brief": False} ) closed_issues = json.loads(close_result.content[0].text) @@ -243,7 +245,7 @@ async def test_reopen_issue_tool(mcp_client): # Create and close issue create_result = await mcp_client.call_tool( - "create", {"title": "Issue to reopen", "priority": 1, "issue_type": "bug"} + "create", {"title": "Issue to reopen", "priority": 1, "issue_type": "bug", "brief": False} ) created = json.loads(create_result.content[0].text) issue_id = created["id"] @@ -252,9 +254,9 @@ async def test_reopen_issue_tool(mcp_client): "close", {"issue_id": issue_id, "reason": "Done"} ) - # Reopen issue + # Reopen issue with brief=False to get full Issue object reopen_result = await mcp_client.call_tool( - "reopen", {"issue_ids": [issue_id]} + "reopen", {"issue_ids": [issue_id], "brief": False} ) reopened_issues = json.loads(reopen_result.content[0].text) @@ -272,21 +274,21 @@ async def test_reopen_multiple_issues_tool(mcp_client): # Create and close two issues issue1_result = await mcp_client.call_tool( - "create", {"title": "Issue 1 to reopen", "priority": 1, "issue_type": "task"} + "create", {"title": "Issue 1 to reopen", "priority": 1, "issue_type": "task", "brief": False} ) issue1 = json.loads(issue1_result.content[0].text) issue2_result = await mcp_client.call_tool( - "create", {"title": "Issue 2 to reopen", "priority": 1, "issue_type": "task"} + "create", {"title": "Issue 2 to reopen", "priority": 1, "issue_type": "task", "brief": False} ) issue2 = json.loads(issue2_result.content[0].text) await mcp_client.call_tool("close", {"issue_id": issue1["id"], "reason": "Done"}) await mcp_client.call_tool("close", {"issue_id": issue2["id"], "reason": "Done"}) - # Reopen both issues + # Reopen both issues with brief=False reopen_result = await mcp_client.call_tool( - "reopen", {"issue_ids": [issue1["id"], issue2["id"]]} + "reopen", {"issue_ids": [issue1["id"], issue2["id"]], "brief": False} ) reopened_issues = json.loads(reopen_result.content[0].text) @@ -305,17 +307,17 @@ async def test_reopen_with_reason_tool(mcp_client): # Create and close issue create_result = await mcp_client.call_tool( - "create", {"title": "Issue to reopen with reason", "priority": 1, "issue_type": "bug"} + "create", {"title": "Issue to reopen with reason", "priority": 1, "issue_type": "bug", "brief": False} ) created = json.loads(create_result.content[0].text) issue_id = created["id"] await mcp_client.call_tool("close", {"issue_id": issue_id, "reason": "Done"}) - # Reopen with reason + # Reopen with reason and brief=False reopen_result = await mcp_client.call_tool( "reopen", - {"issue_ids": [issue_id], "reason": "Found regression"} + {"issue_ids": [issue_id], "reason": "Found regression", "brief": False} ) reopened_issues = json.loads(reopen_result.content[0].text) @@ -333,18 +335,18 @@ async def test_ready_work_tool(mcp_client): # Create a ready issue (no dependencies) ready_result = await mcp_client.call_tool( - "create", {"title": "Ready work", "priority": 1, "issue_type": "task"} + "create", {"title": "Ready work", "priority": 1, "issue_type": "task", "brief": False} ) ready_issue = json.loads(ready_result.content[0].text) # Create blocked issue blocking_result = await mcp_client.call_tool( - "create", {"title": "Blocking issue", "priority": 1, "issue_type": "task"} + "create", {"title": "Blocking issue", "priority": 1, "issue_type": "task", "brief": False} ) blocking_issue = json.loads(blocking_result.content[0].text) blocked_result = await mcp_client.call_tool( - "create", {"title": "Blocked issue", "priority": 1, "issue_type": "task"} + "create", {"title": "Blocked issue", "priority": 1, "issue_type": "task", "brief": False} ) blocked_issue = json.loads(blocked_result.content[0].text) @@ -374,12 +376,12 @@ async def test_add_dependency_tool(mcp_client): # Create two issues issue1_result = await mcp_client.call_tool( - "create", {"title": "Issue 1", "priority": 1, "issue_type": "task"} + "create", {"title": "Issue 1", "priority": 1, "issue_type": "task", "brief": False} ) issue1 = json.loads(issue1_result.content[0].text) issue2_result = await mcp_client.call_tool( - "create", {"title": "Issue 2", "priority": 1, "issue_type": "task"} + "create", {"title": "Issue 2", "priority": 1, "issue_type": "task", "brief": False} ) issue2 = json.loads(issue2_result.content[0].text) @@ -409,6 +411,7 @@ async def test_create_with_all_fields(mcp_client): "issue_type": "feature", "assignee": "testuser", "labels": ["urgent", "backend"], + "brief": False, # Get full Issue object }, ) @@ -433,6 +436,7 @@ async def test_list_with_filters(mcp_client): "priority": 0, "issue_type": "bug", "assignee": "alice", + "brief": False, }, ) await mcp_client.call_tool( @@ -442,6 +446,7 @@ async def test_list_with_filters(mcp_client): "priority": 1, "issue_type": "feature", "assignee": "bob", + "brief": False, }, ) @@ -468,10 +473,10 @@ async def test_ready_work_with_priority_filter(mcp_client): # Create issues with different priorities await mcp_client.call_tool( - "create", {"title": "P0 issue", "priority": 0, "issue_type": "bug"} + "create", {"title": "P0 issue", "priority": 0, "issue_type": "bug", "brief": False} ) await mcp_client.call_tool( - "create", {"title": "P1 issue", "priority": 1, "issue_type": "task"} + "create", {"title": "P1 issue", "priority": 1, "issue_type": "task", "brief": False} ) # Get ready work with priority filter @@ -493,14 +498,15 @@ async def test_update_partial_fields(mcp_client): "description": "Original description", "priority": 2, "issue_type": "task", + "brief": False, }, ) created = json.loads(create_result.content[0].text) issue_id = created["id"] - # Update only status + # Update only status with brief=False to get full Issue update_result = await mcp_client.call_tool( - "update", {"issue_id": issue_id, "status": "in_progress"} + "update", {"issue_id": issue_id, "status": "in_progress", "brief": False} ) updated = json.loads(update_result.content[0].text) assert updated["status"] == "in_progress" @@ -515,12 +521,12 @@ async def test_dependency_types(mcp_client): # Create issues issue1_result = await mcp_client.call_tool( - "create", {"title": "Issue 1", "priority": 1, "issue_type": "task"} + "create", {"title": "Issue 1", "priority": 1, "issue_type": "task", "brief": False} ) issue1 = json.loads(issue1_result.content[0].text) issue2_result = await mcp_client.call_tool( - "create", {"title": "Issue 2", "priority": 1, "issue_type": "task"} + "create", {"title": "Issue 2", "priority": 1, "issue_type": "task", "brief": False} ) issue2 = json.loads(issue2_result.content[0].text) @@ -542,10 +548,10 @@ async def test_stats_tool(mcp_client): # Create some issues to get stats await mcp_client.call_tool( - "create", {"title": "Stats test 1", "priority": 1, "issue_type": "bug"} + "create", {"title": "Stats test 1", "priority": 1, "issue_type": "bug", "brief": False} ) await mcp_client.call_tool( - "create", {"title": "Stats test 2", "priority": 2, "issue_type": "task"} + "create", {"title": "Stats test 2", "priority": 2, "issue_type": "task", "brief": False} ) # Get stats @@ -564,12 +570,12 @@ async def test_blocked_tool(mcp_client): # Create two issues blocking_result = await mcp_client.call_tool( - "create", {"title": "Blocking issue", "priority": 1, "issue_type": "task"} + "create", {"title": "Blocking issue", "priority": 1, "issue_type": "task", "brief": False} ) blocking_issue = json.loads(blocking_result.content[0].text) blocked_result = await mcp_client.call_tool( - "create", {"title": "Blocked issue", "priority": 1, "issue_type": "task"} + "create", {"title": "Blocked issue", "priority": 1, "issue_type": "task", "brief": False} ) blocked_issue = json.loads(blocked_result.content[0].text) @@ -664,3 +670,412 @@ async def test_context_default_show(mcp_client, temp_db): # Verify output contains workspace info (same as show action) assert "Workspace root:" in output assert "Database:" in output + + +# ============================================================================= +# OUTPUT CONTROL PARAMETER TESTS +# ============================================================================= + + +@pytest.mark.asyncio +async def test_create_brief_default(mcp_client): + """Test create returns OperationResult by default (brief=True).""" + import json + + result = await mcp_client.call_tool( + "create", + {"title": "Brief test issue", "priority": 2, "issue_type": "task"}, + ) + + data = json.loads(result.content[0].text) + # Default brief=True returns OperationResult + assert "id" in data + assert data["action"] == "created" + # Should NOT have full Issue fields + assert "title" not in data + assert "description" not in data + + +@pytest.mark.asyncio +async def test_create_brief_false(mcp_client): + """Test create returns full Issue when brief=False.""" + import json + + result = await mcp_client.call_tool( + "create", + { + "title": "Full issue test", + "description": "Full description", + "priority": 1, + "issue_type": "bug", + "brief": False, + }, + ) + + data = json.loads(result.content[0].text) + # brief=False returns full Issue + assert data["title"] == "Full issue test" + assert data["description"] == "Full description" + assert data["priority"] == 1 + assert data["issue_type"] == "bug" + assert data["status"] == "open" + + +@pytest.mark.asyncio +async def test_update_brief_default(mcp_client): + """Test update returns OperationResult by default (brief=True).""" + import json + + # Create issue first + create_result = await mcp_client.call_tool( + "create", {"title": "Update brief test", "brief": False} + ) + created = json.loads(create_result.content[0].text) + issue_id = created["id"] + + # Update with default brief=True + update_result = await mcp_client.call_tool( + "update", {"issue_id": issue_id, "status": "in_progress"} + ) + + data = json.loads(update_result.content[0].text) + assert data["id"] == issue_id + assert data["action"] == "updated" + assert "title" not in data + + +@pytest.mark.asyncio +async def test_update_brief_false(mcp_client): + """Test update returns full Issue when brief=False.""" + import json + + # Create issue first + create_result = await mcp_client.call_tool( + "create", {"title": "Update full test", "brief": False} + ) + created = json.loads(create_result.content[0].text) + issue_id = created["id"] + + # Update with brief=False + update_result = await mcp_client.call_tool( + "update", {"issue_id": issue_id, "status": "in_progress", "brief": False} + ) + + data = json.loads(update_result.content[0].text) + assert data["id"] == issue_id + assert data["status"] == "in_progress" + assert data["title"] == "Update full test" + + +@pytest.mark.asyncio +async def test_close_brief_default(mcp_client): + """Test close returns OperationResult by default (brief=True).""" + import json + + # Create issue first + create_result = await mcp_client.call_tool( + "create", {"title": "Close brief test", "brief": False} + ) + created = json.loads(create_result.content[0].text) + issue_id = created["id"] + + # Close with default brief=True + close_result = await mcp_client.call_tool( + "close", {"issue_id": issue_id, "reason": "Done"} + ) + + data = json.loads(close_result.content[0].text) + assert isinstance(data, list) + assert len(data) == 1 + assert data[0]["id"] == issue_id + assert data[0]["action"] == "closed" + + +@pytest.mark.asyncio +async def test_close_brief_false(mcp_client): + """Test close returns full Issue when brief=False.""" + import json + + # Create issue first + create_result = await mcp_client.call_tool( + "create", {"title": "Close full test", "brief": False} + ) + created = json.loads(create_result.content[0].text) + issue_id = created["id"] + + # Close with brief=False + close_result = await mcp_client.call_tool( + "close", {"issue_id": issue_id, "reason": "Done", "brief": False} + ) + + data = json.loads(close_result.content[0].text) + assert isinstance(data, list) + assert len(data) >= 1 + assert data[0]["id"] == issue_id + assert data[0]["status"] == "closed" + assert data[0]["title"] == "Close full test" + + +@pytest.mark.asyncio +async def test_reopen_brief_default(mcp_client): + """Test reopen returns OperationResult by default (brief=True).""" + import json + + # Create and close issue first + create_result = await mcp_client.call_tool( + "create", {"title": "Reopen brief test", "brief": False} + ) + created = json.loads(create_result.content[0].text) + issue_id = created["id"] + + await mcp_client.call_tool("close", {"issue_id": issue_id}) + + # Reopen with default brief=True + reopen_result = await mcp_client.call_tool( + "reopen", {"issue_ids": [issue_id]} + ) + + data = json.loads(reopen_result.content[0].text) + assert isinstance(data, list) + assert len(data) == 1 + assert data[0]["id"] == issue_id + assert data[0]["action"] == "reopened" + + +@pytest.mark.asyncio +async def test_show_brief(mcp_client): + """Test show with brief=True returns BriefIssue.""" + import json + + # Create issue first + create_result = await mcp_client.call_tool( + "create", + {"title": "Show brief test", "description": "Long description", "brief": False}, + ) + created = json.loads(create_result.content[0].text) + issue_id = created["id"] + + # Show with brief=True + show_result = await mcp_client.call_tool( + "show", {"issue_id": issue_id, "brief": True} + ) + + data = json.loads(show_result.content[0].text) + # BriefIssue has only: id, title, status, priority + assert data["id"] == issue_id + assert data["title"] == "Show brief test" + assert data["status"] == "open" + assert "priority" in data + # Should NOT have full Issue fields + assert "description" not in data + assert "dependencies" not in data + + +@pytest.mark.asyncio +async def test_show_fields_projection(mcp_client): + """Test show with fields parameter for custom projection.""" + import json + + # Create issue first + create_result = await mcp_client.call_tool( + "create", + { + "title": "Fields test", + "description": "Test description", + "priority": 1, + "brief": False, + }, + ) + created = json.loads(create_result.content[0].text) + issue_id = created["id"] + + # Show with specific fields + show_result = await mcp_client.call_tool( + "show", {"issue_id": issue_id, "fields": ["id", "title", "priority"]} + ) + + data = json.loads(show_result.content[0].text) + # Should have only requested fields + assert data["id"] == issue_id + assert data["title"] == "Fields test" + assert data["priority"] == 1 + # Should NOT have other fields + assert "description" not in data + assert "status" not in data + + +@pytest.mark.asyncio +async def test_show_fields_invalid(mcp_client): + """Test show with invalid fields raises error.""" + import json + from fastmcp.exceptions import ToolError + + # Create issue first + create_result = await mcp_client.call_tool( + "create", {"title": "Invalid fields test", "brief": False} + ) + created = json.loads(create_result.content[0].text) + issue_id = created["id"] + + # Show with invalid field should raise ToolError + with pytest.raises(ToolError) as exc_info: + await mcp_client.call_tool( + "show", {"issue_id": issue_id, "fields": ["id", "nonexistent_field"]} + ) + + # Verify error message mentions invalid field + assert "Invalid field" in str(exc_info.value) + + +@pytest.mark.asyncio +async def test_show_max_description_length(mcp_client): + """Test show with max_description_length truncates description.""" + import json + + # Create issue with long description + long_desc = "A" * 200 + create_result = await mcp_client.call_tool( + "create", + {"title": "Truncate test", "description": long_desc, "brief": False}, + ) + created = json.loads(create_result.content[0].text) + issue_id = created["id"] + + # Show with truncation + show_result = await mcp_client.call_tool( + "show", {"issue_id": issue_id, "max_description_length": 50} + ) + + data = json.loads(show_result.content[0].text) + # Description should be truncated + assert len(data["description"]) <= 53 # 50 + "..." + assert data["description"].endswith("...") + + +@pytest.mark.asyncio +async def test_list_brief(mcp_client): + """Test list with brief=True returns BriefIssue format.""" + import json + + # Create some issues + await mcp_client.call_tool( + "create", {"title": "List brief 1", "priority": 1, "brief": False} + ) + await mcp_client.call_tool( + "create", {"title": "List brief 2", "priority": 2, "brief": False} + ) + + # List with brief=True + result = await mcp_client.call_tool("list", {"brief": True}) + issues = json.loads(result.content[0].text) + + assert len(issues) >= 2 + for issue in issues: + # BriefIssue has only: id, title, status, priority + assert "id" in issue + assert "title" in issue + assert "status" in issue + assert "priority" in issue + # Should NOT have full Issue fields + assert "description" not in issue + assert "issue_type" not in issue + + +@pytest.mark.asyncio +async def test_ready_brief(mcp_client): + """Test ready with brief=True returns BriefIssue format.""" + import json + + # Create a ready issue + await mcp_client.call_tool( + "create", {"title": "Ready brief test", "priority": 1, "brief": False} + ) + + # Ready with brief=True + result = await mcp_client.call_tool("ready", {"brief": True, "limit": 100}) + issues = json.loads(result.content[0].text) + + assert len(issues) >= 1 + for issue in issues: + # BriefIssue has only: id, title, status, priority + assert "id" in issue + assert "title" in issue + assert "status" in issue + assert "priority" in issue + # Should NOT have full Issue fields + assert "description" not in issue + + +@pytest.mark.asyncio +async def test_blocked_brief(mcp_client): + """Test blocked with brief=True returns BriefIssue format.""" + import json + + # Create blocking dependency + blocking_result = await mcp_client.call_tool( + "create", {"title": "Blocker for brief test", "brief": False} + ) + blocking = json.loads(blocking_result.content[0].text) + + blocked_result = await mcp_client.call_tool( + "create", {"title": "Blocked for brief test", "brief": False} + ) + blocked = json.loads(blocked_result.content[0].text) + + await mcp_client.call_tool( + "dep", + {"issue_id": blocked["id"], "depends_on_id": blocking["id"], "dep_type": "blocks"}, + ) + + # Blocked with brief=True + result = await mcp_client.call_tool("blocked", {"brief": True}) + issues = json.loads(result.content[0].text) + + # Find our blocked issue + our_blocked = [i for i in issues if i["id"] == blocked["id"]] + assert len(our_blocked) == 1 + # BriefIssue format + assert "title" in our_blocked[0] + assert "status" in our_blocked[0] + # Should NOT have BlockedIssue-specific fields + assert "blocked_by" not in our_blocked[0] + + +@pytest.mark.asyncio +async def test_show_brief_deps(mcp_client): + """Test show with brief_deps=True returns compact dependencies.""" + import json + + # Create two issues with dependency + dep_result = await mcp_client.call_tool( + "create", {"title": "Dependency issue", "brief": False} + ) + dep_issue = json.loads(dep_result.content[0].text) + + main_result = await mcp_client.call_tool( + "create", {"title": "Main issue", "brief": False} + ) + main_issue = json.loads(main_result.content[0].text) + + await mcp_client.call_tool( + "dep", + {"issue_id": main_issue["id"], "depends_on_id": dep_issue["id"], "dep_type": "blocks"}, + ) + + # Show with brief_deps=True + show_result = await mcp_client.call_tool( + "show", {"issue_id": main_issue["id"], "brief_deps": True} + ) + + data = json.loads(show_result.content[0].text) + # Full issue data + assert data["id"] == main_issue["id"] + assert data["title"] == "Main issue" + # Dependencies should be compact (BriefDep format) + assert len(data["dependencies"]) >= 1 + dep = data["dependencies"][0] + assert "id" in dep + assert "title" in dep + assert "status" in dep + # BriefDep should NOT have full LinkedIssue fields + assert "description" not in dep From 27ddbd6ca090c5562f958f442ffb53301a5b05d6 Mon Sep 17 00:00:00 2001 From: Steve Yegge Date: Sat, 20 Dec 2025 21:56:28 -0800 Subject: [PATCH 11/18] chore: bump version to 0.32.1 MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Changes in 0.32.1: - feat(mcp): Add output control params (PR#667) - brief, brief_deps, fields, max_description_length - feat(mcp): Add filtering params - labels, labels_any, query, unassigned, sort_policy - fix(pin): Add pinned to allowed update fields (gt-zr0a) šŸ¤– Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 --- .claude-plugin/marketplace.json | 2 +- .claude-plugin/plugin.json | 2 +- CHANGELOG.md | 26 ++++++++++++++++++- cmd/bd/info.go | 10 +++++++ cmd/bd/templates/hooks/post-checkout | 2 +- cmd/bd/templates/hooks/post-merge | 2 +- cmd/bd/templates/hooks/pre-commit | 2 +- cmd/bd/templates/hooks/pre-push | 2 +- cmd/bd/version.go | 2 +- integrations/beads-mcp/pyproject.toml | 2 +- .../beads-mcp/src/beads_mcp/__init__.py | 2 +- npm-package/package.json | 2 +- 12 files changed, 45 insertions(+), 11 deletions(-) diff --git a/.claude-plugin/marketplace.json b/.claude-plugin/marketplace.json index bf88520c..eae5790a 100644 --- a/.claude-plugin/marketplace.json +++ b/.claude-plugin/marketplace.json @@ -9,7 +9,7 @@ "name": "beads", "source": "./", "description": "AI-supervised issue tracker for coding workflows", - "version": "0.32.0" + "version": "0.32.1" } ] } diff --git a/.claude-plugin/plugin.json b/.claude-plugin/plugin.json index 19cff859..85474ea6 100644 --- a/.claude-plugin/plugin.json +++ b/.claude-plugin/plugin.json @@ -1,7 +1,7 @@ { "name": "beads", "description": "AI-supervised issue tracker for coding workflows. Manage tasks, discover work, and maintain context with simple CLI commands.", - "version": "0.32.0", + "version": "0.32.1", "author": { "name": "Steve Yegge", "url": "https://github.com/steveyegge" diff --git a/CHANGELOG.md b/CHANGELOG.md index 579a3ddf..869da647 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -7,7 +7,31 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ## [Unreleased] -## [0.32.0] - 2025-12-20 +## [0.32.1] - 2025-12-20 + +## [0.32.1] - 2025-12-21 + +### Added + +- **MCP output control parameters** (PR#667) - Reduce context window usage by up to 97% + - `brief` - Return minimal responses: `BriefIssue` for reads, `OperationResult` for writes + - `brief_deps` - Full issue with compact dependencies + - `fields` - Custom field projection with validation + - `max_description_length` - Truncate long descriptions + - New models: `BriefIssue`, `BriefDep`, `OperationResult` + - Default `brief=True` for writes (minimal confirmations) + +- **MCP filtering parameters** - Align MCP tools with CLI capabilities + - `labels` / `labels_any` - AND/OR label filtering + - `query` - Title search (case-insensitive) + - `unassigned` - Filter to unassigned issues + - `sort_policy` - Sort ready work by hybrid/priority/oldest + +### Fixed + +- **Pin field not in allowed update fields** (gt-zr0a) + - `bd update --pinned` was failing with "invalid field" error + - Added `pinned` to allowedUpdateFields and importer ## [0.32.0] - 2025-12-20 diff --git a/cmd/bd/info.go b/cmd/bd/info.go index fe6e2000..4e1790d1 100644 --- a/cmd/bd/info.go +++ b/cmd/bd/info.go @@ -287,6 +287,16 @@ type VersionChange struct { // versionChanges contains agent-actionable changes for recent versions var versionChanges = []VersionChange{ + { + Version: "0.32.1", + Date: "2025-12-21", + Changes: []string{ + "NEW: MCP output control params (PR#667) - brief, brief_deps, fields, max_description_length", + "NEW: MCP filtering params - labels, labels_any, query, unassigned, sort_policy", + "NEW: BriefIssue, BriefDep, OperationResult models for 97% context reduction", + "FIX: Pin field not in allowed update fields (gt-zr0a) - bd update --pinned now works", + }, + }, { Version: "0.32.0", Date: "2025-12-20", diff --git a/cmd/bd/templates/hooks/post-checkout b/cmd/bd/templates/hooks/post-checkout index c63997fd..0442752a 100755 --- a/cmd/bd/templates/hooks/post-checkout +++ b/cmd/bd/templates/hooks/post-checkout @@ -1,6 +1,6 @@ #!/bin/sh # bd-shim v1 -# bd-hooks-version: 0.32.0 +# bd-hooks-version: 0.32.1 # # bd (beads) post-checkout hook - thin shim # diff --git a/cmd/bd/templates/hooks/post-merge b/cmd/bd/templates/hooks/post-merge index 567a9fb3..1fde4c7a 100755 --- a/cmd/bd/templates/hooks/post-merge +++ b/cmd/bd/templates/hooks/post-merge @@ -1,6 +1,6 @@ #!/bin/sh # bd-shim v1 -# bd-hooks-version: 0.32.0 +# bd-hooks-version: 0.32.1 # # bd (beads) post-merge hook - thin shim # diff --git a/cmd/bd/templates/hooks/pre-commit b/cmd/bd/templates/hooks/pre-commit index 7dc18c81..5b9adfdc 100755 --- a/cmd/bd/templates/hooks/pre-commit +++ b/cmd/bd/templates/hooks/pre-commit @@ -1,6 +1,6 @@ #!/bin/sh # bd-shim v1 -# bd-hooks-version: 0.32.0 +# bd-hooks-version: 0.32.1 # # bd (beads) pre-commit hook - thin shim # diff --git a/cmd/bd/templates/hooks/pre-push b/cmd/bd/templates/hooks/pre-push index b34f0e03..c6084c5e 100755 --- a/cmd/bd/templates/hooks/pre-push +++ b/cmd/bd/templates/hooks/pre-push @@ -1,6 +1,6 @@ #!/bin/sh # bd-shim v1 -# bd-hooks-version: 0.32.0 +# bd-hooks-version: 0.32.1 # # bd (beads) pre-push hook - thin shim # diff --git a/cmd/bd/version.go b/cmd/bd/version.go index 27b6aad2..b4467553 100644 --- a/cmd/bd/version.go +++ b/cmd/bd/version.go @@ -14,7 +14,7 @@ import ( var ( // Version is the current version of bd (overridden by ldflags at build time) - Version = "0.32.0" + Version = "0.32.1" // Build can be set via ldflags at compile time Build = "dev" // Commit and branch the git revision the binary was built from (optional ldflag) diff --git a/integrations/beads-mcp/pyproject.toml b/integrations/beads-mcp/pyproject.toml index 6fd321c9..5d08ba03 100644 --- a/integrations/beads-mcp/pyproject.toml +++ b/integrations/beads-mcp/pyproject.toml @@ -1,6 +1,6 @@ [project] name = "beads-mcp" -version = "0.32.0" +version = "0.32.1" description = "MCP server for beads issue tracker." readme = "README.md" requires-python = ">=3.10" diff --git a/integrations/beads-mcp/src/beads_mcp/__init__.py b/integrations/beads-mcp/src/beads_mcp/__init__.py index 822dcee2..f5ff5a2c 100644 --- a/integrations/beads-mcp/src/beads_mcp/__init__.py +++ b/integrations/beads-mcp/src/beads_mcp/__init__.py @@ -4,4 +4,4 @@ This package provides an MCP (Model Context Protocol) server that exposes beads (bd) issue tracker functionality to MCP Clients. """ -__version__ = "0.32.0" +__version__ = "0.32.1" diff --git a/npm-package/package.json b/npm-package/package.json index 6092a6f4..98e203be 100644 --- a/npm-package/package.json +++ b/npm-package/package.json @@ -1,6 +1,6 @@ { "name": "@beads/bd", - "version": "0.32.0", + "version": "0.32.1", "description": "Beads issue tracker - lightweight memory system for coding agents with native binary support", "main": "bin/bd.js", "bin": { From cad4f49f6480a41831a9c05aad801a95650cdb08 Mon Sep 17 00:00:00 2001 From: Steve Yegge Date: Sat, 20 Dec 2025 21:56:38 -0800 Subject: [PATCH 12/18] bd sync: 2025-12-20 21:56:38 --- .beads/issues.jsonl | 607 ++++++++++++++++++++++---------------------- 1 file changed, 310 insertions(+), 297 deletions(-) diff --git a/.beads/issues.jsonl b/.beads/issues.jsonl index 102489e2..13a8c9df 100644 --- a/.beads/issues.jsonl +++ b/.beads/issues.jsonl @@ -1,305 +1,318 @@ -{"id":"bd-05a8","title":"Split large cmd/bd files: doctor.go (2948 lines), sync.go (2121 lines)","description":"Code health review found several oversized files:\n\n1. doctor.go - 2948 lines, 48 functions mixed together\n - Should split into doctor/checks/*.go for individual diagnostics\n - applyFixes() and previewFixes() are nearly identical\n\n2. sync.go - 2121 lines\n - ZFC (Zero Flush Check) logic embedded inline (lines 213-247)\n - Multiple mode handlers should be extracted\n\n3. init.go - 1732 lines\n4. compact.go - 1097 lines\n5. show.go - 1069 lines\n\nRecommendation: Extract into focused sub-packages or split into logical files.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-16T18:17:18.169927-08:00","updated_at":"2025-12-16T18:17:18.169927-08:00","dependencies":[{"issue_id":"bd-05a8","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.846503-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-06px","title":"bd sync --from-main fails: unknown flag --no-git-history","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-17T14:32:02.998106-08:00","updated_at":"2025-12-17T23:13:40.531756-08:00","closed_at":"2025-12-17T17:21:48.506039-08:00"} -{"id":"bd-077e","title":"Add close_reason field to CLI schema and documentation","description":"PR #551 persists close_reason, but the CLI documentation may not mention this field as part of the issue schema.\n\n## Current State\n- close_reason is now persisted in database\n- `bd show --json` will return close_reason in JSON output\n- Documentation may not reflect this new field\n\n## What's Missing\n- CLI reference documentation for close_reason field\n- Schema documentation showing close_reason is a top-level issue field\n- Example output showing close_reason in bd show --json\n- bd close command documentation should mention close_reason parameter is optional\n\n## Suggested Action\n1. Update README.md or CLI reference docs to list close_reason as an issue field\n2. Add example to bd close documentation\n3. Update any type definitions or schema specs\n4. Consider adding close_reason to verbose list output (bd list --verbose)","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-14T14:25:28.448654-08:00","updated_at":"2025-12-14T14:25:28.448654-08:00","dependencies":[{"issue_id":"bd-077e","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:28.449968-08:00","created_by":"stevey","metadata":"{}"}]} -{"id":"bd-0a43","title":"Split monolithic sqlite.go into focused files","description":"internal/storage/sqlite/sqlite.go is 1050 lines containing initialization, 20+ CRUD methods, query building, and schema management.\n\nSplit into:\n- store.go: Store struct \u0026 initialization (150 lines)\n- bead_queries.go: Bead CRUD (300 lines)\n- work_queries.go: Work queries (200 lines) \n- stats_queries.go: Statistics (150 lines)\n- schema.go: Schema \u0026 migrations (150 lines)\n- helpers.go: Common utilities (100 lines)\n\nImpact: Impossible to understand at a glance; hard to find specific functionality; high cognitive load\n\nEffort: 6-8 hours","status":"closed","issue_type":"task","created_at":"2025-11-16T14:51:16.520465-08:00","updated_at":"2025-12-17T23:13:40.533947-08:00","closed_at":"2025-12-17T16:51:30.236012-08:00"} {"id":"bd-0d5p","title":"Fix TestRunSync_Timeout failing on macOS","description":"The hooks timeout test fails because exec.CommandContext doesn't properly terminate child processes of shell scripts on macOS. The test creates a hook that runs 'sleep 60' with a 500ms timeout, but it waits the full 60 seconds.\n\nOptions to fix:\n- Use SysProcAttr{Setpgid: true} to create process group and kill the group\n- Skip test on darwin with build tag\n- Use a different approach for timeout testing\n\nLocation: internal/hooks/hooks_test.go:220-253","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T20:52:51.771217-08:00","updated_at":"2025-12-17T23:13:40.532688-08:00","closed_at":"2025-12-17T17:23:55.678799-08:00"} -{"id":"bd-0fvq","title":"bd doctor should recommend bd prime migration for existing repos","description":"bd doctor should detect old beads integration patterns and recommend migrating to bd prime approach.\n\n## Current behavior\n- bd doctor checks if Claude hooks are installed globally\n- Doesn't check project-level integration (AGENTS.md, CLAUDE.md)\n- Doesn't recommend migration for repos using old patterns\n\n## Desired behavior\nbd doctor should detect and suggest:\n\n1. **Old slash command pattern detected**\n - Check for /beads:* references in AGENTS.md, CLAUDE.md\n - Suggest: These slash commands are deprecated, use bd prime hooks instead\n \n2. **No agent documentation**\n - Check if AGENTS.md or CLAUDE.md exists\n - Suggest: Run 'bd onboard' or 'bd setup claude' to document workflow\n \n3. **Old MCP-only pattern**\n - Check for instructions to use MCP tools but no bd prime hooks\n - Suggest: Add bd prime hooks for better token efficiency\n\n4. **Migration path**\n - Show: 'Run bd setup claude to add SessionStart/PreCompact hooks'\n - Show: 'Update AGENTS.md to reference bd prime instead of slash commands'\n\n## Example output\n\nāš  Warning: Old beads integration detected in CLAUDE.md\n Found: /beads:* slash command references (deprecated)\n Recommend: Migrate to bd prime hooks for better token efficiency\n Fix: Run 'bd setup claude' and update CLAUDE.md\n\nšŸ’” Tip: bd prime + hooks reduces token usage by 80-99% vs slash commands\n MCP mode: ~50 tokens vs ~10.5k for full MCP scan\n CLI mode: ~1-2k tokens with automatic context recovery\n\n## Benefits\n- Helps existing repos adopt new best practices\n- Clear migration path for users\n- Better token efficiency messaging","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-12T03:20:25.567748-08:00","updated_at":"2025-11-12T03:20:25.567748-08:00"} -{"id":"bd-0kai","title":"Work on beads-ocs: Thin shim hooks to eliminate version d...","description":"Work on beads-ocs: Thin shim hooks to eliminate version drift (GH#615). Replace full hook scripts with thin shims that call bd hooks run. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:57:22.91347-08:00","updated_at":"2025-12-20T00:26:12.605248-08:00","closed_at":"2025-12-19T23:24:08.828172-08:00"} -{"id":"bd-0vg","title":"Pinned issues: persistent context markers","description":"Add ability to pin issues so they remain visible and are excluded from work-finding commands. Pinned issues serve as persistent context markers (handoffs, architectural notes, recovery instructions) that should not be claimed as work items.\n\nUse Cases:\n1. Handoff messages - Pin session handoffs so new agents always see them\n2. Architecture decisions - Pin ADRs or design notes for reference \n3. Recovery context - Pin amnesia-cure notes that help agents orient\n\nCore commands: bd pin, bd unpin, bd list --pinned/--no-pinned","status":"open","priority":1,"issue_type":"epic","created_at":"2025-12-18T23:33:10.911092-08:00","updated_at":"2025-12-18T23:33:17.882415-08:00"} -{"id":"bd-0w5","title":"Fix update-hooks verification in version-bump.yaml","description":"The update-hooks task verification command at version-bump.yaml:358 always succeeds due to '|| echo ...' fallback. Remove the fallback so verification actually fails when hooks aren't installed.","status":"closed","priority":3,"issue_type":"bug","created_at":"2025-12-17T22:23:06.55467-08:00","updated_at":"2025-12-17T22:34:07.290409-08:00","closed_at":"2025-12-17T22:34:07.290409-08:00"} -{"id":"bd-0zp7","title":"Add missing hook calls in mail reply and ack","description":"The mail commands are missing hook calls:\n\n1. runMailReply (mail.go:525-672) creates a message but doesn't call hookRunner.Run(hooks.EventMessage, ...) after creating the reply in direct mode (around line 640)\n\n2. runMailAck (mail.go:432-523) closes messages but doesn't call hookRunner.Run(hooks.EventClose, ...) after closing each message (around line 487 for daemon mode, 493 for direct mode)\n\nThis means GGT hooks won't fire for replies or message acknowledgments.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T20:52:53.069412-08:00","updated_at":"2025-12-17T23:13:40.532054-08:00","closed_at":"2025-12-17T17:22:59.368024-08:00"} -{"id":"bd-14ie","title":"Work on beads-2vn: Add simple built-in beads viewer (GH#6...","description":"Work on beads-2vn: Add simple built-in beads viewer (GH#654). Add bd list --pretty with --watch flag, tree view with priority/status symbols. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:47.305831-08:00","updated_at":"2025-12-20T00:26:12.605897-08:00","closed_at":"2025-12-19T23:23:13.928323-08:00"} -{"id":"bd-1slh","title":"Investigate charmbracelet-based TUI for beads","description":"Now that we've merged the create-form command (PR #603) which uses charmbracelet/huh, investigate whether beads should have a more comprehensive TUI.\n\nConsiderations:\n- Should this be in core or a separate binary (bd-tui)?\n- What functionality would benefit from a TUI? (list view, issue details, search, bulk operations)\n- Plugin/extension architecture vs build tags vs separate binary\n- Dependency cost vs user experience tradeoff\n- Target audience: humans who want interactive workflows vs CLI/scripting users\n\nRelated: PR #603 added charmbracelet/huh dependency for create-form command.","status":"open","priority":3,"issue_type":"feature","created_at":"2025-12-17T14:20:51.503563-08:00","updated_at":"2025-12-17T14:20:51.503563-08:00"} -{"id":"bd-1tw","title":"Fix G104 errors unhandled in internal/storage/sqlite/queries.go:1186","description":"Linting issue: G104: Errors unhandled (gosec) at internal/storage/sqlite/queries.go:1186:2. Error: rows.Close()","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:13.051671889-07:00","updated_at":"2025-12-17T23:13:40.53486-08:00","closed_at":"2025-12-17T16:46:11.0289-08:00"} -{"id":"bd-20j","title":"sync branch not match config","description":"./bd sync\nā†’ Exporting pending changes to JSONL...\nā†’ No changes to commit\nā†’ Pulling from sync branch 'gh-386'...\nError pulling from sync branch: failed to create worktree: failed to create worktree parent directory: mkdir /var/home/matt/dev/beads/worktree-db-fail/.git: not a directory\nmatt@blufin-framation ~/d/b/worktree-db-fail (worktree-db-fail) [1]\u003e bd config list\n\nConfiguration:\n auto_compact_enabled = false\n compact_batch_size = 50\n compact_model = claude-3-5-haiku-20241022\n compact_parallel_workers = 5\n compact_tier1_days = 30\n compact_tier1_dep_levels = 2\n compact_tier2_commits = 100\n compact_tier2_days = 90\n compact_tier2_dep_levels = 5\n compaction_enabled = false\n issue_prefix = worktree-db-fail\n sync.branch = worktree-db-fail","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-08T06:49:04.449094018-07:00","updated_at":"2025-12-08T06:49:04.449094018-07:00"} -{"id":"bd-28db","title":"Add 'bd status' command for issue database overview","description":"Implement a bd status command that provides a quick snapshot of the issue database state, similar to how git status shows working tree state.\n\nExpected output: Show summary including counts by state (open, in-progress, blocked, closed), recent activity (last 7 days), and quick overview without needing multiple queries.\n\nExample output showing issue counts, recent activity stats, and pointer to bd list for details.\n\nProposed options: --all (show all issues), --assigned (show issues assigned to current user), --json (JSON format output)\n\nUse cases: Quick project health check, onboarding for new contributors, integration with shell prompts or CI/CD, daily standup reference","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-02T17:25:59.203549-08:00","updated_at":"2025-11-02T17:25:59.203549-08:00"} -{"id":"bd-2ep8","title":"Update CHANGELOG.md with release notes","description":"Add meaningful release notes to CHANGELOG.md describing what changed in 0.30.7","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649053-08:00","updated_at":"2025-12-19T22:57:31.69559-08:00","closed_at":"2025-12-19T22:57:31.69559-08:00","close_reason":"Updated CHANGELOG.md with release notes","dependencies":[{"issue_id":"bd-2ep8","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.650816-08:00","created_by":"stevey"},{"issue_id":"bd-2ep8","depends_on_id":"bd-rupw","type":"blocks","created_at":"2025-12-19T22:56:48.651136-08:00","created_by":"stevey"}]} -{"id":"bd-2oo","title":"Edge Schema Consolidation: Unify all edges in dependencies table","description":"Consolidate all edge types into the dependency table per decision 004.\n\n## Changes\n- Add metadata column to dependencies table\n- Add thread_id column for conversation grouping\n- Remove redundant Issue fields: replies_to, relates_to, duplicate_of, superseded_by\n- Update all code to use dependencies API\n- Migration script for existing data\n- JSONL format change (breaking)\n\nReference: ~/gt/hop/decisions/004-edge-schema-consolidation.md","status":"closed","issue_type":"epic","created_at":"2025-12-18T02:01:48.785558-08:00","updated_at":"2025-12-18T02:49:10.61237-08:00","closed_at":"2025-12-18T02:49:10.61237-08:00","close_reason":"Phase 4 complete: all edge fields removed, dependencies API used exclusively"} -{"id":"bd-2oo.1","title":"Add metadata and thread_id columns to dependencies table","description":"Schema changes:\n- ALTER TABLE dependencies ADD COLUMN metadata TEXT DEFAULT '{}'\n- ALTER TABLE dependencies ADD COLUMN thread_id TEXT DEFAULT ''\n- CREATE INDEX idx_dependencies_thread ON dependencies(thread_id) WHERE thread_id != ''","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:00.468223-08:00","updated_at":"2025-12-18T02:49:10.575133-08:00","closed_at":"2025-12-18T02:49:10.575133-08:00","close_reason":"Phase 4 complete: all edge fields removed, dependencies API used exclusively","dependencies":[{"issue_id":"bd-2oo.1","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:00.470012-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-2oo.2","title":"Remove redundant edge fields from Issue struct","description":"Remove from Issue struct:\n- RepliesTo -\u003e dependency with type replies-to\n- RelatesTo -\u003e dependencies with type relates-to \n- DuplicateOf -\u003e dependency with type duplicates\n- SupersededBy -\u003e dependency with type supersedes\n\nKeep: Sender, Ephemeral (these are attributes, not relationships)","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:00.891206-08:00","updated_at":"2025-12-18T02:49:10.584381-08:00","closed_at":"2025-12-18T02:49:10.584381-08:00","close_reason":"Phase 4 complete: all edge fields removed, dependencies API used exclusively","dependencies":[{"issue_id":"bd-2oo.2","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:00.891655-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-2oo.3","title":"Update all code to use dependencies API for edges","description":"Find and update all code that reads/writes:\n- replies_to field -\u003e use dependency API\n- relates_to field -\u003e use dependency API\n- duplicate_of field -\u003e use dependency API\n- superseded_by field -\u003e use dependency API\n\nCommands affected: bd mail, bd relate, bd duplicate, bd supersede, bd show, etc.","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:01.317006-08:00","updated_at":"2025-12-18T02:49:10.59233-08:00","closed_at":"2025-12-18T02:49:10.59233-08:00","close_reason":"Phase 4 complete: all edge fields removed, dependencies API used exclusively","dependencies":[{"issue_id":"bd-2oo.3","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:01.31856-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-2oo.4","title":"Create migration script for edge field to dependency conversion","description":"Migration must:\n1. Read existing JSONL with old fields\n2. Convert field values to dependency records\n3. Write updated JSONL without old fields\n4. Handle edge cases (missing refs, duplicates)\n\nRun via: bd migrate or automatic on bd prime","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:01.760277-08:00","updated_at":"2025-12-18T02:49:10.602446-08:00","closed_at":"2025-12-18T02:49:10.602446-08:00","close_reason":"Phase 4 complete: all edge fields removed, dependencies API used exclusively","dependencies":[{"issue_id":"bd-2oo.4","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:01.760694-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-2q6d","title":"Beads commands operate on stale database without warning","description":"All beads read operations should validate database is in sync with JSONL before proceeding.\n\n**Current Behavior:**\n- Commands can query/read from stale database\n- Only mutation operations (like 'bd sync') check if JSONL is newer\n- User gets incorrect results without realizing database is out of sync\n\n**Expected Behavior:**\n- All beads commands should have pre-flight check for database freshness\n- If JSONL is newer than database, refuse to operate with error: \"Database out of sync. Run 'bd import' first.\"\n- Same safety check that exists for 'bd sync' should apply to ALL operations\n\n**Impact:**\n- Users make decisions based on incomplete/outdated data\n- Silent failures lead to confusion (e.g., thinking issues don't exist when they do)\n- Similar to running git commands on stale repo without being warned to pull\n\n**Example:**\n- Searched for bd-g9eu issue file: not found\n- Issue exists in .beads/issues.jsonl (in git)\n- Database was stale, but no warning was given\n- Led to incorrect conclusion that issue was already closed/deleted","notes":"## Implementation Complete\n\n**Phase 1: Created staleness check (cmd/bd/staleness.go)**\n- ensureDatabaseFresh() function checks JSONL mtime vs last_import_time\n- Returns error with helpful message when database is stale\n- Auto-skips in daemon mode (daemon has auto-import)\n\n**Phase 2: Added to all read commands**\n- list, show, ready, status, stale, info, duplicates, validate\n- Check runs before database queries in direct mode\n- Daemon mode already protected via checkAndAutoImportIfStale()\n\n**Phase 3: Code Review Findings**\nSee follow-up issues:\n- bd-XXXX: Add warning when staleness check errors\n- bd-YYYY: Improve CheckStaleness error handling\n- bd-ZZZZ: Refactor redundant daemon checks (low priority)\n\n**Testing:**\n- Build successful: go build ./cmd/bd\n- Binary works: ./bd --version\n- Ready for manual testing\n\n**Next Steps:**\n1. Test with stale database scenario\n2. Implement review improvements\n3. Close issue when tests pass","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-20T19:33:40.019297-05:00","updated_at":"2025-12-17T23:13:40.535149-08:00","closed_at":"2025-12-17T19:11:12.982639-08:00"} -{"id":"bd-2wh","title":"Test pinned for stats","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-18T21:47:09.334108-08:00","updated_at":"2025-12-18T21:47:25.17917-08:00","deleted_at":"2025-12-18T21:47:25.17917-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-379","title":"Implement `bd setup cursor` for Cursor IDE integration","description":"Create a `bd setup cursor` command that integrates Beads workflow into Cursor IDE via .cursorrules file. Unlike Claude Code (which has hooks), Cursor uses a static rules file to provide context to its AI.","status":"open","priority":3,"issue_type":"feature","created_at":"2025-11-11T23:32:22.170083-08:00","updated_at":"2025-11-11T23:32:22.170083-08:00"} -{"id":"bd-3852","title":"Add orphan detection migration","description":"Create migration to detect orphaned children in existing databases. Query: SELECT id FROM issues WHERE id LIKE '%.%' AND substr(id, 1, instr(id || '.', '.') - 1) NOT IN (SELECT id FROM issues). Log results, let user decide action (delete orphans or convert to top-level).","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-04T12:32:30.727044-08:00","updated_at":"2025-11-04T12:32:30.727044-08:00"} -{"id":"bd-3ggb","title":"Rebuild local binary","description":"Build and verify: go build -o bd ./cmd/bd \u0026\u0026 ./bd version","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:03.101428-08:00","updated_at":"2025-12-18T22:46:40.955673-08:00","closed_at":"2025-12-18T22:46:40.955673-08:00","dependencies":[{"issue_id":"bd-3ggb","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.748289-08:00","created_by":"daemon"},{"issue_id":"bd-3ggb","depends_on_id":"bd-4y4g","type":"blocks","created_at":"2025-12-18T22:43:20.950376-08:00","created_by":"daemon"}]} -{"id":"bd-3sz0","title":"Auto-repair stale merge driver configs with invalid placeholders","description":"Old bd versions (\u003c0.24.0) installed merge driver with invalid placeholders %L %R instead of %A %B. Add detection to bd doctor --fix: check if git config merge.beads.driver contains %L or %R, auto-repair to 'bd merge %A %O %A %B'. One-time migration for users who initialized with old versions.","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-21T23:16:10.762808-08:00","updated_at":"2025-11-21T23:16:28.892655-08:00","dependencies":[{"issue_id":"bd-3sz0","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:10.763612-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-3x9o","title":"Merge: bd-by0d","description":"branch: polecat/furiosa\ntarget: main\nsource_issue: bd-by0d\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:21:26.817906-08:00","updated_at":"2025-12-19T23:21:26.817906-08:00"} -{"id":"bd-401h","title":"Work on beads-7jl: Fix Windows installer file locking iss...","description":"Work on beads-7jl: Fix Windows installer file locking issue (GH#652). Close file handle before extraction in postinstall.js. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:57.873767-08:00","updated_at":"2025-12-19T23:20:05.747664-08:00","closed_at":"2025-12-19T23:20:05.747664-08:00"} -{"id":"bd-411u","title":"Document BEADS_DIR pattern for multi-agent workspaces (Gas Town)","description":"Gas Town and similar multi-agent systems need to configure separate beads databases per workspace/rig, distinct from any project-level beads.\n\n## Use Case\n\nIn Gas Town:\n- Each 'rig' (managed project) has multiple agents (polecats, refinery, witness)\n- All agents in a rig should share a single beads database at the rig level\n- This should be separate from any .beads/ the project itself uses\n- The BEADS_DIR env var enables this\n\n## Documentation Needed\n\n1. Add a section to docs explaining BEADS_DIR for multi-agent setups\n2. Example: setting BEADS_DIR in agent startup scripts/hooks\n3. Clarify interaction with project-level .beads/ (BEADS_DIR takes precedence)\n\n## Current Support\n\nAlready implemented in internal/beads/beads.go:FindDatabasePath():\n- BEADS_DIR env var is checked first (preferred)\n- BEADS_DB env var still supported (deprecated)\n- Falls back to .beads/ search in tree\n\nJust needs documentation for the multi-agent workspace pattern.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-15T22:08:22.158027-08:00","updated_at":"2025-12-15T22:08:22.158027-08:00"} -{"id":"bd-47tn","title":"Add bd daemon --stop-all command to kill all daemon processes","description":"Currently there's no easy way to stop all running bd daemon processes. Users must resort to pkill -f 'bd daemon' or similar shell commands.\n\nAdd a --stop-all flag to bd daemon that:\n1. Finds all running bd daemon processes (not just the current repo's daemon)\n2. Gracefully stops them all\n3. Reports how many were stopped\n\nThis is useful when:\n- Multiple daemons are running and causing race conditions\n- User wants a clean slate before running bd sync\n- Debugging daemon-related issues","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-13T06:34:45.080633-08:00","updated_at":"2025-12-16T01:14:49.501989-08:00","closed_at":"2025-12-14T17:33:03.057089-08:00"} +{"id":"bd-o4qy","title":"Improve CheckStaleness error handling","description":"## Problem\n\nCheckStaleness returns 'false' (not stale) for multiple error conditions instead of returning errors. This masks problems.\n\n**Location:** internal/autoimport/autoimport.go:253-285\n\n## Edge Cases That Return False\n\n1. **Invalid last_import_time format** (line 259-262)\n2. **No JSONL file found** (line 267-277) \n3. **JSONL stat fails** (line 279-282)\n\n## Fix\n\nReturn errors for abnormal conditions:\n\n```go\nlastImportTime, err := time.Parse(time.RFC3339, lastImportStr)\nif err != nil {\n return false, fmt.Errorf(\"corrupted last_import_time: %w\", err)\n}\n\nif jsonlPath == \"\" {\n return false, fmt.Errorf(\"no JSONL file found\")\n}\n\nstat, err := os.Stat(jsonlPath)\nif err != nil {\n return false, fmt.Errorf(\"cannot stat JSONL: %w\", err)\n}\n```\n\n## Impact\nMedium - edge cases are rare but should be handled\n\n## Effort \n30 minutes - requires updating callers in RPC server","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-11-20T20:17:27.606219-05:00","updated_at":"2025-12-17T23:13:40.536905-08:00","closed_at":"2025-12-17T19:11:12.965289-08:00","dependencies":[{"issue_id":"bd-o4qy","depends_on_id":"bd-2q6d","type":"blocks","created_at":"2025-11-20T20:18:26.81065-05:00","created_by":"stevey"}]} {"id":"bd-49kw","title":"Workaround for FastMCP outputSchema bug in Claude Code","description":"The beads MCP server (v0.23.1) successfully connects to Claude Code, but all tools fail to load with a schema validation error due to a bug in FastMCP 2.13.1.\n\nError: \"Invalid literal value, expected \\\"object\\\"\" in outputSchema.\n\nRoot Cause: FastMCP generates outputSchema with $ref at root level without \"type\": \"object\" for self-referential models (Issue).\n\nWorkaround: Use slash commands (/beads:ready) or wait for FastMCP fix.\n","status":"open","priority":1,"issue_type":"bug","created_at":"2025-11-20T18:55:39.041831-05:00","updated_at":"2025-11-20T18:55:39.041831-05:00"} -{"id":"bd-4ec8","title":"Widespread double JSON encoding bug in daemon mode RPC calls","description":"Multiple CLI commands had the same double JSON encoding bug found in bd-1048. All commands that called ResolveID via RPC used string(resp.Data) instead of properly unmarshaling the JSON response. This caused IDs to retain JSON quotes (\"bd-1048\" instead of bd-1048), which then got double-encoded when passed to subsequent RPC calls.\n\nAffected commands:\n- bd show (3 instances)\n- bd dep add/remove/tree (5 instances)\n- bd label add/remove/list (3 instances)\n- bd reopen (1 instance)\n\nRoot cause: resp.Data is json.RawMessage (already JSON-encoded), so string() conversion preserves quotes.\n\nFix: Replace all string(resp.Data) with json.Unmarshal(resp.Data, \u0026id) for proper deserialization.\n\nAll commands now tested and working correctly with daemon mode.","status":"closed","issue_type":"bug","created_at":"2025-11-02T22:33:01.632691-08:00","updated_at":"2025-12-17T23:13:40.533631-08:00","closed_at":"2025-12-17T16:26:05.851197-08:00"} -{"id":"bd-4hn","title":"wish: list \u0026 ready show issues as hierarchy tree","description":"`bd ready` and `bd list` just show a flat list, and it's up to the reader to parse which ones are dependent or sub-issues of others. It would be much easier to understand if they were shown in a tree format","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-08T06:38:24.016316945-07:00","updated_at":"2025-12-08T06:39:04.065882225-07:00"} -{"id":"bd-4lm3","title":"Correction: Pinned field already in v0.31.0","description":"Quick correction - the Pinned field is already in the current bd v0.31.0:\n\n```go\n// In beads internal/types/types.go\nPinned bool `json:\"pinned,omitempty\"`\n```\n\nSo you just need to:\n1. Add `Pinned bool `json:\"pinned,omitempty\"`` to BeadsMessage in types.go\n2. Sort pinned messages first in listBeads() after fetching\n\nNo migration needed - the field is already there.\n\n-- Mayor","status":"open","priority":2,"issue_type":"message","assignee":"gastown/crew/max","created_at":"2025-12-20T17:52:27.321458-08:00","updated_at":"2025-12-20T17:52:27.321458-08:00","labels":["from:beads-crew-dave","thread:thread-4dd70157dbc1"]} -{"id":"bd-4nqq","title":"Remove dead test code in info_test.go","description":"Code health review found cmd/bd/info_test.go has two tests permanently skipped:\n\n- TestInfoCommand\n- TestInfoCommandNoDaemon\n\nBoth skip with: 'Manual test - bd info command is working, see manual testing'\n\nThese are essentially dead code. Either automate them or remove them entirely.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:27.554019-08:00","updated_at":"2025-12-16T18:17:27.554019-08:00","dependencies":[{"issue_id":"bd-4nqq","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.381694-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-4q8","title":"bd cleanup --hard should skip tombstone creation for true permanent deletion","description":"## Problem\n\nWhen using bd cleanup --hard --older-than N --force, the command:\n1. Deletes closed issues older than N days (converting them to tombstones with NOW timestamp)\n2. Then tries to prune tombstones older than N days (finds none because they were just created)\n\nThis leaves the database bloated with fresh tombstones that will not be pruned.\n\n## Expected Behavior\n\nIn --hard mode, the deletion should be permanent without creating tombstones, since the user explicitly requested bypassing sync safety.\n\n## Workaround\n\nManually delete from database: sqlite3 .beads/beads.db 'DELETE FROM issues WHERE status=tombstone'\n\n## Fix Options\n\n1. In --hard mode, use a different delete path that does not create tombstones\n2. After deleting, immediately prune the just-created tombstones regardless of age\n3. Pass a skip_tombstone flag to the delete operation\n\nOption 1 is cleanest - --hard should mean permanent delete without tombstone.","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T01:33:36.580657-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-4qfb","title":"Improve bd doctor output formatting for better readability","description":"The current bd doctor output is a wall of text that's hard to process. Consider improvements like:\n- Grouping related checks into collapsible sections\n- Using color/bold for section headers\n- Showing only failures/warnings by default with --verbose for full output\n- Better visual hierarchy between major sections\n- Summary line at top (e.g., '24 checks passed, 0 warnings, 0 errors')","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T09:29:27.557578+11:00","updated_at":"2025-12-13T09:29:27.557578+11:00"} -{"id":"bd-4ri","title":"Fix TestFallbackToDirectModeEnablesFlush deadlock causing 10min test timeout","description":"## Problem\n\nTestFallbackToDirectModeEnablesFlush in direct_mode_test.go deadlocks for 9m59s before timing out, causing the entire test suite to take 10+ minutes instead of \u003c10 seconds.\n\n## Root Cause\n\nDatabase lock contention between test cleanup and flushToJSONL():\n- Test cleanup (line 36) tries to close DB via defer\n- flushToJSONL() (line 132) is still accessing DB\n- Results in deadlock: database/sql.(*DB).Close() waits for mutex while GetJSONLFileHash() holds it\n\n## Stack Trace Evidence\n\n```\ngoroutine 512 [sync.Mutex.Lock, 9 minutes]:\ndatabase/sql.(*DB).Close(0x14000643790)\n .../database/sql/sql.go:927 +0x84\ngithub.com/steveyegge/beads/cmd/bd.TestFallbackToDirectModeEnablesFlush.func1()\n .../direct_mode_test.go:36 +0xf4\n\nWhile goroutine running flushToJSONL() holds DB connection via GetJSONLFileHash()\n```\n\n## Impact\n\n- Test suite: 10+ minutes ā†’ should be \u003c10 seconds\n- ALL other tests pass in ~4 seconds\n- This ONE test accounts for 99.9% of test runtime\n\n## Related\n\nThis is the EXACT same issue documented in MAIN_TEST_REFACTOR_NOTES.md for why main_test.go refactoring was deferred - global state manipulation + DB cleanup = deadlock.\n\n## Fix Approaches\n\n1. **Add proper cleanup sequencing** - stop flush goroutines BEFORE closing DB\n2. **Use test-specific DB lifecycle** - ensure flush completes before cleanup\n3. **Mock the flush mechanism** - avoid real DB for testing this code path \n4. **Add explicit timeout handling** - fail fast with clear error instead of hanging\n\n## Files\n\n- cmd/bd/direct_mode_test.go:36-132\n- cmd/bd/autoflush.go:353 (validateJSONLIntegrity)\n- cmd/bd/autoflush.go:508 (flushToJSONLWithState)\n\n## Acceptance\n\n- Test passes without timeout\n- Test suite completes in \u003c10 seconds\n- No deadlock between cleanup and flush operations","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-21T20:09:00.794372-05:00","updated_at":"2025-12-17T23:13:40.533279-08:00","closed_at":"2025-12-17T17:25:07.626617-08:00"} -{"id":"bd-4sfl","title":"Merge: bd-14ie","description":"branch: polecat/toast\ntarget: main\nsource_issue: bd-14ie\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:23:37.360782-08:00","updated_at":"2025-12-19T23:23:37.360782-08:00"} -{"id":"bd-4uoc","title":"Code Review Followup Summary: PR #481 + PR #551","description":"## Merged PRs Summary\n\n### PR #551: Persist close_reason to issues table\n- āœ… Merged successfully\n- āœ… Bug fix: close_reason now persisted in database column (not just events table)\n- āœ… Comprehensive test coverage added\n- āœ… Handles reopen case (clearing close_reason)\n\n**Followup Issues Filed:**\n- bd-lxzx: Document close_reason in JSONL export format\n- bd-077e: Update CLI documentation for close_reason field\n\n---\n\n### PR #481: Context Engineering Optimizations (80-90% context reduction)\n- āœ… Merged successfully \n- āœ… Lazy tool discovery: discover_tools() + get_tool_info()\n- āœ… Minimal issue models: IssueMinimal (~80% smaller than full Issue)\n- āœ… Result compaction: Auto-compacts results \u003e20 items\n- āœ… All 28 tests passing\n- āš ļø Breaking change: ready() and list() return type changed\n\n**Followup Issues Filed:**\n- bd-b318: Add integration tests for CompactedResult\n- bd-4u2b: Make compaction settings configurable (THRESHOLD, PREVIEW_COUNT)\n- bd-2kf8: Document CompactedResult response format in CONTEXT_ENGINEERING.md\n- bd-pdr2: Document backwards compatibility considerations\n\n---\n\n## Overall Assessment\n\nBoth PRs are production-ready with solid implementations. All critical functionality works and tests pass. Followup issues focus on:\n1. Documentation improvements (5 issues)\n2. Integration test coverage (1 issue)\n3. Configuration flexibility (1 issue)\n4. Backwards compatibility guidance (1 issue)\n\nNo critical bugs or design issues found.\n\n## Review Completed By\nCode review process completed. Issues auto-created for tracking improvements.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:59.214886-08:00","updated_at":"2025-12-14T14:25:59.214886-08:00","dependencies":[{"issue_id":"bd-4uoc","depends_on_id":"bd-otf4","type":"discovered-from","created_at":"2025-12-14T14:25:59.216884-08:00","created_by":"stevey","metadata":"{}"},{"issue_id":"bd-4uoc","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:59.217296-08:00","created_by":"stevey","metadata":"{}"}]} -{"id":"bd-4y4g","title":"Bump version in all files","description":"Run ./scripts/bump-version.sh {{version}} to update 10 version files. Then run with --commit after info.go is updated.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:01.859728-08:00","updated_at":"2025-12-18T22:46:24.537336-08:00","closed_at":"2025-12-18T22:46:24.537336-08:00","dependencies":[{"issue_id":"bd-4y4g","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.623724-08:00","created_by":"daemon"},{"issue_id":"bd-4y4g","depends_on_id":"bd-8v2","type":"blocks","created_at":"2025-12-18T22:43:20.823329-08:00","created_by":"daemon"}]} -{"id":"bd-56x","title":"Review PR #514: fix plugin install docs","description":"Review and merge PR #514 from aspiers. This PR fixes incorrect docs for installing Claude Code plugin from source in docs/PLUGIN.md. Clarifies shell vs Claude Code commands and fixes the . vs ./beads argument issue. URL: https://github.com/anthropics/beads/pull/514","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:15:16.865354+11:00","updated_at":"2025-12-13T07:07:19.729213-08:00","closed_at":"2025-12-13T07:07:19.729213-08:00"} -{"id":"bd-581b80b3","title":"bd find-duplicates - AI-powered duplicate detection","description":"Find semantically duplicate issues.\n\nApproaches:\n1. Mechanical: Exact title/description matching\n2. Embeddings: Cosine similarity (cheap, scalable)\n3. AI: LLM-based semantic comparison (expensive, accurate)\n\nUses embeddings by default for \u003e100 issues.\n\nFiles: cmd/bd/find_duplicates.go (new)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-10-29T20:49:49.126801-07:00","updated_at":"2025-12-17T22:58:34.563511-08:00","closed_at":"2025-12-17T22:58:34.563511-08:00","close_reason":"Closed"} -{"id":"bd-589x","title":"HANDOFF: Version 0.30.7 release in progress","description":"## Context\nDoing a 0.30.7 patch release with bug fixes.\n\n## What's done\n- Fixed #657: bd graph nil pointer crash (graph.go:102)\n- Fixed #652: Windows npm installer file lock (postinstall.js)\n- Updated CHANGELOG.md and info.go\n- Pushed to main, CI running (run 20390861825)\n- Created version-bump molecule template (bd-6s61) and instantiated for 0.30.7 (bd-8pyn)\n\n## In progress\nMolecule bd-8pyn has 3 remaining tasks:\n - bd-dxo7: Wait for CI to pass\n - bd-7l70: Verify release artifacts \n - bd-5c91: Update local installation\n\n## Check CI\n gh run list --repo steveyegge/beads --limit 1\n gh run view 20390861825 --repo steveyegge/beads\n\n## New feature filed\nbd-n777: Timer beads for scheduled agent callbacks\nDesign for Deacon-managed timers that can interrupt agents via tmux\n\n## Resume commands\n bd --no-daemon show bd-8pyn\n gh run list --repo steveyegge/beads --limit 1","status":"closed","priority":2,"issue_type":"message","assignee":"beads/dave","created_at":"2025-12-19T23:06:14.902334-08:00","updated_at":"2025-12-20T00:25:59.596546-08:00","closed_at":"2025-12-20T00:25:59.596546-08:00","close_reason":"Handoff completed - v0.30.7 released","sender":"Steve Yegge","ephemeral":true} -{"id":"bd-5b6e","title":"Add tests for helper functions (GetDirtyIssueHash, GetAllDependencyRecords, export hashes)","description":"Several utility functions have 0% coverage:\n- GetDirtyIssueHash (dirty.go)\n- GetAllDependencyRecords (dependencies.go)\n- GetExportHash, SetExportHash, ClearAllExportHashes (hash.go)\n\nThese are lower priority but should have basic coverage.","status":"open","priority":4,"issue_type":"task","created_at":"2025-11-01T22:40:58.989976-07:00","updated_at":"2025-11-01T22:40:58.989976-07:00"} -{"id":"bd-5qim","title":"Optimize GetReadyWork performance - 752ms on 10K database (target: \u003c50ms)","notes":"# Performance Analysis (10K Issue Database)\n\nAnalyzed using CPU profiles from benchmark suite on Apple M2 Pro.\n\n## Operation Performance\n\n| Operation | Time | Allocations | Memory |\n|----------------------------------|---------|-------------|--------|\n| bd ready (GetReadyWork) | ~752ms | 167,466 | 16MB |\n| bd list (SearchIssues no filter) | ~11.6ms | 89,214 | 5.8MB |\n| bd list (SearchIssues filtered) | ~9.2ms | 62,365 | 3.5MB |\n| bd create (CreateIssue) | ~2.6ms | 146 | 8.6KB |\n| bd update (UpdateIssue) | ~0.32ms | 364 | 15KB |\n| bd close (UpdateIssue) | ~0.32ms | 364 | 15KB |\n\n**Target: \u003c50ms for all operations on 10K database**\n\n**Current issue: GetReadyWork is 15x over target (752ms vs 50ms)**\n\n## Root Cause\n\nGetReadyWork (internal/storage/sqlite/ready.go:90-128) uses recursive CTE to propagate blocking:\n- 65x slower than SearchIssues\n- Recalculates entire blocked issue tree on every call\n- Algorithm:\n 1. Find directly blocked issues via 'blocks' dependencies\n 2. Recursively propagate blockage to descendants (max depth: 50)\n 3. Exclude all blocked issues from results\n\n## CPU Profile Analysis\n\n- Database syscalls (pthread_cond_signal, syscall6): ~75%\n- SQLite engine overhead: inherent to recursive CTE\n- Application code (query construction): \u003c1%\n\n**Bottleneck is the recursive CTE query execution, not application code.**\n\n## Optimization Recommendations\n\n### High Impact (Likely to achieve \u003c50ms target)\n\n1. **Cache blocked issue calculation**\n - Add `blocked_issues` table updated on dependency changes\n - Trade write complexity for read speed (ready called \u003e\u003e dependency changes)\n - Eliminates recursive CTE on every read\n\n2. **Add/verify database indexes**\n ```sql\n CREATE INDEX IF NOT EXISTS idx_dependencies_blocked \n ON dependencies(issue_id, type, depends_on_id);\n CREATE INDEX IF NOT EXISTS idx_issues_status \n ON issues(status);\n ```\n\n### Medium Impact\n\n3. **Reduce allocations** (167K allocations for GetReadyWork)\n - Profile `scanIssues()` for object pooling opportunities\n - Reuse slice capacity for repeated calls\n\n### Low Impact (Not recommended)\n- Query optimization for CRUD operations (already \u003c3ms)\n- Connection pooling tuning (not showing in profiles)\n\n## Verification\n\nRun benchmarks to validate optimization:\n```bash\nmake bench-quick\ngo tool pprof -http=:8080 internal/storage/sqlite/bench-cpu-*.prof\n```\n\nProfile files automatically generated in `internal/storage/sqlite/`.","status":"closed","issue_type":"bug","created_at":"2025-11-14T09:02:46.507526-08:00","updated_at":"2025-12-17T23:13:40.534258-08:00","closed_at":"2025-12-17T16:21:37.918868-08:00"} -{"id":"bd-6fe4622f","title":"Remove unreachable utility functions","description":"Several small utility functions are unreachable:\n\nFiles to clean:\n1. `internal/storage/sqlite/hash.go` - `computeIssueContentHash` (line 17)\n - Check if entire file can be deleted if only contains this function\n\n2. `internal/config/config.go` - `FileUsed` (line 151)\n - Delete unused config helper\n\n3. `cmd/bd/git_sync_test.go` - `verifyIssueOpen` (line 300)\n - Delete dead test helper\n\n4. `internal/compact/haiku.go` - `HaikuClient.SummarizeTier2` (line 81)\n - Tier 2 summarization not implemented\n - Options: implement feature OR delete method\n\nImpact: Removes 50-100 LOC depending on decisions","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-28T16:20:02.434573-07:00","updated_at":"2025-12-17T22:58:34.563993-08:00","closed_at":"2025-12-17T22:58:34.563993-08:00","close_reason":"Closed"} -{"id":"bd-6gd","title":"Remove legacy MCP Agent Mail integration","description":"## Summary\n\nRemove the legacy MCP Agent Mail system that requires an external HTTP server. Keep the native `bd mail` system which stores messages as git-synced issues.\n\n## Background\n\nTwo mail systems exist in the codebase:\n1. **Legacy Agent Mail** (`bd message`) - External server dependency, complex setup\n2. **Native bd mail** (`bd mail`) - Built-in, git-synced, no dependencies\n\nThe legacy system causes confusion and is no longer needed. Gas Town's Town Mail will use the native `bd mail` system.\n\n## Files to Delete\n\n### CLI Command\n- [ ] `cmd/bd/message.go` - The `bd message` command implementation\n\n### MCP Integration\n- [ ] `integrations/beads-mcp/src/beads_mcp/mail.py` - HTTP wrapper for Agent Mail server\n- [ ] `integrations/beads-mcp/src/beads_mcp/mail_tools.py` - MCP tool definitions\n- [ ] `integrations/beads-mcp/tests/test_mail.py` - Tests for legacy mail\n\n### Documentation\n- [ ] `docs/AGENT_MAIL.md`\n- [ ] `docs/AGENT_MAIL_QUICKSTART.md`\n- [ ] `docs/AGENT_MAIL_DEPLOYMENT.md`\n- [ ] `docs/AGENT_MAIL_MULTI_WORKSPACE_SETUP.md`\n- [ ] `docs/adr/002-agent-mail-integration.md`\n\n## Code to Update\n\n- [ ] Remove `message` command registration from `cmd/bd/main.go`\n- [ ] Remove mail tool imports/registration from MCP server `__init__.py` or `server.py`\n- [ ] Check for any other references to Agent Mail in the codebase\n\n## Verification\n\n- [ ] `bd message` command no longer exists\n- [ ] `bd mail` command still works\n- [ ] MCP server starts without errors\n- [ ] Tests pass\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T23:04:04.099935-08:00","updated_at":"2025-12-17T23:13:24.128752-08:00","closed_at":"2025-12-17T23:13:24.128752-08:00","close_reason":"Removed legacy MCP Agent Mail integration. Kept native bd mail system."} -{"id":"bd-6pc","title":"Implement bd pin/unpin commands","description":"Add 'bd pin \u003cid\u003e' and 'bd unpin \u003cid\u003e' commands to toggle the pinned status of issues. Should support multiple IDs like other bd commands.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:28.292937-08:00","updated_at":"2025-12-19T17:43:35.713398-08:00","closed_at":"2025-12-19T00:35:31.612589-08:00","dependencies":[{"issue_id":"bd-6pc","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.119852-08:00","created_by":"daemon"},{"issue_id":"bd-6pc","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.352848-08:00","created_by":"daemon"}]} -{"id":"bd-6rl","title":"Merge3Way public API does not expose TTL parameter","description":"The public Merge3Way() function in merge.go does not allow callers to configure the tombstone TTL. It hard-codes the default via merge3WayWithTTL(). While merge3WayWithTTL() exists, it is unexported (lowercase). This means the CLI and tests cannot configure TTL at merge time. Use cases: testing with different TTL values, per-repository TTL configuration, debugging with short TTL, supporting --ttl flag in bd merge command (mentioned in design doc bd-zvg). Recommendation: Export Merge3WayWithTTL (rename to uppercase). Files: internal/merge/merge.go:77, 292-298","status":"open","priority":3,"issue_type":"feature","created_at":"2025-12-05T16:36:15.756814-08:00","updated_at":"2025-12-05T16:36:15.756814-08:00"} -{"id":"bd-6s61","title":"Version Bump: {{version}}","description":"Release checklist for version {{version}}. This molecule ensures all release steps are completed properly.","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-19T22:55:42.487701-08:00","updated_at":"2025-12-20T01:18:47.905306-08:00","closed_at":"2025-12-20T01:18:47.905306-08:00","close_reason":"Version bump complete","labels":["molecule","template"]} -{"id":"bd-6sm6","title":"Improve test coverage for internal/export (37.1% ā†’ 60%)","description":"The export package has only 37.1% test coverage. Export functionality needs good coverage to ensure data integrity.\n\nCurrent coverage: 37.1%\nTarget coverage: 60%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:06.802277-08:00","updated_at":"2025-12-13T21:01:19.08088-08:00"} -{"id":"bd-746","title":"Fix resolvePartialID stub in workflow.go","description":"The resolvePartialID function at workflow.go:921-925 is a stub that just returns the ID unchanged. Should use utils.ResolvePartialID for proper partial ID resolution in direct mode (non-daemon).","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-17T22:22:57.586917-08:00","updated_at":"2025-12-17T22:34:07.270168-08:00","closed_at":"2025-12-17T22:34:07.270168-08:00"} -{"id":"bd-74w1","title":"Consolidate duplicate path-finding utilities (findJSONLPath, findBeadsDir, findGitRoot)","description":"Code health review found these functions defined in multiple places:\n\n- findJSONLPath() in autoflush.go:45-73 and doctor/fix/migrate.go\n- findBeadsDir() in autoimport.go:197-239 (with git worktree handling)\n- findGitRoot() in autoimport.go:242-269 (Windows path conversion)\n\nThe beads package has public FindBeadsDir() and FindJSONLPath() APIs that should be used consistently.\n\nImpact: Bug fixes need to be applied in multiple places. Git worktree handling may not be replicated everywhere.\n\nFix: Consolidate all implementations to use the beads package APIs. Remove duplicates.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-16T18:17:16.694293-08:00","updated_at":"2025-12-16T18:17:16.694293-08:00","dependencies":[{"issue_id":"bd-74w1","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.526122-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-77gm","title":"Import reports misleading '0 created, 0 updated' when actually importing all issues","description":"When running 'bd import' on a fresh database (no existing issues), the command reports 'Import complete: 0 created, 0 updated' even though it successfully imported all issues from the JSONL file.\n\n**Steps to reproduce:**\n1. Delete .beads/beads.db\n2. Run: bd import .beads/issues.jsonl\n3. Observe output: 'Import complete: 0 created, 0 updated'\n4. Run: bd list\n5. Confirm: All issues are actually present in the database\n\n**Expected behavior:**\nReport the actual number of issues imported, e.g., 'Import complete: 523 created, 0 updated'\n\n**Actual behavior:**\n'Import complete: 0 created, 0 updated' (misleading - makes user think import failed)\n\n**Impact:**\n- Users think import failed when it succeeded\n- Confusing during database sync operations (e.g., after git pull)\n- Makes debugging harder (can't tell if import actually worked)\n\n**Context:**\nDiscovered during VC session when syncing database after git pull. The misleading message caused confusion about whether the database was properly synced with the canonical JSONL file.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-11-09T16:20:13.191156-08:00","updated_at":"2025-11-09T16:20:13.191156-08:00"} -{"id":"bd-7b7h","title":"bd sync --merge fails due to chicken-and-egg: .beads/ always dirty","description":"## Problem\n\nWhen sync.branch is configured (e.g., beads-sync), the bd sync workflow creates a chicken-and-egg problem:\n\n1. `bd sync` commits changes to beads-sync via worktree\n2. `bd sync` copies JSONL to main working dir via `copyJSONLToMainRepo()` (sync.go line 364, worktree.go line 678-685)\n3. The copy is NOT committed to main - it just updates the working tree\n4. `bd sync --merge` checks for clean working dir (sync.go line 1547-1548)\n5. `bd sync --merge` FAILS because .beads/issues.jsonl is uncommitted!\n\n## Impact\n\n- sync.branch workflow is fundamentally broken\n- Users cannot periodically merge beads-sync ā†’ main\n- Main branch always shows as dirty\n- Creates confusion about git state\n\n## Root Cause\n\nsync.go:1547-1548:\n```go\nif len(strings.TrimSpace(string(statusOutput))) \u003e 0 {\n return fmt.Errorf(\"main branch has uncommitted changes, please commit or stash them first\")\n}\n```\n\nThis check blocks merge when ANY uncommitted changes exist, including the .beads/ changes that `bd sync` itself created.\n\n## Proposed Fix\n\nOption A: Exclude .beads/ from the clean check in `mergeSyncBranch`:\n```go\n// Check if there are non-beads uncommitted changes\nstatusCmd := exec.CommandContext(ctx, \"git\", \"status\", \"--porcelain\", \"--\", \":!.beads/\")\n```\n\nOption B: Auto-stash .beads/ changes before merge, restore after\n\nOption C: Change the workflow - do not copy JSONL to main working dir, instead always read from worktree\n\n## Files to Modify\n\n- cmd/bd/sync.go:1540-1549 (mergeSyncBranch function)\n- Possibly internal/syncbranch/worktree.go (copyJSONLToMainRepo)","notes":"## Fix Implemented\n\nModified cmd/bd/sync.go mergeSyncBranch function:\n\n1. **Exclude .beads/ from dirty check** (line 1543):\n Changed `git status --porcelain` to `git status --porcelain -- :!.beads/`\n This allows merge to proceed when only .beads/ has uncommitted changes.\n\n2. **Restore .beads/ to HEAD before merge** (lines 1553-1561):\n Added `git checkout HEAD -- .beads/` before merge to prevent\n \"Your local changes would be overwritten by merge\" errors.\n The .beads/ changes are redundant since they came FROM beads-sync.\n\n## Testing\n\n- All cmd/bd sync/merge tests pass\n- All internal/syncbranch tests pass\n- Manual verification needed for full workflow","status":"tombstone","issue_type":"bug","created_at":"2025-12-16T23:06:06.97703-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-7bbc4e6a","title":"Add MCP server functions for repair commands","description":"**Summary:** Added MCP server repair functions for agent dependency management, system validation, and pollution detection. Implemented across BdClientBase, BdCliClient, and daemon clients to enhance system diagnostics and self-healing capabilities.\n\n**Key Decisions:** \n- Expose repair_deps(), detect_pollution(), validate() via MCP server\n- Create abstract method stubs with fallback to CLI execution\n- Use @mcp.tool decorators for function registration\n\n**Resolution:** Successfully implemented comprehensive repair command infrastructure, enabling more robust system health monitoring and automated remediation with full CLI and daemon support.","notes":"Implemented all three MCP server functions:\n\n1. **repair_deps(fix=False)** - Find/fix orphaned dependencies\n2. **detect_pollution(clean=False)** - Detect/clean test issues \n3. **validate(checks=None, fix_all=False)** - Run comprehensive health checks\n\nChanges:\n- Added abstract methods to BdClientBase\n- Implemented in BdCliClient (CLI execution)\n- Added NotImplementedError stubs in BdDaemonClient (falls back to CLI)\n- Created wrapper functions in tools.py\n- Registered @mcp.tool decorators in server.py\n\nAll commands tested and working with --no-daemon flag.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-28T19:37:55.72639-07:00","updated_at":"2025-12-16T01:08:11.983953-08:00","closed_at":"2025-11-07T19:38:12.152437-08:00"} -{"id":"bd-7di","title":"worktree: any bd command is slow","description":"in a git worktree any bd command is slow, with a 2-3s pause before any results are shown. The identical command with `--no-daemon` is near instant.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-05T15:33:42.924618693-07:00","updated_at":"2025-12-05T15:33:42.924618693-07:00"} -{"id":"bd-7h5","title":"Add pinned field to issue schema","description":"Add boolean 'pinned' field to the issue schema. When true, the issue is marked as a persistent context marker that should not be treated as a work item.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:26.767247-08:00","updated_at":"2025-12-19T00:08:59.854605-08:00","closed_at":"2025-12-19T00:08:59.854605-08:00","close_reason":"Implemented by polecat Slit - pushed to main","dependencies":[{"issue_id":"bd-7h5","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:55.98635-08:00","created_by":"daemon"}]} -{"id":"bd-7h7","title":"bd init should stop running daemon to avoid stale cache","description":"When running bd init, any running daemon continues with stale cached data, causing bd stats and other commands to show old counts.\n\nRepro:\n1. Have daemon running with 788 issues cached\n2. Clean JSONL to 128 issues, delete db, run bd init\n3. bd stats still shows 788 (daemon cache)\n4. Must manually run bd daemon --stop\n\nFix: bd init should automatically stop any running daemon before reinitializing.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T13:26:47.117226-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-7m16","title":"GH#519: bd sync fails when sync.branch is currently checked-out branch","description":"bd sync tries to create worktree for sync.branch even when already on that branch. Should commit directly instead. See GitHub issue #519.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:36.613211-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-7tuu","title":"Commit and push release","description":"git add -A \u0026\u0026 git commit \u0026\u0026 git push to trigger CI","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:02.053382-08:00","updated_at":"2025-12-20T01:23:52.484043-08:00","closed_at":"2025-12-20T01:23:52.484043-08:00","close_reason":"Superseded by 0.30.7 release - already committed and pushed","dependencies":[{"issue_id":"bd-7tuu","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.021087-08:00","created_by":"daemon"},{"issue_id":"bd-7tuu","depends_on_id":"bd-hw3w","type":"blocks","created_at":"2025-12-19T22:56:23.291591-08:00","created_by":"daemon"}]} -{"id":"bd-7yg","title":"Git merge driver uses invalid placeholders (%L, %R instead of %A, %B)","description":"## Problem\n\nThe beads git merge driver is configured with invalid Git placeholders:\n\n```\ngit config merge.beads.driver \"bd merge %A %O %L %R\"\n```\n\nGit doesn't recognize `%L` or `%R` as valid merge driver placeholders. The valid placeholders are:\n- `%O` = base (common ancestor)\n- `%A` = current version (ours)\n- `%B` = other version (theirs)\n\n## Impact\n\n- Affects ALL users when they have `.beads/beads.jsonl` merge conflicts\n- Automatic JSONL merge fails with error: \"error reading left file: failed to open file: open 7: no such file or directory\"\n- Users must manually resolve conflicts instead of getting automatic merge\n\n## Root Cause\n\nThe `bd init` command (or wherever the merge driver is configured) is using non-standard placeholders. When Git encounters `%L` and `%R`, it either passes them literally or interprets them incorrectly.\n\n## Fix\n\nUpdate the merge driver configuration to:\n```\ngit config merge.beads.driver \"bd merge %A %O %A %B\"\n```\n\nWhere:\n- 1st `%A` = output file (current file, will be overwritten)\n- `%O` = base (common ancestor)\n- 2nd `%A` = left/current version\n- `%B` = right/other version\n\n## Action Items\n\n1. Fix `bd init` (or equivalent setup command) to use correct placeholders\n2. Add migration/warning for existing users with misconfigured merge driver\n3. Update documentation with correct merge driver setup\n4. Consider adding validation when `bd init` is run","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-21T19:51:55.747608-05:00","updated_at":"2025-12-17T23:13:40.532368-08:00","closed_at":"2025-12-17T17:24:52.678668-08:00"} -{"id":"bd-89f89fc0","title":"Remove unreachable RPC methods","description":"Several RPC server and client methods are unreachable and should be removed:\n\nServer methods (internal/rpc/server.go):\n- `Server.GetLastImportTime` (line 2116)\n- `Server.SetLastImportTime` (line 2123)\n- `Server.findJSONLPath` (line 2255)\n\nClient methods (internal/rpc/client.go):\n- `Client.Import` (line 311) - RPC import not used (daemon uses autoimport)\n\nEvidence:\n```bash\ngo run golang.org/x/tools/cmd/deadcode@latest -test ./...\n```\n\nImpact: Removes ~80 LOC of unused RPC code","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-28T16:20:02.432202-07:00","updated_at":"2025-12-17T22:58:34.564401-08:00","closed_at":"2025-12-17T22:58:34.564401-08:00","close_reason":"Closed"} -{"id":"bd-8e0q","title":"Merge: beads-ocs","description":"branch: polecat/valkyrie\ntarget: main\nsource_issue: beads-ocs\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:24:45.281478-08:00","updated_at":"2025-12-19T23:24:45.281478-08:00"} -{"id":"bd-8fgn","title":"test hash length","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T13:49:32.113843-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-8g8","title":"Fix G304 potential file inclusion in cmd/bd/tips.go:259","description":"Linting issue: G304: Potential file inclusion via variable (gosec) at cmd/bd/tips.go:259:18. Error: if data, err := os.ReadFile(settingsPath); err == nil {","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:34:57.189730843-07:00","updated_at":"2025-12-17T23:13:40.534569-08:00","closed_at":"2025-12-17T16:46:11.029837-08:00"} -{"id":"bd-8hy","title":"Kill running daemons","description":"Stop all bd daemons before release:\n\n```bash\npkill -f 'bd.*daemon' || true\nsleep 1\npgrep -lf 'bd.*daemon' # Should show nothing\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:58.255478-08:00","updated_at":"2025-12-18T22:43:55.394966-08:00","closed_at":"2025-12-18T22:43:55.394966-08:00","dependencies":[{"issue_id":"bd-8hy","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.23168-08:00","created_by":"daemon"}]} -{"id":"bd-8pyn","title":"Version Bump: 0.30.7","description":"Release checklist for version 0.30.7. This molecule ensures all release steps are completed properly.","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-19T22:56:48.648694-08:00","updated_at":"2025-12-20T00:25:59.529183-08:00","closed_at":"2025-12-20T00:25:59.529183-08:00","close_reason":"Version 0.30.7 released successfully - all steps completed"} -{"id":"bd-8v2","title":"Add {{version}} to versionChanges in info.go","description":"Add new entry at TOP of versionChanges in cmd/bd/info.go with release notes from CHANGELOG.md. Must do before bump-version.sh --commit.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:00.482846-08:00","updated_at":"2025-12-18T22:45:21.465817-08:00","closed_at":"2025-12-18T22:45:21.465817-08:00","dependencies":[{"issue_id":"bd-8v2","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.496649-08:00","created_by":"daemon"},{"issue_id":"bd-8v2","depends_on_id":"bd-kyo","type":"blocks","created_at":"2025-12-18T22:43:20.69619-08:00","created_by":"daemon"}]} -{"id":"bd-90v","title":"bd prime: AI context loading and Claude Code integration","description":"Implement `bd prime` command and Claude Code hooks for context recovery. Hooks work with BOTH MCP server and CLI approaches - they solve the context memory problem (keeping bd workflow fresh after compaction) not the tool access problem (MCP vs CLI).","status":"open","priority":2,"issue_type":"epic","created_at":"2025-11-11T23:31:12.119012-08:00","updated_at":"2025-11-12T00:11:07.743189-08:00"} -{"id":"bd-95k8","title":"Pinned field available in beads v0.37.0","description":"Hey max,\n\nHeads up on your mail overhaul work:\n\n1. **Pinned field is available** - beads v0.37.0 (released by dave earlier) includes the pinned field on issues. You'll want to add this to BeadsMessage in types.go.\n\n2. **Database migration** - Check if existing .beads databases need migration to support the pinned field. Run `bd doctor` to see if it flags anything.\n\n3. **Sorting task** - Once you have the pinned field, gt-ngu1 (pinned beads first in mail inbox) needs implementing. Since messages now come from `bd list --type=message`, you'll need to either:\n - Sort in listBeads() after fetching, or\n - Ensure bd list returns pinned items first (may already do this?)\n\nCheck what version of bd you're building against.\n\n-- Mayor","status":"open","priority":2,"issue_type":"message","assignee":"gastown/crew/max","created_at":"2025-12-20T17:51:57.315956-08:00","updated_at":"2025-12-20T17:51:57.315956-08:00","labels":["from:beads-crew-dave","thread:thread-71ac20c7e432"]} -{"id":"bd-9cdc","title":"Update docs for import bug fix","description":"Update AGENTS.md, README.md, TROUBLESHOOTING.md with import.orphan_handling config documentation. Document resurrection behavior, tombstones, config modes. Add troubleshooting section for import failures with deleted parents.","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-04T12:32:30.770415-08:00","updated_at":"2025-11-04T12:32:30.770415-08:00"} -{"id":"bd-9g1z","title":"Fix or remove TestFindJSONLPathDefault (issue #356)","description":"Code health review found .test-skip permanently skips TestFindJSONLPathDefault.\n\nThe test references issue #356 about wrong JSONL filename expectations (issues.jsonl vs beads.jsonl).\n\nTest file: internal/beads/beads_test.go\n\nThe underlying migration from beads.jsonl to issues.jsonl may be complete, so either:\n1. Fix the test expectations\n2. Remove the test if no longer needed\n3. Document why it remains skipped","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-16T18:17:31.33975-08:00","updated_at":"2025-12-16T18:17:31.33975-08:00","dependencies":[{"issue_id":"bd-9g1z","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.169617-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-9usz","title":"Test suite hangs/never finishes","description":"Running 'go test ./... -count=1' hangs indefinitely. The full test suite never completes, making it difficult to verify changes. Need to investigate which tests are hanging and fix or add timeouts.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-16T21:56:27.80191-08:00","updated_at":"2025-12-16T21:56:27.80191-08:00"} -{"id":"bd-a0cp","title":"Consider using types.Status in merge package for type safety","description":"The merge package uses string for status comparison (e.g., result.Status == closed, issue.Status == StatusTombstone). The types package defines Status as a type alias with validation. While the merge package needs its own Issue struct for JSONL flexibility, it could import and use types.Status for constants to get compile-time type checking. Current code: if left == closed || right == closed. Could be: if left == string(types.StatusClosed). This is low priority since string comparison works correctly. Files: internal/merge/merge.go:44, 488, 501-521","status":"open","priority":4,"issue_type":"task","created_at":"2025-12-05T16:37:10.690424-08:00","updated_at":"2025-12-05T16:37:10.690424-08:00"} -{"id":"bd-a15d","title":"Add test files for internal/storage","description":"The internal/storage package has no test files at all. This package provides the storage interface abstraction.\n\nCurrent coverage: N/A (no test files)\nTarget: Add basic interface tests","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:11.363017-08:00","updated_at":"2025-12-13T21:01:20.925779-08:00"} -{"id":"bd-aay","title":"Warn on invalid depends_on references in workflow templates","description":"workflow.go:780-781 silently skips invalid dependency names. Should log a warning when a depends_on reference doesn't match any task ID in the template.","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T22:23:04.325253-08:00","updated_at":"2025-12-17T22:34:07.309495-08:00","closed_at":"2025-12-17T22:34:07.309495-08:00"} -{"id":"bd-abjw","title":"Consider consolidating config.yaml parsing into shared utility","description":"Multiple places parse config.yaml with custom structs:\n\n1. **autoimport.go:148** - `localConfig{SyncBranch}`\n2. **main.go:310** - strings.Contains for no-db (fragile, see bd-r6k2)\n3. **doctor.go:863** - strings.Contains for no-db (fragile, see bd-r6k2)\n4. **internal/config/config.go** - Uses viper (but caches at startup, problematic for tests)\n\nConsider creating a shared utility in `internal/configfile/` or extending the viper config:\n\n```go\n// internal/configfile/yaml.go\ntype YAMLConfig struct {\n SyncBranch string `yaml:\"sync-branch\"`\n NoDb bool `yaml:\"no-db\"`\n IssuePrefix string `yaml:\"issue-prefix\"`\n Author string `yaml:\"author\"`\n}\n\nfunc LoadYAML(beadsDir string) (*YAMLConfig, error) {\n // Parse config.yaml with proper YAML library\n}\n```\n\nBenefits:\n- Single source of truth for config.yaml structure\n- Proper YAML parsing everywhere\n- Easier to add new config fields\n\nTrade-off: May add complexity for simple one-off reads.","status":"open","priority":4,"issue_type":"task","created_at":"2025-12-07T02:03:26.067311-08:00","updated_at":"2025-12-07T02:03:26.067311-08:00"} -{"id":"bd-adoe","title":"Add --hard flag to bd cleanup to permanently cull tombstones before cutoff date","description":"Currently tombstones persist for 30 days before cleanup prunes them. Need an official way to force-cull tombstones earlier than the default TTL, for scenarios like cleaning house after extended absence where resurrection from old clones is not a concern. Proposed: bd cleanup --hard --older-than N to bypass the 30-day tombstone TTL.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:17:31.064914-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} -{"id":"bd-aec5439f","title":"Update LINTING.md with current baseline","description":"After cleanup, document the remaining acceptable baseline in LINTING.md so we can track regression.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-27T18:53:10.38679-07:00","updated_at":"2025-12-17T22:58:34.564854-08:00","closed_at":"2025-12-17T22:58:34.564854-08:00","close_reason":"Closed"} -{"id":"bd-ao0s","title":"bd graph crashes with --no-daemon on closed issues","description":"The `bd graph` command panics with nil pointer dereference when using `--no-daemon` flag on an issue with closed children.\n\n**Reproduction:**\n```bash\nbd graph bd-qqc --no-daemon\n# panic: runtime error: invalid memory address or nil pointer dereference\n# in main.computeDependencyCounts\n```\n\n**Stack trace:**\n```\npanic: runtime error: invalid memory address or nil pointer dereference\n[signal SIGSEGV: segmentation violation code=0x2 addr=0x20 pc=0x1010bdfb0]\n\ngoroutine 1 [running]:\nmain.computeDependencyCounts(...)\n /Users/stevey/gt/beads/crew/emma/cmd/bd/graph.go:428\nmain.renderGraph(0x1400033bb80, 0x0)\n /Users/stevey/gt/beads/crew/emma/cmd/bd/graph.go:307 +0x300\n```\n\n**Location:** cmd/bd/graph.go:428 - computeDependencyCounts() not handling nil case","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-18T22:57:36.972585-08:00","updated_at":"2025-12-20T18:12:46.798548-08:00","closed_at":"2025-12-20T18:12:46.798548-08:00","close_reason":"Already fixed in commit 3d8cf154"} -{"id":"bd-au0","title":"Command Set Standardization \u0026 Flag Consistency","description":"Comprehensive improvements to bd command set based on 2025 audit findings.\n\n## Background\nSee docs/command-audit-2025.md for detailed analysis.\n\n## Goals\n1. Standardize flag naming and behavior across all commands\n2. Add missing flags for feature parity\n3. Fix naming confusion\n4. Improve consistency in JSON output\n\n## Success Criteria\n- All mutating commands support --dry-run (no --preview variants)\n- bd update supports label operations\n- bd search has filter parity with bd list\n- Priority flags accept both int and P0-P4 format everywhere\n- JSON output is consistent across all commands","status":"open","priority":2,"issue_type":"epic","created_at":"2025-11-21T21:05:55.672749-05:00","updated_at":"2025-11-21T21:05:55.672749-05:00"} -{"id":"bd-au0.10","title":"Add global verbosity flags (--verbose, --quiet)","description":"Add consistent verbosity controls across all commands.\n\n**Current state:**\n- bd init has --quiet flag\n- No other commands have verbosity controls\n- Debug output controlled by BD_VERBOSE env var\n\n**Proposal:**\nAdd persistent flags:\n- --verbose / -v: Enable debug output\n- --quiet / -q: Suppress non-essential output\n\n**Implementation:**\n- Add to rootCmd.PersistentFlags()\n- Replace BD_VERBOSE checks with flag checks\n- Standardize output levels:\n * Quiet: Errors only\n * Normal: Errors + success messages\n * Verbose: Errors + success + debug info\n\n**Files to modify:**\n- cmd/bd/main.go (add flags)\n- internal/debug/debug.go (respect flags)\n- Update all commands to respect quiet mode\n\n**Testing:**\n- Verify --verbose shows debug output\n- Verify --quiet suppresses normal output\n- Ensure errors always show regardless of mode","status":"open","priority":3,"issue_type":"task","created_at":"2025-11-21T21:08:21.600209-05:00","updated_at":"2025-11-21T21:08:21.600209-05:00","dependencies":[{"issue_id":"bd-au0.10","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:08:21.602557-05:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-au0.5","title":"Add date and priority filters to bd search","description":"Add filter parity with bd list for consistent querying.\n\n**Missing filters to add:**\n- --priority, --priority-min, --priority-max\n- --created-after, --created-before\n- --updated-after, --updated-before\n- --closed-after, --closed-before\n- --empty-description, --no-assignee, --no-labels\n- --desc-contains, --notes-contains\n\n**Files to modify:**\n- cmd/bd/search.go\n- internal/rpc/protocol.go (SearchArgs)\n- internal/storage/storage.go (Search method)\n\n**Testing:**\n- All filter combinations\n- Date format parsing\n- Daemon and direct mode","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-21T21:07:05.496726-05:00","updated_at":"2025-11-21T21:07:05.496726-05:00","dependencies":[{"issue_id":"bd-au0.5","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:05.497762-05:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-au0.6","title":"Add comprehensive filters to bd export","description":"Enhance bd export with filtering options for selective exports.\n\n**Currently only has:**\n- --status\n\n**Add filters:**\n- --label, --label-any\n- --assignee\n- --type\n- --priority, --priority-min, --priority-max\n- --created-after, --created-before\n- --updated-after, --updated-before\n\n**Use case:**\n- Export only open issues: bd export --status open\n- Export high-priority bugs: bd export --type bug --priority-max 1\n- Export recent issues: bd export --created-after 2025-01-01\n\n**Files to modify:**\n- cmd/bd/export.go\n- Reuse filter logic from list.go","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-21T21:07:19.431307-05:00","updated_at":"2025-11-21T21:07:19.431307-05:00","dependencies":[{"issue_id":"bd-au0.6","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:19.432983-05:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-au0.7","title":"Audit and standardize JSON output across all commands","description":"Ensure consistent JSON format and error handling when --json flag is used.\n\n**Scope:**\n1. Verify all commands respect --json flag\n2. Standardize success response format\n3. Standardize error response format\n4. Document JSON schemas\n\n**Commands to audit:**\n- Core CRUD: create, update, delete, show, list, search āœ“\n- Queries: ready, blocked, stale, count, stats, status\n- Deps: dep add/remove/tree/cycles\n- Labels: label commands\n- Comments: comments add/list/delete\n- Epics: epic status/close-eligible\n- Export/import: already support --json āœ“\n\n**Testing:**\n- Success cases return valid JSON\n- Error cases return valid JSON (not plain text)\n- Consistent field naming (snake_case vs camelCase)\n- Array vs object wrapping consistency","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-21T21:07:35.304424-05:00","updated_at":"2025-11-21T21:07:35.304424-05:00","dependencies":[{"issue_id":"bd-au0.7","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:35.305663-05:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-au0.8","title":"Improve clean vs cleanup command naming/documentation","description":"Clarify the difference between bd clean and bd cleanup to reduce user confusion.\n\n**Current state:**\n- bd clean: Remove temporary artifacts (.beads/bd.sock, logs, etc.)\n- bd cleanup: Delete old closed issues from database\n\n**Options:**\n1. Rename for clarity:\n - bd clean ā†’ bd clean-temp\n - bd cleanup ā†’ bd cleanup-issues\n \n2. Keep names but improve help text and documentation\n\n3. Add prominent warnings in help output\n\n**Preferred approach:** Option 2 (improve documentation)\n- Update short/long descriptions in commands\n- Add examples to help text\n- Update README.md\n- Add cross-references in help output\n\n**Files to modify:**\n- cmd/bd/clean.go\n- cmd/bd/cleanup.go\n- README.md or ADVANCED.md","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-21T21:07:49.960534-05:00","updated_at":"2025-11-21T21:07:49.960534-05:00","dependencies":[{"issue_id":"bd-au0.8","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:49.962743-05:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-au0.9","title":"Review and document rarely-used commands","description":"Document use cases or consider deprecation for infrequently-used commands.\n\n**Commands to review:**\n1. bd rename-prefix - How often is this used? Document use cases\n2. bd detect-pollution - Consider integrating into bd validate\n3. bd migrate-hash-ids - One-time migration, keep but document as legacy\n\n**For each command:**\n- Document typical use cases\n- Add examples to help text\n- Consider if it should be a subcommand instead\n- Add deprecation warning if appropriate\n\n**Not changing:**\n- duplicates āœ“ (useful for data quality)\n- repair-deps āœ“ (useful for fixing broken refs)\n- restore āœ“ (critical for compacted issues)\n- compact āœ“ (performance feature)\n\n**Deliverable:**\n- Updated help text\n- Documentation in ADVANCED.md\n- Deprecation plan if needed","status":"open","priority":3,"issue_type":"task","created_at":"2025-11-21T21:08:05.588275-05:00","updated_at":"2025-11-21T21:08:05.588275-05:00","dependencies":[{"issue_id":"bd-au0.9","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:08:05.59003-05:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-aydr","title":"Add bd reset command for clean slate restart","description":"Implement a `bd reset` command to reset beads to a clean starting state.\n\n## Context\nGitHub issue #479 - users sometimes get beads into an invalid state after updates, and there's no clean way to start fresh. The git backup/restore mechanism that protects against accidental deletion also makes it hard to intentionally reset.\n\n## Design\n\n### Command Interface\n```\nbd reset [--hard] [--force] [--backup] [--dry-run] [--no-init]\n```\n\n| Flag | Effect |\n|------|--------|\n| `--hard` | Also remove from git index and commit |\n| `--force` | Skip confirmation prompt |\n| `--backup` | Create `.beads-backup-{timestamp}/` first |\n| `--dry-run` | Preview what would happen |\n| `--no-init` | Don't re-initialize after clearing |\n\n### Reset Levels\n1. **Soft Reset (default)** - Kill daemons, clear .beads/, re-init. Git history unchanged.\n2. **Hard Reset (`--hard`)** - Also git rm and commit the removal, then commit fresh state.\n\n### Implementation Flow\n1. Validate .beads/ exists\n2. If not --force: show impact summary, prompt confirmation\n3. If --backup: copy .beads/ to .beads-backup-{timestamp}/\n4. Kill daemons\n5. If --hard: git rm + commit\n6. rm -rf .beads/*\n7. If not --no-init: bd init (and git add+commit if --hard)\n8. Print summary\n\n### Safety Mechanisms\n- Confirmation prompt (skip with --force)\n- Impact summary (issue/tombstone counts)\n- Backup option\n- Dry-run preview\n- Git dirty check warning\n\n### Code Structure\n- `cmd/bd/reset.go` - CLI command\n- `internal/reset/` - Core logic package","status":"closed","priority":2,"issue_type":"epic","created_at":"2025-12-13T08:44:01.38379+11:00","updated_at":"2025-12-13T06:24:29.561294-08:00","closed_at":"2025-12-13T10:18:19.965287+11:00"} -{"id":"bd-aydr.1","title":"Implement core reset package (internal/reset)","description":"Create the core reset logic in internal/reset/ package.\n\n## Responsibilities\n- ResetOptions struct with all flag options\n- CountImpact() - count issues/tombstones that will be deleted\n- ValidateState() - check .beads/ exists, check git dirty state\n- ExecuteReset() - main reset logic (without CLI concerns)\n- Integrate with daemon killall\n\n## Interface Design\n```go\ntype ResetOptions struct {\n Hard bool // Include git operations (git rm, commit)\n Backup bool // Create backup before reset\n DryRun bool // Preview only, don't execute\n SkipInit bool // Don't re-initialize after reset\n}\n\ntype ResetResult struct {\n IssuesDeleted int\n TombstonesDeleted int\n BackupPath string // if backup was created\n DaemonsKilled int\n}\n\ntype ImpactSummary struct {\n IssueCount int\n OpenCount int\n ClosedCount int\n TombstoneCount int\n HasUncommitted bool // git dirty state\n}\n\nfunc Reset(opts ResetOptions) (*ResetResult, error)\nfunc CountImpact() (*ImpactSummary, error)\nfunc ValidateState() error\n```\n\n## IMPORTANT: CLI vs Core Separation\n- `Force` (skip confirmation) is NOT in ResetOptions - that's a CLI concern\n- Core always executes when called; CLI decides whether to prompt first\n- Keep CLI-agnostic: no prompts, no colored output, no user interaction\n- Return errors for CLI to handle with user-friendly messages\n- Unit testable in isolation\n\n## Dependencies\n- Uses daemon.KillAllDaemons() from internal/daemon/\n- Calls bd init logic after reset (unless SkipInit)","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:50.145364+11:00","updated_at":"2025-12-13T10:13:32.610253+11:00","closed_at":"2025-12-13T09:20:06.184893+11:00","dependencies":[{"issue_id":"bd-aydr.1","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:50.145775+11:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-aydr.2","title":"Implement backup functionality for reset","description":"Add backup capability that can be used by reset command.\n\n## Functionality\n- Copy .beads/ to .beads-backup-{timestamp}/\n- Timestamp format: YYYYMMDD-HHMMSS\n- Preserve file permissions\n- Return backup path for user feedback\n\n## Location\n`internal/reset/backup.go` - keep with reset package for now (YAGNI)\n\n## Interface\n```go\nfunc CreateBackup(beadsDir string) (backupPath string, err error)\n```\n\n## Notes\n- Simple recursive file copy, no compression needed\n- Error if backup dir already exists (unlikely with timestamp)\n- Backup directories SHOULD be gitignored\n- Add `.beads-backup-*/` pattern to .beads/.gitignore template in doctor package\n- Consider: ListBackups() for future `bd backup list` command (not for this PR)","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:51.306103+11:00","updated_at":"2025-12-13T10:13:32.610819+11:00","closed_at":"2025-12-13T09:20:20.590488+11:00","dependencies":[{"issue_id":"bd-aydr.2","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:51.306474+11:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-aydr.3","title":"Add git operations for --hard reset","description":"Implement git integration for hard reset mode.\n\n## Operations Needed\n1. `git rm -rf .beads/*.jsonl` - remove data files from index\n2. `git commit -m 'beads: reset to clean state'` - commit removal\n3. After re-init: `git add .beads/` and commit fresh state\n\n## Edge Cases to Handle\n- Uncommitted changes in .beads/ - warn or error\n- Detached HEAD state - warn, maybe block\n- Git not initialized - skip git ops, warn\n- Git operations fail mid-way - clear error messaging\n\n## Interface\n```go\ntype GitState struct {\n IsRepo bool\n IsDirty bool // uncommitted changes in .beads/\n IsDetached bool // detached HEAD\n Branch string // current branch name\n}\n\nfunc CheckGitState(beadsDir string) (*GitState, error)\nfunc GitRemoveBeads(beadsDir string) error\nfunc GitCommitReset(message string) error\nfunc GitAddAndCommit(beadsDir, message string) error\n```\n\n## Location\n`internal/reset/git.go` - keep with reset package for now\n\nNote: Codebase has no central git package. internal/compact/git.go is compact-specific.\nFuture refactoring could extract shared git utilities, but YAGNI for now.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:52.798312+11:00","updated_at":"2025-12-13T10:13:32.611131+11:00","closed_at":"2025-12-13T09:17:40.785927+11:00","dependencies":[{"issue_id":"bd-aydr.3","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:52.798715+11:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-aydr.4","title":"Implement CLI command (cmd/bd/reset.go)","description":"Wire up the reset command with Cobra CLI.\n\n## Responsibilities\n- Define command and all flags\n- User confirmation prompt (unless --force)\n- Display impact summary before confirmation\n- Colored output and progress indicators\n- Call core reset package\n- Handle errors with user-friendly messages\n- Register command with rootCmd in init()\n\n## Flags\n```go\n--hard bool \"Also remove from git and commit\"\n--force bool \"Skip confirmation prompt\"\n--backup bool \"Create backup before reset\"\n--dry-run bool \"Preview what would happen\"\n--skip-init bool \"Do not re-initialize after reset\"\n--verbose bool \"Show detailed progress output\"\n```\n\n## Output Format\n```\nāš ļø This will reset beads to a clean state.\n\nWill be deleted:\n ā€¢ 47 issues (23 open, 24 closed)\n ā€¢ 12 tombstones\n\nContinue? [y/N] y\n\nā†’ Stopping daemons... āœ“\nā†’ Removing .beads/... āœ“\nā†’ Initializing fresh... āœ“\n\nāœ“ Reset complete. Run 'bd onboard' to set up hooks.\n```\n\n## Implementation Notes\n- Confirmation logic lives HERE, not in core package\n- Use color package (github.com/fatih/color) for output\n- Follow patterns from other commands (init.go, doctor.go)\n- Add to rootCmd in init() function\n\n## File Location\n`cmd/bd/reset.go`","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:54.318854+11:00","updated_at":"2025-12-13T10:13:32.611434+11:00","closed_at":"2025-12-13T09:59:41.72638+11:00","dependencies":[{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:54.319237+11:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr.1","type":"blocks","created_at":"2025-12-13T08:45:09.762138+11:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr.2","type":"blocks","created_at":"2025-12-13T08:45:09.817854+11:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr.3","type":"blocks","created_at":"2025-12-13T08:45:09.883658+11:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-aydr.5","title":"Enhance bd doctor to suggest reset for broken states","description":"Update bd doctor to detect severely broken states and suggest reset.\n\n## Detection Criteria\nSuggest reset when:\n- Multiple unfixable errors detected\n- Corrupted JSONL that can't be repaired\n- Schema version mismatch that can't be migrated\n- Daemon state inconsistent and unkillable\n\n## Implementation\nAdd to doctor's check/fix flow:\n```go\nif unfixableErrors \u003e threshold {\n suggest('State may be too broken to fix. Consider: bd reset')\n}\n```\n\n## Output Example\n```\nāœ— Found 5 unfixable errors\n \n Your beads state may be too corrupted to repair.\n Consider running 'bd reset' to start fresh.\n (Use 'bd reset --backup' to save current state first)\n```\n\n## Notes\n- Don't auto-run reset, just suggest\n- This is lower priority, can be done in parallel with main work","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-13T08:44:55.591986+11:00","updated_at":"2025-12-13T06:24:29.561624-08:00","closed_at":"2025-12-13T10:17:23.4522+11:00","dependencies":[{"issue_id":"bd-aydr.5","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:55.59239+11:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-aydr.6","title":"Add unit tests for reset package","description":"Comprehensive unit tests for internal/reset package.\n\n## Test Cases\n\n### ValidateState tests\n- .beads/ exists ā†’ success\n- .beads/ missing ā†’ appropriate error\n- git dirty state detection\n\n### CountImpact tests \n- Empty .beads/ ā†’ zero counts\n- With issues ā†’ correct count (open vs closed)\n- With tombstones ā†’ correct count\n- Returns HasUncommitted correctly\n\n### Backup tests\n- Creates backup with correct timestamp format\n- Preserves all files and permissions\n- Returns correct path\n- Handles missing .beads/ gracefully\n- Errors on pre-existing backup dir\n\n### Git operation tests\n- CheckGitState detects dirty, detached, not-a-repo\n- GitRemoveBeads removes correct files\n- GitCommitReset creates commit with message\n- Operations skip gracefully when not in git repo\n\n### Reset tests (with mocks/temp dirs)\n- Soft reset removes files, calls init\n- Hard reset includes git operations\n- Dry run doesn't modify anything\n- SkipInit flag prevents re-initialization\n- Daemon killall is called\n- Backup is created when requested\n\n## Approach\n- Can start with interface definitions (TDD style)\n- Use testify for assertions\n- Create temp directories for isolation\n- Mock git operations where needed\n- Test completion depends on implementation tasks\n\n## File Location\n`internal/reset/reset_test.go`\n`internal/reset/backup_test.go`\n`internal/reset/git_test.go`","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:57.01739+11:00","updated_at":"2025-12-13T10:13:32.611698+11:00","closed_at":"2025-12-13T09:59:20.820314+11:00","dependencies":[{"issue_id":"bd-aydr.6","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:57.017813+11:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-aydr.7","title":"Add integration tests for bd reset command","description":"End-to-end integration tests for the reset command.\n\n## Test Scenarios\n\n### Basic reset\n1. Init beads, create some issues\n2. Run bd reset --force\n3. Verify .beads/ is fresh, issues gone\n\n### Hard reset\n1. Init beads, create issues, commit\n2. Run bd reset --hard --force \n3. Verify git history has reset commits\n\n### Backup functionality\n1. Init beads, create issues\n2. Run bd reset --backup --force\n3. Verify backup exists with correct contents\n4. Verify main .beads/ is reset\n\n### Dry run\n1. Init beads, create issues\n2. Run bd reset --dry-run\n3. Verify nothing changed\n\n### Confirmation prompt\n1. Init beads\n2. Run bd reset (no --force)\n3. Verify prompts for confirmation\n4. Test both y and n responses\n\n## Location\ntests/integration/reset_test.go or similar","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:58.479282+11:00","updated_at":"2025-12-13T06:24:29.561908-08:00","closed_at":"2025-12-13T10:15:59.221637+11:00","dependencies":[{"issue_id":"bd-aydr.7","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:58.479686+11:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-aydr.7","depends_on_id":"bd-aydr.4","type":"blocks","created_at":"2025-12-13T08:45:11.15972+11:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-aydr.8","title":"Respond to GitHub issue #479 with solution","description":"Once bd reset is implemented and released, respond to GitHub issue #479.\n\n## Response should include\n- Announce the new bd reset command\n- Show basic usage examples\n- Link to any documentation\n- Thank the user for the feedback\n\n## Example response\n```\nThanks for raising this! We've added a `bd reset` command to handle this case.\n\nUsage:\n- `bd reset` - Reset to clean state (prompts for confirmation)\n- `bd reset --backup` - Create backup first\n- `bd reset --hard` - Also clean up git history\n\nThis is available in version X.Y.Z.\n```\n\n## Notes\n- Wait until feature is merged and released\n- Consider if issue should be closed or left for user confirmation","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-13T08:45:00.112351+11:00","updated_at":"2025-12-13T06:24:29.562177-08:00","closed_at":"2025-12-13T10:18:06.646796+11:00","dependencies":[{"issue_id":"bd-aydr.8","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:45:00.112732+11:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-aydr.8","depends_on_id":"bd-aydr.7","type":"blocks","created_at":"2025-12-13T08:45:12.640243+11:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-aydr.9","title":"Add .beads-backup-* pattern to gitignore template","description":"Update the gitignore template in doctor package to include backup directories.\n\n## Change\nAdd `.beads-backup-*/` to the GitignoreTemplate in `cmd/bd/doctor/gitignore.go`\n\n## Why\nBackup directories created by `bd reset --backup` should not be committed to git.\nThey are local-only recovery tools.\n\n## File\n`cmd/bd/doctor/gitignore.go` - look for GitignoreTemplate constant","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-13T08:49:42.453483+11:00","updated_at":"2025-12-13T09:16:44.201889+11:00","closed_at":"2025-12-13T09:16:44.201889+11:00","dependencies":[{"issue_id":"bd-aydr.9","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:49:42.453886+11:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-b3og","title":"Fix TestImportBugIntegration deadlock in importer_test.go","description":"Code health review found internal/importer/importer_test.go has TestImportBugIntegration skipped with:\n\nTODO: Test hangs due to database deadlock - needs investigation\n\nThis indicates a potential unresolved concurrency issue in the importer. The test has been skipped for an unknown duration.\n\nFix: Investigate the deadlock, fix the underlying issue, and re-enable the test.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T18:17:22.103838-08:00","updated_at":"2025-12-17T23:13:40.529671-08:00","closed_at":"2025-12-17T17:25:26.645901-08:00","dependencies":[{"issue_id":"bd-b3og","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.740642-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-b6xo","title":"Remove or fix ClearDirtyIssues() - race condition risk (bd-52)","description":"Code health review found internal/storage/sqlite/dirty.go still exposes old ClearDirtyIssues() method (lines 103-108) which clears ALL dirty issues without checking what was actually exported.\n\nData loss risk: If export fails after some issues written to JSONL but before ClearDirtyIssues called, changes to remaining dirty issues will be lost.\n\nThe safer ClearDirtyIssuesByID() (lines 113-132) exists and clears only exported issues.\n\nFix: Either remove old method or mark it deprecated and ensure no code paths use it.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T18:17:20.534625-08:00","updated_at":"2025-12-17T23:13:40.530703-08:00","closed_at":"2025-12-17T18:59:18.693791-08:00","dependencies":[{"issue_id":"bd-b6xo","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.633738-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-bgm","title":"Fix unparam unused parameter in cmd/bd/doctor.go:1879","description":"Linting issue: checkGitHooks - path is unused (unparam) at cmd/bd/doctor.go:1879:20. Error: func checkGitHooks(path string) doctorCheck {","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:25.270293252-07:00","updated_at":"2025-12-17T23:13:40.532991-08:00","closed_at":"2025-12-17T16:46:11.026693-08:00"} -{"id":"bd-bgr","title":"Test stdin 2","description":"Description from stdin test\n","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T17:28:05.41434-08:00","updated_at":"2025-12-17T17:28:33.833288-08:00","closed_at":"2025-12-17T17:28:33.833288-08:00"} -{"id":"bd-bw6","title":"Fix G104 errors unhandled in internal/storage/sqlite/queries.go:1181","description":"Linting issue: G104: Errors unhandled (gosec) at internal/storage/sqlite/queries.go:1181:4. Error: rows.Close()","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:09.008444133-07:00","updated_at":"2025-12-17T23:13:40.536627-08:00","closed_at":"2025-12-17T16:46:11.029355-08:00"} -{"id":"bd-bwk2","title":"Centralize error handling patterns in storage layer","description":"80+ instances of inconsistent error handling across sqlite.go with mix of %w, %v, and no wrapping.\n\nLocation: internal/storage/sqlite/sqlite.go (throughout)\n\nProblem:\n- Some use fmt.Errorf(\"op failed: %w\", err) - correct wrapping\n- Some use fmt.Errorf(\"op failed: %v\", err) - loses error chain\n- Some return err directly - no context\n- Hard to debug production issues\n- Can't distinguish error types\n\nSolution: Create internal/storage/sqlite/errors.go:\n- Define sentinel errors (ErrNotFound, ErrInvalidID, etc.)\n- Create wrapDBError(op string, err error) helper\n- Convert sql.ErrNoRows to ErrNotFound\n- Always wrap with operation context\n\nImpact: Lost error context; inconsistent messages; hard to debug\n\nEffort: 5-7 hours","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-16T14:51:54.974909-08:00","updated_at":"2025-11-16T14:51:54.974909-08:00"} -{"id":"bd-bxha","title":"Default to YES for git hooks and merge driver installation","description":"Currently bd init prompts user to install git hooks and merge driver, but setup is incomplete if user declines. Change to install by default unless --skip-hooks or --skip-merge-driver flags are passed. Better safe defaults. If installation fails, warn user and suggest bd doctor --fix.","status":"open","priority":1,"issue_type":"feature","created_at":"2025-11-21T23:16:10.172238-08:00","updated_at":"2025-11-21T23:16:28.369137-08:00","dependencies":[{"issue_id":"bd-bxha","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:10.173034-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-by0d","title":"Work on beads-ldv: Fix bd graph crashes with nil pointer ...","description":"Work on beads-ldv: Fix bd graph crashes with nil pointer dereference (GH#657). Fix nil pointer in computeDependencyCounts at graph.go:428. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:27.829359-08:00","updated_at":"2025-12-20T00:26:12.607018-08:00","closed_at":"2025-12-19T23:20:49.038441-08:00"} -{"id":"bd-c2xs","title":"Exclude pinned issues from bd blocked","description":"Update bd blocked to exclude pinned issues. Pinned issues are context markers and should not appear in the blocked work list.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:44.684242-08:00","updated_at":"2025-12-18T23:33:44.684242-08:00","dependencies":[{"issue_id":"bd-c2xs","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.521323-08:00","created_by":"daemon"},{"issue_id":"bd-c2xs","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.736681-08:00","created_by":"daemon"}]} -{"id":"bd-c3u","title":"Review PR #512: clarify bd ready docs","description":"Review and merge PR #512 from aspiers. This PR clarifies what bd ready does after git pull in README.md. Simple 1-line change. URL: https://github.com/anthropics/beads/pull/512","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:15:13.405161+11:00","updated_at":"2025-12-13T07:07:29.641265-08:00","closed_at":"2025-12-13T07:07:29.641265-08:00"} -{"id":"bd-c83r","title":"Prevent multiple daemons from running on the same repo","description":"Multiple bd daemons running on the same repo clone causes race conditions and data corruption risks.\n\n**Problem:**\n- Nothing prevents spawning multiple daemons for the same repository\n- Multiple daemons watching the same files can conflict during sync operations\n- Observed: 4 daemons running simultaneously caused sync race condition\n\n**Solution:**\nImplement daemon singleton enforcement per repo:\n1. Use a lock file (e.g., .beads/.daemon.lock) with PID\n2. On daemon start, check if lock exists and process is alive\n3. If stale lock (dead PID), clean up and acquire lock\n4. If active daemon exists, either:\n - Exit with message 'daemon already running (PID xxx)'\n - Or offer --replace flag to kill existing and take over\n5. Release lock on graceful shutdown\n\n**Edge cases to handle:**\n- Daemon crashes without releasing lock (stale PID detection)\n- Multiple repos in same directory tree (each repo gets own lock)\n- Race between two daemons starting simultaneously (atomic lock acquisition)","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-13T06:37:23.377131-08:00","updated_at":"2025-12-16T01:14:49.50347-08:00","closed_at":"2025-12-14T17:34:14.990077-08:00"} -{"id":"bd-cb64c226.1","title":"Performance Validation","description":"Confirm no performance regression from cache removal","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T10:50:15.126019-07:00","updated_at":"2025-12-17T23:18:29.108883-08:00","close_reason":"Closed","deleted_at":"2025-12-17T23:18:29.108883-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-cb64c226.10","title":"Delete server_cache_storage.go","description":"Remove the entire cache implementation file (~286 lines)","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:38.729299-07:00","updated_at":"2025-12-17T23:18:29.110716-08:00","close_reason":"Closed","deleted_at":"2025-12-17T23:18:29.110716-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-cb64c226.12","title":"Remove Storage Cache from Server Struct","description":"Eliminate cache fields and use s.storage directly","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:25.474412-07:00","updated_at":"2025-12-17T23:18:29.111039-08:00","close_reason":"Closed","deleted_at":"2025-12-17T23:18:29.111039-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-cb64c226.13","title":"Audit Current Cache Usage","description":"**Summary:** Comprehensive audit of storage cache usage revealed minimal dependency across server components, with most calls following a consistent pattern. Investigation confirmed cache was largely unnecessary in single-repository daemon architecture.\n\n**Key Decisions:** \n- Remove all cache-related environment variables\n- Delete server struct cache management fields\n- Eliminate cache-specific test files\n- Deprecate req.Cwd routing logic\n\n**Resolution:** Cache system will be completely removed, simplifying server storage access and reducing unnecessary complexity with negligible performance impact.","notes":"AUDIT COMPLETE\n\ngetStorageForRequest() callers: 17 production + 11 test\n- server_issues_epics.go: 8 calls\n- server_labels_deps_comments.go: 4 calls \n- server_export_import_auto.go: 2 calls\n- server_compact.go: 2 calls\n- server_routing_validation_diagnostics.go: 1 call\n- server_eviction_test.go: 11 calls (DELETE entire file)\n\nPattern everywhere: store, err := s.getStorageForRequest(req) ā†’ store := s.storage\n\nreq.Cwd usage: Only for multi-repo routing. Local daemon always serves 1 repo, so routing is unused.\n\nMCP server: Uses separate daemons per repo (no req.Cwd usage found). NOT affected by cache removal.\n\nCache env vars to deprecate:\n- BEADS_DAEMON_MAX_CACHE_SIZE (used in server_core.go:63)\n- BEADS_DAEMON_CACHE_TTL (used in server_core.go:72)\n- BEADS_DAEMON_MEMORY_THRESHOLD_MB (used in server_cache_storage.go:47)\n\nServer struct fields to remove:\n- storageCache, cacheMu, maxCacheSize, cacheTTL, cleanupTicker, cacheHits, cacheMisses\n\nTests to delete:\n- server_eviction_test.go (entire file - 9 tests)\n- limits_test.go cache assertions\n\nSpecial consideration: ValidateDatabase endpoint uses findDatabaseForCwd() outside cache. Verify if used, then remove or inline.\n\nSafe to proceed with removal - cache always had 1 entry in local daemon model.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:19.3723-07:00","updated_at":"2025-12-17T23:18:29.111369-08:00","close_reason":"Closed","deleted_at":"2025-12-17T23:18:29.111369-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-cb64c226.6","title":"Verify MCP Server Compatibility","description":"Ensure MCP server works with cache-free daemon","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:56:03.241615-07:00","updated_at":"2025-12-17T23:18:29.109644-08:00","close_reason":"Closed","deleted_at":"2025-12-17T23:18:29.109644-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-cb64c226.8","title":"Update Metrics and Health Endpoints","description":"Remove cache-related metrics from health/metrics endpoints","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:49.212047-07:00","updated_at":"2025-12-17T23:18:29.110022-08:00","close_reason":"Closed","deleted_at":"2025-12-17T23:18:29.110022-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-cb64c226.9","title":"Remove Cache-Related Tests","description":"Delete or update tests that assume multi-repo caching","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:44.511897-07:00","updated_at":"2025-12-17T23:18:29.110385-08:00","close_reason":"Closed","deleted_at":"2025-12-17T23:18:29.110385-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-cbed9619.1","title":"Fix multi-round convergence for N-way collisions","description":"**Summary:** Multi-round collision resolution was identified as a critical issue preventing complete synchronization across distributed clones. The problem stemmed from incomplete final pulls that didn't fully propagate all changes between system instances.\n\n**Key Decisions:**\n- Implement multi-round sync mechanism\n- Ensure bounded convergence (ā‰¤N rounds)\n- Guarantee idempotent import without data loss\n\n**Resolution:** Developed a sync strategy that ensures all clones converge to the same complete set of issues, unblocking the bd-cbed9619 epic and improving distributed system reliability.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T21:22:21.486109-07:00","updated_at":"2025-12-17T23:18:29.111713-08:00","close_reason":"Closed","deleted_at":"2025-12-17T23:18:29.111713-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-cbed9619.2","title":"Implement content-first idempotent import","description":"**Summary:** Refactored issue import to be content-first and idempotent, ensuring consistent data synchronization across multiple import rounds by prioritizing content hash matching over ID-based updates.\n\n**Key Decisions:** \n- Implement content hash as primary matching mechanism\n- Create global collision resolution algorithm\n- Ensure importing same data multiple times results in no-op\n\n**Resolution:** The new import strategy guarantees predictable convergence across distributed systems, solving rename detection and collision handling while maintaining data integrity during multi-stage imports.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:38:25.671302-07:00","updated_at":"2025-12-17T23:18:29.112032-08:00","close_reason":"Closed","dependencies":[{"issue_id":"bd-cbed9619.2","depends_on_id":"bd-cbed9619.5","type":"blocks","created_at":"2025-10-28T18:39:28.360026-07:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-cbed9619.2","depends_on_id":"bd-cbed9619.4","type":"blocks","created_at":"2025-10-28T18:39:28.383624-07:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-cbed9619.2","depends_on_id":"bd-cbed9619.3","type":"blocks","created_at":"2025-10-28T18:39:28.407157-07:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-17T23:18:29.112032-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-cbed9619.3","title":"Implement global N-way collision resolution algorithm","description":"**Summary:** Replaced pairwise collision resolution with a global N-way algorithm that deterministically resolves issue ID conflicts across multiple clones. The new approach groups collisions, deduplicates by content hash, and assigns sequential IDs to ensure consistent synchronization.\n\n**Key Decisions:**\n- Use content hash for global, stable sorting\n- Group collisions by base ID\n- Assign sequential IDs based on sorted unique versions\n- Eliminate order-dependent remapping logic\n\n**Resolution:** Implemented ResolveNWayCollisions function that guarantees deterministic issue ID assignment across multiple synchronization scenarios, solving the core challenge of maintaining consistency in distributed systems with potential conflicts.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:37:42.85616-07:00","updated_at":"2025-12-17T23:18:29.112335-08:00","close_reason":"Closed","dependencies":[{"issue_id":"bd-cbed9619.3","depends_on_id":"bd-cbed9619.5","type":"blocks","created_at":"2025-10-28T18:39:28.30886-07:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-cbed9619.3","depends_on_id":"bd-cbed9619.4","type":"blocks","created_at":"2025-10-28T18:39:28.336312-07:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-17T23:18:29.112335-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-cbed9619.4","title":"Make DetectCollisions read-only (separate detection from modification)","description":"**Summary:** The project restructured the collision detection process in the database to separate read-only detection from state modification, eliminating race conditions and improving system reliability. This was achieved by introducing a two-phase approach: first detecting potential collisions, then applying resolution separately.\n\n**Key Decisions:**\n- Create read-only DetectCollisions method\n- Add RenameDetail to track potential issue renames\n- Implement atomic ApplyCollisionResolution function\n- Separate detection logic from database modification\n\n**Resolution:** The refactoring creates a more robust, composable collision handling mechanism that prevents partial failures and maintains database consistency during complex issue import scenarios.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:37:09.652326-07:00","updated_at":"2025-12-17T23:18:29.112637-08:00","close_reason":"Closed","dependencies":[{"issue_id":"bd-cbed9619.4","depends_on_id":"bd-cbed9619.5","type":"blocks","created_at":"2025-10-28T18:39:28.285653-07:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-17T23:18:29.112637-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-cbed9619.5","title":"Add content-addressable identity to Issue type","description":"**Summary:** Added content-addressable identity to Issue type by implementing a ContentHash field that generates a unique SHA256 fingerprint based on semantic issue content. This resolves issue identification challenges when multiple system instances create issues with identical IDs but different contents.\n\n**Key Decisions:**\n- Use SHA256 for content hashing\n- Hash excludes ID and timestamps\n- Compute hash automatically at creation/import time\n- Add database column for hash storage\n\n**Resolution:** Successfully implemented a deterministic content hashing mechanism that enables reliable issue identification across distributed systems, improving data integrity and collision detection.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:36:44.914967-07:00","updated_at":"2025-12-17T23:18:29.112933-08:00","close_reason":"Closed","deleted_at":"2025-12-17T23:18:29.112933-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-cils","title":"Work on beads-2nh: Fix gt spawn --issue to find issues in...","description":"Work on beads-2nh: Fix gt spawn --issue to find issues in rig's beads database. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:47.573854-08:00","updated_at":"2025-12-20T00:26:12.608015-08:00","closed_at":"2025-12-19T23:28:28.605343-08:00"} -{"id":"bd-crgr","title":"GH#517: Claude sets priority wrong on new install","description":"Claude uses 'medium/high/low' for priority instead of P0-P4. Update bd prime/onboard output to be clearer about priority syntax. See GitHub issue #517.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:34.803084-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-czss","title":"Update CHANGELOG.md with release notes","description":"Add meaningful release notes to CHANGELOG.md describing what changed in {{version}}","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:55:59.909641-08:00","updated_at":"2025-12-20T01:23:51.407302-08:00","closed_at":"2025-12-20T01:23:51.407302-08:00","close_reason":"Superseded by 0.30.7 release - CHANGELOG already updated","dependencies":[{"issue_id":"bd-czss","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:14.862724-08:00","created_by":"daemon"},{"issue_id":"bd-czss","depends_on_id":"bd-qkw9","type":"blocks","created_at":"2025-12-19T22:56:23.145894-08:00","created_by":"daemon"}]} -{"id":"bd-d148","title":"GH#483: Pre-commit hook fails unnecessarily when .beads removed","description":"Pre-commit hook fails on bd sync when .beads directory exists but user is on branch without beads. Should exit gracefully. See GitHub issue #483.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:40.049785-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-d3e5","title":"Test issue 2","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-14T11:21:13.878680387-07:00","updated_at":"2025-12-14T11:21:13.878680387-07:00","closed_at":"2025-12-14T00:32:13.890274-08:00"} -{"id":"bd-d73u","title":"Re: Thread Test 2","description":"Great! Thread is working well.","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:46.655093-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-d73u","depends_on_id":"bd-vpan","type":"replies-to","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} -{"id":"bd-de6","title":"Fix FindBeadsDir to prioritize main repo .beads for worktrees","description":"The FindBeadsDir function should prioritize finding .beads in the main repository root when accessed from a worktree, rather than finding worktree-local .beads directories. This ensures proper sharing of the database across all worktrees.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-07T16:48:36.883117467-07:00","updated_at":"2025-12-07T16:48:36.883117467-07:00"} -{"id":"bd-dhza","title":"Reduce global state in cmd/bd/main.go (25+ variables)","description":"Code health review found main.go has 25+ global variables (lines 57-112):\n\n- dbPath, actor, store, jsonOutput, daemonClient, noDaemon\n- rootCtx, rootCancel, autoFlushEnabled\n- isDirty (marked 'USED BY LEGACY CODE')\n- needsFullExport (marked 'USED BY LEGACY CODE')\n- flushTimer (marked 'DEPRECATED')\n- flushMutex, storeMutex, storeActive\n- flushFailureCount, lastFlushError, flushManager\n- skipFinalFlush, autoImportEnabled\n- versionUpgradeDetected, previousVersion, upgradeAcknowledged\n\nImpact:\n- Hard to test individual commands\n- Race conditions possible\n- State leakage between commands\n\nFix: Move toward dependency injection. Remove deprecated variables. Consider cmd/bd/internal package.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:29.643293-08:00","updated_at":"2025-12-16T18:17:29.643293-08:00","dependencies":[{"issue_id":"bd-dhza","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.492112-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-dp4w","title":"Test message","description":"This is a test message body","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:11:58.467876-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} -{"id":"bd-dqu8","title":"Restart running daemons","description":"Kill and restart any running bd daemons to pick up new version: pkill -f 'bd daemon' \u0026\u0026 bd daemon --start","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T00:32:26.559311-08:00","updated_at":"2025-12-20T00:32:59.123766-08:00","closed_at":"2025-12-20T00:32:59.123766-08:00","close_reason":"Daemons restarted - now running 0.30.7","dependencies":[{"issue_id":"bd-dqu8","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-20T00:32:39.36213-08:00","created_by":"daemon"},{"issue_id":"bd-dqu8","depends_on_id":"bd-fgw3","type":"blocks","created_at":"2025-12-20T00:32:39.427846-08:00","created_by":"daemon"}]} -{"id":"bd-dsdh","title":"Document sync.branch 'always dirty' working tree behavior","description":"## Context\n\nWhen sync.branch is configured, the .beads/issues.jsonl file in main's working tree is ALWAYS dirty. This is by design:\n\n1. bd sync commits to beads-sync branch (via worktree)\n2. bd sync copies JSONL to main's working tree (so CLI commands work)\n3. This copy is NOT committed to main (to reduce commit noise)\n\nContributors who watch main branch history pushed for sync.branch to avoid constant beads commit noise. But users need to understand the trade-off.\n\n## Documentation Needed\n\nUpdate README.md sync.branch section with:\n\n1. **Clear explanation** of why .beads/ is always dirty on main\n2. **\"Be Zen about it\"** - this is expected, not a bug\n3. **Workflow options:**\n - Accept dirty state, use `bd sync --merge` periodically to snapshot to main\n - Or disable sync.branch if clean working tree is more important\n4. **Shell alias tip** to hide beads from git status:\n ```bash\n alias gs='git status -- \":!.beads/\"'\n ```\n5. **When to merge**: releases, milestones, or periodic snapshots\n\n## Related\n\n- bd-7b7h: Fix that allows bd sync --merge to work with dirty .beads/\n- bd-elqd: Investigation that identified this as expected behavior","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T23:16:12.253559-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-dsp","title":"Test stdin body-file","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T17:27:32.098806-08:00","updated_at":"2025-12-17T17:28:33.832749-08:00","closed_at":"2025-12-17T17:28:33.832749-08:00"} -{"id":"bd-dwh","title":"Implement or remove ExpectExit/ExpectStdout verification fields","description":"The Verification struct in internal/types/workflow.go has ExpectExit and ExpectStdout fields that are never used by workflowVerifyCmd. Either implement the functionality or remove the dead fields.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-17T22:23:02.708627-08:00","updated_at":"2025-12-17T22:34:07.300348-08:00","closed_at":"2025-12-17T22:34:07.300348-08:00"} -{"id":"bd-dyy","title":"Review PR #513: fix hooks install docs","description":"Review and merge PR #513 from aspiers. This PR fixes incorrect docs for how to install git hooks - updates README to use bd hooks install instead of removed install.sh. Simple 1-line change. URL: https://github.com/anthropics/beads/pull/513","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:15:14.838772+11:00","updated_at":"2025-12-13T07:07:19.718544-08:00","closed_at":"2025-12-13T07:07:19.718544-08:00"} -{"id":"bd-e1085716","title":"bd validate - Comprehensive health check","description":"Run all validation checks in one command.\n\nChecks:\n- Duplicates\n- Orphaned dependencies\n- Test pollution\n- Git conflicts\n\nSupports --fix-all for auto-repair.\n\nDepends on bd-cbed9619.1, bd-0dcea000, bd-31aab707, bd-9826b69a.\n\nFiles: cmd/bd/validate.go (new)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-10-29T23:05:13.980679-07:00","updated_at":"2025-12-17T22:58:34.562008-08:00","closed_at":"2025-12-17T22:58:34.562008-08:00","close_reason":"Closed"} -{"id":"bd-elqd","title":"Systematic bd sync stability investigation","description":"## Context\n\nbd sync has chronic instability issues that have persisted since inception:\n- issues.jsonl is always dirty after push\n- bd sync often creates messes requiring manual cleanup\n- Problems escalating despite accumulated bug fixes\n- Workarounds are getting increasingly draconian\n\n## Goal\n\nSystematically observe and diagnose bd sync failures rather than applying band-aid fixes.\n\n## Approach\n\n1. Start fresh session with latest binary (all fixes applied)\n2. Run bd sync and carefully observe what happens\n3. Document exact sequence of events when things go wrong\n4. File specific issues for each discrete problem identified\n5. Track the root causes, not just symptoms\n\n## Test Environment\n\n- Fresh clone or clean state\n- Latest bd binary with all bug fixes\n- Monitor both local and remote JSONL state\n- Check for timing issues, race conditions, merge conflicts\n\n## Success Criteria\n\n- Identify root causes of sync instability\n- Create actionable issues for each problem\n- Eventually achieve stable bd sync (no manual intervention needed)","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T22:57:25.35289-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-eyrh","title":"šŸ¤ HANDOFF: Review remaining beads PRs","description":"## Current State\nJust merged PR #653 (doctor refactor) and added tests to restore coverage.\n\n## Remaining Open PRs to Review\nRun `gh pr list --repo steveyegge/beads` to see current list. As of handoff:\n\n1. #655 - feat: Linear Integration (jblwilliams)\n2. #651 - feat(audit): agent audit trail (dchichkov)\n3. #648 - Stop init creating redundant @AGENTS.md (maphew)\n4. #646 - fix(unix): handle Statfs field types (jordanhubbard)\n5. #645 - feat: /plan-to-beads Claude Code command (petebytes)\n6. #642, #641, #640 - sync branch fixes (cpdata)\n\n## Review Checklist\n- Check CI status with `gh pr checks \u003cnum\u003e --repo steveyegge/beads`\n- Verify no .beads/ data leaking (we have a hook now)\n- Review code quality\n- Merge good ones, request changes on problematic ones\n\n## Notes\n- User wants us to be proactive about merging good PRs\n- Can add tests ourselves if coverage drops","status":"closed","priority":2,"issue_type":"message","created_at":"2025-12-19T17:44:34.149837-08:00","updated_at":"2025-12-19T23:20:44.79446-08:00","closed_at":"2025-12-19T17:53:20.386937-08:00","sender":"Steve Yegge","ephemeral":true} -{"id":"bd-eyto","title":"Time-dependent tests may be flaky near TTL boundary","description":"Several tombstone merge tests use time.Now() to create test data: time.Now().Add(-24 * time.Hour), time.Now().Add(-60 * 24 * time.Hour), etc. While these work reliably in practice (24h vs 30d TTL has large margin), they could theoretically be flaky if: 1) Tests run slowly, 2) System clock changes during test, 3) TTL constants change. Recommendation: Consider using a fixed reference time or time injection for deterministic tests. Lower priority since current margin is large. Files: internal/merge/merge_test.go:1337-1338, 1352-1353, 1548-1549, 1590-1591","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-05T16:37:02.348143-08:00","updated_at":"2025-12-05T16:37:02.348143-08:00"} -{"id":"bd-f3ll","title":"Merge: bd-ot0w","description":"branch: polecat/dementus\ntarget: main\nsource_issue: bd-ot0w\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:20:33.495772-08:00","updated_at":"2025-12-19T23:20:33.495772-08:00"} -{"id":"bd-f5cc","title":"Thread Test","description":"Testing the thread feature","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:01.244501-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-f5cc","depends_on_id":"bd-x36g","type":"supersedes","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} -{"id":"bd-fa2h","title":"šŸ¤ HANDOFF: v0.31.0 released, molecules discussion","description":"Session completed 0.31.0 release and had important molecules discussion.\n\n## Completed\n- v0.31.0 released (deferred status, audit trail, directory labels, etc.)\n- Fixed lint issues, hook version markers, codesigning\n- All CI green, artifacts verified\n\n## Filed Issues\n- bd-usro: Rename template instantiate ā†’ bd mol bond\n- bd-y8bj: Auto-detect identity for bd mail (P1 bug)\n- gt-975: Molecule execution support for polecats/crew\n- gt-976: Crew lifecycle support in Deacon\n\n## Key Insight\nMolecules are the future - TodoWrite is ephemeral, molecules are persistent institutional memory on the world chain. I tried to use TodoWrite for version bump and missed steps (codesigning, MCP verification). Molecules would have caught this.\n\n## Next Steps\n- bd mol bond implementation is priority\n- Max has gt-976 for crew lifecycle (enables automated refresh mid-molecule)\n\nCheck bd ready and gt-975/976 status.","status":"open","priority":2,"issue_type":"message","assignee":"beads/crew/dave","created_at":"2025-12-20T17:23:09.889562-08:00","updated_at":"2025-12-20T17:23:09.889562-08:00","sender":"Steve Yegge","ephemeral":true} -{"id":"bd-fgw3","title":"Update local installation","description":"Run install script or brew upgrade to get new version locally: curl -fsSL .../install.sh | bash","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:05.052016-08:00","updated_at":"2025-12-20T00:25:52.805029-08:00","closed_at":"2025-12-20T00:25:52.805029-08:00","close_reason":"Local bd updated to 0.30.7","dependencies":[{"issue_id":"bd-fgw3","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.248427-08:00","created_by":"daemon"},{"issue_id":"bd-fgw3","depends_on_id":"bd-si4g","type":"blocks","created_at":"2025-12-19T22:56:23.497325-08:00","created_by":"daemon"}]} -{"id":"bd-fi05","title":"bd sync fails with orphaned issues and duplicate ID conflict","description":"After fixing the deleted_at TEXT column scanning bug (commit 18b1eb2), bd sync still fails with two issues:\n\n1. Orphan Detection Warning: 12 orphaned child issues whose parents no longer exist (bd-cb64c226.* and bd-cbed9619.*)\n\n2. Import Failure: UNIQUE constraint failed for bd-360 - this tombstone exists in both DB and JSONL\n\nError: \"Import failed: error creating depth-0 issues: bulk insert issues: failed to insert issue bd-360: sqlite3: constraint failed: UNIQUE constraint failed: issues.id\"\n\nFix options:\n- Delete orphaned child issues with bd delete\n- Resolve bd-360 duplicate (in deletions.jsonl vs tombstone in DB)\n- Reset sync branch: git branch -f beads-sync main \u0026\u0026 git push --force-with-lease origin beads-sync","notes":"Fixed tombstone constraint violation bug. When deleting closed issues, the CHECK constraint (status = 'closed') = (closed_at IS NOT NULL) was violated because CreateTombstone didn't clear closed_at. Fix: set closed_at = NULL in tombstone creation SQL.\n\nThe sync data corruption (orphaned issues in beads-sync branch) requires manual cleanup: reset sync branch with 'git branch -f beads-sync main \u0026\u0026 git push --force-with-lease origin beads-sync'","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-13T07:14:33.831346-08:00","updated_at":"2025-12-13T10:50:48.545465-08:00","closed_at":"2025-12-13T07:30:33.843986-08:00"} -{"id":"bd-fom","title":"Remove all deletions.jsonl code except migration","description":"There's deletions manifest code spread across the entire codebase that should have been removed after tombstone migration:\n\nFiles with deletions code (non-migration):\n- internal/deletions/ - entire package\n- cmd/bd/sync.go - 25+ references, auto-compact, sanitize\n- cmd/bd/delete.go - dual-writes to deletions.jsonl\n- internal/importer/importer.go - checks deletions manifest\n- internal/syncbranch/worktree.go - merges deletions.jsonl\n- cmd/bd/doctor/fix/sync.go - cleanupDeletionsManifest\n- cmd/bd/doctor/fix/deletions.go - HydrateDeletionsManifest\n- cmd/bd/integrity.go - checks deletions for data loss\n- cmd/bd/deleted.go - entire command\n- cmd/bd/compact.go - pruneDeletionsManifest\n- cmd/bd/doctor.go - checkDeletionsManifest\n- Plus many more\n\nAction: Aggressively remove all non-migration deletions code. Tombstones are the only deletion mechanism now.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T13:29:04.960863-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-b6xo","title":"Remove or fix ClearDirtyIssues() - race condition risk (bd-52)","description":"Code health review found internal/storage/sqlite/dirty.go still exposes old ClearDirtyIssues() method (lines 103-108) which clears ALL dirty issues without checking what was actually exported.\n\nData loss risk: If export fails after some issues written to JSONL but before ClearDirtyIssues called, changes to remaining dirty issues will be lost.\n\nThe safer ClearDirtyIssuesByID() (lines 113-132) exists and clears only exported issues.\n\nFix: Either remove old method or mark it deprecated and ensure no code paths use it.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T18:17:20.534625-08:00","updated_at":"2025-12-17T23:13:40.530703-08:00","closed_at":"2025-12-17T18:59:18.693791-08:00","dependencies":[{"issue_id":"bd-b6xo","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.633738-08:00","created_by":"daemon"}]} {"id":"bd-fu83","title":"Fix daemon/direct mode inconsistency in relate and duplicate commands","description":"The relate.go and duplicate.go commands have inconsistent daemon/direct mode handling:\n\nWhen daemonClient is connected, they resolve IDs via RPC but then perform updates directly via store.UpdateIssue(), bypassing the daemon.\n\nAffected locations:\n- relate.go:125-139 (runRelate update)\n- relate.go:235-246 (runUnrelate update) \n- duplicate.go:120 (runDuplicate update)\n- duplicate.go:207 (runSupersede update)\n\nShould either use RPC for updates when daemon is running, or document why direct access is intentional.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-16T20:52:54.164189-08:00","updated_at":"2025-12-16T20:52:54.164189-08:00"} -{"id":"bd-fx7v","title":"Improve test coverage for cmd/bd/doctor/fix (23.9% ā†’ 50%)","description":"The doctor/fix package has only 23.9% test coverage. The doctor fix functionality is important for troubleshooting.\n\nCurrent coverage: 23.9%\nTarget coverage: 50%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:05.67127-08:00","updated_at":"2025-12-13T21:01:20.839298-08:00"} -{"id":"bd-g9eu","title":"Investigate TestRoutingIntegration failure","description":"TestRoutingIntegration/maintainer_with_SSH_remote failed during pre-commit check with \"expected role maintainer, got contributor\".\nThis occurred while running `go test -short ./...` on darwin/arm64.\nThe failure appears unrelated to storage/sqlite changes.\nNeed to investigate if this is a flaky test or environmental issue.","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-20T15:55:19.337094-08:00","updated_at":"2025-11-20T15:55:19.337094-08:00"} -{"id":"bd-gjla","title":"Test Thread","description":"Initial message for threading test","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:19:51.704324-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-gjla","depends_on_id":"bd-f5cc","type":"duplicates","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} -{"id":"bd-gxq","title":"Simplify bd onboard to minimal AGENTS.md snippet pointing to bd prime","description":"## Context\nGH#604 raised concerns about bd onboard bloating AGENTS.md with ~100+ lines of static instructions that:\n- Load every session whether beads is being used or not\n- Get stale when bd upgrades\n- Waste tokens\n\n## Solution\nSimplify `bd onboard` to output a minimal snippet (~2 lines) that points to `bd prime`:\n\n```markdown\n## Issue Tracking\nThis project uses beads (`bd`) for issue tracking.\nRun `bd prime` for workflow context, or hooks auto-inject it.\n```\n\n## Rationale\n- `bd prime` is dynamic, concise (~80 lines), and always matches installed bd version\n- Hooks already auto-inject `bd prime` at session start when .beads/ detected\n- AGENTS.md only needs to mention beads exists, not contain full instructions\n\n## Implementation\n1. Update `cmd/bd/onboard.go` to output minimal snippet\n2. Keep `--output` flag for BD_GUIDE.md generation (may still be useful)\n3. Update help text to explain the new approach","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T11:42:38.604891-08:00","updated_at":"2025-12-18T11:47:28.020419-08:00","closed_at":"2025-12-18T11:47:28.020419-08:00","close_reason":"Implemented: bd onboard now outputs minimal snippet pointing to bd prime"} -{"id":"bd-haze","title":"Fix beads-9yc: pinned column missing from schema. gt mail...","description":"Fix beads-9yc: pinned column missing from schema. gt mail send fails because some beads DBs lack the pinned column. Add migration to ensure it exists.","status":"in_progress","priority":2,"issue_type":"task","created_at":"2025-12-19T15:05:33.394801-08:00","updated_at":"2025-12-19T15:05:33.524491-08:00"} -{"id":"bd-hkr6","title":"GH#518: Document bd setup command","description":"bd setup is undiscoverable. Add to README/docs. Currently only findable by grepping source. See GitHub issue #518.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:54.664668-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-hlsw","title":"Add sync resilience guardrails for forced pushes and prefix mismatches","description":"Beads can get into unrecoverable sync states when remote forces pushes occur (e.g., rebases) combined with prefix mismatches from multi-worker scenarios. Add detection, prevention, and auto-recovery features to handle this gracefully.","status":"open","priority":2,"issue_type":"epic","created_at":"2025-12-14T10:40:14.872875259-07:00","updated_at":"2025-12-14T10:40:14.872875259-07:00"} -{"id":"bd-hlsw.3","title":"Auto-recovery mode (bd sync --auto-recover)","description":"Add bd sync --auto-recover flag that: detects problematic sync state, backs up .beads/issues.db with timestamp, rebuilds DB from JSONL atomically, verifies consistency, reports what was fixed. Provides safety valve when sync integrity fails.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-14T10:40:20.599836875-07:00","updated_at":"2025-12-14T10:40:20.599836875-07:00","dependencies":[{"issue_id":"bd-hlsw.3","depends_on_id":"bd-hlsw","type":"parent-child","created_at":"2025-12-14T10:40:20.600435888-07:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-hlsw.4","title":"Sync branch integrity guards","description":"Track sync branch parent commit. If sync branch was force-pushed, warn user and require confirmation before proceeding. Add option to reset to remote if user accepts rebase. Prevents silent corruption from forced pushes.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-14T10:40:20.645402352-07:00","updated_at":"2025-12-14T10:40:20.645402352-07:00","dependencies":[{"issue_id":"bd-hlsw.4","depends_on_id":"bd-hlsw","type":"parent-child","created_at":"2025-12-14T10:40:20.646425761-07:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-hnkg","title":"GH#540: Add silent quick-capture mode (bd q)","description":"Add bd q alias for quick capture that outputs only issue ID. Useful for piping/scripting. See GitHub issue #540.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:03:38.260135-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} -{"id":"bd-hvng","title":"Merge: bd-w193","description":"branch: polecat/nux\ntarget: main\nsource_issue: bd-w193\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:23:47.496139-08:00","updated_at":"2025-12-19T23:23:47.496139-08:00"} -{"id":"bd-hw3w","title":"Update info.go versionChanges","description":"Add entry to versionChanges in cmd/bd/info.go with agent-actionable changes for {{version}}","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:01.016558-08:00","updated_at":"2025-12-20T01:23:50.3879-08:00","closed_at":"2025-12-20T01:23:50.3879-08:00","close_reason":"Superseded by bd-hzvz (actual 0.30.7 release)","dependencies":[{"issue_id":"bd-hw3w","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:14.941855-08:00","created_by":"daemon"},{"issue_id":"bd-hw3w","depends_on_id":"bd-czss","type":"blocks","created_at":"2025-12-19T22:56:23.219257-08:00","created_by":"daemon"}]} -{"id":"bd-hy9p","title":"Add --body-file flag to bd create for reading descriptions from files","description":"## Problem\n\nCreating issues with long/complex descriptions via CLI requires shell escaping gymnastics:\n\n```bash\n# Current workaround - awkward heredoc quoting\nbd create --title=\"...\" --description=\"$(cat \u003c\u003c'EOF'\n...markdown...\nEOF\n)\"\n\n# Often fails with quote escaping errors in eval context\n# Agents resort to writing temp files then reading them\n```\n\n## Proposed Solution\n\nAdd `--body-file` and `--description-file` flags to read description from a file, matching `gh` CLI pattern.\n\n```bash\n# Natural pattern that aligns with training data\ncat \u003e /tmp/desc.md \u003c\u003c 'EOF'\n...markdown content...\nEOF\n\nbd create --title=\"...\" --body-file=/tmp/desc.md\n```\n\n## Implementation\n\n### 1. Add new flags to `bd create`\n\n```go\ncreateCmd.Flags().String(\"body-file\", \"\", \"Read description from file (use - for stdin)\")\ncreateCmd.Flags().String(\"description-file\", \"\", \"Alias for --body-file\")\n```\n\n### 2. Flag precedence\n\n- If `--body-file` or `--description-file` is provided, read from file\n- If value is `-`, read from stdin\n- Otherwise fall back to `--body` or `--description` flag\n- If neither provided, description is empty (current behavior)\n\n### 3. Error handling\n\n- File doesn't exist ā†’ clear error message\n- File not readable ā†’ clear error message\n- stdin specified but not available ā†’ clear error message\n\n## Benefits\n\nāœ… **Matches training data**: `gh issue create --body-file file.txt` is a common pattern\nāœ… **No shell escaping issues**: File content is read directly\nāœ… **Works with any content**: Markdown, special characters, quotes, etc.\nāœ… **Agent-friendly**: Agents already write complex content to temp files\nāœ… **User-friendly**: Easier for humans too when pasting long descriptions\n\n## Related Commands\n\nConsider adding similar support to:\n- `bd update --body-file` (for updating descriptions)\n- `bd comment --body-file` (if/when we add comments)\n\n## Examples\n\n```bash\n# From file\nbd create --title=\"Add new feature\" --body-file=feature.md\n\n# From stdin\necho \"Quick description\" | bd create --title=\"Bug fix\" --body-file=-\n\n# With other flags\nbd create \\\n --title=\"Security issue\" \\\n --type=bug \\\n --priority=0 \\\n --body-file=security-report.md \\\n --label=security\n```\n\n## Testing\n\n- Test with normal files\n- Test with stdin (`-`)\n- Test with non-existent files (error handling)\n- Test with binary files (should handle gracefully)\n- Test with empty files (valid - empty description)\n- Test that `--description-file` and `--body-file` are equivalent aliases","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-11-22T00:02:08.762684-08:00","updated_at":"2025-12-17T23:13:40.536024-08:00","closed_at":"2025-12-17T17:28:52.505239-08:00"} -{"id":"bd-hzvz","title":"Update info.go versionChanges","description":"Add entry to versionChanges in cmd/bd/info.go with agent-actionable changes for 0.30.7","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649359-08:00","updated_at":"2025-12-19T22:57:31.604229-08:00","closed_at":"2025-12-19T22:57:31.604229-08:00","close_reason":"Updated info.go versionChanges","dependencies":[{"issue_id":"bd-hzvz","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.652068-08:00","created_by":"stevey"},{"issue_id":"bd-hzvz","depends_on_id":"bd-2ep8","type":"blocks","created_at":"2025-12-19T22:56:48.652376-08:00","created_by":"stevey"}]} -{"id":"bd-in7","title":"Test message","description":"Hello world","status":"closed","priority":2,"issue_type":"message","created_at":"2025-12-17T23:16:13.184946-08:00","updated_at":"2025-12-18T17:42:26.000073-08:00","closed_at":"2025-12-17T23:37:38.563369-08:00"} -{"id":"bd-indn","title":"bd template commands fail with daemon mode","description":"The `bd template show` and `bd template instantiate` commands fail with 'Error loading template: no database connection' when daemon is running.\n\n**Reproduction:**\n```bash\nbd daemon --start\nbd template show bd-qqc # Error: no database connection\nbd template show bd-qqc --no-daemon # Works\n```\n\n**Expected:** Template commands should work with daemon like other commands.\n\n**Workaround:** Use `--no-daemon` flag.\n\n**Location:** Likely in cmd/bd/template.go - daemon RPC path not implemented for template operations.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-18T22:57:35.16596-08:00","updated_at":"2025-12-18T22:57:35.16596-08:00"} -{"id":"bd-io8c","title":"Improve test coverage for internal/syncbranch (33.0% ā†’ 70%)","description":"The syncbranch package has only 33.0% test coverage. This package handles git sync operations and is critical for data integrity.\n\nCurrent coverage: 33.0%\nTarget coverage: 70%","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-13T20:43:02.079145-08:00","updated_at":"2025-12-13T21:01:14.972533-08:00"} -{"id":"bd-iq7n","title":"Audit and fix JSONL filename mismatches across all repo clones","description":"## Problem\n\nMultiple clones of repos are configured with different JSONL filenames (issues.jsonl vs beads.jsonl), causing:\n1. JSONL files to be resurrected after deletion (one clone pushes issues.jsonl, another pushes beads.jsonl)\n2. Agents unable to see issues filed by other agents after sync\n3. Merge conflicts and data inconsistencies\n\n## Root Cause\n\nWhen repos were \"bd doctored\" or initialized at different times, some got issues.jsonl (old default) and others got beads.jsonl (Beads repo specific). These clones push their respective files, creating duplicates.\n\n## Task\n\nScan all repo clones under ~/src/ (1-2 levels deep) and standardize their JSONL configuration.\n\n### Step 1: Find all beads-enabled repos\n\n```bash\n# Find all directories named 'beads' at levels 1-2 under ~/src/\nfind ~/src -maxdepth 2 -type d -name beads\n```\n\n### Step 2: For each repo found, check configuration\n\nFor each directory from Step 1, check:\n- Does `.beads/metadata.json` exist?\n- What is the `jsonl_export` value?\n- What JSONL files actually exist in `.beads/`?\n- Are there multiple JSONL files (problem!)?\n\n### Step 3: Create audit report\n\nGenerate a report showing:\n```\nRepo Path | Config | Actual Files | Status\n----------------------------------- | ------------- | ---------------------- | --------\n~/src/beads | beads.jsonl | beads.jsonl | OK\n~/src/dave/beads | issues.jsonl | issues.jsonl | MISMATCH\n~/src/emma/beads | issues.jsonl | issues.jsonl, beads.jsonl | DUPLICATE!\n```\n\n### Step 4: Determine canonical name for each repo\n\nFor repos that are the SAME git repository (check `git remote -v`):\n- Group them together\n- Determine which JSONL filename should be canonical (majority wins, or beads.jsonl for the beads repo itself)\n- List which clones need to be updated\n\n### Step 5: Generate fix script\n\nCreate a script that for each mismatched clone:\n1. Updates `.beads/metadata.json` to use the canonical name\n2. If JSONL file needs renaming: `git mv .beads/old.jsonl .beads/new.jsonl`\n3. Removes any duplicate JSONL files: `git rm .beads/duplicate.jsonl`\n4. Commits the change\n5. Syncs: `bd sync`\n\n### Expected Output\n\n1. Audit report showing all repos and their config status\n2. List of repos grouped by git remote (same repository)\n3. Fix script or manual instructions for standardizing each repo\n4. Verification that after fixes, all clones of the same repo use the same JSONL filename\n\n### Edge Cases\n\n- Handle repos without metadata.json (use default discovery)\n- Handle repos with no git remote (standalone/local)\n- Handle repos that are not git repositories\n- Don't modify repos with uncommitted changes (warn instead)\n\n### Success Criteria\n\n- All clones of the same git repository use the same JSONL filename\n- No duplicate JSONL files in any repo\n- All configurations documented in metadata.json\n- bd doctor passes on all repos","status":"closed","issue_type":"task","created_at":"2025-11-21T23:58:35.044762-08:00","updated_at":"2025-12-17T23:13:40.531403-08:00","closed_at":"2025-12-17T16:50:59.510972-08:00"} -{"id":"bd-j3il","title":"Add bd reset command for clean slate restart","description":"Implement a command to reset beads to a clean starting state.\n\n**Context:** GitHub issue #479 - users sometimes get beads into an invalid state after updates, and there's no clean way to start fresh. The git backup/restore mechanism that protects against accidental deletion also makes it hard to intentionally reset.\n\n**Current workaround** (from maphew):\n```bash\nbd daemons killall\ngit rm .beads/*.jsonl\ngit commit -m 'remove old issues'\nrm .beads/*\nbd init\nbd onboard\n```\n\n**Desired:** A proper `bd reset` command that handles this cleanly and safely.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-13T08:41:34.956552+11:00","updated_at":"2025-12-13T08:43:49.970591+11:00","closed_at":"2025-12-13T08:43:49.970591+11:00"} -{"id":"bd-j6lr","title":"GH#402: Add --parent flag documentation to bd onboard","description":"bd onboard output is missing --parent flag for epic subtasks. Agents guess wrong syntax (--deps parent:). See GitHub issue #402.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:56.594829-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-jgxi","title":"Auto-migrate database on CLI version bump","description":"When CLI is upgraded (e.g., 0.24.0 ā†’ 0.24.1), database version becomes stale. Add auto-migration in PersistentPreRun or daemon startup. Check dbVersion != CLIVersion and run bd migrate automatically. Fixes recurring UX issue where bd doctor shows version mismatch after every CLI upgrade.","status":"closed","issue_type":"feature","created_at":"2025-11-21T23:16:09.004619-08:00","updated_at":"2025-12-17T23:13:40.535453-08:00","closed_at":"2025-12-17T17:15:43.605762-08:00","dependencies":[{"issue_id":"bd-jgxi","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:09.005513-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-jvu","title":"Add bd update --parent flag to change issue parent","description":"Allow changing an issue's parent with bd update --parent \u003cnew-parent-id\u003e. Useful for reorganizing tasks under different epics or moving issues between hierarchies. Should update the parent-child dependency relationship.","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-17T22:24:07.274485-08:00","updated_at":"2025-12-17T22:34:07.318938-08:00","closed_at":"2025-12-17T22:34:07.318938-08:00"} -{"id":"bd-kpy","title":"Sync race: rebase-based divergence recovery resurrects tombstones","description":"## Problem\nWhen two repos sync simultaneously, tombstones can be resurrected:\n\n1. Repo A deletes issue (creates tombstone), pushes to sync branch\n2. Repo B (with 'closed' status) exports and tries to push\n3. Push fails (non-fast-forward)\n4. fetchAndRebaseInWorktree does git rebase\n5. Git rebase applies B's 'closed' patch on top of A's 'tombstone'\n6. TEXT-level rebase doesn't invoke beads merge driver\n7. 'closed' overwrites 'tombstone' = resurrection\n\n## Root Cause\nCommitToSyncBranch uses git rebase for divergence recovery, but rebase is text-level, not content-level. The proper content-level merge in PullFromSyncBranch handles tombstones correctly, but it runs AFTER the problematic push.\n\n## Proposed Fix\nOption 1: Don't push in CommitToSyncBranch - let PullFromSyncBranch handle merge+push\nOption 2: Replace git rebase with content-level merge in fetchAndRebaseInWorktree\nOption 3: Reorder sync steps: Export ā†’ Pull/Merge ā†’ Commit ā†’ Push\n\n## Workaround Applied\nExcluded tombstones from orphan detection warnings (commit 1e97d9cc).\n\nSee also: bd-3852 (Add orphan detection migration)","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-17T23:29:33.049272-08:00","updated_at":"2025-12-17T23:29:33.049272-08:00"} -{"id":"bd-kqo1","title":"Show pin indicator in bd list output","description":"Add a visual indicator (e.g., pin emoji or [P] marker) for pinned issues in bd list output so users can easily identify them.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-18T23:33:47.402549-08:00","updated_at":"2025-12-18T23:33:47.402549-08:00","dependencies":[{"issue_id":"bd-kqo1","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.771791-08:00","created_by":"daemon"},{"issue_id":"bd-kqo1","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.985271-08:00","created_by":"daemon"}]} -{"id":"bd-kwro","title":"Beads Messaging \u0026 Knowledge Graph (v0.30.2)","description":"Add messaging semantics and extended graph links to Beads, enabling it to serve as\nthe universal substrate for knowledge work - issues, messages, documents, and threads\nas nodes in a queryable graph.\n\n## Motivation\n\nGas Town (GGT) needs inter-agent communication. Rather than a separate mail system,\ncollapse messaging into Beads - one system, one sync, one query interface, all in git.\n\nThis also positions Beads as a foundation for:\n- Company-wide issue tracking (like Notion)\n- Threaded conversations (like Reddit/Slack)\n- Knowledge graphs with loose associations\n- Arbitrary workflow UIs built on top\n\n## New Issue Type\n\n**message** - ephemeral communication between workers\n- sender: who sent it\n- assignee: recipient\n- priority: P0 (urgent) to P4 (routine)\n- status: open (unread) -\u003e closed (read)\n- ephemeral: true = can be bulk-deleted after swarm\n\n## New Graph Links\n\n**replies_to** - conversation threading\n- Messages reply to messages\n- Enables Reddit-style nested threads\n- Different from parent_id (not hierarchy, its conversation flow)\n\n**relates_to** - loose see also associations\n- Bidirectional knowledge graph edges\n- Not blocking, not hierarchical, just related\n- Enables discovery and traversal\n\n**duplicates** - deduplication at scale\n- Mark issue B as duplicate of canonical issue A\n- Close B, link to A\n- Essential for large issue databases\n\n**supersedes** - version chains\n- Design Doc v2 supersedes Design Doc v1\n- Track evolution of artifacts\n\n## New Fields (optional, any issue type)\n\n- sender (string) - who created this (for messages)\n- ephemeral (boolean) - can be bulk-deleted when closed\n\n## New Commands\n\nMessaging:\n- bd mail send \u003crecipient\u003e -s Subject -m Body\n- bd mail inbox (list open messages for me)\n- bd mail read \u003cid\u003e (show message content)\n- bd mail ack \u003cid\u003e (mark as read/close)\n- bd mail reply \u003cid\u003e -m Response (reply to thread)\n\nGraph links:\n- bd relate \u003cid1\u003e \u003cid2\u003e (create relates_to link)\n- bd duplicate \u003cid\u003e --of \u003ccanonical\u003e (mark as duplicate)\n- bd supersede \u003cid\u003e --with \u003cnew\u003e (mark superseded)\n\nCleanup:\n- bd cleanup --ephemeral (delete closed ephemeral issues)\n\n## Identity Configuration\n\nWorkers need identity for sender field:\n- BEADS_IDENTITY env var\n- Or .beads/config.json: identity field\n\n## Hooks (for GGT integration)\n\nBeads as platform - extensible without knowing about GGT.\nHook files in .beads/hooks/:\n- on_create (runs after bd create)\n- on_update (runs after bd update)\n- on_close (runs after bd close)\n- on_message (runs after bd mail send)\n\nGGT registers hooks to notify daemons of new messages.\n\n## Schema Changes (Migration Required)\n\nAdd to issue schema:\n- type: message (new valid type)\n- sender: string (optional)\n- ephemeral: boolean (optional)\n- replies_to: string (issue ID, optional)\n- relates_to: []string (issue IDs, optional)\n- duplicates: string (canonical issue ID, optional)\n- superseded_by: string (new issue ID, optional)\n\nMigration adds fields as optional - existing beads unchanged.\n\n## Success Criteria\n\n1. bd mail send/inbox/read/ack/reply work end-to-end\n2. replies_to creates proper thread structure\n3. relates_to, duplicates, supersedes links queryable\n4. Hooks fire on create/update/close/message\n5. Identity configurable via env or config\n6. Migration preserves all existing data\n7. All new features have tests","status":"tombstone","issue_type":"epic","created_at":"2025-12-16T03:00:53.912223-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"epic"} -{"id":"bd-kwro.1","title":"Schema: Add message type and new fields","description":"Add to internal/storage/sqlite/schema.go and models:\n\nNew issue_type value:\n- message\n\nNew optional fields on Issue struct:\n- Sender string (who sent this)\n- Ephemeral bool (can be bulk-deleted)\n- RepliesTo string (issue ID for threading)\n- RelatesTo []string (issue IDs for knowledge graph)\n- Duplicates string (canonical issue ID)\n- SupersededBy string (replacement issue ID)\n\nUpdate:\n- internal/storage/sqlite/schema.go - add columns\n- internal/models/issue.go - add fields to struct\n- internal/storage/sqlite/sqlite.go - CRUD operations\n- Create migration from v0.30.1\n\nEnsure backward compatibility - all new fields optional.","status":"tombstone","issue_type":"task","created_at":"2025-12-16T03:01:19.777604-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-kwro.10","title":"Tests for messaging and graph links","description":"Comprehensive test coverage for all new features.\n\nTest files:\n- cmd/bd/mail_test.go - mail command tests\n- internal/storage/sqlite/graph_links_test.go - graph link tests\n- internal/hooks/hooks_test.go - hook execution tests\n\nTest cases:\n- Mail send/inbox/read/ack lifecycle\n- Thread creation and traversal (replies_to)\n- Bidirectional relates_to\n- Duplicate marking and queries\n- Supersedes chains\n- Ephemeral cleanup\n- Identity resolution priority\n- Hook execution (mock hooks)\n- Schema migration preserves data\n\nTarget: \u003e80% coverage on new code","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T03:02:34.050136-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-kwro.11","title":"Documentation for messaging and graph links","description":"Document all new features.\n\nFiles to update:\n- README.md - brief mention of messaging capability\n- AGENTS.md - update for AI agents using bd mail\n- docs/messaging.md (new) - full messaging reference\n- docs/graph-links.md (new) - graph link reference\n- CHANGELOG.md - v0.30.2 release notes\n\nTopics to cover:\n- Mail commands with examples\n- Graph link types and use cases\n- Identity configuration\n- Hooks setup for notifications\n- Migration notes","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T03:02:39.548518-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-kwro.2","title":"Graph Link: replies_to for conversation threading","description":"Implement replies_to link type for message threading.\n\nNew command:\n- bd mail reply \u003cid\u003e -m 'Response' creates a message with replies_to set\n\nQuery support:\n- bd show \u003cid\u003e --thread shows full conversation thread\n- Thread traversal in storage layer\n\nStorage:\n- replies_to column in issues table\n- Index for efficient thread queries\n\nThis enables Reddit-style nested threads where messages reply to other messages.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:25.292728-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-kwro.3","title":"Graph Link: relates_to for knowledge graph","description":"Implement relates_to link type for loose associations.\n\nNew command:\n- bd relate \u003cid1\u003e \u003cid2\u003e - creates bidirectional relates_to link\n\nQuery support:\n- bd show \u003cid\u003e --related shows related issues\n- bd list --related-to \u003cid\u003e\n\nStorage:\n- relates_to stored as JSON array of issue IDs\n- Consider: separate junction table for efficiency at scale?\n\nThis enables 'see also' connections without blocking or hierarchy.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:30.793115-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-kwro.4","title":"Graph Link: duplicates for deduplication","description":"Implement duplicates link type for marking issues as duplicates.\n\nNew command:\n- bd duplicate \u003cid\u003e --of \u003ccanonical\u003e - marks id as duplicate of canonical\n- Auto-closes the duplicate issue\n\nQuery support:\n- bd show \u003cid\u003e shows 'Duplicate of: \u003ccanonical\u003e'\n- bd list --duplicates shows all duplicate pairs\n\nStorage:\n- duplicates column pointing to canonical issue ID\n\nEssential for large issue databases with many similar reports.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:36.257223-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-kwro.5","title":"Graph Link: supersedes for version chains","description":"Implement supersedes link type for version tracking.\n\nNew command:\n- bd supersede \u003cid\u003e --with \u003cnew\u003e - marks id as superseded by new\n- Auto-closes the superseded issue\n\nQuery support:\n- bd show \u003cid\u003e shows 'Superseded by: \u003cnew\u003e'\n- bd show \u003cnew\u003e shows 'Supersedes: \u003cid\u003e'\n- bd list --superseded shows version chains\n\nStorage:\n- superseded_by column pointing to replacement issue\n\nUseful for design docs, specs, and evolving artifacts.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:41.749294-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-kwro.6","title":"Mail Commands: bd mail send/inbox/read/ack","description":"Implement core mail commands in cmd/bd/mail.go\n\nCommands:\n- bd mail send \u003crecipient\u003e -s 'Subject' -m 'Body' [--urgent]\n - Creates issue with type=message, sender=identity, assignee=recipient\n - --urgent sets priority=0\n \n- bd mail inbox [--from \u003csender\u003e] [--priority \u003cn\u003e]\n - Lists open messages where assignee=my identity\n - Sorted by priority, then date\n \n- bd mail read \u003cid\u003e\n - Shows full message content (subject, body, sender, timestamp)\n - Does NOT close (separate from ack)\n \n- bd mail ack \u003cid\u003e\n - Marks message as read by closing it\n - Can ack multiple: bd mail ack \u003cid1\u003e \u003cid2\u003e ...\n\nRequires: Identity configuration (bd-kwro.7)","status":"tombstone","issue_type":"task","created_at":"2025-12-16T03:02:12.103755-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-kwro.7","title":"Identity Configuration","description":"Implement identity system for sender field.\n\nConfiguration sources (in priority order):\n1. --identity flag on commands\n2. BEADS_IDENTITY environment variable\n3. .beads/config.json: {\"identity\": \"worker-name\"}\n4. Default: git user.name or hostname\n\nNew config file support:\n- .beads/config.json for per-repo settings\n- identity field for messaging\n\nHelper function:\n- GetIdentity() string - resolves identity from sources\n\nUpdate bd mail send to use GetIdentity() for sender field.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:02:17.603608-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-kwro.8","title":"Hooks System","description":"Implement hook system for extensibility.\n\nHook directory: .beads/hooks/\nHook files (executable scripts):\n- on_create - runs after bd create\n- on_update - runs after bd update \n- on_close - runs after bd close\n- on_message - runs after bd mail send\n\nHook invocation:\n- Pass issue ID as first argument\n- Pass event type as second argument\n- Pass JSON issue data on stdin\n- Run asynchronously (dont block command)\n\nExample hook (GGT notification):\n #!/bin/bash\n gt notify --event=$2 --issue=$1\n\nThis allows GGT to register notification handlers without Beads knowing about GGT.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:02:23.086393-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-kwro.9","title":"Cleanup: --ephemeral flag","description":"Update bd cleanup to handle ephemeral issues.\n\nNew flag:\n- bd cleanup --ephemeral - deletes all CLOSED issues with ephemeral=true\n\nBehavior:\n- Only deletes if status=closed AND ephemeral=true\n- Respects --dry-run flag\n- Reports count of deleted ephemeral issues\n\nThis allows swarm cleanup to remove transient messages without affecting permanent issues.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T03:02:28.563871-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-kyo","title":"Run tests and linting","description":"Run the full test suite and linter:\n\n```bash\nTMPDIR=/tmp go test -short ./...\ngolangci-lint run ./...\n```\n\nFix any failures. Linting warnings acceptable (see LINTING.md).","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:59.290588-08:00","updated_at":"2025-12-18T22:44:36.570262-08:00","closed_at":"2025-12-18T22:44:36.570262-08:00","dependencies":[{"issue_id":"bd-kyo","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.370234-08:00","created_by":"daemon"},{"issue_id":"bd-kyo","depends_on_id":"bd-8hy","type":"blocks","created_at":"2025-12-18T22:43:20.570742-08:00","created_by":"daemon"}]} -{"id":"bd-lfak","title":"bd preflight: PR readiness checks for contributors","description":"## Vision\n\nEncode project-specific institutional knowledge into executable checks. CONTRIBUTING.md is documentation that's read once and forgotten; `bd preflight` is documentation that runs at exactly the right moment.\n\n## Problem Statement\n\nContributors face a \"last mile\" problem - they do the work but stumble on project-specific gotchas at PR time:\n- Nix vendorHash gets stale when go.sum changes\n- Beads artifacts leak into PRs (see bd-umbf for namespace solution)\n- Version mismatches between version.go and default.nix\n- Tests/lint not run locally before pushing\n- Other project-specific checks that only surface when CI fails\n\nThese are too obscure to remember, exist in docs nobody reads end-to-end, and waste CI round-trips.\n\n## Why beads?\n\nBeads already has a foothold in the contributor workflow. It knows:\n- Git state (staged files, branch, dirty status)\n- Project structure\n- The specific issue being worked on\n- Project-specific configuration\n\n## Proposed Interface\n\n### Tier 1: Checklist Mode (v1)\n\n $ bd preflight\n PR Readiness Checklist:\n\n [ ] Tests pass: go test -short ./...\n [ ] Lint passes: golangci-lint run ./...\n [ ] No beads pollution: check .beads/issues.jsonl diff\n [ ] Nix hash current: go.sum unchanged or vendorHash updated\n [ ] Version sync: version.go matches default.nix\n\n Run 'bd preflight --check' to validate automatically.\n\n### Tier 2: Check Mode (v2)\n\n $ bd preflight --check\n āœ“ Tests pass\n āœ“ Lint passes\n āš  Beads pollution: 3 issues in diff - are these project issues or personal?\n āœ— Nix hash stale: go.sum changed, vendorHash needs update\n Fix: sha256-KRR6dXzsSw8OmEHGBEVDBOoIgfoZ2p0541T9ayjGHlI=\n āœ“ Version sync\n\n 1 error, 1 warning. Run 'bd preflight --fix' to auto-fix where possible.\n\n### Tier 3: Fix Mode (v3)\n\n $ bd preflight --fix\n āœ“ Updated vendorHash in default.nix\n āš  Cannot auto-fix beads pollution - manual review needed\n\n## Checks to Implement\n\n| Check | Description | Auto-fixable |\n|-------|-------------|--------------|\n| tests | Run go test -short ./... | No |\n| lint | Run golangci-lint | Partial (gofmt) |\n| beads-pollution | Detect personal issues in diff | No (see bd-umbf) |\n| nix-hash | Detect stale vendorHash | Yes (if nix available) |\n| version-sync | version.go matches default.nix | Yes |\n| no-debug | No TODO/FIXME/console.log | Warn only |\n| clean-stage | No unintended files staged | Warn only |\n\n## Future: Configuration\n\nMake checks configurable per-project via .beads/preflight.yaml:\n\n preflight:\n checks:\n - name: tests\n run: go test -short ./...\n required: true\n - name: no-secrets\n pattern: \"**/*.env\"\n staged: deny\n - name: custom-check\n run: ./scripts/validate.sh\n\nThis lets any project using beads define their own preflight checks.\n\n## Implementation Phases\n\n### Phase 1: Static Checklist\n- Implement bd preflight with hardcoded checklist for beads\n- No execution, just prints what to check\n- Update CONTRIBUTING.md to reference it\n\n### Phase 2: Automated Checks\n- Implement bd preflight --check\n- Run tests, lint, detect stale hashes\n- Clear pass/fail/warn output\n\n### Phase 3: Auto-fix\n- Implement bd preflight --fix\n- Fix vendorHash, version sync\n- Integrate with bd-umbf solution for pollution\n\n### Phase 4: Configuration\n- .beads/preflight.yaml support\n- Make it useful for other projects using beads\n- Plugin/hook system for custom checks\n\n## Dependencies\n\n- bd-umbf: Namespace isolation for beads pollution (blocking for full solution)\n\n## Success Metrics\n\n- Fewer CI failures on first PR push\n- Reduced \"fix nix hash\" commits\n- Contributors report preflight caught issues before CI","status":"open","priority":2,"issue_type":"epic","created_at":"2025-12-13T18:01:39.587078-08:00","updated_at":"2025-12-13T18:01:39.587078-08:00","dependencies":[{"issue_id":"bd-lfak","depends_on_id":"bd-umbf","type":"blocks","created_at":"2025-12-13T18:01:46.059901-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-llfl","title":"Improve test coverage for cmd/bd CLI (26.2% ā†’ 50%)","description":"The main CLI package (cmd/bd) has only 26.2% test coverage. CLI commands should have at least 50% coverage to ensure reliability.\n\nKey areas with low/no coverage:\n- daemon_autostart.go (multiple 0% functions)\n- compact.go (several 0% functions)\n- Various command handlers\n\nCurrent coverage: 26.2%\nTarget coverage: 50%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:03.123341-08:00","updated_at":"2025-12-13T21:01:18.901944-08:00"} -{"id":"bd-lo4","title":"Test pinned issue","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-18T21:44:49.031385-08:00","updated_at":"2025-12-18T21:47:25.055109-08:00","deleted_at":"2025-12-18T21:47:25.055109-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-lsv4","title":"GH#444: Fix inconsistent status naming in_progress vs in-progress","description":"Documentation uses in-progress (hyphen) but code expects in_progress (underscore). Update all docs to use canonical in_progress. See GitHub issue #444.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:14.349425-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-lw0x","title":"Fix bd sync race condition with daemon causing dirty working directory","description":"After bd sync completes with sync.branch mode, subsequent bd commands or daemon file watcher would see a hash mismatch and trigger auto-import, which then schedules re-export, dirtying the working directory.\n\n**Root cause:**\n1. bd sync exports JSONL with NEW content (hash H1)\n2. bd sync updates jsonl_content_hash = H1 in DB\n3. bd sync restores JSONL from HEAD (OLD content, hash H0)\n4. Now: file hash = H0, DB hash = H1 (MISMATCH)\n5. Daemon or next CLI command sees mismatch, imports from OLD JSONL\n6. Import triggers re-export ā†’ file is dirty\n\n**Fix:**\nAfter restoreBeadsDirFromBranch(), update jsonl_content_hash to match the restored file's hash. This ensures daemon and CLI see file hash = DB hash ā†’ no spurious import/export cycle.\n\nRelated: bd-c83r (multiple daemon prevention)","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-13T06:42:17.130839-08:00","updated_at":"2025-12-13T06:43:33.329042-08:00","closed_at":"2025-12-13T06:43:33.329042-08:00"} -{"id":"bd-lxzx","title":"Add close_reason to JSONL export format documentation","description":"PR #551 now persists close_reason to the database, but there's a question about whether this field should be exported to JSONL format.\n\n## Current State\n- close_reason is stored in issues.close_reason column\n- close_reason is also stored in events table (audit trail)\n- The JSONL export format may or may not include close_reason\n\n## Questions\n1. Should close_reason be exported to JSONL format?\n2. If yes, where should it go (root level or nested in events)?\n3. Should there be any special handling to avoid duplication?\n4. How should close_reason be handled during JSONL import?\n\n## Why This Matters\n- JSONL is the git-friendly sync format\n- Other beads instances import from JSONL\n- close_reason is meaningful data that should be preserved across clones\n\n## Suggested Action\n- Check if close_reason is currently exported in JSONL\n- If not, add it to the export schema\n- Document the field in JSONL format spec\n- Add tests for round-trip (export -\u003e import -\u003e verify close_reason)","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:17.414916-08:00","updated_at":"2025-12-14T14:25:17.414916-08:00","dependencies":[{"issue_id":"bd-lxzx","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:17.416131-08:00","created_by":"stevey","metadata":"{}"}]} -{"id":"bd-m8ro","title":"Improve test coverage for internal/rpc (47.5% ā†’ 60%)","description":"The RPC package has only 47.5% test coverage. RPC is the communication layer for daemon operations.\n\nCurrent coverage: 47.5%\nTarget coverage: 60%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:09.515299-08:00","updated_at":"2025-12-13T21:01:17.17404-08:00"} -{"id":"bd-mql4","title":"getLocalSyncBranch silently ignores YAML parse errors","description":"In autoimport.go:170-172, YAML parsing errors are silently ignored. If a user has malformed YAML in config.yaml, sync-branch will just silently be empty with no feedback.\n\nRecommendation: Add debug logging since this function is only called during auto-import, and debugging silent failures is painful.\n\nAdd: debug.Logf(\"Warning: failed to parse config.yaml: %v\", err)","status":"open","priority":4,"issue_type":"task","created_at":"2025-12-07T02:03:44.217728-08:00","updated_at":"2025-12-07T02:03:44.217728-08:00"} -{"id":"bd-muw","title":"Add empty tasks validation in workflow create","description":"workflow.go:321 will panic if wf.Tasks is empty. Add validation that len(wf.Tasks) \u003e 0 before accessing wf.Tasks[0].","status":"closed","priority":3,"issue_type":"bug","created_at":"2025-12-17T22:23:00.75707-08:00","updated_at":"2025-12-17T22:34:07.281133-08:00","closed_at":"2025-12-17T22:34:07.281133-08:00"} -{"id":"bd-n386","title":"Improve test coverage for internal/daemon (27.3% ā†’ 60%)","description":"The daemon package has only 27.3% test coverage. The daemon is critical for background operations and reliability.\n\nKey areas needing tests:\n- Daemon autostart logic\n- Socket handling\n- PID file management\n- Health checks\n\nCurrent coverage: 27.3%\nTarget coverage: 60%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:00.895238-08:00","updated_at":"2025-12-13T21:01:17.274438-08:00"} -{"id":"bd-n3v","title":"Error committing to sync branch: failed to create worktree","description":"\u003e bd sync --no-daemon\nā†’ Exporting pending changes to JSONL...\nā†’ Committing changes to sync branch 'beads-sync'...\nError committing to sync branch: failed to create worktree: failed to create worktree parent directory: mkdir /var/home/matt/dev/beads/fix-ci/.git: not a directory","notes":"**Problem Diagnosed**: The `bd sync` command was failing with \"mkdir /var/home/matt/dev/beads/fix-ci/.git: not a directory\" because it was being executed from the wrong directory.\n\n**Root Cause**: The command was run from `/var/home/matt/dev/beads` (where the `fix-ci` worktree exists) instead of the main repository directory `/var/home/matt/dev/beads/main`. Since `fix-ci` is a git worktree with a `.git` file (not directory), the worktree creation logic failed when trying to create `\u003ccurrent_dir\u003e/.git/beads-worktrees/\u003cbranch\u003e`.\n\n**Solution Verified**: Execute `bd sync` from the main repository directory:\n```bash\ncd main \u0026\u0026 bd sync --dry-run\n```\n","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-05T15:25:24.514998248-07:00","updated_at":"2025-12-05T15:42:32.910166956-07:00"} -{"id":"bd-n4td","title":"Add warning when staleness check errors","description":"## Problem\n\nWhen ensureDatabaseFresh() calls CheckStaleness() and it errors (corrupted metadata, permission issues, etc.), we silently proceed with potentially stale data.\n\n**Location:** cmd/bd/staleness.go:27-32\n\n**Scenarios:**\n- Corrupted metadata table\n- Database locked by another process \n- Permission issues reading JSONL file\n- Invalid last_import_time format in DB\n\n## Current Code\n\n```go\nisStale, err := autoimport.CheckStaleness(ctx, store, dbPath)\nif err \\!= nil {\n // If we can't determine staleness, allow operation to proceed\n // (better to show potentially stale data than block user)\n return nil\n}\n```\n\n## Fix\n\n```go\nisStale, err := autoimport.CheckStaleness(ctx, store, dbPath)\nif err \\!= nil {\n fmt.Fprintf(os.Stderr, \"Warning: Could not verify database freshness: %v\\n\", err)\n fmt.Fprintf(os.Stderr, \"Proceeding anyway. Data may be stale.\\n\\n\")\n return nil\n}\n```\n\n## Impact\nMedium - users should know when staleness check fails\n\n## Effort\nEasy - 5 minutes","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-11-20T20:16:34.889997-05:00","updated_at":"2025-12-17T23:13:40.531031-08:00","closed_at":"2025-12-17T19:11:12.950618-08:00","dependencies":[{"issue_id":"bd-n4td","depends_on_id":"bd-2q6d","type":"blocks","created_at":"2025-11-20T20:18:20.154723-05:00","created_by":"stevey","metadata":"{}"}]} -{"id":"bd-n777","title":"Timer beads for scheduled agent callbacks","description":"## Problem\n\nAgents frequently need to wait for external events (CI completion, PR reviews, artifact builds) but have no good mechanism:\n- `sleep N` blocks and is unreliable (often times out at 8+ minutes)\n- Polling wastes context and is easy to forget\n- No way to survive session restarts\n\n## Proposal: Timer Beads\n\nA new bead type or field that represents a scheduled callback:\n\n### Creating timers\n```bash\nbd timer create --in 30s --callback \"Check CI run 12345\" --issue bd-xyz\nbd timer create --at \"2025-12-20T08:00:00\" --callback \"Morning standup\"\nbd timer create --in 5m --on-expire \"tmux send-keys -t dave 'bd show bd-xyz'\"\n```\n\n### Timer storage\n- Store in beads (survives restarts)\n- Fields: `expires_at`, `callback_description`, `on_expire_command`, `linked_issue`\n- Status: pending, fired, cancelled\n\n### Deacon integration\nThe Deacon daemon monitors timer beads:\n1. Wakes on next timer expiry\n2. Executes `on_expire` command (e.g., tmux send-keys to interrupt agent)\n3. Marks timer as fired\n4. Optionally updates linked issue\n\n### Use cases\n- CI monitoring: \"ping me when build completes\"\n- PR reviews: \"check back in 1 hour\"\n- Scheduled tasks: \"remind me at EOD to sync\"\n- Blocking waits: agent registers callback instead of sleeping\n\n## Acceptance criteria\n- [ ] Timer bead type or field design\n- [ ] `bd timer create/list/cancel` commands\n- [ ] Deacon timer monitoring loop\n- [ ] tmux integration for agent interrupts\n- [ ] Survives daemon restarts","status":"open","priority":2,"issue_type":"feature","created_at":"2025-12-19T23:05:33.051861-08:00","updated_at":"2025-12-19T23:05:33.051861-08:00"} -{"id":"bd-ncwo","title":"Ghost resurrection: remote status:closed wins during git merge","description":"During bd sync, the 3-way git merge sometimes keeps remote's status:closed instead of local's status:tombstone. This causes ghost issues to resurrect even when tombstones exist.\n\nRoot cause: Git 3-way merge doesn't understand tombstone semantics. If base had closed, local changed to tombstone, and remote has closed, git might keep remote's version.\n\nThe early tombstone check in importer.go only prevents CREATION when tombstones exist in DB. But if applyDeletionsFromMerge hard-deletes the tombstones before import runs (because they're not in the merged result), the check doesn't help.\n\nPotential fixes:\n1. Make tombstones 'win' in the beads merge driver (internal/merge/merge.go)\n2. Don't hard-delete tombstones in applyDeletionsFromMerge if they're in the DB\n3. Export tombstones to a separate file that's not subject to merge\n\nGhost issues: bd-cb64c226.*, bd-cbed9619.*","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T22:01:03.56423-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-ndye","title":"mergeDependencies uses union instead of 3-way merge","description":"## Critical Bug\n\nThe `mergeDependencies` function in internal/merge/merge.go performs a UNION of left and right dependencies instead of a proper 3-way merge. This causes removed dependencies to be resurrected.\n\n### Root Cause\n\n```go\n// Current code (lines 795-816):\nfunc mergeDependencies(left, right []Dependency) []Dependency {\n // Just unions left + right\n // NEVER REMOVES anything\n // Doesn't even look at base!\n}\n```\n\nAnd `mergeIssue` (line 579) doesn't pass `base`:\n```go\nresult.Dependencies = mergeDependencies(left.Dependencies, right.Dependencies)\n```\n\n### Impact\n\nIf:\n- Base has dependency D\n- Left removes D (intentional)\n- Right still has D (stale)\n\nCurrent: D is in result (resurrection!)\nCorrect: Left removed it, D should NOT be in result\n\nThis breaks Gas Town's workflow and data integrity. Closed means closed.\n\n### Fix\n\nChange `mergeDependencies` to take `base` and do proper 3-way merge:\n- If dep was in base and removed by left ā†’ exclude (left wins)\n- If dep was in base and removed by right ā†’ exclude (right wins)\n- If dep wasn't in base and added by either ā†’ include\n- If dep was in base and both still have it ā†’ include\n\nKey principle: **REMOVALS ARE AUTHORITATIVE**\n\n### Files to Change\n\n1. internal/merge/merge.go:\n - `mergeDependencies(left, right)` ā†’ `mergeDependencies(base, left, right)`\n - `mergeIssue` line 579: pass `base.Dependencies`\n\n### Related\n\nThis also explains why `ProtectLocalExportIDs` in importer is defined but never used - the protection was never actually implemented.","status":"closed","issue_type":"bug","created_at":"2025-12-18T23:15:54.475872-08:00","updated_at":"2025-12-18T23:21:10.709571-08:00","closed_at":"2025-12-18T23:21:10.709571-08:00"} -{"id":"bd-nl2","title":"No logging/debugging for tombstone resurrection events","description":"Per the design document bd-zvg Open Question 1: Should resurrection log a warning? Recommendation was Yes. Currently, when an expired tombstone loses to a live issue (resurrection), there is no logging or debugging output. This makes it hard to understand why an issue reappeared. Recommendation: Add optional debug logging when resurrection occurs, e.g., Issue bd-abc resurrected (tombstone expired). Files: internal/merge/merge.go:359-366, 371-378, 400-405, 410-415","status":"open","priority":4,"issue_type":"feature","created_at":"2025-12-05T16:36:52.27525-08:00","updated_at":"2025-12-05T16:36:52.27525-08:00"} -{"id":"bd-nuh1","title":"GH#403: bd doctor --fix circular error message","description":"bd doctor --fix suggests running bd doctor --fix for deletions manifest issue. Fix to provide actual resolution. See GitHub issue #403.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:16.290018-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-o4qy","title":"Improve CheckStaleness error handling","description":"## Problem\n\nCheckStaleness returns 'false' (not stale) for multiple error conditions instead of returning errors. This masks problems.\n\n**Location:** internal/autoimport/autoimport.go:253-285\n\n## Edge Cases That Return False\n\n1. **Invalid last_import_time format** (line 259-262)\n2. **No JSONL file found** (line 267-277) \n3. **JSONL stat fails** (line 279-282)\n\n## Fix\n\nReturn errors for abnormal conditions:\n\n```go\nlastImportTime, err := time.Parse(time.RFC3339, lastImportStr)\nif err != nil {\n return false, fmt.Errorf(\"corrupted last_import_time: %w\", err)\n}\n\nif jsonlPath == \"\" {\n return false, fmt.Errorf(\"no JSONL file found\")\n}\n\nstat, err := os.Stat(jsonlPath)\nif err != nil {\n return false, fmt.Errorf(\"cannot stat JSONL: %w\", err)\n}\n```\n\n## Impact\nMedium - edge cases are rare but should be handled\n\n## Effort \n30 minutes - requires updating callers in RPC server","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-11-20T20:17:27.606219-05:00","updated_at":"2025-12-17T23:13:40.536905-08:00","closed_at":"2025-12-17T19:11:12.965289-08:00","dependencies":[{"issue_id":"bd-o4qy","depends_on_id":"bd-2q6d","type":"blocks","created_at":"2025-11-20T20:18:26.81065-05:00","created_by":"stevey","metadata":"{}"}]} -{"id":"bd-o55a","title":"GH#509: bd doesn't find .beads when running from nested worktrees","description":"When worktrees are nested under main repo (.worktrees/feature/), bd stops at worktree git root instead of continuing to find .beads in parent. See GitHub issue #509 for detailed fix suggestion.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:20.281591-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-o9o","title":"Exclude pinned issues from bd ready","description":"Update bd ready to exclude pinned issues. Pinned issues are context markers, not work items, and should never appear in the ready-to-work list.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:41.979073-08:00","updated_at":"2025-12-18T23:33:41.979073-08:00","dependencies":[{"issue_id":"bd-o9o","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.392931-08:00","created_by":"daemon"},{"issue_id":"bd-o9o","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.612655-08:00","created_by":"daemon"}]} -{"id":"bd-ola6","title":"Implement transaction retry logic for SQLITE_BUSY","description":"BEGIN IMMEDIATE fails immediately on SQLITE_BUSY instead of retrying with exponential backoff.\n\nLocation: internal/storage/sqlite/sqlite.go:223-225\n\nProblem:\n- Under concurrent write load, BEGIN IMMEDIATE can fail with SQLITE_BUSY\n- Current implementation fails immediately instead of retrying\n- Results in spurious failures under normal concurrent usage\n\nSolution: Implement exponential backoff retry:\n- Retry up to N times (e.g., 5)\n- Backoff: 10ms, 20ms, 40ms, 80ms, 160ms\n- Check for context cancellation between retries\n- Only retry on SQLITE_BUSY/database locked errors\n\nImpact: Spurious failures under concurrent write load\n\nEffort: 3 hours","status":"open","priority":1,"issue_type":"feature","created_at":"2025-11-16T14:51:31.247147-08:00","updated_at":"2025-11-16T14:51:31.247147-08:00"} -{"id":"bd-ork0","title":"Add comments to 30+ silently ignored errors or fix them","description":"Code health review found 30+ instances of error suppression using blank identifier without explanation:\n\nGood examples (with comments):\n- merge.go: _ = gitRmCmd.Run() // Ignore errors\n- daemon_watcher.go: _ = watcher.Add(...) // Ignore error\n\nBad examples (no context):\n- create.go:213: dbPrefix, _ = store.GetConfig(ctx, \"issue_prefix\")\n- daemon_sync_branch.go: _ = daemonClient.Close()\n- migrate_hash_ids.go, version_tracking.go: _ = store.Close()\n\nFix: Add comments explaining WHY errors are ignored, or handle them properly.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:25.899372-08:00","updated_at":"2025-12-16T18:17:25.899372-08:00","dependencies":[{"issue_id":"bd-ork0","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.275843-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-ot0w","title":"Work on beads-tip: Fix broken Claude integration link in ...","description":"Work on beads-tip: Fix broken Claude integration link in bd doctor (GH#623). Update URL that doesn't exist. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:08.429157-08:00","updated_at":"2025-12-19T23:20:39.790305-08:00","closed_at":"2025-12-19T23:20:39.790305-08:00"} -{"id":"bd-otf4","title":"Code Review: PR #481 - Context Engineering Optimizations","description":"Comprehensive code review of the merged context engineering PR (PR #481) that reduces MCP context usage by 80-90%.\n\n## Summary\nThe PR successfully implements lazy tool schema loading and minimal issue models to reduce context window usage. Overall implementation is solid and well-tested.\n\n## Positive Findings\nāœ… Well-designed models (IssueMinimal, CompactedResult)\nāœ… Comprehensive test coverage (28 tests, all passing)\nāœ… Clear documentation and comments\nāœ… Backward compatibility preserved (show() still returns full Issue)\nāœ… Sensible defaults (COMPACTION_THRESHOLD=20, PREVIEW_COUNT=5)\nāœ… Tool catalog complete with all 15 tools documented\n\n## Issues Identified\nSee linked issues for specific followup tasks.\n\n## Context Engineering Architecture\n- discover_tools(): List tool names only (~500 bytes vs ~15KB)\n- get_tool_info(name): Get specific tool details on-demand\n- IssueMinimal: Lightweight model for list views (~80 bytes vs ~400 bytes)\n- CompactedResult: Auto-compacts results with \u003e20 issues\n- _to_minimal(): Conversion function (efficient, no N+1 issues)","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:24:13.523532-08:00","updated_at":"2025-12-14T14:24:13.523532-08:00"} -{"id":"bd-otli","title":"Wait for CI to pass","description":"Monitor GitHub Actions - all checks must pass before release artifacts are built","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:03.022281-08:00","updated_at":"2025-12-20T00:25:52.635223-08:00","closed_at":"2025-12-20T00:25:52.635223-08:00","close_reason":"CI passed - Release workflow completed successfully","dependencies":[{"issue_id":"bd-otli","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.097564-08:00","created_by":"daemon"},{"issue_id":"bd-otli","depends_on_id":"bd-7tuu","type":"blocks","created_at":"2025-12-19T22:56:23.360436-08:00","created_by":"daemon"}]} -{"id":"bd-pbh","title":"Release v0.30.4","description":"## Version Bump Workflow\n\nCoordinating release from 0.30.3 to 0.30.4.\n\n### Components Updated\n- Go CLI (cmd/bd/version.go)\n- Claude Plugin (.claude-plugin/*.json)\n- MCP Server (integrations/beads-mcp/)\n- npm Package (npm-package/package.json)\n- Git hooks (cmd/bd/templates/hooks/)\n\n### Release Channels\n- GitHub Releases (GoReleaser)\n- PyPI (beads-mcp)\n- npm (@beads/cli)\n- Homebrew (homebrew-beads tap)\n","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-17T21:19:10.926133-08:00","updated_at":"2025-12-17T21:46:46.192948-08:00","closed_at":"2025-12-17T21:46:46.192948-08:00","labels":["release","v0.30.4","workflow"]} -{"id":"bd-pbh.1","title":"Update cmd/bd/version.go to 0.30.4","description":"Update the Version constant in cmd/bd/version.go:\n```go\nVersion = \"0.30.4\"\n```\n\n\n```verify\ngrep -q 'Version = \"0.30.4\"' cmd/bd/version.go\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.9462-08:00","updated_at":"2025-12-17T21:46:46.20387-08:00","closed_at":"2025-12-17T21:46:46.20387-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.1","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.946633-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.10","title":"Run check-versions.sh - all must pass","description":"Run the version consistency check:\n```bash\n./scripts/check-versions.sh\n```\n\nAll versions must match 0.30.4.\n\n\n```verify\n./scripts/check-versions.sh\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.047311-08:00","updated_at":"2025-12-17T21:46:46.28316-08:00","closed_at":"2025-12-17T21:46:46.28316-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.047888-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.1","type":"blocks","created_at":"2025-12-17T21:19:11.159084-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.4","type":"blocks","created_at":"2025-12-17T21:19:11.168248-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.5","type":"blocks","created_at":"2025-12-17T21:19:11.177869-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.6","type":"blocks","created_at":"2025-12-17T21:19:11.187629-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.7","type":"blocks","created_at":"2025-12-17T21:19:11.199955-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.8","type":"blocks","created_at":"2025-12-17T21:19:11.211479-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.9","type":"blocks","created_at":"2025-12-17T21:19:11.224059-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.11","title":"Commit changes and create v0.30.4 tag","description":"```bash\ngit add -A\ngit commit -m \"chore: Bump version to 0.30.4\"\ngit tag -a v0.30.4 -m \"Release v0.30.4\"\n```\n\n\n```verify\ngit describe --tags --exact-match HEAD 2\u003e/dev/null | grep -q 'v0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.056575-08:00","updated_at":"2025-12-17T21:46:46.292166-08:00","closed_at":"2025-12-17T21:46:46.292166-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.056934-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh.10","type":"blocks","created_at":"2025-12-17T21:19:11.234175-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh.2","type":"blocks","created_at":"2025-12-17T21:19:11.245316-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh.3","type":"blocks","created_at":"2025-12-17T21:19:11.255362-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.12","title":"Push commit and tag to origin","description":"```bash\ngit push origin main\ngit push origin v0.30.4\n```\n\nThis triggers GitHub Actions:\n- GoReleaser build\n- PyPI publish\n- npm publish\n\n\n```verify\ngit ls-remote origin refs/tags/v0.30.4 | grep -q 'v0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.066074-08:00","updated_at":"2025-12-17T21:46:46.301948-08:00","closed_at":"2025-12-17T21:46:46.301948-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.12","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.066442-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.12","depends_on_id":"bd-pbh.11","type":"blocks","created_at":"2025-12-17T21:19:11.265986-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.13","title":"Monitor GoReleaser CI job","description":"Watch the GoReleaser action:\nhttps://github.com/steveyegge/beads/actions/workflows/release.yml\n\nShould complete in ~10 minutes and create:\n- GitHub Release with binaries for all platforms\n- Checksums and signatures\n\nCheck status:\n```bash\ngh run list --workflow=release.yml -L 1\ngh run watch # to monitor live\n```\n\nVerify release exists:\n```bash\ngh release view v0.30.4\n```\n\n\n```verify\ngh release view v0.30.4 --json tagName -q .tagName | grep -q 'v0.30.4'\n```","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.074476-08:00","updated_at":"2025-12-17T21:46:46.311506-08:00","closed_at":"2025-12-17T21:46:46.311506-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.13","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.074833-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.13","depends_on_id":"bd-pbh.12","type":"blocks","created_at":"2025-12-17T21:19:11.279092-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.14","title":"Monitor PyPI publish","description":"Watch the PyPI publish action:\nhttps://github.com/steveyegge/beads/actions/workflows/pypi-publish.yml\n\nVerify at: https://pypi.org/project/beads-mcp/0.30.4/\n\nCheck:\n```bash\npip index versions beads-mcp 2\u003e/dev/null | grep -q '0.30.4'\n```\n\n\n```verify\npip index versions beads-mcp 2\u003e/dev/null | grep -q '0.30.4' || curl -s https://pypi.org/pypi/beads-mcp/json | jq -e '.releases[\"0.30.4\"]'\n```","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.083809-08:00","updated_at":"2025-12-17T21:46:46.320922-08:00","closed_at":"2025-12-17T21:46:46.320922-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.14","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.084126-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.14","depends_on_id":"bd-pbh.12","type":"blocks","created_at":"2025-12-17T21:19:11.289698-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.15","title":"Monitor npm publish","description":"Watch the npm publish action:\nhttps://github.com/steveyegge/beads/actions/workflows/npm-publish.yml\n\nVerify at: https://www.npmjs.com/package/@anthropics/claude-code-beads-plugin/v/0.30.4\n\nCheck:\n```bash\nnpm view @anthropics/claude-code-beads-plugin@0.30.4 version\n```\n\n\n```verify\nnpm view @anthropics/claude-code-beads-plugin@0.30.4 version 2\u003e/dev/null | grep -q '0.30.4'\n```","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.091806-08:00","updated_at":"2025-12-17T21:46:46.333213-08:00","closed_at":"2025-12-17T21:46:46.333213-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.15","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.092205-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.15","depends_on_id":"bd-pbh.12","type":"blocks","created_at":"2025-12-17T21:19:11.301843-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.16","title":"Update Homebrew formula","description":"After GoReleaser completes, the Homebrew tap should be auto-updated.\n\nIf manual update needed:\n```bash\n./scripts/update-homebrew.sh v0.30.4\n```\n\nOr manually update steveyegge/homebrew-beads with new SHA256.\n\nVerify:\n```bash\nbrew update\nbrew info beads\n```\n","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.100213-08:00","updated_at":"2025-12-17T21:46:46.341942-08:00","closed_at":"2025-12-17T21:46:46.341942-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.16","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.100541-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.16","depends_on_id":"bd-pbh.13","type":"blocks","created_at":"2025-12-17T21:19:11.312625-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.17","title":"Install 0.30.4 Go binary locally","description":"Rebuild and install the Go binary:\n```bash\ngo install ./cmd/bd\n# OR\nmake install\n```\n\nVerify:\n```bash\nbd --version\n```\n\n\n```verify\nbd --version 2\u003e\u00261 | grep -q '0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.108597-08:00","updated_at":"2025-12-17T21:46:46.352702-08:00","closed_at":"2025-12-17T21:46:46.352702-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.17","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.108917-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.17","depends_on_id":"bd-pbh.13","type":"blocks","created_at":"2025-12-17T21:19:11.322091-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.18","title":"Restart beads daemon","description":"Kill any running daemons so they pick up the new version:\n```bash\nbd daemons killall\n```\n\nStart fresh daemon:\n```bash\nbd list # triggers daemon start\n```\n\nVerify daemon version:\n```bash\nbd version --daemon\n```\n\n\n```verify\nbd version --daemon 2\u003e\u00261 | grep -q '0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.11636-08:00","updated_at":"2025-12-17T21:46:46.364842-08:00","closed_at":"2025-12-17T21:46:46.364842-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.18","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.116706-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.18","depends_on_id":"bd-pbh.17","type":"blocks","created_at":"2025-12-17T21:19:11.330411-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.19","title":"Install 0.30.4 MCP server locally","description":"Upgrade the MCP server (after PyPI publish):\n```bash\npip install --upgrade beads-mcp\n# OR if using uv:\nuv tool upgrade beads-mcp\n```\n\nVerify:\n```bash\npip show beads-mcp | grep Version\n```\n\n\n```verify\npip show beads-mcp 2\u003e/dev/null | grep -q 'Version: 0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.124496-08:00","updated_at":"2025-12-17T21:46:46.372989-08:00","closed_at":"2025-12-17T21:46:46.372989-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.19","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.124829-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.19","depends_on_id":"bd-pbh.14","type":"blocks","created_at":"2025-12-17T21:19:11.343558-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.2","title":"Update CHANGELOG.md for 0.30.4","description":"1. Change `## [Unreleased]` to `## [0.30.4] - 2025-12-17`\n2. Add new empty `## [Unreleased]` section at top\n3. Ensure all changes since 0.30.3 are documented\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.956332-08:00","updated_at":"2025-12-17T21:46:46.214512-08:00","closed_at":"2025-12-17T21:46:46.214512-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.2","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.95683-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.20","title":"Update git hooks","description":"Install the updated hooks:\n```bash\nbd hooks install\n```\n\nVerify hook version:\n```bash\ngrep 'bd-hooks-version' .git/hooks/pre-commit\n```\n\n\n```verify\ngrep -q 'bd-hooks-version: 0.30.4' .git/hooks/pre-commit 2\u003e/dev/null || echo 'Hooks may not be installed - verify manually'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.13198-08:00","updated_at":"2025-12-17T21:46:46.381519-08:00","closed_at":"2025-12-17T21:46:46.381519-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.20","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.132306-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.20","depends_on_id":"bd-pbh.17","type":"blocks","created_at":"2025-12-17T21:19:11.352288-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.21","title":"Final release verification","description":"Verify all release artifacts are accessible:\n\n- [ ] `bd --version` shows 0.30.4\n- [ ] `bd version --daemon` shows 0.30.4\n- [ ] GitHub release exists: https://github.com/steveyegge/beads/releases/tag/v0.30.4\n- [ ] `brew upgrade beads \u0026\u0026 bd --version` shows 0.30.4 (if using Homebrew)\n- [ ] `pip show beads-mcp` shows 0.30.4\n- [ ] npm package available at 0.30.4\n- [ ] `bd info --whats-new` shows 0.30.4 notes\n\nRun final checks:\n```bash\nbd --version\nbd version --daemon\npip show beads-mcp | grep Version\nbd info --whats-new\n```\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.141249-08:00","updated_at":"2025-12-17T21:46:46.390985-08:00","closed_at":"2025-12-17T21:46:46.390985-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.141549-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.18","type":"blocks","created_at":"2025-12-17T21:19:11.364839-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.19","type":"blocks","created_at":"2025-12-17T21:19:11.373656-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.20","type":"blocks","created_at":"2025-12-17T21:19:11.382-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.15","type":"blocks","created_at":"2025-12-17T21:19:11.389733-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.16","type":"blocks","created_at":"2025-12-17T21:19:11.398347-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.3","title":"Add 0.30.4 to info.go release notes","description":"Update cmd/bd/info.go versionChanges map with release notes for 0.30.4.\nInclude any workflow-impacting changes for --whats-new output.\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.966781-08:00","updated_at":"2025-12-17T21:46:46.222445-08:00","closed_at":"2025-12-17T21:46:46.222445-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.3","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.967287-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.3","depends_on_id":"bd-pbh.2","type":"blocks","created_at":"2025-12-17T21:19:11.149584-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.4","title":"Update .claude-plugin/plugin.json to 0.30.4","description":"Update version field in .claude-plugin/plugin.json:\n```json\n\"version\": \"0.30.4\"\n```\n\n\n```verify\njq -e '.version == \"0.30.4\"' .claude-plugin/plugin.json\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.976866-08:00","updated_at":"2025-12-17T21:46:46.23159-08:00","closed_at":"2025-12-17T21:46:46.23159-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.4","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.97729-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.5","title":"Update .claude-plugin/marketplace.json to 0.30.4","description":"Update version field in .claude-plugin/marketplace.json:\n```json\n\"version\": \"0.30.4\"\n```\n\n\n```verify\njq -e '.plugins[0].version == \"0.30.4\"' .claude-plugin/marketplace.json\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.985619-08:00","updated_at":"2025-12-17T21:46:46.239122-08:00","closed_at":"2025-12-17T21:46:46.239122-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.5","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.985942-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.6","title":"Update integrations/beads-mcp/pyproject.toml to 0.30.4","description":"Update version in pyproject.toml:\n```toml\nversion = \"0.30.4\"\n```\n\n\n```verify\ngrep -q 'version = \"0.30.4\"' integrations/beads-mcp/pyproject.toml\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.994004-08:00","updated_at":"2025-12-17T21:46:46.246574-08:00","closed_at":"2025-12-17T21:46:46.246574-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.6","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.994376-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.7","title":"Update beads_mcp/__init__.py to 0.30.4","description":"Update __version__ in integrations/beads-mcp/src/beads_mcp/__init__.py:\n```python\n__version__ = \"0.30.4\"\n```\n\n\n```verify\ngrep -q '__version__ = \"0.30.4\"' integrations/beads-mcp/src/beads_mcp/__init__.py\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.005334-08:00","updated_at":"2025-12-17T21:46:46.254885-08:00","closed_at":"2025-12-17T21:46:46.254885-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.7","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.005699-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.8","title":"Update npm-package/package.json to 0.30.4","description":"Update version field in npm-package/package.json:\n```json\n\"version\": \"0.30.4\"\n```\n\n\n```verify\njq -e '.version == \"0.30.4\"' npm-package/package.json\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.014905-08:00","updated_at":"2025-12-17T21:46:46.268821-08:00","closed_at":"2025-12-17T21:46:46.268821-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.8","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.01529-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pbh.9","title":"Update hook templates to 0.30.4","description":"Update bd-hooks-version comment in all 4 hook templates:\n- cmd/bd/templates/hooks/pre-commit\n- cmd/bd/templates/hooks/post-merge\n- cmd/bd/templates/hooks/pre-push\n- cmd/bd/templates/hooks/post-checkout\n\nEach should have:\n```bash\n# bd-hooks-version: 0.30.4\n```\n\n\n```verify\ngrep -l 'bd-hooks-version: 0.30.4' cmd/bd/templates/hooks/* | wc -l | grep -q '4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.0248-08:00","updated_at":"2025-12-17T21:46:46.27561-08:00","closed_at":"2025-12-17T21:46:46.27561-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.9","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.025124-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-pdr2","title":"Consider backwards compatibility for ready() and list() return type change","description":"PR #481 changed the return types of `ready()` and `list()` from `list[Issue]` to `list[IssueMinimal] | CompactedResult`. This is a breaking change for MCP clients.\n\n## Impact Assessment\nBreaking change affects:\n- Any MCP client expecting `list[Issue]` from ready()\n- Any MCP client expecting `list[Issue]` from list()\n- Client code that accesses full Issue fields (description, design, acceptance_criteria, timestamps, dependencies, dependents)\n\n## Current Behavior\n- ready() returns `list[IssueMinimal] | CompactedResult`\n- list() returns `list[IssueMinimal] | CompactedResult`\n- show() still returns full `Issue` (good)\n\n## Considerations\n**Pros of current approach:**\n- Forces clients to use show() for full details (good for context efficiency)\n- Simple mental model (always use show for full data)\n- Documentation warns about this\n\n**Cons:**\n- Clients expecting list[Issue] will break\n- No graceful degradation option\n- No migration period\n\n## Potential Solutions\n1. Add optional parameter `full_details=false` to ready/list (would increase payload)\n2. Create separate tools: ready_minimal/list_minimal + ready_full/list_full\n3. Accept breaking change and document upgrade path (current approach)\n4. Version the MCP server and document migration guide\n\n## Recommendation\nCurrent approach (solution 3) is reasonable if:\n- Changelog clearly documents the breaking change\n- Migration guide provided to clients\n- Error handling is graceful for clients expecting specific fields","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:24:56.460465-08:00","updated_at":"2025-12-14T14:24:56.460465-08:00","dependencies":[{"issue_id":"bd-pdr2","depends_on_id":"bd-otf4","type":"discovered-from","created_at":"2025-12-14T14:24:56.461959-08:00","created_by":"stevey","metadata":"{}"}]} -{"id":"bd-pe4s","title":"JSON test issue","description":"Line 1\nLine 2\nLine 3","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T16:14:36.969074-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-pgcs","title":"Clean up orphaned child issues (bd-cb64c226.*, bd-cbed9619.*)","description":"## Problem\n\nEvery bd command shows warnings about 12 orphaned child issues:\n- bd-cb64c226.1, .6, .8, .9, .10, .12, .13\n- bd-cbed9619.1, .2, .3, .4, .5\n\nThese are hierarchical IDs (parent.child format) where the parent issues no longer exist.\n\n## Impact\n\n- Clutters output of every bd command\n- Confusing for users\n- Indicates incomplete cleanup of deleted parent issues\n\n## Proposed Solution\n\n1. Delete the orphaned issues since their parents no longer exist:\n ```bash\n bd delete bd-cb64c226.1 bd-cb64c226.6 bd-cb64c226.8 ...\n ```\n\n2. Or convert them to top-level issues if they contain useful content\n\n## Investigation Needed\n\n- What were the parent issues bd-cb64c226 and bd-cbed9619?\n- Why were they deleted without their children?\n- Should bd delete cascade to children automatically?","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T23:06:17.240571-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-pzw7","title":"gt handoff deadlock at handoff.go:125","notes":"When running 'gt handoff -m \"message\"' after successful MR submit, go panics with 'fatal error: all goroutines are asleep - deadlock\\!' at handoff.go:125. The shutdown request still appears to be sent successfully but the command crashes. Stack trace shows issue is in runHandoff select statement.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-19T23:22:12.46315-08:00","updated_at":"2025-12-19T23:22:18.613883-08:00"} -{"id":"bd-qioh","title":"Standardize error handling: replace direct fmt.Fprintf+os.Exit with FatalError","description":"Code health review found inconsistent error handling patterns:\n\nPattern A (preferred): FatalError() from errors.go:21-24\nPattern B (inconsistent): Direct fmt.Fprintf(os.Stderr) + os.Exit(1)\n\nAffected files:\n- delete.go:35-49 uses direct pattern\n- create.go:213 ignores error silently\n- Various other commands\n\nFix: Standardize on FatalError() wrapper for consistent error messages and testability.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-16T18:17:19.309394-08:00","updated_at":"2025-12-16T18:17:19.309394-08:00","dependencies":[{"issue_id":"bd-qioh","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.953559-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-qkw9","title":"Run bump-version.sh {{version}}","description":"Run ./scripts/bump-version.sh {{version}} to update version in all files","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:55:58.841424-08:00","updated_at":"2025-12-20T01:18:48.99813-08:00","closed_at":"2025-12-20T01:18:48.99813-08:00","close_reason":"Version bump complete","dependencies":[{"issue_id":"bd-qkw9","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:14.786027-08:00","created_by":"daemon"}]} -{"id":"bd-qqc","title":"Release v{{version}}","description":"Version bump workflow for beads release {{version}}.\n\n## Variables\n- `{{version}}` - The new version number (e.g., 0.31.0)\n- `{{date}}` - Release date (YYYY-MM-DD format)\n\n## Workflow Steps\n1. Kill running daemons\n2. Run tests and linting\n3. Bump version in all files (10 files total)\n4. Update cmd/bd/info.go with release notes\n5. Commit and push version bump\n6. Create and push git tag\n7. Update Homebrew formula\n8. Upgrade local Homebrew installation\n9. Verify installation\n\n## Files Updated by bump-version.sh\n- cmd/bd/version.go\n- .claude-plugin/plugin.json\n- .claude-plugin/marketplace.json\n- integrations/beads-mcp/pyproject.toml\n- integrations/beads-mcp/src/beads_mcp/__init__.py\n- README.md\n- npm-package/package.json\n- cmd/bd/templates/hooks/* (4 files)\n- CHANGELOG.md\n\n## Manual Step Required\n- cmd/bd/info.go - Add versionChanges entry with release notes","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-18T12:59:00.610371-08:00","updated_at":"2025-12-20T01:18:46.71424-08:00","closed_at":"2025-12-20T01:18:46.71424-08:00","close_reason":"Release complete","labels":["template"]} -{"id":"bd-qqc.1","title":"Update version to {{version}} in version.go","description":"Edit cmd/bd/version.go line 17:\n\n```go\nVersion = \"{{version}}\"\n```\n\nVerify with: `grep 'Version =' cmd/bd/version.go`","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:13.887087-08:00","updated_at":"2025-12-18T23:34:18.630067-08:00","closed_at":"2025-12-18T22:41:41.82664-08:00","dependencies":[{"issue_id":"bd-qqc.1","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:13.887655-08:00","created_by":"stevey"}]} -{"id":"bd-qqc.10","title":"Upgrade local Homebrew installation","description":"Upgrade bd via Homebrew:\n\n```bash\nbrew update\nbrew upgrade bd\n/opt/homebrew/bin/bd version # Verify shows {{version}}\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:37.60241-08:00","updated_at":"2025-12-18T23:07:55.686598-08:00","closed_at":"2025-12-18T22:52:00.331429-08:00","dependencies":[{"issue_id":"bd-qqc.10","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:37.603893-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.10","depends_on_id":"bd-qqc.9","type":"blocks","created_at":"2025-12-18T22:43:21.458817-08:00","created_by":"daemon"}]} -{"id":"bd-qqc.11","title":"Update go install bd to {{version}}","description":"Rebuild and install bd to ~/go/bin:\n\n```bash\ngo install ./cmd/bd\n~/go/bin/bd version # Verify shows {{version}}\n```\n\nNote: If ~/go/bin is in PATH before /opt/homebrew/bin, this is the version that runs by default.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:07:55.838013-08:00","updated_at":"2025-12-18T23:09:05.775582-08:00","closed_at":"2025-12-18T23:09:05.775582-08:00","dependencies":[{"issue_id":"bd-qqc.11","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T23:07:55.838432-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.11","depends_on_id":"bd-qqc.10","type":"blocks","created_at":"2025-12-18T23:08:19.629947-08:00","created_by":"daemon"}]} -{"id":"bd-qqc.12","title":"Restart daemon with {{version}}","description":"Restart the bd daemon to pick up new version:\n\n```bash\nbd daemon --stop\nbd daemon --start\nbd daemon --health # Verify Version: {{version}}\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:08:04.155448-08:00","updated_at":"2025-12-18T23:09:05.777375-08:00","closed_at":"2025-12-18T23:09:05.777375-08:00","dependencies":[{"issue_id":"bd-qqc.12","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T23:08:04.155832-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.12","depends_on_id":"bd-qqc.11","type":"blocks","created_at":"2025-12-18T23:08:19.779897-08:00","created_by":"daemon"}]} -{"id":"bd-qqc.13","title":"Upgrade beads-mcp to {{version}}","description":"Upgrade the MCP server via pip:\n\n```bash\npip install --upgrade beads-mcp\npip show beads-mcp | grep Version # Verify {{version}}\n```\n\nNote: Restart Claude Code or MCP session to use new version.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:08:04.318233-08:00","updated_at":"2025-12-18T23:09:05.77824-08:00","closed_at":"2025-12-18T23:09:05.77824-08:00","dependencies":[{"issue_id":"bd-qqc.13","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T23:08:04.318709-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.13","depends_on_id":"bd-qqc.11","type":"blocks","created_at":"2025-12-18T23:08:19.927825-08:00","created_by":"daemon"}]} -{"id":"bd-qqc.2","title":"Add {{version}} to versionChanges in info.go","description":"Add new entry at the TOP of versionChanges array in cmd/bd/info.go:\n\n```go\n{\n Version: \"{{version}}\",\n Date: \"{{date}}\",\n Changes: []string{\n // Add notable changes here\n },\n},\n```\n\nCopy changes from CHANGELOG.md [Unreleased] section.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:27.032117-08:00","updated_at":"2025-12-18T23:34:18.631996-08:00","closed_at":"2025-12-18T22:41:41.836137-08:00","dependencies":[{"issue_id":"bd-qqc.2","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:27.032746-08:00","created_by":"stevey"}]} -{"id":"bd-qqc.3","title":"Update CHANGELOG.md for {{version}}","description":"In CHANGELOG.md:\n\n1. Change `## [Unreleased]` section header to `## [{{version}}] - {{date}}`\n2. Add new empty `## [Unreleased]` section above it\n3. Review and clean up the changes list\n\nFormat:\n```markdown\n## [Unreleased]\n\n## [{{version}}] - {{date}}\n\n### Added\n- ...\n\n### Changed\n- ...\n\n### Fixed\n- ...\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:39.738561-08:00","updated_at":"2025-12-18T23:34:18.629213-08:00","closed_at":"2025-12-18T22:41:41.846609-08:00","dependencies":[{"issue_id":"bd-qqc.3","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:39.739138-08:00","created_by":"stevey"}]} -{"id":"bd-qqc.4","title":"Run tests and verify build","description":"Run the test suite to verify nothing is broken:\n\n```bash\n./scripts/test.sh\n```\n\nOr manually:\n```bash\ngo build ./cmd/bd/...\ngo test ./...\n```\n\nFix any failures before proceeding.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:52.308314-08:00","updated_at":"2025-12-18T23:34:18.631671-08:00","closed_at":"2025-12-18T22:41:41.856318-08:00","dependencies":[{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:52.308943-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc.1","type":"blocks","created_at":"2025-12-18T13:00:40.62142-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc.2","type":"blocks","created_at":"2025-12-18T13:00:45.820132-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc.3","type":"blocks","created_at":"2025-12-18T13:00:51.014568-08:00","created_by":"stevey"}]} -{"id":"bd-qqc.5","title":"Commit release v{{version}}","description":"Stage and commit the version bump:\n\n```bash\ngit add cmd/bd/version.go cmd/bd/info.go CHANGELOG.md\ngit commit -m \"release: v{{version}}\"\n```\n\nDo NOT push yet - tag first.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T13:00:04.097628-08:00","updated_at":"2025-12-18T23:34:18.630946-08:00","closed_at":"2025-12-18T22:41:41.864839-08:00","dependencies":[{"issue_id":"bd-qqc.5","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T13:00:04.098265-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.5","depends_on_id":"bd-qqc.4","type":"blocks","created_at":"2025-12-18T13:01:02.275008-08:00","created_by":"stevey"}]} -{"id":"bd-qqc.6","title":"Create git tag v{{version}}","description":"Create the release tag:\n\n```bash\ngit tag v{{version}}\n```\n\nVerify: `git tag | grep {{version}}`","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T13:00:15.495086-08:00","updated_at":"2025-12-18T23:34:18.632308-08:00","closed_at":"2025-12-18T22:41:41.874099-08:00","dependencies":[{"issue_id":"bd-qqc.6","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T13:00:15.496036-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.6","depends_on_id":"bd-qqc.5","type":"blocks","created_at":"2025-12-18T13:01:07.478315-08:00","created_by":"stevey"}]} -{"id":"bd-qqc.7","title":"Push release v{{version}} to remote","description":"Push the commit and tag:\n\n```bash\ngit push \u0026\u0026 git push --tags\n```\n\nVerify on GitHub that the tag appears in releases.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T13:00:26.933082-08:00","updated_at":"2025-12-18T23:34:18.630538-08:00","closed_at":"2025-12-18T22:41:41.882956-08:00","dependencies":[{"issue_id":"bd-qqc.7","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T13:00:26.933687-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.7","depends_on_id":"bd-qqc.6","type":"blocks","created_at":"2025-12-18T13:01:12.711161-08:00","created_by":"stevey"}]} -{"id":"bd-qqc.8","title":"Create and push git tag v{{version}}","description":"Create the release tag and push it:\n\n```bash\ngit tag v{{version}}\ngit push origin v{{version}}\n```\n\nThis triggers the GoReleaser GitHub Action to build release binaries.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:34.659927-08:00","updated_at":"2025-12-18T22:47:14.054232-08:00","closed_at":"2025-12-18T22:47:14.054232-08:00","dependencies":[{"issue_id":"bd-qqc.8","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:34.660248-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.8","depends_on_id":"bd-vgi5","type":"blocks","created_at":"2025-12-18T22:43:21.209529-08:00","created_by":"daemon"}]} -{"id":"bd-qqc.9","title":"Update Homebrew formula","description":"Update the Homebrew tap with new version:\n\n```bash\n./scripts/update-homebrew.sh {{version}}\n```\n\nThis script waits for GitHub Actions to complete (~5 min), then updates the formula with new SHA256 hashes.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:35.815096-08:00","updated_at":"2025-12-18T22:51:07.863862-08:00","closed_at":"2025-12-18T22:51:07.863862-08:00","dependencies":[{"issue_id":"bd-qqc.9","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:35.816752-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.9","depends_on_id":"bd-qqc.8","type":"blocks","created_at":"2025-12-18T22:43:21.332955-08:00","created_by":"daemon"}]} -{"id":"bd-r46","title":"Support --reason flag in daemon mode for reopen command","description":"The reopen.go command has a TODO at line 61 to add reason as a comment once RPC supports AddComment. Currently --reason flag is ignored in daemon mode with a warning.","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-21T18:55:10.773626-05:00","updated_at":"2025-11-21T18:55:10.773626-05:00"} -{"id":"bd-r6a","title":"Redesign workflow system: templates as native Beads","description":"## Problem\n\nThe current workflow system (YAML templates in cmd/bd/templates/workflows/) is architecturally flawed:\n\n1. **Out-of-band data plane** - YAML files are a parallel system outside Beads itself\n2. **Heavyweight DSL** - YAML is gross; even TOML would have been better, but neither is ideal\n3. **Not graph-native** - Beads IS already a dependency graph with priorities, so why reinvent it?\n4. **Can't use bd commands on templates** - They're opaque YAML, not viewable/editable Beads\n\n## The Right Design\n\n**Templates should be Beads themselves.**\n\nA \"workflow template\" should be:\n- An epic marked as a template (via label, type, or prefix like `tpl-`)\n- Child issues with dependencies between them (using normal bd dep)\n- Titles and descriptions containing `{{variable}}` placeholders\n- Normal priorities that control serialization order\n\n\"Instantiation\" becomes:\n1. Clone the template subgraph (epic + children + dependencies)\n2. Substitute variables in titles/descriptions\n3. Generate new IDs for all cloned issues\n4. Return the new epic ID\n\n## Benefits\n\n- **No YAML** - Templates are just Beads\n- **Use existing tools** - `bd show`, `bd edit`, `bd dep` work on templates\n- **Graph-native** - Dependencies are real Beads dependencies\n- **Simpler codebase** - Remove all the YAML parsing/workflow code\n- **Composable** - Templates can reference other templates\n\n## Tasks\n\n1. Delete the YAML workflow system code (revert recent push + remove existing workflow code)\n2. Design template marking convention (label? type? id prefix?)\n3. Implement `bd template create` or `bd clone --as-template`\n4. Implement `bd template instantiate \u003ctemplate-id\u003e --var key=value`\n5. Migrate version-bump workflow to native Beads template\n6. Update documentation","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-17T22:41:57.359643-08:00","updated_at":"2025-12-18T17:42:26.000769-08:00","closed_at":"2025-12-18T13:47:04.632525-08:00"} -{"id":"bd-r6a.1","title":"Revert/remove YAML workflow system","description":"Revert the recent commit and remove all YAML workflow code:\n\n1. `git revert aae8407a` (the commit we just pushed with workflow fixes)\n2. Remove `cmd/bd/templates/workflows/` directory\n3. Remove workflow.go or gut it to minimal stub\n4. Remove WorkflowTemplate types from internal/types/workflow.go\n5. Remove any workflow-related RPC handlers\n\nKeep only minimal scaffolding if needed for the new template system.","status":"closed","issue_type":"task","created_at":"2025-12-17T22:42:07.339684-08:00","updated_at":"2025-12-17T22:46:08.606088-08:00","closed_at":"2025-12-17T22:46:08.606088-08:00","dependencies":[{"issue_id":"bd-r6a.1","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:42:07.340117-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-r6a.2","title":"Implement subgraph cloning with variable substitution","description":"Core implementation of template instantiation:\n\n1. Add `bd template instantiate \u003ctemplate-id\u003e [--var key=value]...` command\n2. Implement subgraph loading:\n - Load template epic\n - Recursively load all children (and their children)\n - Load all dependencies between issues in the subgraph\n3. Implement variable substitution:\n - Scan titles and descriptions for `{{name}}` patterns\n - Replace with provided values\n - Error on missing required variables (or prompt interactively)\n4. Implement cloning:\n - Generate new IDs for all issues\n - Create cloned issues with substituted text\n - Remap and create dependencies\n5. Return the new epic ID\n\nConsider adding `--dry-run` flag to preview what would be created.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T22:43:25.179848-08:00","updated_at":"2025-12-17T23:02:29.034444-08:00","closed_at":"2025-12-17T23:02:29.034444-08:00","dependencies":[{"issue_id":"bd-r6a.2","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:25.180286-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-r6a.2","depends_on_id":"bd-r6a.1","type":"blocks","created_at":"2025-12-17T22:44:03.15413-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-r6a.3","title":"Create version-bump template as native Beads","description":"Migrate the version-bump workflow from YAML to a native Beads template:\n\n1. Create epic with template label: Release {{version}}\n2. Create child tasks for each step (update version files, changelog, commit, push, publish)\n3. Set up dependencies between tasks\n4. Add verification commands in task descriptions\n\nThis serves as both migration and validation of the new system.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T22:43:40.694931-08:00","updated_at":"2025-12-18T17:42:26.001149-08:00","closed_at":"2025-12-18T13:02:09.039457-08:00","dependencies":[{"issue_id":"bd-r6a.3","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:40.695392-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-r6a.3","depends_on_id":"bd-r6a.2","type":"blocks","created_at":"2025-12-17T22:44:03.311902-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-r6a.4","title":"Add bd template list command","description":"Add a convenience command to list available templates:\n\nbd template list\n\nThis is equivalent to 'bd list --label=template' but more discoverable.\nCould also show variable placeholders found in each template.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T22:43:47.525316-08:00","updated_at":"2025-12-17T23:02:45.700582-08:00","closed_at":"2025-12-17T23:02:45.700582-08:00","dependencies":[{"issue_id":"bd-r6a.4","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:47.525743-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-r6a.4","depends_on_id":"bd-r6a.2","type":"blocks","created_at":"2025-12-17T22:44:03.474353-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-r6a.5","title":"Update documentation for template system","description":"Update AGENTS.md and help text to document the new template system:\n\n- How to create a template (epic + template label + child issues)\n- How to define variables (just use {{name}} placeholders)\n- How to instantiate (bd template instantiate)\n- Migration from YAML workflows (if any users had custom ones)","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-17T22:43:55.461345-08:00","updated_at":"2025-12-18T17:42:26.001474-08:00","closed_at":"2025-12-18T13:46:53.446262-08:00","dependencies":[{"issue_id":"bd-r6a.5","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:55.461763-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-r6a.5","depends_on_id":"bd-r6a.3","type":"blocks","created_at":"2025-12-17T22:44:03.632404-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-r6a.5","depends_on_id":"bd-r6a.4","type":"blocks","created_at":"2025-12-17T22:44:03.788517-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-rgyd","title":"Split internal/storage/sqlite/queries.go (1586 lines)","description":"Code health review found queries.go is too large at 1586 lines with:\n\n- Issue scanning logic duplicated between transaction.go and queries.go\n- Timestamp defensive fixes duplicated in CreateIssue, CreateIssues, batch_ops.go\n- Multiple similar patterns that should be consolidated\n\nAlso: transaction.go at 1284 lines, dependencies.go at 893 lines\n\nRecommendation:\n1. Extract common scanning into shared function\n2. Consolidate timestamp defensive fixes\n3. Split queries.go by domain (CRUD, search, batch, events)","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-16T18:17:23.85869-08:00","updated_at":"2025-12-16T18:17:23.85869-08:00","dependencies":[{"issue_id":"bd-rgyd","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.062038-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-rp4o","title":"Deleted issues resurrect during bd sync (tombstones not propagating)","description":"## Problem\n\nWhen issues are deleted with bd delete --force, they get deleted from the local DB but resurrect during the next bd sync.\n\n## Reproduction\n\n1. Observe orphan warnings (bd-cb64c226.*, bd-cbed9619.*)\n2. Delete them: bd delete bd-cb64c226.1 ... --force\n3. Run bd sync\n4. Orphan warnings reappear - issues were resurrected!\n\n## Root Cause Hypothesis\n\nThe sync branch workflow (beads-sync) has the old state before deletions. When bd sync pulls from beads-sync and copies JSONL to main, the deleted issues are re-imported.\n\nTombstones may not be properly:\n1. Written to beads-sync during export\n2. Propagated during pull/merge\n3. Honored during import\n\n## Related\n\n- bd-7b7h: chicken-and-egg sync.branch bug (same workflow)\n- bd-ncwo: ID-based fallback matching to prevent ghost resurrection\n\n## Files to Investigate\n\n- cmd/bd/sync.go (export/import flow)\n- internal/syncbranch/worktree.go (PullFromSyncBranch, copyJSONLToMainRepo)\n- internal/importer/ (tombstone handling)","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T23:09:43.072696-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-rupw","title":"Run bump-version.sh 0.30.7","description":"Run ./scripts/bump-version.sh 0.30.7 to update version in all files","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649647-08:00","updated_at":"2025-12-19T22:57:31.512956-08:00","closed_at":"2025-12-19T22:57:31.512956-08:00","close_reason":"Already ran bump-version.sh","dependencies":[{"issue_id":"bd-rupw","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.653475-08:00","created_by":"stevey"}]} -{"id":"bd-s0qf","title":"GH#405: Fix prefix parsing with hyphens - multi-hyphen prefixes parsed incorrectly","description":"Fixed: ExtractIssuePrefix was falling back to first-hyphen for word-like suffixes, breaking multi-hyphen prefixes like 'hacker-news' and 'me-py-toolkit'.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:13:56.951359-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-s2t","title":"wish: a 'continue' or similar cmd/flag which means alter last issue","description":"so many time I create an issue and then have another thought: 'oh, before I did X and it crashed there was ZZZ happening' or 'actually that is P4 not P2'. It would be nice if when `bd {cmd}` is used without a {title} or {id} it just adds or updates the most recently touched issue.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-08T06:46:37.529160416-07:00","updated_at":"2025-12-08T06:46:37.529160416-07:00"} -{"id":"bd-sh4c","title":"Improve test coverage for cmd/bd/setup (28.4% ā†’ 50%)","description":"The setup package has only 28.4% test coverage. Setup commands are critical for first-time user experience.\n\nCurrent coverage: 28.4%\nTarget coverage: 50%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:04.409346-08:00","updated_at":"2025-12-13T21:01:18.98833-08:00"} -{"id":"bd-si4g","title":"Verify release artifacts","description":"Check GitHub releases page - binaries for darwin/linux/windows should be available","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:04.183029-08:00","updated_at":"2025-12-20T00:25:52.720816-08:00","closed_at":"2025-12-20T00:25:52.720816-08:00","close_reason":"Release v0.30.7 verified - all platform artifacts published","dependencies":[{"issue_id":"bd-si4g","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.173619-08:00","created_by":"daemon"},{"issue_id":"bd-si4g","depends_on_id":"bd-otli","type":"blocks","created_at":"2025-12-19T22:56:23.428507-08:00","created_by":"daemon"}]} -{"id":"bd-siz1","title":"GH#532: bd sync circular error (suggests running bd sync)","description":"bd sync error message recommends running bd sync to fix the bd sync error. Fix error handling to provide useful guidance. See GitHub issue #532.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:04:00.543573-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-su45","title":"Protect pinned issues from bd cleanup/compact","description":"Update bd cleanup and bd compact to never delete pinned issues, even if they are closed. Pinned issues should persist indefinitely as reference material.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:46.204783-08:00","updated_at":"2025-12-19T17:43:35.712617-08:00","closed_at":"2025-12-19T00:43:04.06406-08:00","dependencies":[{"issue_id":"bd-su45","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.64582-08:00","created_by":"daemon"},{"issue_id":"bd-su45","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.857586-08:00","created_by":"daemon"}]} -{"id":"bd-sumr","title":"Merge: bd-t4sb","description":"branch: polecat/capable\ntarget: main\nsource_issue: bd-t4sb\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:22:21.343724-08:00","updated_at":"2025-12-19T23:22:21.343724-08:00"} -{"id":"bd-svb5","title":"GH#505: Add bd reset/wipe command","description":"Add command to cleanly reset/wipe beads database. User reports painful manual process to start fresh. See GitHub issue #505.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:03:42.160966-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} -{"id":"bd-t4sb","title":"Work on beads-d8h: Fix prefix mismatch false positive wit...","description":"Work on beads-d8h: Fix prefix mismatch false positive with multi-hyphen prefixes like 'asianops-audit-' (GH#422). When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:19.545069-08:00","updated_at":"2025-12-20T00:26:12.606657-08:00","closed_at":"2025-12-19T23:21:45.471711-08:00"} -{"id":"bd-t4u1","title":"False positive detection by Kaspersky Antivirus (Trojan)","description":"Kaspersky Antivirus falsely detects beads (bd.exe v0.23.1) as a Trojan (PDM:Trojan.Win32.Generic) and removes it.\nEvent: Malicious object detected\nComponent: System Watcher\nObject name: bd.exe\n","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-20T18:56:12.498187-05:00","updated_at":"2025-11-20T18:56:12.498187-05:00"} -{"id":"bd-tbz3","title":"bd init UX Improvements","description":"bd init leaves users with incomplete setup, requiring manual bd doctor --fix. Issues found: (1) git hooks not installed if user declines prompt, (2) no auto-migration when CLI is upgraded, (3) stale merge driver configs from old versions. Fix by making bd init more robust with better defaults and auto-migration.","status":"open","priority":1,"issue_type":"epic","created_at":"2025-11-21T23:16:00.333543-08:00","updated_at":"2025-11-21T23:16:37.811233-08:00"} -{"id":"bd-tggf","title":"Code Health Review Dec 2025: Technical Debt Cleanup","description":"Epic grouping technical debt identified in the Dec 16, 2025 code health review.\n\n## Overall Health Grade: B (Solid foundation, needs cleanup)\n\n### P1 (High Priority):\n- bd-74w1: Consolidate duplicate path-finding utilities\n- bd-b6xo: Remove/fix ClearDirtyIssues() race condition\n- bd-b3og: Fix TestImportBugIntegration deadlock\n\n### P2 (Medium Priority):\n- bd-05a8: Split large files (doctor.go, sync.go)\n- bd-qioh: Standardize error handling patterns\n- bd-rgyd: Split queries.go (1586 lines)\n- bd-9g1z: Fix/remove TestFindJSONLPathDefault\n\n### P3 (Low Priority):\n- bd-ork0: Add comments to 30+ ignored errors\n- bd-4nqq: Remove dead test code in info_test.go\n- bd-dhza: Reduce global state in main.go\n\n## Key Areas:\n1. Code duplication in path utilities\n2. Large monolithic files (5 files \u003e1000 lines)\n3. Global state (25+ variables, 3 deprecated)\n4. Silent error suppression (30+ instances)\n5. Test gaps and dead test code\n6. Atomicity risks in batch operations","status":"open","priority":2,"issue_type":"epic","created_at":"2025-12-16T18:18:58.115507-08:00","updated_at":"2025-12-16T18:21:50.561709-08:00"} -{"id":"bd-thgk","title":"Improve test coverage for internal/compact (18.2% ā†’ 70%)","description":"The compact package has only 18.2% test coverage. This is a core package handling issue compaction and should have at least 70% coverage.\n\nKey functions needing tests:\n- runCompactSingle (0%)\n- runCompactAll (0%)\n- runCompactRPC (0%)\n- runCompactStatsRPC (0%)\n- runCompactAnalyze (0%)\n- runCompactApply (0%)\n- pruneDeletionsManifest (0%)\n\nCurrent coverage: 18.2%\nTarget coverage: 70%","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-13T20:42:58.455767-08:00","updated_at":"2025-12-13T21:01:15.070551-08:00"} -{"id":"bd-tm2p","title":"Polecats get stuck on interactive shell prompts (cp/mv/rm -i)","description":"During swarm operations, polecats frequently get stuck waiting for interactive prompts from shell commands like:\n- cp prompting 'overwrite file? (y/n)'\n- mv prompting 'overwrite file? (y/n)' \n- rm prompting 'remove file?'\n\nThis happens because macOS aliases or shell configs may have -i flags set by default.\n\nRoot cause: Claude Code runs commands that trigger interactive confirmation prompts, but cannot respond to them, causing the agent to hang indefinitely.\n\nObserved in: Multiple polecats during GH issues swarm (Dec 2024)\n- Derrick, Roustabout, Prospector, Warboy all got stuck on y/n prompts\n\nSuggested fixes:\n1. AGENTS.md should instruct agents to always use -f flag with cp/mv/rm\n2. Polecat startup could set shell aliases to use non-interactive versions\n3. bd prime hook could include guidance about non-interactive commands\n4. Consider detecting stuck prompts and auto-recovering","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-14T16:51:24.572271-08:00","updated_at":"2025-12-17T23:13:40.536312-08:00","closed_at":"2025-12-17T19:13:04.074424-08:00"} -{"id":"bd-toy3","title":"Test hook","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T18:33:39.717036-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-tvu3","title":"Improve test coverage for internal/beads (48.1% ā†’ 70%)","description":"The beads package is a core package with 48.1% coverage. As the primary package for issue management, it should have at least 70% coverage.\n\nCurrent coverage: 48.1%\nTarget coverage: 70%","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-13T20:42:59.739142-08:00","updated_at":"2025-12-13T21:01:14.874359-08:00"} -{"id":"bd-u0g9","title":"GH#405: Prefix parsing with hyphens treats first segment as prefix","description":"Prefix me-py-toolkit gets parsed as just me- when detecting mismatches. Fix prefix parsing to handle multi-hyphen prefixes. See GitHub issue #405.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:18.354066-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-umbf","title":"Design contributor namespace isolation for beads pollution prevention","description":"## Problem\n\nWhen contributors work on beads-the-project using beads-the-tool, their personal work-tracking issues leak into PRs. The .beads/issues.jsonl is intentionally tracked (it's the project's issue database), but contributors' local issues pollute the diff.\n\nThis is a recursion problem unique to self-hosting projects.\n\n## Possible Solutions to Explore\n\n1. **Contributor namespaces** - Each contributor gets a private prefix (e.g., `bd-steve-xxxx`) that's gitignored or filtered\n2. **Separate database** - Contributors use BEADS_DIR pointing elsewhere for personal tracking\n3. **Issue ownership/visibility flags** - Mark issues as \"local-only\" vs \"project\"\n4. **Prefix-based filtering** - Configure which prefixes are committed vs ignored\n\n## Design Considerations\n\n- Should be zero-friction for contributors (no manual setup)\n- Must not break existing workflows\n- Needs to work with sync/collaboration features\n- Consider: what if a \"personal\" issue graduates to \"project\" issue?\n\n## Expansion Needed\n\nThis is a placeholder. Needs detailed design exploration before implementation.","status":"open","priority":2,"issue_type":"feature","created_at":"2025-12-13T18:00:29.638743-08:00","updated_at":"2025-12-13T18:00:41.345673-08:00"} -{"id":"bd-uqfn","title":"Work on beads-wkt: Output control parameters for MCP tool...","description":"Work on beads-wkt: Output control parameters for MCP tools (GH#622). Add brief, fields, max_description_length params to ready/list/show. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:57:10.675535-08:00","updated_at":"2025-12-20T00:26:12.606293-08:00","closed_at":"2025-12-19T23:28:25.362931-08:00"} +{"id":"bd-kwro.4","title":"Graph Link: duplicates for deduplication","description":"Implement duplicates link type for marking issues as duplicates.\n\nNew command:\n- bd duplicate \u003cid\u003e --of \u003ccanonical\u003e - marks id as duplicate of canonical\n- Auto-closes the duplicate issue\n\nQuery support:\n- bd show \u003cid\u003e shows 'Duplicate of: \u003ccanonical\u003e'\n- bd list --duplicates shows all duplicate pairs\n\nStorage:\n- duplicates column pointing to canonical issue ID\n\nEssential for large issue databases with many similar reports.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:36.257223-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-2oo.3","title":"Update all code to use dependencies API for edges","description":"Find and update all code that reads/writes:\n- replies_to field -\u003e use dependency API\n- relates_to field -\u003e use dependency API\n- duplicate_of field -\u003e use dependency API\n- superseded_by field -\u003e use dependency API\n\nCommands affected: bd mail, bd relate, bd duplicate, bd supersede, bd show, etc.","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:01.317006-08:00","updated_at":"2025-12-18T02:49:10.59233-08:00","closed_at":"2025-12-18T02:49:10.59233-08:00","dependencies":[{"issue_id":"bd-2oo.3","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:01.31856-08:00","created_by":"daemon"}]} +{"id":"bd-rgd7","title":"Update CHANGELOG.md with release notes","description":"Add release notes for 0.32.1: MCP output control params (#667), pin field fix","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:16.031879-08:00","updated_at":"2025-12-20T21:54:07.982164-08:00","closed_at":"2025-12-20T21:54:07.982164-08:00","dependencies":[{"issue_id":"bd-rgd7","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:16.034926-08:00","created_by":"daemon"}]} +{"id":"bd-zwtq","title":"Run bd doctor at end of bd init to verify setup","description":"Run bd doctor diagnostics at end of bd init (after line 398 in init.go). If issues found, warn user immediately: 'āš  Setup incomplete. Run bd doctor --fix to complete setup.' Catches configuration problems before user encounters them in normal workflow.","status":"open","priority":1,"issue_type":"feature","created_at":"2025-11-21T23:16:09.596778-08:00","updated_at":"2025-11-21T23:16:27.781976-08:00","dependencies":[{"issue_id":"bd-zwtq","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:09.597617-08:00","created_by":"daemon"}]} +{"id":"bd-pdr2","title":"Consider backwards compatibility for ready() and list() return type change","description":"PR #481 changed the return types of `ready()` and `list()` from `list[Issue]` to `list[IssueMinimal] | CompactedResult`. This is a breaking change for MCP clients.\n\n## Impact Assessment\nBreaking change affects:\n- Any MCP client expecting `list[Issue]` from ready()\n- Any MCP client expecting `list[Issue]` from list()\n- Client code that accesses full Issue fields (description, design, acceptance_criteria, timestamps, dependencies, dependents)\n\n## Current Behavior\n- ready() returns `list[IssueMinimal] | CompactedResult`\n- list() returns `list[IssueMinimal] | CompactedResult`\n- show() still returns full `Issue` (good)\n\n## Considerations\n**Pros of current approach:**\n- Forces clients to use show() for full details (good for context efficiency)\n- Simple mental model (always use show for full data)\n- Documentation warns about this\n\n**Cons:**\n- Clients expecting list[Issue] will break\n- No graceful degradation option\n- No migration period\n\n## Potential Solutions\n1. Add optional parameter `full_details=false` to ready/list (would increase payload)\n2. Create separate tools: ready_minimal/list_minimal + ready_full/list_full\n3. Accept breaking change and document upgrade path (current approach)\n4. Version the MCP server and document migration guide\n\n## Recommendation\nCurrent approach (solution 3) is reasonable if:\n- Changelog clearly documents the breaking change\n- Migration guide provided to clients\n- Error handling is graceful for clients expecting specific fields","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:24:56.460465-08:00","updated_at":"2025-12-14T14:24:56.460465-08:00","dependencies":[{"issue_id":"bd-pdr2","depends_on_id":"bd-otf4","type":"discovered-from","created_at":"2025-12-14T14:24:56.461959-08:00","created_by":"stevey"}]} +{"id":"bd-otli","title":"Wait for CI to pass","description":"Monitor GitHub Actions - all checks must pass before release artifacts are built","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:03.022281-08:00","updated_at":"2025-12-20T00:49:51.928591-08:00","closed_at":"2025-12-20T00:25:52.635223-08:00","dependencies":[{"issue_id":"bd-otli","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.097564-08:00","created_by":"daemon"},{"issue_id":"bd-otli","depends_on_id":"bd-7tuu","type":"blocks","created_at":"2025-12-19T22:56:23.360436-08:00","created_by":"daemon"}]} +{"id":"bd-fi05","title":"bd sync fails with orphaned issues and duplicate ID conflict","description":"After fixing the deleted_at TEXT column scanning bug (commit 18b1eb2), bd sync still fails with two issues:\n\n1. Orphan Detection Warning: 12 orphaned child issues whose parents no longer exist (bd-cb64c226.* and bd-cbed9619.*)\n\n2. Import Failure: UNIQUE constraint failed for bd-360 - this tombstone exists in both DB and JSONL\n\nError: \"Import failed: error creating depth-0 issues: bulk insert issues: failed to insert issue bd-360: sqlite3: constraint failed: UNIQUE constraint failed: issues.id\"\n\nFix options:\n- Delete orphaned child issues with bd delete\n- Resolve bd-360 duplicate (in deletions.jsonl vs tombstone in DB)\n- Reset sync branch: git branch -f beads-sync main \u0026\u0026 git push --force-with-lease origin beads-sync","notes":"Fixed tombstone constraint violation bug. When deleting closed issues, the CHECK constraint (status = 'closed') = (closed_at IS NOT NULL) was violated because CreateTombstone didn't clear closed_at. Fix: set closed_at = NULL in tombstone creation SQL.\n\nThe sync data corruption (orphaned issues in beads-sync branch) requires manual cleanup: reset sync branch with 'git branch -f beads-sync main \u0026\u0026 git push --force-with-lease origin beads-sync'","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-13T07:14:33.831346-08:00","updated_at":"2025-12-13T10:50:48.545465-08:00","closed_at":"2025-12-13T07:30:33.843986-08:00"} +{"id":"bd-95k8","title":"Pinned field available in beads v0.37.0","description":"Hey max,\n\nHeads up on your mail overhaul work:\n\n1. **Pinned field is available** - beads v0.37.0 (released by dave earlier) includes the pinned field on issues. You'll want to add this to BeadsMessage in types.go.\n\n2. **Database migration** - Check if existing .beads databases need migration to support the pinned field. Run `bd doctor` to see if it flags anything.\n\n3. **Sorting task** - Once you have the pinned field, gt-ngu1 (pinned beads first in mail inbox) needs implementing. Since messages now come from `bd list --type=message`, you'll need to either:\n - Sort in listBeads() after fetching, or\n - Ensure bd list returns pinned items first (may already do this?)\n\nCheck what version of bd you're building against.\n\n-- Mayor","status":"open","priority":2,"issue_type":"message","created_at":"2025-12-20T17:51:57.315956-08:00","updated_at":"2025-12-20T17:51:57.315956-08:00"} +{"id":"bd-c83r","title":"Prevent multiple daemons from running on the same repo","description":"Multiple bd daemons running on the same repo clone causes race conditions and data corruption risks.\n\n**Problem:**\n- Nothing prevents spawning multiple daemons for the same repository\n- Multiple daemons watching the same files can conflict during sync operations\n- Observed: 4 daemons running simultaneously caused sync race condition\n\n**Solution:**\nImplement daemon singleton enforcement per repo:\n1. Use a lock file (e.g., .beads/.daemon.lock) with PID\n2. On daemon start, check if lock exists and process is alive\n3. If stale lock (dead PID), clean up and acquire lock\n4. If active daemon exists, either:\n - Exit with message 'daemon already running (PID xxx)'\n - Or offer --replace flag to kill existing and take over\n5. Release lock on graceful shutdown\n\n**Edge cases to handle:**\n- Daemon crashes without releasing lock (stale PID detection)\n- Multiple repos in same directory tree (each repo gets own lock)\n- Race between two daemons starting simultaneously (atomic lock acquisition)","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-13T06:37:23.377131-08:00","updated_at":"2025-12-16T01:14:49.50347-08:00","closed_at":"2025-12-14T17:34:14.990077-08:00"} +{"id":"bd-9cdc","title":"Update docs for import bug fix","description":"Update AGENTS.md, README.md, TROUBLESHOOTING.md with import.orphan_handling config documentation. Document resurrection behavior, tombstones, config modes. Add troubleshooting section for import failures with deleted parents.","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-04T12:32:30.770415-08:00","updated_at":"2025-11-04T12:32:30.770415-08:00"} +{"id":"bd-pbh.2","title":"Update CHANGELOG.md for 0.30.4","description":"1. Change `## [Unreleased]` to `## [0.30.4] - 2025-12-17`\n2. Add new empty `## [Unreleased]` section at top\n3. Ensure all changes since 0.30.3 are documented\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.956332-08:00","updated_at":"2025-12-17T21:46:46.214512-08:00","closed_at":"2025-12-17T21:46:46.214512-08:00","dependencies":[{"issue_id":"bd-pbh.2","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.95683-08:00","created_by":"daemon"}]} +{"id":"bd-9l0h","title":"Run tests and linting","description":"go test -short ./... \u0026\u0026 golangci-lint run ./...","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:19.527602-08:00","updated_at":"2025-12-20T21:55:29.660914-08:00","closed_at":"2025-12-20T21:55:29.660914-08:00","dependencies":[{"issue_id":"bd-9l0h","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:19.529203-08:00","created_by":"daemon"},{"issue_id":"bd-9l0h","depends_on_id":"bd-gocx","type":"blocks","created_at":"2025-12-20T21:53:29.753682-08:00","created_by":"daemon"}]} +{"id":"bd-pbh.19","title":"Install 0.30.4 MCP server locally","description":"Upgrade the MCP server (after PyPI publish):\n```bash\npip install --upgrade beads-mcp\n# OR if using uv:\nuv tool upgrade beads-mcp\n```\n\nVerify:\n```bash\npip show beads-mcp | grep Version\n```\n\n\n```verify\npip show beads-mcp 2\u003e/dev/null | grep -q 'Version: 0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.124496-08:00","updated_at":"2025-12-17T21:46:46.372989-08:00","closed_at":"2025-12-17T21:46:46.372989-08:00","dependencies":[{"issue_id":"bd-pbh.19","depends_on_id":"bd-pbh.14","type":"blocks","created_at":"2025-12-17T21:19:11.343558-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.19","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.124829-08:00","created_by":"daemon"}]} +{"id":"bd-abjw","title":"Consider consolidating config.yaml parsing into shared utility","description":"Multiple places parse config.yaml with custom structs:\n\n1. **autoimport.go:148** - `localConfig{SyncBranch}`\n2. **main.go:310** - strings.Contains for no-db (fragile, see bd-r6k2)\n3. **doctor.go:863** - strings.Contains for no-db (fragile, see bd-r6k2)\n4. **internal/config/config.go** - Uses viper (but caches at startup, problematic for tests)\n\nConsider creating a shared utility in `internal/configfile/` or extending the viper config:\n\n```go\n// internal/configfile/yaml.go\ntype YAMLConfig struct {\n SyncBranch string `yaml:\"sync-branch\"`\n NoDb bool `yaml:\"no-db\"`\n IssuePrefix string `yaml:\"issue-prefix\"`\n Author string `yaml:\"author\"`\n}\n\nfunc LoadYAML(beadsDir string) (*YAMLConfig, error) {\n // Parse config.yaml with proper YAML library\n}\n```\n\nBenefits:\n- Single source of truth for config.yaml structure\n- Proper YAML parsing everywhere\n- Easier to add new config fields\n\nTrade-off: May add complexity for simple one-off reads.","status":"open","priority":4,"issue_type":"task","created_at":"2025-12-07T02:03:26.067311-08:00","updated_at":"2025-12-07T02:03:26.067311-08:00"} +{"id":"bd-kwro.1","title":"Schema: Add message type and new fields","description":"Add to internal/storage/sqlite/schema.go and models:\n\nNew issue_type value:\n- message\n\nNew optional fields on Issue struct:\n- Sender string (who sent this)\n- Ephemeral bool (can be bulk-deleted)\n- RepliesTo string (issue ID for threading)\n- RelatesTo []string (issue IDs for knowledge graph)\n- Duplicates string (canonical issue ID)\n- SupersededBy string (replacement issue ID)\n\nUpdate:\n- internal/storage/sqlite/schema.go - add columns\n- internal/models/issue.go - add fields to struct\n- internal/storage/sqlite/sqlite.go - CRUD operations\n- Create migration from v0.30.1\n\nEnsure backward compatibility - all new fields optional.","status":"tombstone","issue_type":"task","created_at":"2025-12-16T03:01:19.777604-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pbh.12","title":"Push commit and tag to origin","description":"```bash\ngit push origin main\ngit push origin v0.30.4\n```\n\nThis triggers GitHub Actions:\n- GoReleaser build\n- PyPI publish\n- npm publish\n\n\n```verify\ngit ls-remote origin refs/tags/v0.30.4 | grep -q 'v0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.066074-08:00","updated_at":"2025-12-17T21:46:46.301948-08:00","closed_at":"2025-12-17T21:46:46.301948-08:00","dependencies":[{"issue_id":"bd-pbh.12","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.066442-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.12","depends_on_id":"bd-pbh.11","type":"blocks","created_at":"2025-12-17T21:19:11.265986-08:00","created_by":"daemon"}]} +{"id":"bd-aec5439f","title":"Update LINTING.md with current baseline","description":"After cleanup, document the remaining acceptable baseline in LINTING.md so we can track regression.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-27T18:53:10.38679-07:00","updated_at":"2025-12-17T22:58:34.564854-08:00","closed_at":"2025-12-17T22:58:34.564854-08:00"} +{"id":"bd-077e","title":"Add close_reason field to CLI schema and documentation","description":"PR #551 persists close_reason, but the CLI documentation may not mention this field as part of the issue schema.\n\n## Current State\n- close_reason is now persisted in database\n- `bd show --json` will return close_reason in JSON output\n- Documentation may not reflect this new field\n\n## What's Missing\n- CLI reference documentation for close_reason field\n- Schema documentation showing close_reason is a top-level issue field\n- Example output showing close_reason in bd show --json\n- bd close command documentation should mention close_reason parameter is optional\n\n## Suggested Action\n1. Update README.md or CLI reference docs to list close_reason as an issue field\n2. Add example to bd close documentation\n3. Update any type definitions or schema specs\n4. Consider adding close_reason to verbose list output (bd list --verbose)","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-14T14:25:28.448654-08:00","updated_at":"2025-12-14T14:25:28.448654-08:00","dependencies":[{"issue_id":"bd-077e","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:28.449968-08:00","created_by":"stevey"}]} +{"id":"bd-6pc","title":"Implement bd pin/unpin commands","description":"Add 'bd pin \u003cid\u003e' and 'bd unpin \u003cid\u003e' commands to toggle the pinned status of issues. Should support multiple IDs like other bd commands.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:28.292937-08:00","updated_at":"2025-12-19T17:43:35.713398-08:00","closed_at":"2025-12-19T00:35:31.612589-08:00","dependencies":[{"issue_id":"bd-6pc","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.119852-08:00","created_by":"daemon"},{"issue_id":"bd-6pc","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.352848-08:00","created_by":"daemon"}]} +{"id":"bd-5b6e","title":"Add tests for helper functions (GetDirtyIssueHash, GetAllDependencyRecords, export hashes)","description":"Several utility functions have 0% coverage:\n- GetDirtyIssueHash (dirty.go)\n- GetAllDependencyRecords (dependencies.go)\n- GetExportHash, SetExportHash, ClearAllExportHashes (hash.go)\n\nThese are lower priority but should have basic coverage.","status":"open","priority":4,"issue_type":"task","created_at":"2025-11-01T22:40:58.989976-07:00","updated_at":"2025-11-01T22:40:58.989976-07:00"} +{"id":"bd-3ggb","title":"Rebuild local binary","description":"Build and verify: go build -o bd ./cmd/bd \u0026\u0026 ./bd version","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:03.101428-08:00","updated_at":"2025-12-18T22:46:40.955673-08:00","closed_at":"2025-12-18T22:46:40.955673-08:00","dependencies":[{"issue_id":"bd-3ggb","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.748289-08:00","created_by":"daemon"},{"issue_id":"bd-3ggb","depends_on_id":"bd-4y4g","type":"blocks","created_at":"2025-12-18T22:43:20.950376-08:00","created_by":"daemon"}]} +{"id":"bd-c3u","title":"Review PR #512: clarify bd ready docs","description":"Review and merge PR #512 from aspiers. This PR clarifies what bd ready does after git pull in README.md. Simple 1-line change. URL: https://github.com/anthropics/beads/pull/512","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:15:13.405161+11:00","updated_at":"2025-12-13T07:07:29.641265-08:00","closed_at":"2025-12-13T07:07:29.641265-08:00"} +{"id":"bd-aydr.4","title":"Implement CLI command (cmd/bd/reset.go)","description":"Wire up the reset command with Cobra CLI.\n\n## Responsibilities\n- Define command and all flags\n- User confirmation prompt (unless --force)\n- Display impact summary before confirmation\n- Colored output and progress indicators\n- Call core reset package\n- Handle errors with user-friendly messages\n- Register command with rootCmd in init()\n\n## Flags\n```go\n--hard bool \"Also remove from git and commit\"\n--force bool \"Skip confirmation prompt\"\n--backup bool \"Create backup before reset\"\n--dry-run bool \"Preview what would happen\"\n--skip-init bool \"Do not re-initialize after reset\"\n--verbose bool \"Show detailed progress output\"\n```\n\n## Output Format\n```\nāš ļø This will reset beads to a clean state.\n\nWill be deleted:\n ā€¢ 47 issues (23 open, 24 closed)\n ā€¢ 12 tombstones\n\nContinue? [y/N] y\n\nā†’ Stopping daemons... āœ“\nā†’ Removing .beads/... āœ“\nā†’ Initializing fresh... āœ“\n\nāœ“ Reset complete. Run 'bd onboard' to set up hooks.\n```\n\n## Implementation Notes\n- Confirmation logic lives HERE, not in core package\n- Use color package (github.com/fatih/color) for output\n- Follow patterns from other commands (init.go, doctor.go)\n- Add to rootCmd in init() function\n\n## File Location\n`cmd/bd/reset.go`","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:54.318854+11:00","updated_at":"2025-12-13T10:13:32.611434+11:00","closed_at":"2025-12-13T09:59:41.72638+11:00","dependencies":[{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr.2","type":"blocks","created_at":"2025-12-13T08:45:09.817854+11:00","created_by":"daemon"},{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr.3","type":"blocks","created_at":"2025-12-13T08:45:09.883658+11:00","created_by":"daemon"},{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:54.319237+11:00","created_by":"daemon"},{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr.1","type":"blocks","created_at":"2025-12-13T08:45:09.762138+11:00","created_by":"daemon"}]} +{"id":"bd-pbh.10","title":"Run check-versions.sh - all must pass","description":"Run the version consistency check:\n```bash\n./scripts/check-versions.sh\n```\n\nAll versions must match 0.30.4.\n\n\n```verify\n./scripts/check-versions.sh\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.047311-08:00","updated_at":"2025-12-17T21:46:46.28316-08:00","closed_at":"2025-12-17T21:46:46.28316-08:00","dependencies":[{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.047888-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.1","type":"blocks","created_at":"2025-12-17T21:19:11.159084-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.4","type":"blocks","created_at":"2025-12-17T21:19:11.168248-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.5","type":"blocks","created_at":"2025-12-17T21:19:11.177869-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.6","type":"blocks","created_at":"2025-12-17T21:19:11.187629-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.7","type":"blocks","created_at":"2025-12-17T21:19:11.199955-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.8","type":"blocks","created_at":"2025-12-17T21:19:11.211479-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.9","type":"blocks","created_at":"2025-12-17T21:19:11.224059-08:00","created_by":"daemon"}]} +{"id":"bd-pbh.18","title":"Restart beads daemon","description":"Kill any running daemons so they pick up the new version:\n```bash\nbd daemons killall\n```\n\nStart fresh daemon:\n```bash\nbd list # triggers daemon start\n```\n\nVerify daemon version:\n```bash\nbd version --daemon\n```\n\n\n```verify\nbd version --daemon 2\u003e\u00261 | grep -q '0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.11636-08:00","updated_at":"2025-12-17T21:46:46.364842-08:00","closed_at":"2025-12-17T21:46:46.364842-08:00","dependencies":[{"issue_id":"bd-pbh.18","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.116706-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.18","depends_on_id":"bd-pbh.17","type":"blocks","created_at":"2025-12-17T21:19:11.330411-08:00","created_by":"daemon"}]} +{"id":"bd-cbed9619.2","title":"Implement content-first idempotent import","description":"**Summary:** Refactored issue import to be content-first and idempotent, ensuring consistent data synchronization across multiple import rounds by prioritizing content hash matching over ID-based updates.\n\n**Key Decisions:** \n- Implement content hash as primary matching mechanism\n- Create global collision resolution algorithm\n- Ensure importing same data multiple times results in no-op\n\n**Resolution:** The new import strategy guarantees predictable convergence across distributed systems, solving rename detection and collision handling while maintaining data integrity during multi-stage imports.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:38:25.671302-07:00","updated_at":"2025-12-17T23:18:29.112032-08:00","dependencies":[{"issue_id":"bd-cbed9619.2","depends_on_id":"bd-cbed9619.5","type":"blocks","created_at":"2025-10-28T18:39:28.360026-07:00","created_by":"daemon"},{"issue_id":"bd-cbed9619.2","depends_on_id":"bd-cbed9619.4","type":"blocks","created_at":"2025-10-28T18:39:28.383624-07:00","created_by":"daemon"},{"issue_id":"bd-cbed9619.2","depends_on_id":"bd-cbed9619.3","type":"blocks","created_at":"2025-10-28T18:39:28.407157-07:00","created_by":"daemon"}],"deleted_at":"2025-12-17T23:18:29.112032-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-9usz","title":"Test suite hangs/never finishes","description":"Running 'go test ./... -count=1' hangs indefinitely. The full test suite never completes, making it difficult to verify changes. Need to investigate which tests are hanging and fix or add timeouts.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-16T21:56:27.80191-08:00","updated_at":"2025-12-16T21:56:27.80191-08:00"} +{"id":"bd-mql4","title":"getLocalSyncBranch silently ignores YAML parse errors","description":"In autoimport.go:170-172, YAML parsing errors are silently ignored. If a user has malformed YAML in config.yaml, sync-branch will just silently be empty with no feedback.\n\nRecommendation: Add debug logging since this function is only called during auto-import, and debugging silent failures is painful.\n\nAdd: debug.Logf(\"Warning: failed to parse config.yaml: %v\", err)","status":"open","priority":4,"issue_type":"task","created_at":"2025-12-07T02:03:44.217728-08:00","updated_at":"2025-12-07T02:03:44.217728-08:00"} +{"id":"bd-pbh.1","title":"Update cmd/bd/version.go to 0.30.4","description":"Update the Version constant in cmd/bd/version.go:\n```go\nVersion = \"0.30.4\"\n```\n\n\n```verify\ngrep -q 'Version = \"0.30.4\"' cmd/bd/version.go\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.9462-08:00","updated_at":"2025-12-17T21:46:46.20387-08:00","closed_at":"2025-12-17T21:46:46.20387-08:00","dependencies":[{"issue_id":"bd-pbh.1","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.946633-08:00","created_by":"daemon"}]} +{"id":"bd-aydr.5","title":"Enhance bd doctor to suggest reset for broken states","description":"Update bd doctor to detect severely broken states and suggest reset.\n\n## Detection Criteria\nSuggest reset when:\n- Multiple unfixable errors detected\n- Corrupted JSONL that can't be repaired\n- Schema version mismatch that can't be migrated\n- Daemon state inconsistent and unkillable\n\n## Implementation\nAdd to doctor's check/fix flow:\n```go\nif unfixableErrors \u003e threshold {\n suggest('State may be too broken to fix. Consider: bd reset')\n}\n```\n\n## Output Example\n```\nāœ— Found 5 unfixable errors\n \n Your beads state may be too corrupted to repair.\n Consider running 'bd reset' to start fresh.\n (Use 'bd reset --backup' to save current state first)\n```\n\n## Notes\n- Don't auto-run reset, just suggest\n- This is lower priority, can be done in parallel with main work","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-13T08:44:55.591986+11:00","updated_at":"2025-12-13T06:24:29.561624-08:00","closed_at":"2025-12-13T10:17:23.4522+11:00","dependencies":[{"issue_id":"bd-aydr.5","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:55.59239+11:00","created_by":"daemon"}]} +{"id":"bd-lsv4","title":"GH#444: Fix inconsistent status naming in_progress vs in-progress","description":"Documentation uses in-progress (hyphen) but code expects in_progress (underscore). Update all docs to use canonical in_progress. See GitHub issue #444.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:14.349425-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-r6a.5","title":"Update documentation for template system","description":"Update AGENTS.md and help text to document the new template system:\n\n- How to create a template (epic + template label + child issues)\n- How to define variables (just use {{name}} placeholders)\n- How to instantiate (bd template instantiate)\n- Migration from YAML workflows (if any users had custom ones)","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-17T22:43:55.461345-08:00","updated_at":"2025-12-18T17:42:26.001474-08:00","closed_at":"2025-12-18T13:46:53.446262-08:00","dependencies":[{"issue_id":"bd-r6a.5","depends_on_id":"bd-r6a.4","type":"blocks","created_at":"2025-12-17T22:44:03.788517-08:00","created_by":"daemon"},{"issue_id":"bd-r6a.5","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:55.461763-08:00","created_by":"daemon"},{"issue_id":"bd-r6a.5","depends_on_id":"bd-r6a.3","type":"blocks","created_at":"2025-12-17T22:44:03.632404-08:00","created_by":"daemon"}]} +{"id":"bd-lo4","title":"Test pinned issue","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-18T21:44:49.031385-08:00","updated_at":"2025-12-18T21:47:25.055109-08:00","deleted_at":"2025-12-18T21:47:25.055109-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-gxq","title":"Simplify bd onboard to minimal AGENTS.md snippet pointing to bd prime","description":"## Context\nGH#604 raised concerns about bd onboard bloating AGENTS.md with ~100+ lines of static instructions that:\n- Load every session whether beads is being used or not\n- Get stale when bd upgrades\n- Waste tokens\n\n## Solution\nSimplify `bd onboard` to output a minimal snippet (~2 lines) that points to `bd prime`:\n\n```markdown\n## Issue Tracking\nThis project uses beads (`bd`) for issue tracking.\nRun `bd prime` for workflow context, or hooks auto-inject it.\n```\n\n## Rationale\n- `bd prime` is dynamic, concise (~80 lines), and always matches installed bd version\n- Hooks already auto-inject `bd prime` at session start when .beads/ detected\n- AGENTS.md only needs to mention beads exists, not contain full instructions\n\n## Implementation\n1. Update `cmd/bd/onboard.go` to output minimal snippet\n2. Keep `--output` flag for BD_GUIDE.md generation (may still be useful)\n3. Update help text to explain the new approach","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T11:42:38.604891-08:00","updated_at":"2025-12-18T11:47:28.020419-08:00","closed_at":"2025-12-18T11:47:28.020419-08:00"} +{"id":"bd-6s61","title":"Version Bump: {{version}}","description":"Release checklist for version {{version}}. This molecule ensures all release steps are completed properly.","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-19T22:55:42.487701-08:00","updated_at":"2025-12-20T17:59:26.261233-08:00","closed_at":"2025-12-20T01:18:47.905306-08:00"} +{"id":"bd-lfak","title":"bd preflight: PR readiness checks for contributors","description":"## Vision\n\nEncode project-specific institutional knowledge into executable checks. CONTRIBUTING.md is documentation that's read once and forgotten; `bd preflight` is documentation that runs at exactly the right moment.\n\n## Problem Statement\n\nContributors face a \"last mile\" problem - they do the work but stumble on project-specific gotchas at PR time:\n- Nix vendorHash gets stale when go.sum changes\n- Beads artifacts leak into PRs (see bd-umbf for namespace solution)\n- Version mismatches between version.go and default.nix\n- Tests/lint not run locally before pushing\n- Other project-specific checks that only surface when CI fails\n\nThese are too obscure to remember, exist in docs nobody reads end-to-end, and waste CI round-trips.\n\n## Why beads?\n\nBeads already has a foothold in the contributor workflow. It knows:\n- Git state (staged files, branch, dirty status)\n- Project structure\n- The specific issue being worked on\n- Project-specific configuration\n\n## Proposed Interface\n\n### Tier 1: Checklist Mode (v1)\n\n $ bd preflight\n PR Readiness Checklist:\n\n [ ] Tests pass: go test -short ./...\n [ ] Lint passes: golangci-lint run ./...\n [ ] No beads pollution: check .beads/issues.jsonl diff\n [ ] Nix hash current: go.sum unchanged or vendorHash updated\n [ ] Version sync: version.go matches default.nix\n\n Run 'bd preflight --check' to validate automatically.\n\n### Tier 2: Check Mode (v2)\n\n $ bd preflight --check\n āœ“ Tests pass\n āœ“ Lint passes\n āš  Beads pollution: 3 issues in diff - are these project issues or personal?\n āœ— Nix hash stale: go.sum changed, vendorHash needs update\n Fix: sha256-KRR6dXzsSw8OmEHGBEVDBOoIgfoZ2p0541T9ayjGHlI=\n āœ“ Version sync\n\n 1 error, 1 warning. Run 'bd preflight --fix' to auto-fix where possible.\n\n### Tier 3: Fix Mode (v3)\n\n $ bd preflight --fix\n āœ“ Updated vendorHash in default.nix\n āš  Cannot auto-fix beads pollution - manual review needed\n\n## Checks to Implement\n\n| Check | Description | Auto-fixable |\n|-------|-------------|--------------|\n| tests | Run go test -short ./... | No |\n| lint | Run golangci-lint | Partial (gofmt) |\n| beads-pollution | Detect personal issues in diff | No (see bd-umbf) |\n| nix-hash | Detect stale vendorHash | Yes (if nix available) |\n| version-sync | version.go matches default.nix | Yes |\n| no-debug | No TODO/FIXME/console.log | Warn only |\n| clean-stage | No unintended files staged | Warn only |\n\n## Future: Configuration\n\nMake checks configurable per-project via .beads/preflight.yaml:\n\n preflight:\n checks:\n - name: tests\n run: go test -short ./...\n required: true\n - name: no-secrets\n pattern: \"**/*.env\"\n staged: deny\n - name: custom-check\n run: ./scripts/validate.sh\n\nThis lets any project using beads define their own preflight checks.\n\n## Implementation Phases\n\n### Phase 1: Static Checklist\n- Implement bd preflight with hardcoded checklist for beads\n- No execution, just prints what to check\n- Update CONTRIBUTING.md to reference it\n\n### Phase 2: Automated Checks\n- Implement bd preflight --check\n- Run tests, lint, detect stale hashes\n- Clear pass/fail/warn output\n\n### Phase 3: Auto-fix\n- Implement bd preflight --fix\n- Fix vendorHash, version sync\n- Integrate with bd-umbf solution for pollution\n\n### Phase 4: Configuration\n- .beads/preflight.yaml support\n- Make it useful for other projects using beads\n- Plugin/hook system for custom checks\n\n## Dependencies\n\n- bd-umbf: Namespace isolation for beads pollution (blocking for full solution)\n\n## Success Metrics\n\n- Fewer CI failures on first PR push\n- Reduced \"fix nix hash\" commits\n- Contributors report preflight caught issues before CI","status":"open","priority":2,"issue_type":"epic","created_at":"2025-12-13T18:01:39.587078-08:00","updated_at":"2025-12-13T18:01:39.587078-08:00","dependencies":[{"issue_id":"bd-lfak","depends_on_id":"bd-umbf","type":"blocks","created_at":"2025-12-13T18:01:46.059901-08:00","created_by":"daemon"}]} +{"id":"bd-cils","title":"Work on beads-2nh: Fix gt spawn --issue to find issues in...","description":"Work on beads-2nh: Fix gt spawn --issue to find issues in rig's beads database. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:47.573854-08:00","updated_at":"2025-12-20T00:49:51.927884-08:00","closed_at":"2025-12-19T23:28:28.605343-08:00"} +{"id":"bd-aydr.9","title":"Add .beads-backup-* pattern to gitignore template","description":"Update the gitignore template in doctor package to include backup directories.\n\n## Change\nAdd `.beads-backup-*/` to the GitignoreTemplate in `cmd/bd/doctor/gitignore.go`\n\n## Why\nBackup directories created by `bd reset --backup` should not be committed to git.\nThey are local-only recovery tools.\n\n## File\n`cmd/bd/doctor/gitignore.go` - look for GitignoreTemplate constant","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-13T08:49:42.453483+11:00","updated_at":"2025-12-13T09:16:44.201889+11:00","closed_at":"2025-12-13T09:16:44.201889+11:00","dependencies":[{"issue_id":"bd-aydr.9","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:49:42.453886+11:00","created_by":"daemon"}]} +{"id":"bd-uqfn","title":"Work on beads-wkt: Output control parameters for MCP tool...","description":"Work on beads-wkt: Output control parameters for MCP tools (GH#622). Add brief, fields, max_description_length params to ready/list/show. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:57:10.675535-08:00","updated_at":"2025-12-20T00:49:51.929271-08:00","closed_at":"2025-12-19T23:28:25.362931-08:00"} +{"id":"bd-9g1z","title":"Fix or remove TestFindJSONLPathDefault (issue #356)","description":"Code health review found .test-skip permanently skips TestFindJSONLPathDefault.\n\nThe test references issue #356 about wrong JSONL filename expectations (issues.jsonl vs beads.jsonl).\n\nTest file: internal/beads/beads_test.go\n\nThe underlying migration from beads.jsonl to issues.jsonl may be complete, so either:\n1. Fix the test expectations\n2. Remove the test if no longer needed\n3. Document why it remains skipped","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-16T18:17:31.33975-08:00","updated_at":"2025-12-16T18:17:31.33975-08:00","dependencies":[{"issue_id":"bd-9g1z","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.169617-08:00","created_by":"daemon"}]} +{"id":"bd-rgyd","title":"Split internal/storage/sqlite/queries.go (1586 lines)","description":"Code health review found queries.go is too large at 1586 lines with:\n\n- Issue scanning logic duplicated between transaction.go and queries.go\n- Timestamp defensive fixes duplicated in CreateIssue, CreateIssues, batch_ops.go\n- Multiple similar patterns that should be consolidated\n\nAlso: transaction.go at 1284 lines, dependencies.go at 893 lines\n\nRecommendation:\n1. Extract common scanning into shared function\n2. Consolidate timestamp defensive fixes\n3. Split queries.go by domain (CRUD, search, batch, events)","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-16T18:17:23.85869-08:00","updated_at":"2025-12-16T18:17:23.85869-08:00","dependencies":[{"issue_id":"bd-rgyd","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.062038-08:00","created_by":"daemon"}]} +{"id":"bd-au0.6","title":"Add comprehensive filters to bd export","description":"Enhance bd export with filtering options for selective exports.\n\n**Currently only has:**\n- --status\n\n**Add filters:**\n- --label, --label-any\n- --assignee\n- --type\n- --priority, --priority-min, --priority-max\n- --created-after, --created-before\n- --updated-after, --updated-before\n\n**Use case:**\n- Export only open issues: bd export --status open\n- Export high-priority bugs: bd export --type bug --priority-max 1\n- Export recent issues: bd export --created-after 2025-01-01\n\n**Files to modify:**\n- cmd/bd/export.go\n- Reuse filter logic from list.go","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-21T21:07:19.431307-05:00","updated_at":"2025-11-21T21:07:19.431307-05:00","dependencies":[{"issue_id":"bd-au0.6","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:19.432983-05:00","created_by":"daemon"}]} +{"id":"bd-pbh.3","title":"Add 0.30.4 to info.go release notes","description":"Update cmd/bd/info.go versionChanges map with release notes for 0.30.4.\nInclude any workflow-impacting changes for --whats-new output.\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.966781-08:00","updated_at":"2025-12-17T21:46:46.222445-08:00","closed_at":"2025-12-17T21:46:46.222445-08:00","dependencies":[{"issue_id":"bd-pbh.3","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.967287-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.3","depends_on_id":"bd-pbh.2","type":"blocks","created_at":"2025-12-17T21:19:11.149584-08:00","created_by":"daemon"}]} +{"id":"bd-y8bj","title":"Auto-detect identity from directory context for bd mail","description":"Currently bd mail inbox defaults to git user name, requiring --identity flag with exact format.\n\n## Problem\n- Mail sent to `gastown/crew/max`\n- Max runs `bd mail inbox` ā†’ defaults to 'Steve Yegge' (git user)\n- Max must know to use `--identity 'gastown/crew/max'` with exact slashes\n\n## Proposed Fix\nAuto-detect identity from directory context when in a Gas Town workspace:\n- In `/Users/stevey/gt/gastown/crew/max`, infer identity = `gastown/crew/max`\n- Pattern: `\u003ctown\u003e/\u003crig\u003e/\u003crole\u003e/\u003cname\u003e` ā†’ `\u003crig\u003e/\u003crole\u003e/\u003cname\u003e`\n\n## Additional Improvements\n1. Support GT_IDENTITY env var (set by gt crew at / session spawning)\n2. Support identity in .beads/config.yaml\n3. Normalize format: accept both slashes and dashes as equivalent\n\n## Context\nDiscovered during crew-to-crew work assignment. Max couldn't see mail despite correct nudge because identity defaulted wrong.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-20T17:22:53.938586-08:00","updated_at":"2025-12-20T18:12:58.472262-08:00","closed_at":"2025-12-20T17:58:51.034201-08:00"} +{"id":"bd-nuh1","title":"GH#403: bd doctor --fix circular error message","description":"bd doctor --fix suggests running bd doctor --fix for deletions manifest issue. Fix to provide actual resolution. See GitHub issue #403.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:16.290018-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-u0g9","title":"GH#405: Prefix parsing with hyphens treats first segment as prefix","description":"Prefix me-py-toolkit gets parsed as just me- when detecting mismatches. Fix prefix parsing to handle multi-hyphen prefixes. See GitHub issue #405.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:18.354066-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-0fvq","title":"bd doctor should recommend bd prime migration for existing repos","description":"bd doctor should detect old beads integration patterns and recommend migrating to bd prime approach.\n\n## Current behavior\n- bd doctor checks if Claude hooks are installed globally\n- Doesn't check project-level integration (AGENTS.md, CLAUDE.md)\n- Doesn't recommend migration for repos using old patterns\n\n## Desired behavior\nbd doctor should detect and suggest:\n\n1. **Old slash command pattern detected**\n - Check for /beads:* references in AGENTS.md, CLAUDE.md\n - Suggest: These slash commands are deprecated, use bd prime hooks instead\n \n2. **No agent documentation**\n - Check if AGENTS.md or CLAUDE.md exists\n - Suggest: Run 'bd onboard' or 'bd setup claude' to document workflow\n \n3. **Old MCP-only pattern**\n - Check for instructions to use MCP tools but no bd prime hooks\n - Suggest: Add bd prime hooks for better token efficiency\n\n4. **Migration path**\n - Show: 'Run bd setup claude to add SessionStart/PreCompact hooks'\n - Show: 'Update AGENTS.md to reference bd prime instead of slash commands'\n\n## Example output\n\nāš  Warning: Old beads integration detected in CLAUDE.md\n Found: /beads:* slash command references (deprecated)\n Recommend: Migrate to bd prime hooks for better token efficiency\n Fix: Run 'bd setup claude' and update CLAUDE.md\n\nšŸ’” Tip: bd prime + hooks reduces token usage by 80-99% vs slash commands\n MCP mode: ~50 tokens vs ~10.5k for full MCP scan\n CLI mode: ~1-2k tokens with automatic context recovery\n\n## Benefits\n- Helps existing repos adopt new best practices\n- Clear migration path for users\n- Better token efficiency messaging","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-12T03:20:25.567748-08:00","updated_at":"2025-11-12T03:20:25.567748-08:00"} +{"id":"bd-si4g","title":"Verify release artifacts","description":"Check GitHub releases page - binaries for darwin/linux/windows should be available","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:04.183029-08:00","updated_at":"2025-12-20T00:49:51.92894-08:00","closed_at":"2025-12-20T00:25:52.720816-08:00","dependencies":[{"issue_id":"bd-si4g","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.173619-08:00","created_by":"daemon"},{"issue_id":"bd-si4g","depends_on_id":"bd-otli","type":"blocks","created_at":"2025-12-19T22:56:23.428507-08:00","created_by":"daemon"}]} +{"id":"bd-qqc.11","title":"Update go install bd to {{version}}","description":"Rebuild and install bd to ~/go/bin:\n\n```bash\ngo install ./cmd/bd\n~/go/bin/bd version # Verify shows {{version}}\n```\n\nNote: If ~/go/bin is in PATH before /opt/homebrew/bin, this is the version that runs by default.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:07:55.838013-08:00","updated_at":"2025-12-18T23:09:05.775582-08:00","closed_at":"2025-12-18T23:09:05.775582-08:00","dependencies":[{"issue_id":"bd-qqc.11","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T23:07:55.838432-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.11","depends_on_id":"bd-qqc.10","type":"blocks","created_at":"2025-12-18T23:08:19.629947-08:00","created_by":"daemon"}]} +{"id":"bd-jvu","title":"Add bd update --parent flag to change issue parent","description":"Allow changing an issue's parent with bd update --parent \u003cnew-parent-id\u003e. Useful for reorganizing tasks under different epics or moving issues between hierarchies. Should update the parent-child dependency relationship.","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-17T22:24:07.274485-08:00","updated_at":"2025-12-17T22:34:07.318938-08:00","closed_at":"2025-12-17T22:34:07.318938-08:00"} +{"id":"bd-fx7v","title":"Improve test coverage for cmd/bd/doctor/fix (23.9% ā†’ 50%)","description":"The doctor/fix package has only 23.9% test coverage. The doctor fix functionality is important for troubleshooting.\n\nCurrent coverage: 23.9%\nTarget coverage: 50%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:05.67127-08:00","updated_at":"2025-12-13T21:01:20.839298-08:00"} +{"id":"bd-411u","title":"Document BEADS_DIR pattern for multi-agent workspaces (Gas Town)","description":"Gas Town and similar multi-agent systems need to configure separate beads databases per workspace/rig, distinct from any project-level beads.\n\n## Use Case\n\nIn Gas Town:\n- Each 'rig' (managed project) has multiple agents (polecats, refinery, witness)\n- All agents in a rig should share a single beads database at the rig level\n- This should be separate from any .beads/ the project itself uses\n- The BEADS_DIR env var enables this\n\n## Documentation Needed\n\n1. Add a section to docs explaining BEADS_DIR for multi-agent setups\n2. Example: setting BEADS_DIR in agent startup scripts/hooks\n3. Clarify interaction with project-level .beads/ (BEADS_DIR takes precedence)\n\n## Current Support\n\nAlready implemented in internal/beads/beads.go:FindDatabasePath():\n- BEADS_DIR env var is checked first (preferred)\n- BEADS_DB env var still supported (deprecated)\n- Falls back to .beads/ search in tree\n\nJust needs documentation for the multi-agent workspace pattern.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-15T22:08:22.158027-08:00","updated_at":"2025-12-15T22:08:22.158027-08:00"} +{"id":"bd-dqu8","title":"Restart running daemons","description":"Kill and restart any running bd daemons to pick up new version: pkill -f 'bd daemon' \u0026\u0026 bd daemon --start","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T00:32:26.559311-08:00","updated_at":"2025-12-20T00:32:59.123766-08:00","closed_at":"2025-12-20T00:32:59.123766-08:00","dependencies":[{"issue_id":"bd-dqu8","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-20T00:32:39.36213-08:00","created_by":"daemon"},{"issue_id":"bd-dqu8","depends_on_id":"bd-fgw3","type":"blocks","created_at":"2025-12-20T00:32:39.427846-08:00","created_by":"daemon"}]} +{"id":"bd-siz1","title":"GH#532: bd sync circular error (suggests running bd sync)","description":"bd sync error message recommends running bd sync to fix the bd sync error. Fix error handling to provide useful guidance. See GitHub issue #532.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:04:00.543573-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-g9eu","title":"Investigate TestRoutingIntegration failure","description":"TestRoutingIntegration/maintainer_with_SSH_remote failed during pre-commit check with \"expected role maintainer, got contributor\".\nThis occurred while running `go test -short ./...` on darwin/arm64.\nThe failure appears unrelated to storage/sqlite changes.\nNeed to investigate if this is a flaky test or environmental issue.","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-20T15:55:19.337094-08:00","updated_at":"2025-11-20T15:55:19.337094-08:00"} +{"id":"bd-pbh.6","title":"Update integrations/beads-mcp/pyproject.toml to 0.30.4","description":"Update version in pyproject.toml:\n```toml\nversion = \"0.30.4\"\n```\n\n\n```verify\ngrep -q 'version = \"0.30.4\"' integrations/beads-mcp/pyproject.toml\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.994004-08:00","updated_at":"2025-12-17T21:46:46.246574-08:00","closed_at":"2025-12-17T21:46:46.246574-08:00","dependencies":[{"issue_id":"bd-pbh.6","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.994376-08:00","created_by":"daemon"}]} +{"id":"bd-qqc.3","title":"Update CHANGELOG.md for {{version}}","description":"In CHANGELOG.md:\n\n1. Change `## [Unreleased]` section header to `## [{{version}}] - {{date}}`\n2. Add new empty `## [Unreleased]` section above it\n3. Review and clean up the changes list\n\nFormat:\n```markdown\n## [Unreleased]\n\n## [{{version}}] - {{date}}\n\n### Added\n- ...\n\n### Changed\n- ...\n\n### Fixed\n- ...\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:39.738561-08:00","updated_at":"2025-12-18T23:34:18.629213-08:00","closed_at":"2025-12-18T22:41:41.846609-08:00","dependencies":[{"issue_id":"bd-qqc.3","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:39.739138-08:00","created_by":"stevey"}]} {"id":"bd-usro","title":"Rename 'template instantiate' to 'mol bond'","description":"Rename the template instantiation command to match molecule metaphor.\n\nCurrent: bd template instantiate \u003cid\u003e --var key=value\nTarget: bd mol bond \u003cid\u003e --var key=value\n\nChanges needed:\n- Add 'mol' command group (or extend existing)\n- Add 'bond' subcommand that wraps template instantiate logic\n- Keep 'template instantiate' as deprecated alias for backward compat\n- Update help text and docs to use molecule terminology\n\nThe 'bond' verb captures:\n1. Chemistry metaphor (molecules bond to form structures)\n2. Dependency linking (child issues bonded in a DAG)\n3. Short and active\n\nSee also: molecule execution model in Gas Town","status":"open","priority":1,"issue_type":"feature","created_at":"2025-12-20T16:56:37.582795-08:00","updated_at":"2025-12-20T16:56:37.582795-08:00"} -{"id":"bd-uutv","title":"Work on beads-rs0: Namepool configuration for themed pole...","description":"Work on beads-rs0: Namepool configuration for themed polecat names. See bd show beads-rs0 for full details.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T21:49:48.129778-08:00","updated_at":"2025-12-19T21:59:25.565894-08:00","closed_at":"2025-12-19T21:59:25.565894-08:00"} -{"id":"bd-vgi5","title":"Push version bump to GitHub","description":"git push origin main - triggers CI but no release yet.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:05.363604-08:00","updated_at":"2025-12-18T22:46:57.50777-08:00","closed_at":"2025-12-18T22:46:57.50777-08:00","dependencies":[{"issue_id":"bd-vgi5","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.87736-08:00","created_by":"daemon"},{"issue_id":"bd-vgi5","depends_on_id":"bd-3ggb","type":"blocks","created_at":"2025-12-18T22:43:21.078208-08:00","created_by":"daemon"}]} -{"id":"bd-vpan","title":"Re: Thread Test 2","description":"Got your message. Testing reply feature.","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:29.144352-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-vpan","depends_on_id":"bd-x36g","type":"replies-to","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} +{"id":"bd-0a43","title":"Split monolithic sqlite.go into focused files","description":"internal/storage/sqlite/sqlite.go is 1050 lines containing initialization, 20+ CRUD methods, query building, and schema management.\n\nSplit into:\n- store.go: Store struct \u0026 initialization (150 lines)\n- bead_queries.go: Bead CRUD (300 lines)\n- work_queries.go: Work queries (200 lines) \n- stats_queries.go: Statistics (150 lines)\n- schema.go: Schema \u0026 migrations (150 lines)\n- helpers.go: Common utilities (100 lines)\n\nImpact: Impossible to understand at a glance; hard to find specific functionality; high cognitive load\n\nEffort: 6-8 hours","status":"closed","issue_type":"task","created_at":"2025-11-16T14:51:16.520465-08:00","updated_at":"2025-12-17T23:13:40.533947-08:00","closed_at":"2025-12-17T16:51:30.236012-08:00"} {"id":"bd-vs9","title":"Fix unparam unused parameter in cmd/bd/doctor.go:541","description":"Linting issue: checkHooksQuick - path is unused (unparam) at cmd/bd/doctor.go:541:22. Error: func checkHooksQuick(path string) string {","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:17.02177046-07:00","updated_at":"2025-12-17T23:13:40.535743-08:00","closed_at":"2025-12-17T16:46:11.028332-08:00"} -{"id":"bd-w193","title":"Work on beads-399: Add omitempty to JSONL fields for smal...","description":"Work on beads-399: Add omitempty to JSONL fields for smaller notifications. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:37.440894-08:00","updated_at":"2025-12-20T00:26:12.607705-08:00","closed_at":"2025-12-19T23:23:09.542288-08:00"} -{"id":"bd-wc2","title":"Test body-file","description":"This is a test description from a file.\n\nIt has multiple lines.\n","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T17:27:20.508724-08:00","updated_at":"2025-12-17T17:28:33.83142-08:00","closed_at":"2025-12-17T17:28:33.83142-08:00"} -{"id":"bd-whgv","title":"Merge: bd-401h","description":"branch: polecat/rictus\ntarget: main\nsource_issue: bd-401h\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:20:37.854953-08:00","updated_at":"2025-12-19T23:20:37.854953-08:00"} -{"id":"bd-x1xs","title":"Work on beads-1ra: Add molecules.jsonl as separate catalo...","description":"Work on beads-1ra: Add molecules.jsonl as separate catalog file for template molecules","status":"in_progress","priority":2,"issue_type":"task","created_at":"2025-12-19T20:17:44.840032-08:00","updated_at":"2025-12-19T20:17:44.905944-08:00"} -{"id":"bd-x36g","title":"Thread Test 2","description":"Testing direct mode","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:16.470631-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} -{"id":"bd-xctp","title":"GH#519: bd sync fails when sync.branch is currently checked-out branch","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:06:05.319281-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-xj2e","title":"GH#522: Add --type flag to bd update command","description":"Add --type flag to bd update for changing issue type (task/epic/bug/feature). Storage layer already supports it. See GitHub issue #522.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:12.506583-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-y2v","title":"Refactor duplicate JSONL-from-git parsing code","description":"Both readFirstIssueFromGit() in init.go and importFromGit() in autoimport.go have similar code patterns for:\n1. Running git show \u003cref\u003e:\u003cpath\u003e\n2. Scanning the output with bufio.Scanner\n3. Parsing JSON lines\n\nCould be refactored to share a helper like:\n- readJSONLFromGit(gitRef, path string) ([]byte, error)\n- Or a streaming version: streamJSONLFromGit(gitRef, path string) (io.Reader, error)\n\nFiles:\n- cmd/bd/autoimport.go:225-256 (importFromGit)\n- cmd/bd/init.go:1212-1243 (readFirstIssueFromGit)\n\nPriority is low since code duplication is minimal and both functions work correctly.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-05T14:51:18.41124-08:00","updated_at":"2025-12-05T14:51:18.41124-08:00"} -{"id":"bd-y4vz","title":"Work on beads-eub: Consolidated context tool for MCP serv...","description":"Work on beads-eub: Consolidated context tool for MCP server (GH#636). Merge set_context, where_am_i, init into single 'context' tool. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:58.527144-08:00","updated_at":"2025-12-20T00:26:12.607357-08:00","closed_at":"2025-12-19T23:31:11.906952-08:00"} -{"id":"bd-y8bj","title":"Auto-detect identity from directory context for bd mail","description":"Currently bd mail inbox defaults to git user name, requiring --identity flag with exact format.\n\n## Problem\n- Mail sent to `gastown/crew/max`\n- Max runs `bd mail inbox` ā†’ defaults to 'Steve Yegge' (git user)\n- Max must know to use `--identity 'gastown/crew/max'` with exact slashes\n\n## Proposed Fix\nAuto-detect identity from directory context when in a Gas Town workspace:\n- In `/Users/stevey/gt/gastown/crew/max`, infer identity = `gastown/crew/max`\n- Pattern: `\u003ctown\u003e/\u003crig\u003e/\u003crole\u003e/\u003cname\u003e` ā†’ `\u003crig\u003e/\u003crole\u003e/\u003cname\u003e`\n\n## Additional Improvements\n1. Support GT_IDENTITY env var (set by gt crew at / session spawning)\n2. Support identity in .beads/config.yaml\n3. Normalize format: accept both slashes and dashes as equivalent\n\n## Context\nDiscovered during crew-to-crew work assignment. Max couldn't see mail despite correct nudge because identity defaulted wrong.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-20T17:22:53.938586-08:00","updated_at":"2025-12-20T17:58:51.034201-08:00","closed_at":"2025-12-20T17:58:51.034201-08:00","close_reason":"Obsolete - bd mail commands removed, mail now in Gas Town"} -{"id":"bd-y8tn","title":"Test Molecule","description":"A test molecule","status":"closed","priority":2,"issue_type":"molecule","created_at":"2025-12-19T18:30:24.491279-08:00","updated_at":"2025-12-19T18:31:12.49898-08:00","closed_at":"2025-12-19T18:31:12.49898-08:00","close_reason":"test molecule - deleting"} +{"id":"bd-4qfb","title":"Improve bd doctor output formatting for better readability","description":"The current bd doctor output is a wall of text that's hard to process. Consider improvements like:\n- Grouping related checks into collapsible sections\n- Using color/bold for section headers\n- Showing only failures/warnings by default with --verbose for full output\n- Better visual hierarchy between major sections\n- Summary line at top (e.g., '24 checks passed, 0 warnings, 0 errors')","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T09:29:27.557578+11:00","updated_at":"2025-12-13T09:29:27.557578+11:00"} +{"id":"bd-7bbc4e6a","title":"Add MCP server functions for repair commands","description":"**Summary:** Added MCP server repair functions for agent dependency management, system validation, and pollution detection. Implemented across BdClientBase, BdCliClient, and daemon clients to enhance system diagnostics and self-healing capabilities.\n\n**Key Decisions:** \n- Expose repair_deps(), detect_pollution(), validate() via MCP server\n- Create abstract method stubs with fallback to CLI execution\n- Use @mcp.tool decorators for function registration\n\n**Resolution:** Successfully implemented comprehensive repair command infrastructure, enabling more robust system health monitoring and automated remediation with full CLI and daemon support.","notes":"Implemented all three MCP server functions:\n\n1. **repair_deps(fix=False)** - Find/fix orphaned dependencies\n2. **detect_pollution(clean=False)** - Detect/clean test issues \n3. **validate(checks=None, fix_all=False)** - Run comprehensive health checks\n\nChanges:\n- Added abstract methods to BdClientBase\n- Implemented in BdCliClient (CLI execution)\n- Added NotImplementedError stubs in BdDaemonClient (falls back to CLI)\n- Created wrapper functions in tools.py\n- Registered @mcp.tool decorators in server.py\n\nAll commands tested and working with --no-daemon flag.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-28T19:37:55.72639-07:00","updated_at":"2025-12-16T01:08:11.983953-08:00","closed_at":"2025-11-07T19:38:12.152437-08:00"} +{"id":"bd-4ri","title":"Fix TestFallbackToDirectModeEnablesFlush deadlock causing 10min test timeout","description":"## Problem\n\nTestFallbackToDirectModeEnablesFlush in direct_mode_test.go deadlocks for 9m59s before timing out, causing the entire test suite to take 10+ minutes instead of \u003c10 seconds.\n\n## Root Cause\n\nDatabase lock contention between test cleanup and flushToJSONL():\n- Test cleanup (line 36) tries to close DB via defer\n- flushToJSONL() (line 132) is still accessing DB\n- Results in deadlock: database/sql.(*DB).Close() waits for mutex while GetJSONLFileHash() holds it\n\n## Stack Trace Evidence\n\n```\ngoroutine 512 [sync.Mutex.Lock, 9 minutes]:\ndatabase/sql.(*DB).Close(0x14000643790)\n .../database/sql/sql.go:927 +0x84\ngithub.com/steveyegge/beads/cmd/bd.TestFallbackToDirectModeEnablesFlush.func1()\n .../direct_mode_test.go:36 +0xf4\n\nWhile goroutine running flushToJSONL() holds DB connection via GetJSONLFileHash()\n```\n\n## Impact\n\n- Test suite: 10+ minutes ā†’ should be \u003c10 seconds\n- ALL other tests pass in ~4 seconds\n- This ONE test accounts for 99.9% of test runtime\n\n## Related\n\nThis is the EXACT same issue documented in MAIN_TEST_REFACTOR_NOTES.md for why main_test.go refactoring was deferred - global state manipulation + DB cleanup = deadlock.\n\n## Fix Approaches\n\n1. **Add proper cleanup sequencing** - stop flush goroutines BEFORE closing DB\n2. **Use test-specific DB lifecycle** - ensure flush completes before cleanup\n3. **Mock the flush mechanism** - avoid real DB for testing this code path \n4. **Add explicit timeout handling** - fail fast with clear error instead of hanging\n\n## Files\n\n- cmd/bd/direct_mode_test.go:36-132\n- cmd/bd/autoflush.go:353 (validateJSONLIntegrity)\n- cmd/bd/autoflush.go:508 (flushToJSONLWithState)\n\n## Acceptance\n\n- Test passes without timeout\n- Test suite completes in \u003c10 seconds\n- No deadlock between cleanup and flush operations","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-21T20:09:00.794372-05:00","updated_at":"2025-12-17T23:13:40.533279-08:00","closed_at":"2025-12-17T17:25:07.626617-08:00"} +{"id":"bd-401h","title":"Work on beads-7jl: Fix Windows installer file locking iss...","description":"Work on beads-7jl: Fix Windows installer file locking issue (GH#652). Close file handle before extraction in postinstall.js. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:57.873767-08:00","updated_at":"2025-12-19T23:20:05.747664-08:00","closed_at":"2025-12-19T23:20:05.747664-08:00"} +{"id":"bd-tj00","title":"Update local installation","description":"go build -o ~/.local/bin/bd ./cmd/bd \u0026\u0026 codesign -s - ~/.local/bin/bd","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:20.616907-08:00","updated_at":"2025-12-20T21:55:42.756171-08:00","closed_at":"2025-12-20T21:55:42.756171-08:00","dependencies":[{"issue_id":"bd-tj00","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:20.619834-08:00","created_by":"daemon"},{"issue_id":"bd-tj00","depends_on_id":"bd-9l0h","type":"blocks","created_at":"2025-12-20T21:53:29.817989-08:00","created_by":"daemon"}]} +{"id":"bd-aydr.2","title":"Implement backup functionality for reset","description":"Add backup capability that can be used by reset command.\n\n## Functionality\n- Copy .beads/ to .beads-backup-{timestamp}/\n- Timestamp format: YYYYMMDD-HHMMSS\n- Preserve file permissions\n- Return backup path for user feedback\n\n## Location\n`internal/reset/backup.go` - keep with reset package for now (YAGNI)\n\n## Interface\n```go\nfunc CreateBackup(beadsDir string) (backupPath string, err error)\n```\n\n## Notes\n- Simple recursive file copy, no compression needed\n- Error if backup dir already exists (unlikely with timestamp)\n- Backup directories SHOULD be gitignored\n- Add `.beads-backup-*/` pattern to .beads/.gitignore template in doctor package\n- Consider: ListBackups() for future `bd backup list` command (not for this PR)","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:51.306103+11:00","updated_at":"2025-12-13T10:13:32.610819+11:00","closed_at":"2025-12-13T09:20:20.590488+11:00","dependencies":[{"issue_id":"bd-aydr.2","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:51.306474+11:00","created_by":"daemon"}]} +{"id":"bd-6sm6","title":"Improve test coverage for internal/export (37.1% ā†’ 60%)","description":"The export package has only 37.1% test coverage. Export functionality needs good coverage to ensure data integrity.\n\nCurrent coverage: 37.1%\nTarget coverage: 60%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:06.802277-08:00","updated_at":"2025-12-13T21:01:19.08088-08:00"} +{"id":"bd-qqc.8","title":"Create and push git tag v{{version}}","description":"Create the release tag and push it:\n\n```bash\ngit tag v{{version}}\ngit push origin v{{version}}\n```\n\nThis triggers the GoReleaser GitHub Action to build release binaries.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:34.659927-08:00","updated_at":"2025-12-18T22:47:14.054232-08:00","closed_at":"2025-12-18T22:47:14.054232-08:00","dependencies":[{"issue_id":"bd-qqc.8","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:34.660248-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.8","depends_on_id":"bd-vgi5","type":"blocks","created_at":"2025-12-18T22:43:21.209529-08:00","created_by":"daemon"}]} +{"id":"bd-ork0","title":"Add comments to 30+ silently ignored errors or fix them","description":"Code health review found 30+ instances of error suppression using blank identifier without explanation:\n\nGood examples (with comments):\n- merge.go: _ = gitRmCmd.Run() // Ignore errors\n- daemon_watcher.go: _ = watcher.Add(...) // Ignore error\n\nBad examples (no context):\n- create.go:213: dbPrefix, _ = store.GetConfig(ctx, \"issue_prefix\")\n- daemon_sync_branch.go: _ = daemonClient.Close()\n- migrate_hash_ids.go, version_tracking.go: _ = store.Close()\n\nFix: Add comments explaining WHY errors are ignored, or handle them properly.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:25.899372-08:00","updated_at":"2025-12-16T18:17:25.899372-08:00","dependencies":[{"issue_id":"bd-ork0","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.275843-08:00","created_by":"daemon"}]} +{"id":"bd-pzw7","title":"gt handoff deadlock at handoff.go:125","notes":"When running 'gt handoff -m \"message\"' after successful MR submit, go panics with 'fatal error: all goroutines are asleep - deadlock\\!' at handoff.go:125. The shutdown request still appears to be sent successfully but the command crashes. Stack trace shows issue is in runHandoff select statement.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-19T23:22:12.46315-08:00","updated_at":"2025-12-19T23:22:18.613883-08:00"} +{"id":"bd-77gm","title":"Import reports misleading '0 created, 0 updated' when actually importing all issues","description":"When running 'bd import' on a fresh database (no existing issues), the command reports 'Import complete: 0 created, 0 updated' even though it successfully imported all issues from the JSONL file.\n\n**Steps to reproduce:**\n1. Delete .beads/beads.db\n2. Run: bd import .beads/issues.jsonl\n3. Observe output: 'Import complete: 0 created, 0 updated'\n4. Run: bd list\n5. Confirm: All issues are actually present in the database\n\n**Expected behavior:**\nReport the actual number of issues imported, e.g., 'Import complete: 523 created, 0 updated'\n\n**Actual behavior:**\n'Import complete: 0 created, 0 updated' (misleading - makes user think import failed)\n\n**Impact:**\n- Users think import failed when it succeeded\n- Confusing during database sync operations (e.g., after git pull)\n- Makes debugging harder (can't tell if import actually worked)\n\n**Context:**\nDiscovered during VC session when syncing database after git pull. The misleading message caused confusion about whether the database was properly synced with the canonical JSONL file.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-11-09T16:20:13.191156-08:00","updated_at":"2025-11-09T16:20:13.191156-08:00"} +{"id":"bd-6rl","title":"Merge3Way public API does not expose TTL parameter","description":"The public Merge3Way() function in merge.go does not allow callers to configure the tombstone TTL. It hard-codes the default via merge3WayWithTTL(). While merge3WayWithTTL() exists, it is unexported (lowercase). This means the CLI and tests cannot configure TTL at merge time. Use cases: testing with different TTL values, per-repository TTL configuration, debugging with short TTL, supporting --ttl flag in bd merge command (mentioned in design doc bd-zvg). Recommendation: Export Merge3WayWithTTL (rename to uppercase). Files: internal/merge/merge.go:77, 292-298","status":"open","priority":3,"issue_type":"feature","created_at":"2025-12-05T16:36:15.756814-08:00","updated_at":"2025-12-05T16:36:15.756814-08:00"} +{"id":"bd-qqc.4","title":"Run tests and verify build","description":"Run the test suite to verify nothing is broken:\n\n```bash\n./scripts/test.sh\n```\n\nOr manually:\n```bash\ngo build ./cmd/bd/...\ngo test ./...\n```\n\nFix any failures before proceeding.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:52.308314-08:00","updated_at":"2025-12-18T23:34:18.631671-08:00","closed_at":"2025-12-18T22:41:41.856318-08:00","dependencies":[{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc.1","type":"blocks","created_at":"2025-12-18T13:00:40.62142-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc.2","type":"blocks","created_at":"2025-12-18T13:00:45.820132-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc.3","type":"blocks","created_at":"2025-12-18T13:00:51.014568-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:52.308943-08:00","created_by":"stevey"}]} +{"id":"bd-o9o","title":"Exclude pinned issues from bd ready","description":"Update bd ready to exclude pinned issues. Pinned issues are context markers, not work items, and should never appear in the ready-to-work list.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:41.979073-08:00","updated_at":"2025-12-18T23:33:41.979073-08:00","dependencies":[{"issue_id":"bd-o9o","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.392931-08:00","created_by":"daemon"},{"issue_id":"bd-o9o","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.612655-08:00","created_by":"daemon"}]} +{"id":"bd-581b80b3","title":"bd find-duplicates - AI-powered duplicate detection","description":"Find semantically duplicate issues.\n\nApproaches:\n1. Mechanical: Exact title/description matching\n2. Embeddings: Cosine similarity (cheap, scalable)\n3. AI: LLM-based semantic comparison (expensive, accurate)\n\nUses embeddings by default for \u003e100 issues.\n\nFiles: cmd/bd/find_duplicates.go (new)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-10-29T20:49:49.126801-07:00","updated_at":"2025-12-17T22:58:34.563511-08:00","closed_at":"2025-12-17T22:58:34.563511-08:00"} +{"id":"bd-j3il","title":"Add bd reset command for clean slate restart","description":"Implement a command to reset beads to a clean starting state.\n\n**Context:** GitHub issue #479 - users sometimes get beads into an invalid state after updates, and there's no clean way to start fresh. The git backup/restore mechanism that protects against accidental deletion also makes it hard to intentionally reset.\n\n**Current workaround** (from maphew):\n```bash\nbd daemons killall\ngit rm .beads/*.jsonl\ngit commit -m 'remove old issues'\nrm .beads/*\nbd init\nbd onboard\n```\n\n**Desired:** A proper `bd reset` command that handles this cleanly and safely.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-13T08:41:34.956552+11:00","updated_at":"2025-12-13T08:43:49.970591+11:00","closed_at":"2025-12-13T08:43:49.970591+11:00"} +{"id":"bd-kwro.7","title":"Identity Configuration","description":"Implement identity system for sender field.\n\nConfiguration sources (in priority order):\n1. --identity flag on commands\n2. BEADS_IDENTITY environment variable\n3. .beads/config.json: {\"identity\": \"worker-name\"}\n4. Default: git user.name or hostname\n\nNew config file support:\n- .beads/config.json for per-repo settings\n- identity field for messaging\n\nHelper function:\n- GetIdentity() string - resolves identity from sources\n\nUpdate bd mail send to use GetIdentity() for sender field.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:02:17.603608-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-hnkg","title":"GH#540: Add silent quick-capture mode (bd q)","description":"Add bd q alias for quick capture that outputs only issue ID. Useful for piping/scripting. See GitHub issue #540.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:03:38.260135-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} +{"id":"bd-kwro.6","title":"Mail Commands: bd mail send/inbox/read/ack","description":"Implement core mail commands in cmd/bd/mail.go\n\nCommands:\n- bd mail send \u003crecipient\u003e -s 'Subject' -m 'Body' [--urgent]\n - Creates issue with type=message, sender=identity, assignee=recipient\n - --urgent sets priority=0\n \n- bd mail inbox [--from \u003csender\u003e] [--priority \u003cn\u003e]\n - Lists open messages where assignee=my identity\n - Sorted by priority, then date\n \n- bd mail read \u003cid\u003e\n - Shows full message content (subject, body, sender, timestamp)\n - Does NOT close (separate from ack)\n \n- bd mail ack \u003cid\u003e\n - Marks message as read by closing it\n - Can ack multiple: bd mail ack \u003cid1\u003e \u003cid2\u003e ...\n\nRequires: Identity configuration (bd-kwro.7)","status":"tombstone","issue_type":"task","created_at":"2025-12-16T03:02:12.103755-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-47tn","title":"Add bd daemon --stop-all command to kill all daemon processes","description":"Currently there's no easy way to stop all running bd daemon processes. Users must resort to pkill -f 'bd daemon' or similar shell commands.\n\nAdd a --stop-all flag to bd daemon that:\n1. Finds all running bd daemon processes (not just the current repo's daemon)\n2. Gracefully stops them all\n3. Reports how many were stopped\n\nThis is useful when:\n- Multiple daemons are running and causing race conditions\n- User wants a clean slate before running bd sync\n- Debugging daemon-related issues","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-13T06:34:45.080633-08:00","updated_at":"2025-12-16T01:14:49.501989-08:00","closed_at":"2025-12-14T17:33:03.057089-08:00"} +{"id":"bd-fa2h","title":"šŸ¤ HANDOFF: v0.31.0 released, molecules discussion","description":"Session completed 0.31.0 release and had important molecules discussion.\n\n## Completed\n- v0.31.0 released (deferred status, audit trail, directory labels, etc.)\n- Fixed lint issues, hook version markers, codesigning\n- All CI green, artifacts verified\n\n## Filed Issues\n- bd-usro: Rename template instantiate ā†’ bd mol bond\n- bd-y8bj: Auto-detect identity for bd mail (P1 bug)\n- gt-975: Molecule execution support for polecats/crew\n- gt-976: Crew lifecycle support in Deacon\n\n## Key Insight\nMolecules are the future - TodoWrite is ephemeral, molecules are persistent institutional memory on the world chain. I tried to use TodoWrite for version bump and missed steps (codesigning, MCP verification). Molecules would have caught this.\n\n## Next Steps\n- bd mol bond implementation is priority\n- Max has gt-976 for crew lifecycle (enables automated refresh mid-molecule)\n\nCheck bd ready and gt-975/976 status.","status":"open","priority":2,"issue_type":"message","created_at":"2025-12-20T17:23:09.889562-08:00","updated_at":"2025-12-20T17:23:09.889562-08:00"} +{"id":"bd-cbed9619.4","title":"Make DetectCollisions read-only (separate detection from modification)","description":"**Summary:** The project restructured the collision detection process in the database to separate read-only detection from state modification, eliminating race conditions and improving system reliability. This was achieved by introducing a two-phase approach: first detecting potential collisions, then applying resolution separately.\n\n**Key Decisions:**\n- Create read-only DetectCollisions method\n- Add RenameDetail to track potential issue renames\n- Implement atomic ApplyCollisionResolution function\n- Separate detection logic from database modification\n\n**Resolution:** The refactoring creates a more robust, composable collision handling mechanism that prevents partial failures and maintains database consistency during complex issue import scenarios.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:37:09.652326-07:00","updated_at":"2025-12-17T23:18:29.112637-08:00","dependencies":[{"issue_id":"bd-cbed9619.4","depends_on_id":"bd-cbed9619.5","type":"blocks","created_at":"2025-10-28T18:39:28.285653-07:00","created_by":"daemon"}],"deleted_at":"2025-12-17T23:18:29.112637-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-a0cp","title":"Consider using types.Status in merge package for type safety","description":"The merge package uses string for status comparison (e.g., result.Status == closed, issue.Status == StatusTombstone). The types package defines Status as a type alias with validation. While the merge package needs its own Issue struct for JSONL flexibility, it could import and use types.Status for constants to get compile-time type checking. Current code: if left == closed || right == closed. Could be: if left == string(types.StatusClosed). This is low priority since string comparison works correctly. Files: internal/merge/merge.go:44, 488, 501-521","status":"open","priority":4,"issue_type":"task","created_at":"2025-12-05T16:37:10.690424-08:00","updated_at":"2025-12-05T16:37:10.690424-08:00"} +{"id":"bd-u0sb","title":"Merge: bd-uqfn","description":"branch: polecat/cheedo\ntarget: main\nsource_issue: bd-uqfn\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-20T01:11:52.033964-08:00","updated_at":"2025-12-20T01:11:52.033964-08:00"} +{"id":"bd-x3hi","title":"Support redirect files in .beads/ directory","description":"Gas Town creates polecat worktrees with .beads/redirect files that point to a shared beads database. The bd CLI should:\n\n1. When finding a .beads/ directory, check if it contains a 'redirect' file\n2. If redirect exists, read the relative path and use that as the beads directory\n3. This allows multiple git worktrees to share a single beads database\n\nExample:\n- polecats/alpha/.beads/redirect contains '../../mayor/rig/.beads'\n- bd commands from alpha should use mayor/rig/.beads\n\nCurrently bd ignores redirect files and either uses the local .beads/ or walks up to find a parent .beads/.\n\nRelated: gt-nriy (test message that can't be retrieved due to missing redirect support)","status":"open","priority":1,"issue_type":"feature","created_at":"2025-12-20T21:46:23.415172-08:00","updated_at":"2025-12-20T21:46:23.415172-08:00"} +{"id":"bd-qqc.7","title":"Push release v{{version}} to remote","description":"Push the commit and tag:\n\n```bash\ngit push \u0026\u0026 git push --tags\n```\n\nVerify on GitHub that the tag appears in releases.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T13:00:26.933082-08:00","updated_at":"2025-12-18T23:34:18.630538-08:00","closed_at":"2025-12-18T22:41:41.882956-08:00","dependencies":[{"issue_id":"bd-qqc.7","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T13:00:26.933687-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.7","depends_on_id":"bd-qqc.6","type":"blocks","created_at":"2025-12-18T13:01:12.711161-08:00","created_by":"stevey"}]} +{"id":"bd-t4u1","title":"False positive detection by Kaspersky Antivirus (Trojan)","description":"Kaspersky Antivirus falsely detects beads (bd.exe v0.23.1) as a Trojan (PDM:Trojan.Win32.Generic) and removes it.\nEvent: Malicious object detected\nComponent: System Watcher\nObject name: bd.exe\n","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-20T18:56:12.498187-05:00","updated_at":"2025-11-20T18:56:12.498187-05:00"} +{"id":"bd-89f89fc0","title":"Remove unreachable RPC methods","description":"Several RPC server and client methods are unreachable and should be removed:\n\nServer methods (internal/rpc/server.go):\n- `Server.GetLastImportTime` (line 2116)\n- `Server.SetLastImportTime` (line 2123)\n- `Server.findJSONLPath` (line 2255)\n\nClient methods (internal/rpc/client.go):\n- `Client.Import` (line 311) - RPC import not used (daemon uses autoimport)\n\nEvidence:\n```bash\ngo run golang.org/x/tools/cmd/deadcode@latest -test ./...\n```\n\nImpact: Removes ~80 LOC of unused RPC code","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-28T16:20:02.432202-07:00","updated_at":"2025-12-17T22:58:34.564401-08:00","closed_at":"2025-12-17T22:58:34.564401-08:00"} +{"id":"bd-eyto","title":"Time-dependent tests may be flaky near TTL boundary","description":"Several tombstone merge tests use time.Now() to create test data: time.Now().Add(-24 * time.Hour), time.Now().Add(-60 * 24 * time.Hour), etc. While these work reliably in practice (24h vs 30d TTL has large margin), they could theoretically be flaky if: 1) Tests run slowly, 2) System clock changes during test, 3) TTL constants change. Recommendation: Consider using a fixed reference time or time injection for deterministic tests. Lower priority since current margin is large. Files: internal/merge/merge_test.go:1337-1338, 1352-1353, 1548-1549, 1590-1591","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-05T16:37:02.348143-08:00","updated_at":"2025-12-05T16:37:02.348143-08:00"} +{"id":"bd-2oo.1","title":"Add metadata and thread_id columns to dependencies table","description":"Schema changes:\n- ALTER TABLE dependencies ADD COLUMN metadata TEXT DEFAULT '{}'\n- ALTER TABLE dependencies ADD COLUMN thread_id TEXT DEFAULT ''\n- CREATE INDEX idx_dependencies_thread ON dependencies(thread_id) WHERE thread_id != ''","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:00.468223-08:00","updated_at":"2025-12-18T02:49:10.575133-08:00","closed_at":"2025-12-18T02:49:10.575133-08:00","dependencies":[{"issue_id":"bd-2oo.1","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:00.470012-08:00","created_by":"daemon"}]} +{"id":"bd-au0.7","title":"Audit and standardize JSON output across all commands","description":"Ensure consistent JSON format and error handling when --json flag is used.\n\n**Scope:**\n1. Verify all commands respect --json flag\n2. Standardize success response format\n3. Standardize error response format\n4. Document JSON schemas\n\n**Commands to audit:**\n- Core CRUD: create, update, delete, show, list, search āœ“\n- Queries: ready, blocked, stale, count, stats, status\n- Deps: dep add/remove/tree/cycles\n- Labels: label commands\n- Comments: comments add/list/delete\n- Epics: epic status/close-eligible\n- Export/import: already support --json āœ“\n\n**Testing:**\n- Success cases return valid JSON\n- Error cases return valid JSON (not plain text)\n- Consistent field naming (snake_case vs camelCase)\n- Array vs object wrapping consistency","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-21T21:07:35.304424-05:00","updated_at":"2025-11-21T21:07:35.304424-05:00","dependencies":[{"issue_id":"bd-au0.7","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:35.305663-05:00","created_by":"daemon"}]} +{"id":"bd-tm2p","title":"Polecats get stuck on interactive shell prompts (cp/mv/rm -i)","description":"During swarm operations, polecats frequently get stuck waiting for interactive prompts from shell commands like:\n- cp prompting 'overwrite file? (y/n)'\n- mv prompting 'overwrite file? (y/n)' \n- rm prompting 'remove file?'\n\nThis happens because macOS aliases or shell configs may have -i flags set by default.\n\nRoot cause: Claude Code runs commands that trigger interactive confirmation prompts, but cannot respond to them, causing the agent to hang indefinitely.\n\nObserved in: Multiple polecats during GH issues swarm (Dec 2024)\n- Derrick, Roustabout, Prospector, Warboy all got stuck on y/n prompts\n\nSuggested fixes:\n1. AGENTS.md should instruct agents to always use -f flag with cp/mv/rm\n2. Polecat startup could set shell aliases to use non-interactive versions\n3. bd prime hook could include guidance about non-interactive commands\n4. Consider detecting stuck prompts and auto-recovering","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-14T16:51:24.572271-08:00","updated_at":"2025-12-17T23:13:40.536312-08:00","closed_at":"2025-12-17T19:13:04.074424-08:00"} +{"id":"bd-746","title":"Fix resolvePartialID stub in workflow.go","description":"The resolvePartialID function at workflow.go:921-925 is a stub that just returns the ID unchanged. Should use utils.ResolvePartialID for proper partial ID resolution in direct mode (non-daemon).","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-17T22:22:57.586917-08:00","updated_at":"2025-12-17T22:34:07.270168-08:00","closed_at":"2025-12-17T22:34:07.270168-08:00"} +{"id":"bd-4nqq","title":"Remove dead test code in info_test.go","description":"Code health review found cmd/bd/info_test.go has two tests permanently skipped:\n\n- TestInfoCommand\n- TestInfoCommandNoDaemon\n\nBoth skip with: 'Manual test - bd info command is working, see manual testing'\n\nThese are essentially dead code. Either automate them or remove them entirely.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:27.554019-08:00","updated_at":"2025-12-16T18:17:27.554019-08:00","dependencies":[{"issue_id":"bd-4nqq","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.381694-08:00","created_by":"daemon"}]} +{"id":"bd-2oo.4","title":"Create migration script for edge field to dependency conversion","description":"Migration must:\n1. Read existing JSONL with old fields\n2. Convert field values to dependency records\n3. Write updated JSONL without old fields\n4. Handle edge cases (missing refs, duplicates)\n\nRun via: bd migrate or automatic on bd prime","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:01.760277-08:00","updated_at":"2025-12-18T02:49:10.602446-08:00","closed_at":"2025-12-18T02:49:10.602446-08:00","dependencies":[{"issue_id":"bd-2oo.4","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:01.760694-08:00","created_by":"daemon"}]} +{"id":"bd-14ie","title":"Work on beads-2vn: Add simple built-in beads viewer (GH#6...","description":"Work on beads-2vn: Add simple built-in beads viewer (GH#654). Add bd list --pretty with --watch flag, tree view with priority/status symbols. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:47.305831-08:00","updated_at":"2025-12-20T00:26:12.605897-08:00","closed_at":"2025-12-19T23:23:13.928323-08:00"} +{"id":"bd-indn","title":"bd template commands fail with daemon mode","description":"The `bd template show` and `bd template instantiate` commands fail with 'Error loading template: no database connection' when daemon is running.\n\n**Reproduction:**\n```bash\nbd daemon --start\nbd template show bd-qqc # Error: no database connection\nbd template show bd-qqc --no-daemon # Works\n```\n\n**Expected:** Template commands should work with daemon like other commands.\n\n**Workaround:** Use `--no-daemon` flag.\n\n**Location:** Likely in cmd/bd/template.go - daemon RPC path not implemented for template operations.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-18T22:57:35.16596-08:00","updated_at":"2025-12-18T22:57:35.16596-08:00"} +{"id":"bd-pbh.11","title":"Commit changes and create v0.30.4 tag","description":"```bash\ngit add -A\ngit commit -m \"chore: Bump version to 0.30.4\"\ngit tag -a v0.30.4 -m \"Release v0.30.4\"\n```\n\n\n```verify\ngit describe --tags --exact-match HEAD 2\u003e/dev/null | grep -q 'v0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.056575-08:00","updated_at":"2025-12-17T21:46:46.292166-08:00","closed_at":"2025-12-17T21:46:46.292166-08:00","dependencies":[{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh.10","type":"blocks","created_at":"2025-12-17T21:19:11.234175-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh.2","type":"blocks","created_at":"2025-12-17T21:19:11.245316-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh.3","type":"blocks","created_at":"2025-12-17T21:19:11.255362-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.056934-08:00","created_by":"daemon"}]} +{"id":"bd-vpan","title":"Re: Thread Test 2","description":"Got your message. Testing reply feature.","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:29.144352-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-vpan","depends_on_id":"bd-x36g","type":"replies-to","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} +{"id":"bd-hvng","title":"Merge: bd-w193","description":"branch: polecat/nux\ntarget: main\nsource_issue: bd-w193\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:23:47.496139-08:00","updated_at":"2025-12-19T23:23:47.496139-08:00"} +{"id":"bd-74w1","title":"Consolidate duplicate path-finding utilities (findJSONLPath, findBeadsDir, findGitRoot)","description":"Code health review found these functions defined in multiple places:\n\n- findJSONLPath() in autoflush.go:45-73 and doctor/fix/migrate.go\n- findBeadsDir() in autoimport.go:197-239 (with git worktree handling)\n- findGitRoot() in autoimport.go:242-269 (Windows path conversion)\n\nThe beads package has public FindBeadsDir() and FindJSONLPath() APIs that should be used consistently.\n\nImpact: Bug fixes need to be applied in multiple places. Git worktree handling may not be replicated everywhere.\n\nFix: Consolidate all implementations to use the beads package APIs. Remove duplicates.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-16T18:17:16.694293-08:00","updated_at":"2025-12-16T18:17:16.694293-08:00","dependencies":[{"issue_id":"bd-74w1","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.526122-08:00","created_by":"daemon"}]} +{"id":"bd-sh4c","title":"Improve test coverage for cmd/bd/setup (28.4% ā†’ 50%)","description":"The setup package has only 28.4% test coverage. Setup commands are critical for first-time user experience.\n\nCurrent coverage: 28.4%\nTarget coverage: 50%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:04.409346-08:00","updated_at":"2025-12-13T21:01:18.98833-08:00"} +{"id":"bd-hy9p","title":"Add --body-file flag to bd create for reading descriptions from files","description":"## Problem\n\nCreating issues with long/complex descriptions via CLI requires shell escaping gymnastics:\n\n```bash\n# Current workaround - awkward heredoc quoting\nbd create --title=\"...\" --description=\"$(cat \u003c\u003c'EOF'\n...markdown...\nEOF\n)\"\n\n# Often fails with quote escaping errors in eval context\n# Agents resort to writing temp files then reading them\n```\n\n## Proposed Solution\n\nAdd `--body-file` and `--description-file` flags to read description from a file, matching `gh` CLI pattern.\n\n```bash\n# Natural pattern that aligns with training data\ncat \u003e /tmp/desc.md \u003c\u003c 'EOF'\n...markdown content...\nEOF\n\nbd create --title=\"...\" --body-file=/tmp/desc.md\n```\n\n## Implementation\n\n### 1. Add new flags to `bd create`\n\n```go\ncreateCmd.Flags().String(\"body-file\", \"\", \"Read description from file (use - for stdin)\")\ncreateCmd.Flags().String(\"description-file\", \"\", \"Alias for --body-file\")\n```\n\n### 2. Flag precedence\n\n- If `--body-file` or `--description-file` is provided, read from file\n- If value is `-`, read from stdin\n- Otherwise fall back to `--body` or `--description` flag\n- If neither provided, description is empty (current behavior)\n\n### 3. Error handling\n\n- File doesn't exist ā†’ clear error message\n- File not readable ā†’ clear error message\n- stdin specified but not available ā†’ clear error message\n\n## Benefits\n\nāœ… **Matches training data**: `gh issue create --body-file file.txt` is a common pattern\nāœ… **No shell escaping issues**: File content is read directly\nāœ… **Works with any content**: Markdown, special characters, quotes, etc.\nāœ… **Agent-friendly**: Agents already write complex content to temp files\nāœ… **User-friendly**: Easier for humans too when pasting long descriptions\n\n## Related Commands\n\nConsider adding similar support to:\n- `bd update --body-file` (for updating descriptions)\n- `bd comment --body-file` (if/when we add comments)\n\n## Examples\n\n```bash\n# From file\nbd create --title=\"Add new feature\" --body-file=feature.md\n\n# From stdin\necho \"Quick description\" | bd create --title=\"Bug fix\" --body-file=-\n\n# With other flags\nbd create \\\n --title=\"Security issue\" \\\n --type=bug \\\n --priority=0 \\\n --body-file=security-report.md \\\n --label=security\n```\n\n## Testing\n\n- Test with normal files\n- Test with stdin (`-`)\n- Test with non-existent files (error handling)\n- Test with binary files (should handle gracefully)\n- Test with empty files (valid - empty description)\n- Test that `--description-file` and `--body-file` are equivalent aliases","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-11-22T00:02:08.762684-08:00","updated_at":"2025-12-17T23:13:40.536024-08:00","closed_at":"2025-12-17T17:28:52.505239-08:00"} +{"id":"bd-pbh.5","title":"Update .claude-plugin/marketplace.json to 0.30.4","description":"Update version field in .claude-plugin/marketplace.json:\n```json\n\"version\": \"0.30.4\"\n```\n\n\n```verify\njq -e '.plugins[0].version == \"0.30.4\"' .claude-plugin/marketplace.json\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.985619-08:00","updated_at":"2025-12-17T21:46:46.239122-08:00","closed_at":"2025-12-17T21:46:46.239122-08:00","dependencies":[{"issue_id":"bd-pbh.5","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.985942-08:00","created_by":"daemon"}]} +{"id":"bd-6fe4622f","title":"Remove unreachable utility functions","description":"Several small utility functions are unreachable:\n\nFiles to clean:\n1. `internal/storage/sqlite/hash.go` - `computeIssueContentHash` (line 17)\n - Check if entire file can be deleted if only contains this function\n\n2. `internal/config/config.go` - `FileUsed` (line 151)\n - Delete unused config helper\n\n3. `cmd/bd/git_sync_test.go` - `verifyIssueOpen` (line 300)\n - Delete dead test helper\n\n4. `internal/compact/haiku.go` - `HaikuClient.SummarizeTier2` (line 81)\n - Tier 2 summarization not implemented\n - Options: implement feature OR delete method\n\nImpact: Removes 50-100 LOC depending on decisions","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-28T16:20:02.434573-07:00","updated_at":"2025-12-17T22:58:34.563993-08:00","closed_at":"2025-12-17T22:58:34.563993-08:00"} +{"id":"bd-nl2","title":"No logging/debugging for tombstone resurrection events","description":"Per the design document bd-zvg Open Question 1: Should resurrection log a warning? Recommendation was Yes. Currently, when an expired tombstone loses to a live issue (resurrection), there is no logging or debugging output. This makes it hard to understand why an issue reappeared. Recommendation: Add optional debug logging when resurrection occurs, e.g., Issue bd-abc resurrected (tombstone expired). Files: internal/merge/merge.go:359-366, 371-378, 400-405, 410-415","status":"open","priority":4,"issue_type":"feature","created_at":"2025-12-05T16:36:52.27525-08:00","updated_at":"2025-12-05T16:36:52.27525-08:00"} +{"id":"bd-au0.5","title":"Add date and priority filters to bd search","description":"Add filter parity with bd list for consistent querying.\n\n**Missing filters to add:**\n- --priority, --priority-min, --priority-max\n- --created-after, --created-before\n- --updated-after, --updated-before\n- --closed-after, --closed-before\n- --empty-description, --no-assignee, --no-labels\n- --desc-contains, --notes-contains\n\n**Files to modify:**\n- cmd/bd/search.go\n- internal/rpc/protocol.go (SearchArgs)\n- internal/storage/storage.go (Search method)\n\n**Testing:**\n- All filter combinations\n- Date format parsing\n- Daemon and direct mode","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-21T21:07:05.496726-05:00","updated_at":"2025-11-21T21:07:05.496726-05:00","dependencies":[{"issue_id":"bd-au0.5","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:05.497762-05:00","created_by":"daemon"}]} +{"id":"bd-d148","title":"GH#483: Pre-commit hook fails unnecessarily when .beads removed","description":"Pre-commit hook fails on bd sync when .beads directory exists but user is on branch without beads. Should exit gracefully. See GitHub issue #483.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:40.049785-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-qqc.10","title":"Upgrade local Homebrew installation","description":"Upgrade bd via Homebrew:\n\n```bash\nbrew update\nbrew upgrade bd\n/opt/homebrew/bin/bd version # Verify shows {{version}}\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:37.60241-08:00","updated_at":"2025-12-18T23:07:55.686598-08:00","closed_at":"2025-12-18T22:52:00.331429-08:00","dependencies":[{"issue_id":"bd-qqc.10","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:37.603893-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.10","depends_on_id":"bd-qqc.9","type":"blocks","created_at":"2025-12-18T22:43:21.458817-08:00","created_by":"daemon"}]} {"id":"bd-yck","title":"Fix checkExistingBeadsData to be worktree-aware","description":"The checkExistingBeadsData function in cmd/bd/init.go checks for .beads in the current working directory, but for worktrees it should check the main repository root instead. This prevents proper worktree compatibility.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-07T16:48:32.082776345-07:00","updated_at":"2025-12-07T16:48:32.082776345-07:00"} -{"id":"bd-ykd9","title":"Add bd doctor --fix flag to automatically repair issues","description":"Implement a --fix flag for bd doctor that can automatically repair detected issues.\n\nRequirements:\n- Add --fix flag to bd doctor command\n- Show all fixable issues and prompt for confirmation before applying fixes\n- Organize fix implementations under doctor/fix/\u003ctype_of_fix\u003e.go\n- Each fix type should have its own file (e.g., doctor/fix/hooks.go, doctor/fix/sync.go)\n- Display what will be fixed and ask user to confirm (Y/n) before proceeding\n- Support fixing issues like:\n - Missing or broken git hooks\n - Sync problems with remote\n - File permission issues\n - Any other auto-repairable issues doctor detects\n\nImplementation notes:\n- Maintain separation between detection (existing doctor code) and repair (new fix code)\n- Each fix should be idempotent and safe to run multiple times\n- Provide clear output about what was fixed\n- Log any fixes that fail with actionable error messages","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-14T18:17:48.411264-08:00","updated_at":"2025-11-14T18:17:58.88609-08:00"} -{"id":"bd-z86n","title":"Code Review: PR #551 - Persist close_reason to issues table","description":"Code review of PR #551 which fixes close_reason persistence bug.\n\n## Summary\nThe PR correctly fixes a bug where close_reason was only stored in the events table, not in the issues.close_reason column. This caused `bd show --json` to return empty close_reason.\n\n## What Was Fixed\n- āœ… CloseIssue now updates both close_reason and closed_at\n- āœ… ReOpenIssue clears both close_reason and closed_at\n- āœ… Comprehensive tests added for both storage and CLI layers\n- āœ… Clear documentation in queries.go about dual storage strategy\n\n## Quality Assessment\nāœ… Tests cover both storage layer and CLI JSON output\nāœ… Handles reopen case (clearing close_reason)\nāœ… Good comments explaining dual-storage design\nāœ… No known issues\n\n## Potential Followups\nSee linked issues for suggestions.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:06.887069-08:00","updated_at":"2025-12-14T14:25:06.887069-08:00"} -{"id":"bd-z8a6","title":"bd delete --from-file should add deleted issues to deletions manifest","description":"When using bd delete --from-file to bulk delete issues, the deleted issue IDs are not being added to the deletions.jsonl manifest.\n\nThis causes those issues to be resurrected during bd sync when git history scanning finds them in old commits.\n\nExpected: All deleted issues should be added to deletions.jsonl so they wont be reimported from git history.\n\nWorkaround: Manually add deletion records to deletions.jsonl.","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T01:48:14.099855-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-zc3","title":"Add --pinned and --no-pinned flags to bd list","description":"Add filtering flags to bd list: --pinned shows only pinned issues, --no-pinned excludes pinned issues. Default behavior shows all issues with a pin indicator.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:29.518028-08:00","updated_at":"2025-12-18T23:33:29.518028-08:00","dependencies":[{"issue_id":"bd-zc3","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.256764-08:00","created_by":"daemon"},{"issue_id":"bd-zc3","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.486361-08:00","created_by":"daemon"}]} -{"id":"bd-zclk","title":"Commit and push release","description":"git add -A \u0026\u0026 git commit \u0026\u0026 git push to trigger CI","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.6489-08:00","updated_at":"2025-12-19T22:57:58.978614-08:00","closed_at":"2025-12-19T22:57:58.978614-08:00","close_reason":"Pushed to main","dependencies":[{"issue_id":"bd-zclk","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.650043-08:00","created_by":"stevey"},{"issue_id":"bd-zclk","depends_on_id":"bd-hzvz","type":"blocks","created_at":"2025-12-19T22:56:48.650488-08:00","created_by":"stevey"}]} +{"id":"bd-cb64c226.9","title":"Remove Cache-Related Tests","description":"Delete or update tests that assume multi-repo caching","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:44.511897-07:00","updated_at":"2025-12-17T23:18:29.110385-08:00","deleted_at":"2025-12-17T23:18:29.110385-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-d73u","title":"Re: Thread Test 2","description":"Great! Thread is working well.","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:46.655093-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-d73u","depends_on_id":"bd-vpan","type":"replies-to","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} +{"id":"bd-muw","title":"Add empty tasks validation in workflow create","description":"workflow.go:321 will panic if wf.Tasks is empty. Add validation that len(wf.Tasks) \u003e 0 before accessing wf.Tasks[0].","status":"closed","priority":3,"issue_type":"bug","created_at":"2025-12-17T22:23:00.75707-08:00","updated_at":"2025-12-17T22:34:07.281133-08:00","closed_at":"2025-12-17T22:34:07.281133-08:00"} +{"id":"bd-05a8","title":"Split large cmd/bd files: doctor.go (2948 lines), sync.go (2121 lines)","description":"Code health review found several oversized files:\n\n1. doctor.go - 2948 lines, 48 functions mixed together\n - Should split into doctor/checks/*.go for individual diagnostics\n - applyFixes() and previewFixes() are nearly identical\n\n2. sync.go - 2121 lines\n - ZFC (Zero Flush Check) logic embedded inline (lines 213-247)\n - Multiple mode handlers should be extracted\n\n3. init.go - 1732 lines\n4. compact.go - 1097 lines\n5. show.go - 1069 lines\n\nRecommendation: Extract into focused sub-packages or split into logical files.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-16T18:17:18.169927-08:00","updated_at":"2025-12-16T18:17:18.169927-08:00","dependencies":[{"issue_id":"bd-05a8","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.846503-08:00","created_by":"daemon"}]} +{"id":"bd-589x","title":"HANDOFF: Version 0.30.7 release in progress","description":"## Context\nDoing a 0.30.7 patch release with bug fixes.\n\n## What's done\n- Fixed #657: bd graph nil pointer crash (graph.go:102)\n- Fixed #652: Windows npm installer file lock (postinstall.js)\n- Updated CHANGELOG.md and info.go\n- Pushed to main, CI running (run 20390861825)\n- Created version-bump molecule template (bd-6s61) and instantiated for 0.30.7 (bd-8pyn)\n\n## In progress\nMolecule bd-8pyn has 3 remaining tasks:\n - bd-dxo7: Wait for CI to pass\n - bd-7l70: Verify release artifacts \n - bd-5c91: Update local installation\n\n## Check CI\n gh run list --repo steveyegge/beads --limit 1\n gh run view 20390861825 --repo steveyegge/beads\n\n## New feature filed\nbd-n777: Timer beads for scheduled agent callbacks\nDesign for Deacon-managed timers that can interrupt agents via tmux\n\n## Resume commands\n bd --no-daemon show bd-8pyn\n gh run list --repo steveyegge/beads --limit 1","status":"closed","priority":2,"issue_type":"message","created_at":"2025-12-19T23:06:14.902334-08:00","updated_at":"2025-12-20T00:49:51.927111-08:00","closed_at":"2025-12-20T00:25:59.596546-08:00"} +{"id":"bd-aydr.6","title":"Add unit tests for reset package","description":"Comprehensive unit tests for internal/reset package.\n\n## Test Cases\n\n### ValidateState tests\n- .beads/ exists ā†’ success\n- .beads/ missing ā†’ appropriate error\n- git dirty state detection\n\n### CountImpact tests \n- Empty .beads/ ā†’ zero counts\n- With issues ā†’ correct count (open vs closed)\n- With tombstones ā†’ correct count\n- Returns HasUncommitted correctly\n\n### Backup tests\n- Creates backup with correct timestamp format\n- Preserves all files and permissions\n- Returns correct path\n- Handles missing .beads/ gracefully\n- Errors on pre-existing backup dir\n\n### Git operation tests\n- CheckGitState detects dirty, detached, not-a-repo\n- GitRemoveBeads removes correct files\n- GitCommitReset creates commit with message\n- Operations skip gracefully when not in git repo\n\n### Reset tests (with mocks/temp dirs)\n- Soft reset removes files, calls init\n- Hard reset includes git operations\n- Dry run doesn't modify anything\n- SkipInit flag prevents re-initialization\n- Daemon killall is called\n- Backup is created when requested\n\n## Approach\n- Can start with interface definitions (TDD style)\n- Use testify for assertions\n- Create temp directories for isolation\n- Mock git operations where needed\n- Test completion depends on implementation tasks\n\n## File Location\n`internal/reset/reset_test.go`\n`internal/reset/backup_test.go`\n`internal/reset/git_test.go`","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:57.01739+11:00","updated_at":"2025-12-13T10:13:32.611698+11:00","closed_at":"2025-12-13T09:59:20.820314+11:00","dependencies":[{"issue_id":"bd-aydr.6","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:57.017813+11:00","created_by":"daemon"}]} +{"id":"bd-0vg","title":"Pinned issues: persistent context markers","description":"Add ability to pin issues so they remain visible and are excluded from work-finding commands. Pinned issues serve as persistent context markers (handoffs, architectural notes, recovery instructions) that should not be claimed as work items.\n\nUse Cases:\n1. Handoff messages - Pin session handoffs so new agents always see them\n2. Architecture decisions - Pin ADRs or design notes for reference \n3. Recovery context - Pin amnesia-cure notes that help agents orient\n\nCore commands: bd pin, bd unpin, bd list --pinned/--no-pinned","status":"open","priority":1,"issue_type":"epic","created_at":"2025-12-18T23:33:10.911092-08:00","updated_at":"2025-12-18T23:33:17.882415-08:00"} {"id":"bd-ziy5","title":"GH#409: bd init uses issues.jsonl but docs say beads.jsonl","description":"bd init creates config referencing issues.jsonl but README/docs reference beads.jsonl as canonical. Standardize naming. See GitHub issue #409.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:58.109954-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-zwtq","title":"Run bd doctor at end of bd init to verify setup","description":"Run bd doctor diagnostics at end of bd init (after line 398 in init.go). If issues found, warn user immediately: 'āš  Setup incomplete. Run bd doctor --fix to complete setup.' Catches configuration problems before user encounters them in normal workflow.","status":"open","priority":1,"issue_type":"feature","created_at":"2025-11-21T23:16:09.596778-08:00","updated_at":"2025-11-21T23:16:27.781976-08:00","dependencies":[{"issue_id":"bd-zwtq","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:09.597617-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-cbed9619.3","title":"Implement global N-way collision resolution algorithm","description":"**Summary:** Replaced pairwise collision resolution with a global N-way algorithm that deterministically resolves issue ID conflicts across multiple clones. The new approach groups collisions, deduplicates by content hash, and assigns sequential IDs to ensure consistent synchronization.\n\n**Key Decisions:**\n- Use content hash for global, stable sorting\n- Group collisions by base ID\n- Assign sequential IDs based on sorted unique versions\n- Eliminate order-dependent remapping logic\n\n**Resolution:** Implemented ResolveNWayCollisions function that guarantees deterministic issue ID assignment across multiple synchronization scenarios, solving the core challenge of maintaining consistency in distributed systems with potential conflicts.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:37:42.85616-07:00","updated_at":"2025-12-17T23:18:29.112335-08:00","dependencies":[{"issue_id":"bd-cbed9619.3","depends_on_id":"bd-cbed9619.5","type":"blocks","created_at":"2025-10-28T18:39:28.30886-07:00","created_by":"daemon"},{"issue_id":"bd-cbed9619.3","depends_on_id":"bd-cbed9619.4","type":"blocks","created_at":"2025-10-28T18:39:28.336312-07:00","created_by":"daemon"}],"deleted_at":"2025-12-17T23:18:29.112335-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-0zp7","title":"Add missing hook calls in mail reply and ack","description":"The mail commands are missing hook calls:\n\n1. runMailReply (mail.go:525-672) creates a message but doesn't call hookRunner.Run(hooks.EventMessage, ...) after creating the reply in direct mode (around line 640)\n\n2. runMailAck (mail.go:432-523) closes messages but doesn't call hookRunner.Run(hooks.EventClose, ...) after closing each message (around line 487 for daemon mode, 493 for direct mode)\n\nThis means GGT hooks won't fire for replies or message acknowledgments.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T20:52:53.069412-08:00","updated_at":"2025-12-17T23:13:40.532054-08:00","closed_at":"2025-12-17T17:22:59.368024-08:00"} +{"id":"bd-pbh.21","title":"Final release verification","description":"Verify all release artifacts are accessible:\n\n- [ ] `bd --version` shows 0.30.4\n- [ ] `bd version --daemon` shows 0.30.4\n- [ ] GitHub release exists: https://github.com/steveyegge/beads/releases/tag/v0.30.4\n- [ ] `brew upgrade beads \u0026\u0026 bd --version` shows 0.30.4 (if using Homebrew)\n- [ ] `pip show beads-mcp` shows 0.30.4\n- [ ] npm package available at 0.30.4\n- [ ] `bd info --whats-new` shows 0.30.4 notes\n\nRun final checks:\n```bash\nbd --version\nbd version --daemon\npip show beads-mcp | grep Version\nbd info --whats-new\n```\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.141249-08:00","updated_at":"2025-12-17T21:46:46.390985-08:00","closed_at":"2025-12-17T21:46:46.390985-08:00","dependencies":[{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.16","type":"blocks","created_at":"2025-12-17T21:19:11.398347-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.141549-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.18","type":"blocks","created_at":"2025-12-17T21:19:11.364839-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.19","type":"blocks","created_at":"2025-12-17T21:19:11.373656-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.20","type":"blocks","created_at":"2025-12-17T21:19:11.382-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.15","type":"blocks","created_at":"2025-12-17T21:19:11.389733-08:00","created_by":"daemon"}]} +{"id":"bd-kpy","title":"Sync race: rebase-based divergence recovery resurrects tombstones","description":"## Problem\nWhen two repos sync simultaneously, tombstones can be resurrected:\n\n1. Repo A deletes issue (creates tombstone), pushes to sync branch\n2. Repo B (with 'closed' status) exports and tries to push\n3. Push fails (non-fast-forward)\n4. fetchAndRebaseInWorktree does git rebase\n5. Git rebase applies B's 'closed' patch on top of A's 'tombstone'\n6. TEXT-level rebase doesn't invoke beads merge driver\n7. 'closed' overwrites 'tombstone' = resurrection\n\n## Root Cause\nCommitToSyncBranch uses git rebase for divergence recovery, but rebase is text-level, not content-level. The proper content-level merge in PullFromSyncBranch handles tombstones correctly, but it runs AFTER the problematic push.\n\n## Proposed Fix\nOption 1: Don't push in CommitToSyncBranch - let PullFromSyncBranch handle merge+push\nOption 2: Replace git rebase with content-level merge in fetchAndRebaseInWorktree\nOption 3: Reorder sync steps: Export ā†’ Pull/Merge ā†’ Commit ā†’ Push\n\n## Workaround Applied\nExcluded tombstones from orphan detection warnings (commit 1e97d9cc).\n\nSee also: bd-3852 (Add orphan detection migration)","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-17T23:29:33.049272-08:00","updated_at":"2025-12-17T23:29:33.049272-08:00"} +{"id":"bd-28db","title":"Add 'bd status' command for issue database overview","description":"Implement a bd status command that provides a quick snapshot of the issue database state, similar to how git status shows working tree state.\n\nExpected output: Show summary including counts by state (open, in-progress, blocked, closed), recent activity (last 7 days), and quick overview without needing multiple queries.\n\nExample output showing issue counts, recent activity stats, and pointer to bd list for details.\n\nProposed options: --all (show all issues), --assigned (show issues assigned to current user), --json (JSON format output)\n\nUse cases: Quick project health check, onboarding for new contributors, integration with shell prompts or CI/CD, daily standup reference","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-02T17:25:59.203549-08:00","updated_at":"2025-11-02T17:25:59.203549-08:00"} +{"id":"bd-ola6","title":"Implement transaction retry logic for SQLITE_BUSY","description":"BEGIN IMMEDIATE fails immediately on SQLITE_BUSY instead of retrying with exponential backoff.\n\nLocation: internal/storage/sqlite/sqlite.go:223-225\n\nProblem:\n- Under concurrent write load, BEGIN IMMEDIATE can fail with SQLITE_BUSY\n- Current implementation fails immediately instead of retrying\n- Results in spurious failures under normal concurrent usage\n\nSolution: Implement exponential backoff retry:\n- Retry up to N times (e.g., 5)\n- Backoff: 10ms, 20ms, 40ms, 80ms, 160ms\n- Check for context cancellation between retries\n- Only retry on SQLITE_BUSY/database locked errors\n\nImpact: Spurious failures under concurrent write load\n\nEffort: 3 hours","status":"open","priority":1,"issue_type":"feature","created_at":"2025-11-16T14:51:31.247147-08:00","updated_at":"2025-11-16T14:51:31.247147-08:00"} +{"id":"bd-r6a.4","title":"Add bd template list command","description":"Add a convenience command to list available templates:\n\nbd template list\n\nThis is equivalent to 'bd list --label=template' but more discoverable.\nCould also show variable placeholders found in each template.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T22:43:47.525316-08:00","updated_at":"2025-12-17T23:02:45.700582-08:00","closed_at":"2025-12-17T23:02:45.700582-08:00","dependencies":[{"issue_id":"bd-r6a.4","depends_on_id":"bd-r6a.2","type":"blocks","created_at":"2025-12-17T22:44:03.474353-08:00","created_by":"daemon"},{"issue_id":"bd-r6a.4","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:47.525743-08:00","created_by":"daemon"}]} +{"id":"bd-5qim","title":"Optimize GetReadyWork performance - 752ms on 10K database (target: \u003c50ms)","notes":"# Performance Analysis (10K Issue Database)\n\nAnalyzed using CPU profiles from benchmark suite on Apple M2 Pro.\n\n## Operation Performance\n\n| Operation | Time | Allocations | Memory |\n|----------------------------------|---------|-------------|--------|\n| bd ready (GetReadyWork) | ~752ms | 167,466 | 16MB |\n| bd list (SearchIssues no filter) | ~11.6ms | 89,214 | 5.8MB |\n| bd list (SearchIssues filtered) | ~9.2ms | 62,365 | 3.5MB |\n| bd create (CreateIssue) | ~2.6ms | 146 | 8.6KB |\n| bd update (UpdateIssue) | ~0.32ms | 364 | 15KB |\n| bd close (UpdateIssue) | ~0.32ms | 364 | 15KB |\n\n**Target: \u003c50ms for all operations on 10K database**\n\n**Current issue: GetReadyWork is 15x over target (752ms vs 50ms)**\n\n## Root Cause\n\nGetReadyWork (internal/storage/sqlite/ready.go:90-128) uses recursive CTE to propagate blocking:\n- 65x slower than SearchIssues\n- Recalculates entire blocked issue tree on every call\n- Algorithm:\n 1. Find directly blocked issues via 'blocks' dependencies\n 2. Recursively propagate blockage to descendants (max depth: 50)\n 3. Exclude all blocked issues from results\n\n## CPU Profile Analysis\n\n- Database syscalls (pthread_cond_signal, syscall6): ~75%\n- SQLite engine overhead: inherent to recursive CTE\n- Application code (query construction): \u003c1%\n\n**Bottleneck is the recursive CTE query execution, not application code.**\n\n## Optimization Recommendations\n\n### High Impact (Likely to achieve \u003c50ms target)\n\n1. **Cache blocked issue calculation**\n - Add `blocked_issues` table updated on dependency changes\n - Trade write complexity for read speed (ready called \u003e\u003e dependency changes)\n - Eliminates recursive CTE on every read\n\n2. **Add/verify database indexes**\n ```sql\n CREATE INDEX IF NOT EXISTS idx_dependencies_blocked \n ON dependencies(issue_id, type, depends_on_id);\n CREATE INDEX IF NOT EXISTS idx_issues_status \n ON issues(status);\n ```\n\n### Medium Impact\n\n3. **Reduce allocations** (167K allocations for GetReadyWork)\n - Profile `scanIssues()` for object pooling opportunities\n - Reuse slice capacity for repeated calls\n\n### Low Impact (Not recommended)\n- Query optimization for CRUD operations (already \u003c3ms)\n- Connection pooling tuning (not showing in profiles)\n\n## Verification\n\nRun benchmarks to validate optimization:\n```bash\nmake bench-quick\ngo tool pprof -http=:8080 internal/storage/sqlite/bench-cpu-*.prof\n```\n\nProfile files automatically generated in `internal/storage/sqlite/`.","status":"closed","issue_type":"bug","created_at":"2025-11-14T09:02:46.507526-08:00","updated_at":"2025-12-17T23:13:40.534258-08:00","closed_at":"2025-12-17T16:21:37.918868-08:00"} +{"id":"bd-z86n","title":"Code Review: PR #551 - Persist close_reason to issues table","description":"Code review of PR #551 which fixes close_reason persistence bug.\n\n## Summary\nThe PR correctly fixes a bug where close_reason was only stored in the events table, not in the issues.close_reason column. This caused `bd show --json` to return empty close_reason.\n\n## What Was Fixed\n- āœ… CloseIssue now updates both close_reason and closed_at\n- āœ… ReOpenIssue clears both close_reason and closed_at\n- āœ… Comprehensive tests added for both storage and CLI layers\n- āœ… Clear documentation in queries.go about dual storage strategy\n\n## Quality Assessment\nāœ… Tests cover both storage layer and CLI JSON output\nāœ… Handles reopen case (clearing close_reason)\nāœ… Good comments explaining dual-storage design\nāœ… No known issues\n\n## Potential Followups\nSee linked issues for suggestions.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:06.887069-08:00","updated_at":"2025-12-14T14:25:06.887069-08:00"} +{"id":"bd-tvu3","title":"Improve test coverage for internal/beads (48.1% ā†’ 70%)","description":"The beads package is a core package with 48.1% coverage. As the primary package for issue management, it should have at least 70% coverage.\n\nCurrent coverage: 48.1%\nTarget coverage: 70%","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-13T20:42:59.739142-08:00","updated_at":"2025-12-13T21:01:14.874359-08:00"} +{"id":"bd-pbh.7","title":"Update beads_mcp/__init__.py to 0.30.4","description":"Update __version__ in integrations/beads-mcp/src/beads_mcp/__init__.py:\n```python\n__version__ = \"0.30.4\"\n```\n\n\n```verify\ngrep -q '__version__ = \"0.30.4\"' integrations/beads-mcp/src/beads_mcp/__init__.py\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.005334-08:00","updated_at":"2025-12-17T21:46:46.254885-08:00","closed_at":"2025-12-17T21:46:46.254885-08:00","dependencies":[{"issue_id":"bd-pbh.7","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.005699-08:00","created_by":"daemon"}]} +{"id":"bd-xctp","title":"GH#519: bd sync fails when sync.branch is currently checked-out branch","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:06:05.319281-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-kyo","title":"Run tests and linting","description":"Run the full test suite and linter:\n\n```bash\nTMPDIR=/tmp go test -short ./...\ngolangci-lint run ./...\n```\n\nFix any failures. Linting warnings acceptable (see LINTING.md).","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:59.290588-08:00","updated_at":"2025-12-18T22:44:36.570262-08:00","closed_at":"2025-12-18T22:44:36.570262-08:00","dependencies":[{"issue_id":"bd-kyo","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.370234-08:00","created_by":"daemon"},{"issue_id":"bd-kyo","depends_on_id":"bd-8hy","type":"blocks","created_at":"2025-12-18T22:43:20.570742-08:00","created_by":"daemon"}]} +{"id":"bd-uutv","title":"Work on beads-rs0: Namepool configuration for themed pole...","description":"Work on beads-rs0: Namepool configuration for themed polecat names. See bd show beads-rs0 for full details.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T21:49:48.129778-08:00","updated_at":"2025-12-19T21:59:25.565894-08:00","closed_at":"2025-12-19T21:59:25.565894-08:00"} +{"id":"bd-aydr","title":"Add bd reset command for clean slate restart","description":"Implement a `bd reset` command to reset beads to a clean starting state.\n\n## Context\nGitHub issue #479 - users sometimes get beads into an invalid state after updates, and there's no clean way to start fresh. The git backup/restore mechanism that protects against accidental deletion also makes it hard to intentionally reset.\n\n## Design\n\n### Command Interface\n```\nbd reset [--hard] [--force] [--backup] [--dry-run] [--no-init]\n```\n\n| Flag | Effect |\n|------|--------|\n| `--hard` | Also remove from git index and commit |\n| `--force` | Skip confirmation prompt |\n| `--backup` | Create `.beads-backup-{timestamp}/` first |\n| `--dry-run` | Preview what would happen |\n| `--no-init` | Don't re-initialize after clearing |\n\n### Reset Levels\n1. **Soft Reset (default)** - Kill daemons, clear .beads/, re-init. Git history unchanged.\n2. **Hard Reset (`--hard`)** - Also git rm and commit the removal, then commit fresh state.\n\n### Implementation Flow\n1. Validate .beads/ exists\n2. If not --force: show impact summary, prompt confirmation\n3. If --backup: copy .beads/ to .beads-backup-{timestamp}/\n4. Kill daemons\n5. If --hard: git rm + commit\n6. rm -rf .beads/*\n7. If not --no-init: bd init (and git add+commit if --hard)\n8. Print summary\n\n### Safety Mechanisms\n- Confirmation prompt (skip with --force)\n- Impact summary (issue/tombstone counts)\n- Backup option\n- Dry-run preview\n- Git dirty check warning\n\n### Code Structure\n- `cmd/bd/reset.go` - CLI command\n- `internal/reset/` - Core logic package","status":"closed","priority":2,"issue_type":"epic","created_at":"2025-12-13T08:44:01.38379+11:00","updated_at":"2025-12-13T06:24:29.561294-08:00","closed_at":"2025-12-13T10:18:19.965287+11:00"} +{"id":"bd-r6a.2","title":"Implement subgraph cloning with variable substitution","description":"Core implementation of template instantiation:\n\n1. Add `bd template instantiate \u003ctemplate-id\u003e [--var key=value]...` command\n2. Implement subgraph loading:\n - Load template epic\n - Recursively load all children (and their children)\n - Load all dependencies between issues in the subgraph\n3. Implement variable substitution:\n - Scan titles and descriptions for `{{name}}` patterns\n - Replace with provided values\n - Error on missing required variables (or prompt interactively)\n4. Implement cloning:\n - Generate new IDs for all issues\n - Create cloned issues with substituted text\n - Remap and create dependencies\n5. Return the new epic ID\n\nConsider adding `--dry-run` flag to preview what would be created.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T22:43:25.179848-08:00","updated_at":"2025-12-17T23:02:29.034444-08:00","closed_at":"2025-12-17T23:02:29.034444-08:00","dependencies":[{"issue_id":"bd-r6a.2","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:25.180286-08:00","created_by":"daemon"},{"issue_id":"bd-r6a.2","depends_on_id":"bd-r6a.1","type":"blocks","created_at":"2025-12-17T22:44:03.15413-08:00","created_by":"daemon"}]} +{"id":"bd-2vh3","title":"Ephemeral issue cleanup and history compaction","description":"## Problem\n\nBeads history grows without bound. Every message, handoff, work assignment\nstays in issues.jsonl forever. Enterprise users will balk at \"git as database.\"\n\n## Solution: Two-Tier Cleanup\n\n### Tier 1: Ephemeral Cleanup (v1)\n\nbd cleanup --ephemeral --closed\n\n- Deletes closed issues where ephemeral=true from issues.jsonl\n- Safe: only removes explicitly marked ephemeral + closed\n- Preserves git history (commits still exist)\n- Run after swarm completion\n\n### Tier 2: History Compaction (v2)\n\nbd compact --squash\n\n- Rewrites issues.jsonl to remove tombstones\n- Optionally squashes git history (interactive rebase equivalent)\n- Preserves Merkle proofs for deleted items\n- Advanced: cold storage tiering\n\n## HOP Context\n\n| Layer | HOP Role | Persistence |\n|-------|----------|-------------|\n| Execution trace | None | Ephemeral |\n| Work scaffolding | None | Summarizable |\n| Work outcome | CV entry | Permanent |\n| Validation record | Stake proof | Permanent |\n\n\"Execution is ephemeral. Outcomes are permanent. You can't squash your CV.\"\n\n## Success Criteria\n\n- After cleanup --ephemeral: issues.jsonl only contains persistent work\n- Work outcomes preserved (CV entries)\n- Validation records preserved (stake proofs)\n- Execution scaffolding removed (transient coordination)","status":"open","priority":1,"issue_type":"feature","created_at":"2025-12-20T21:02:20.101367-08:00","updated_at":"2025-12-20T21:02:20.101367-08:00"} +{"id":"bd-n4td","title":"Add warning when staleness check errors","description":"## Problem\n\nWhen ensureDatabaseFresh() calls CheckStaleness() and it errors (corrupted metadata, permission issues, etc.), we silently proceed with potentially stale data.\n\n**Location:** cmd/bd/staleness.go:27-32\n\n**Scenarios:**\n- Corrupted metadata table\n- Database locked by another process \n- Permission issues reading JSONL file\n- Invalid last_import_time format in DB\n\n## Current Code\n\n```go\nisStale, err := autoimport.CheckStaleness(ctx, store, dbPath)\nif err \\!= nil {\n // If we can't determine staleness, allow operation to proceed\n // (better to show potentially stale data than block user)\n return nil\n}\n```\n\n## Fix\n\n```go\nisStale, err := autoimport.CheckStaleness(ctx, store, dbPath)\nif err \\!= nil {\n fmt.Fprintf(os.Stderr, \"Warning: Could not verify database freshness: %v\\n\", err)\n fmt.Fprintf(os.Stderr, \"Proceeding anyway. Data may be stale.\\n\\n\")\n return nil\n}\n```\n\n## Impact\nMedium - users should know when staleness check fails\n\n## Effort\nEasy - 5 minutes","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-11-20T20:16:34.889997-05:00","updated_at":"2025-12-17T23:13:40.531031-08:00","closed_at":"2025-12-17T19:11:12.950618-08:00","dependencies":[{"issue_id":"bd-n4td","depends_on_id":"bd-2q6d","type":"blocks","created_at":"2025-11-20T20:18:20.154723-05:00","created_by":"stevey"}]} +{"id":"bd-aay","title":"Warn on invalid depends_on references in workflow templates","description":"workflow.go:780-781 silently skips invalid dependency names. Should log a warning when a depends_on reference doesn't match any task ID in the template.","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T22:23:04.325253-08:00","updated_at":"2025-12-17T22:34:07.309495-08:00","closed_at":"2025-12-17T22:34:07.309495-08:00"} +{"id":"bd-qioh","title":"Standardize error handling: replace direct fmt.Fprintf+os.Exit with FatalError","description":"Code health review found inconsistent error handling patterns:\n\nPattern A (preferred): FatalError() from errors.go:21-24\nPattern B (inconsistent): Direct fmt.Fprintf(os.Stderr) + os.Exit(1)\n\nAffected files:\n- delete.go:35-49 uses direct pattern\n- create.go:213 ignores error silently\n- Various other commands\n\nFix: Standardize on FatalError() wrapper for consistent error messages and testability.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-16T18:17:19.309394-08:00","updated_at":"2025-12-16T18:17:19.309394-08:00","dependencies":[{"issue_id":"bd-qioh","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.953559-08:00","created_by":"daemon"}]} +{"id":"bd-7m16","title":"GH#519: bd sync fails when sync.branch is currently checked-out branch","description":"bd sync tries to create worktree for sync.branch even when already on that branch. Should commit directly instead. See GitHub issue #519.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:36.613211-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-kwro.5","title":"Graph Link: supersedes for version chains","description":"Implement supersedes link type for version tracking.\n\nNew command:\n- bd supersede \u003cid\u003e --with \u003cnew\u003e - marks id as superseded by new\n- Auto-closes the superseded issue\n\nQuery support:\n- bd show \u003cid\u003e shows 'Superseded by: \u003cnew\u003e'\n- bd show \u003cnew\u003e shows 'Supersedes: \u003cid\u003e'\n- bd list --superseded shows version chains\n\nStorage:\n- superseded_by column pointing to replacement issue\n\nUseful for design docs, specs, and evolving artifacts.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:41.749294-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-io8c","title":"Improve test coverage for internal/syncbranch (33.0% ā†’ 70%)","description":"The syncbranch package has only 33.0% test coverage. This package handles git sync operations and is critical for data integrity.\n\nCurrent coverage: 33.0%\nTarget coverage: 70%","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-13T20:43:02.079145-08:00","updated_at":"2025-12-13T21:01:14.972533-08:00"} +{"id":"bd-aydr.8","title":"Respond to GitHub issue #479 with solution","description":"Once bd reset is implemented and released, respond to GitHub issue #479.\n\n## Response should include\n- Announce the new bd reset command\n- Show basic usage examples\n- Link to any documentation\n- Thank the user for the feedback\n\n## Example response\n```\nThanks for raising this! We've added a `bd reset` command to handle this case.\n\nUsage:\n- `bd reset` - Reset to clean state (prompts for confirmation)\n- `bd reset --backup` - Create backup first\n- `bd reset --hard` - Also clean up git history\n\nThis is available in version X.Y.Z.\n```\n\n## Notes\n- Wait until feature is merged and released\n- Consider if issue should be closed or left for user confirmation","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-13T08:45:00.112351+11:00","updated_at":"2025-12-13T06:24:29.562177-08:00","closed_at":"2025-12-13T10:18:06.646796+11:00","dependencies":[{"issue_id":"bd-aydr.8","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:45:00.112732+11:00","created_by":"daemon"},{"issue_id":"bd-aydr.8","depends_on_id":"bd-aydr.7","type":"blocks","created_at":"2025-12-13T08:45:12.640243+11:00","created_by":"daemon"}]} +{"id":"bd-qqc.9","title":"Update Homebrew formula","description":"Update the Homebrew tap with new version:\n\n```bash\n./scripts/update-homebrew.sh {{version}}\n```\n\nThis script waits for GitHub Actions to complete (~5 min), then updates the formula with new SHA256 hashes.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:35.815096-08:00","updated_at":"2025-12-18T22:51:07.863862-08:00","closed_at":"2025-12-18T22:51:07.863862-08:00","dependencies":[{"issue_id":"bd-qqc.9","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:35.816752-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.9","depends_on_id":"bd-qqc.8","type":"blocks","created_at":"2025-12-18T22:43:21.332955-08:00","created_by":"daemon"}]} +{"id":"bd-a15d","title":"Add test files for internal/storage","description":"The internal/storage package has no test files at all. This package provides the storage interface abstraction.\n\nCurrent coverage: N/A (no test files)\nTarget: Add basic interface tests","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:11.363017-08:00","updated_at":"2025-12-13T21:01:20.925779-08:00"} +{"id":"bd-pbh.9","title":"Update hook templates to 0.30.4","description":"Update bd-hooks-version comment in all 4 hook templates:\n- cmd/bd/templates/hooks/pre-commit\n- cmd/bd/templates/hooks/post-merge\n- cmd/bd/templates/hooks/pre-push\n- cmd/bd/templates/hooks/post-checkout\n\nEach should have:\n```bash\n# bd-hooks-version: 0.30.4\n```\n\n\n```verify\ngrep -l 'bd-hooks-version: 0.30.4' cmd/bd/templates/hooks/* | wc -l | grep -q '4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.0248-08:00","updated_at":"2025-12-17T21:46:46.27561-08:00","closed_at":"2025-12-17T21:46:46.27561-08:00","dependencies":[{"issue_id":"bd-pbh.9","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.025124-08:00","created_by":"daemon"}]} +{"id":"bd-w193","title":"Work on beads-399: Add omitempty to JSONL fields for smal...","description":"Work on beads-399: Add omitempty to JSONL fields for smaller notifications. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:37.440894-08:00","updated_at":"2025-12-20T00:26:12.607705-08:00","closed_at":"2025-12-19T23:23:09.542288-08:00"} +{"id":"bd-rp4o","title":"Deleted issues resurrect during bd sync (tombstones not propagating)","description":"## Problem\n\nWhen issues are deleted with bd delete --force, they get deleted from the local DB but resurrect during the next bd sync.\n\n## Reproduction\n\n1. Observe orphan warnings (bd-cb64c226.*, bd-cbed9619.*)\n2. Delete them: bd delete bd-cb64c226.1 ... --force\n3. Run bd sync\n4. Orphan warnings reappear - issues were resurrected!\n\n## Root Cause Hypothesis\n\nThe sync branch workflow (beads-sync) has the old state before deletions. When bd sync pulls from beads-sync and copies JSONL to main, the deleted issues are re-imported.\n\nTombstones may not be properly:\n1. Written to beads-sync during export\n2. Propagated during pull/merge\n3. Honored during import\n\n## Related\n\n- bd-7b7h: chicken-and-egg sync.branch bug (same workflow)\n- bd-ncwo: ID-based fallback matching to prevent ghost resurrection\n\n## Files to Investigate\n\n- cmd/bd/sync.go (export/import flow)\n- internal/syncbranch/worktree.go (PullFromSyncBranch, copyJSONLToMainRepo)\n- internal/importer/ (tombstone handling)","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T23:09:43.072696-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-cbed9619.5","title":"Add content-addressable identity to Issue type","description":"**Summary:** Added content-addressable identity to Issue type by implementing a ContentHash field that generates a unique SHA256 fingerprint based on semantic issue content. This resolves issue identification challenges when multiple system instances create issues with identical IDs but different contents.\n\n**Key Decisions:**\n- Use SHA256 for content hashing\n- Hash excludes ID and timestamps\n- Compute hash automatically at creation/import time\n- Add database column for hash storage\n\n**Resolution:** Successfully implemented a deterministic content hashing mechanism that enables reliable issue identification across distributed systems, improving data integrity and collision detection.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:36:44.914967-07:00","updated_at":"2025-12-17T23:18:29.112933-08:00","deleted_at":"2025-12-17T23:18:29.112933-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-qqc.2","title":"Add {{version}} to versionChanges in info.go","description":"Add new entry at the TOP of versionChanges array in cmd/bd/info.go:\n\n```go\n{\n Version: \"{{version}}\",\n Date: \"{{date}}\",\n Changes: []string{\n // Add notable changes here\n },\n},\n```\n\nCopy changes from CHANGELOG.md [Unreleased] section.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:27.032117-08:00","updated_at":"2025-12-18T23:34:18.631996-08:00","closed_at":"2025-12-18T22:41:41.836137-08:00","dependencies":[{"issue_id":"bd-qqc.2","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:27.032746-08:00","created_by":"stevey"}]} +{"id":"bd-au0","title":"Command Set Standardization \u0026 Flag Consistency","description":"Comprehensive improvements to bd command set based on 2025 audit findings.\n\n## Background\nSee docs/command-audit-2025.md for detailed analysis.\n\n## Goals\n1. Standardize flag naming and behavior across all commands\n2. Add missing flags for feature parity\n3. Fix naming confusion\n4. Improve consistency in JSON output\n\n## Success Criteria\n- All mutating commands support --dry-run (no --preview variants)\n- bd update supports label operations\n- bd search has filter parity with bd list\n- Priority flags accept both int and P0-P4 format everywhere\n- JSON output is consistent across all commands","status":"open","priority":2,"issue_type":"epic","created_at":"2025-11-21T21:05:55.672749-05:00","updated_at":"2025-11-21T21:05:55.672749-05:00"} +{"id":"bd-lxzx","title":"Add close_reason to JSONL export format documentation","description":"PR #551 now persists close_reason to the database, but there's a question about whether this field should be exported to JSONL format.\n\n## Current State\n- close_reason is stored in issues.close_reason column\n- close_reason is also stored in events table (audit trail)\n- The JSONL export format may or may not include close_reason\n\n## Questions\n1. Should close_reason be exported to JSONL format?\n2. If yes, where should it go (root level or nested in events)?\n3. Should there be any special handling to avoid duplication?\n4. How should close_reason be handled during JSONL import?\n\n## Why This Matters\n- JSONL is the git-friendly sync format\n- Other beads instances import from JSONL\n- close_reason is meaningful data that should be preserved across clones\n\n## Suggested Action\n- Check if close_reason is currently exported in JSONL\n- If not, add it to the export schema\n- Document the field in JSONL format spec\n- Add tests for round-trip (export -\u003e import -\u003e verify close_reason)","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:17.414916-08:00","updated_at":"2025-12-14T14:25:17.414916-08:00","dependencies":[{"issue_id":"bd-lxzx","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:17.416131-08:00","created_by":"stevey"}]} +{"id":"bd-dsp","title":"Test stdin body-file","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T17:27:32.098806-08:00","updated_at":"2025-12-17T17:28:33.832749-08:00","closed_at":"2025-12-17T17:28:33.832749-08:00"} +{"id":"bd-au0.8","title":"Improve clean vs cleanup command naming/documentation","description":"Clarify the difference between bd clean and bd cleanup to reduce user confusion.\n\n**Current state:**\n- bd clean: Remove temporary artifacts (.beads/bd.sock, logs, etc.)\n- bd cleanup: Delete old closed issues from database\n\n**Options:**\n1. Rename for clarity:\n - bd clean ā†’ bd clean-temp\n - bd cleanup ā†’ bd cleanup-issues\n \n2. Keep names but improve help text and documentation\n\n3. Add prominent warnings in help output\n\n**Preferred approach:** Option 2 (improve documentation)\n- Update short/long descriptions in commands\n- Add examples to help text\n- Update README.md\n- Add cross-references in help output\n\n**Files to modify:**\n- cmd/bd/clean.go\n- cmd/bd/cleanup.go\n- README.md or ADVANCED.md","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-21T21:07:49.960534-05:00","updated_at":"2025-11-21T21:07:49.960534-05:00","dependencies":[{"issue_id":"bd-au0.8","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:49.962743-05:00","created_by":"daemon"}]} +{"id":"bd-hlsw.4","title":"Sync branch integrity guards","description":"Track sync branch parent commit. If sync branch was force-pushed, warn user and require confirmation before proceeding. Add option to reset to remote if user accepts rebase. Prevents silent corruption from forced pushes.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-14T10:40:20.645402352-07:00","updated_at":"2025-12-14T10:40:20.645402352-07:00","dependencies":[{"issue_id":"bd-hlsw.4","depends_on_id":"bd-hlsw","type":"parent-child","created_at":"2025-12-14T10:40:20.646425761-07:00","created_by":"daemon"}]} +{"id":"bd-bgr","title":"Test stdin 2","description":"Description from stdin test\n","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T17:28:05.41434-08:00","updated_at":"2025-12-17T17:28:33.833288-08:00","closed_at":"2025-12-17T17:28:33.833288-08:00"} +{"id":"bd-f3ll","title":"Merge: bd-ot0w","description":"branch: polecat/dementus\ntarget: main\nsource_issue: bd-ot0w\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:20:33.495772-08:00","updated_at":"2025-12-19T23:20:33.495772-08:00"} +{"id":"bd-d3e5","title":"Test issue 2","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-14T11:21:13.878680387-07:00","updated_at":"2025-12-14T11:21:13.878680387-07:00","closed_at":"2025-12-14T00:32:13.890274-08:00"} +{"id":"bd-z8a6","title":"bd delete --from-file should add deleted issues to deletions manifest","description":"When using bd delete --from-file to bulk delete issues, the deleted issue IDs are not being added to the deletions.jsonl manifest.\n\nThis causes those issues to be resurrected during bd sync when git history scanning finds them in old commits.\n\nExpected: All deleted issues should be added to deletions.jsonl so they wont be reimported from git history.\n\nWorkaround: Manually add deletion records to deletions.jsonl.","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T01:48:14.099855-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-whgv","title":"Merge: bd-401h","description":"branch: polecat/rictus\ntarget: main\nsource_issue: bd-401h\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:20:37.854953-08:00","updated_at":"2025-12-19T23:20:37.854953-08:00"} +{"id":"bd-n777","title":"Timer beads for scheduled agent callbacks","description":"## Problem\n\nAgents frequently need to wait for external events (CI completion, PR reviews, artifact builds) but have no good mechanism:\n- `sleep N` blocks and is unreliable (often times out at 8+ minutes)\n- Polling wastes context and is easy to forget\n- No way to survive session restarts\n\n## Proposal: Timer Beads\n\nA new bead type or field that represents a scheduled callback:\n\n### Creating timers\n```bash\nbd timer create --in 30s --callback \"Check CI run 12345\" --issue bd-xyz\nbd timer create --at \"2025-12-20T08:00:00\" --callback \"Morning standup\"\nbd timer create --in 5m --on-expire \"tmux send-keys -t dave 'bd show bd-xyz'\"\n```\n\n### Timer storage\n- Store in beads (survives restarts)\n- Fields: `expires_at`, `callback_description`, `on_expire_command`, `linked_issue`\n- Status: pending, fired, cancelled\n\n### Deacon integration\nThe Deacon daemon monitors timer beads:\n1. Wakes on next timer expiry\n2. Executes `on_expire` command (e.g., tmux send-keys to interrupt agent)\n3. Marks timer as fired\n4. Optionally updates linked issue\n\n### Use cases\n- CI monitoring: \"ping me when build completes\"\n- PR reviews: \"check back in 1 hour\"\n- Scheduled tasks: \"remind me at EOD to sync\"\n- Blocking waits: agent registers callback instead of sleeping\n\n## Acceptance criteria\n- [ ] Timer bead type or field design\n- [ ] `bd timer create/list/cancel` commands\n- [ ] Deacon timer monitoring loop\n- [ ] tmux integration for agent interrupts\n- [ ] Survives daemon restarts","status":"open","priority":2,"issue_type":"feature","created_at":"2025-12-19T23:05:33.051861-08:00","updated_at":"2025-12-19T23:05:33.051861-08:00"} +{"id":"bd-n386","title":"Improve test coverage for internal/daemon (27.3% ā†’ 60%)","description":"The daemon package has only 27.3% test coverage. The daemon is critical for background operations and reliability.\n\nKey areas needing tests:\n- Daemon autostart logic\n- Socket handling\n- PID file management\n- Health checks\n\nCurrent coverage: 27.3%\nTarget coverage: 60%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:00.895238-08:00","updated_at":"2025-12-13T21:01:17.274438-08:00"} +{"id":"bd-sumr","title":"Merge: bd-t4sb","description":"branch: polecat/capable\ntarget: main\nsource_issue: bd-t4sb\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:22:21.343724-08:00","updated_at":"2025-12-19T23:22:21.343724-08:00"} +{"id":"bd-pbh.20","title":"Update git hooks","description":"Install the updated hooks:\n```bash\nbd hooks install\n```\n\nVerify hook version:\n```bash\ngrep 'bd-hooks-version' .git/hooks/pre-commit\n```\n\n\n```verify\ngrep -q 'bd-hooks-version: 0.30.4' .git/hooks/pre-commit 2\u003e/dev/null || echo 'Hooks may not be installed - verify manually'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.13198-08:00","updated_at":"2025-12-17T21:46:46.381519-08:00","closed_at":"2025-12-17T21:46:46.381519-08:00","dependencies":[{"issue_id":"bd-pbh.20","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.132306-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.20","depends_on_id":"bd-pbh.17","type":"blocks","created_at":"2025-12-17T21:19:11.352288-08:00","created_by":"daemon"}]} +{"id":"bd-379","title":"Implement `bd setup cursor` for Cursor IDE integration","description":"Create a `bd setup cursor` command that integrates Beads workflow into Cursor IDE via .cursorrules file. Unlike Claude Code (which has hooks), Cursor uses a static rules file to provide context to its AI.","status":"open","priority":3,"issue_type":"feature","created_at":"2025-11-11T23:32:22.170083-08:00","updated_at":"2025-11-11T23:32:22.170083-08:00"} +{"id":"bd-dp4w","title":"Test message","description":"This is a test message body","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:11:58.467876-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} +{"id":"bd-m8ro","title":"Improve test coverage for internal/rpc (47.5% ā†’ 60%)","description":"The RPC package has only 47.5% test coverage. RPC is the communication layer for daemon operations.\n\nCurrent coverage: 47.5%\nTarget coverage: 60%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:09.515299-08:00","updated_at":"2025-12-13T21:01:17.17404-08:00"} +{"id":"bd-4y4g","title":"Bump version in all files","description":"Run ./scripts/bump-version.sh {{version}} to update 10 version files. Then run with --commit after info.go is updated.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:01.859728-08:00","updated_at":"2025-12-18T22:46:24.537336-08:00","closed_at":"2025-12-18T22:46:24.537336-08:00","dependencies":[{"issue_id":"bd-4y4g","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.623724-08:00","created_by":"daemon"},{"issue_id":"bd-4y4g","depends_on_id":"bd-8v2","type":"blocks","created_at":"2025-12-18T22:43:20.823329-08:00","created_by":"daemon"}]} +{"id":"bd-qqc.6","title":"Create git tag v{{version}}","description":"Create the release tag:\n\n```bash\ngit tag v{{version}}\n```\n\nVerify: `git tag | grep {{version}}`","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T13:00:15.495086-08:00","updated_at":"2025-12-18T23:34:18.632308-08:00","closed_at":"2025-12-18T22:41:41.874099-08:00","dependencies":[{"issue_id":"bd-qqc.6","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T13:00:15.496036-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.6","depends_on_id":"bd-qqc.5","type":"blocks","created_at":"2025-12-18T13:01:07.478315-08:00","created_by":"stevey"}]} +{"id":"bd-7h5","title":"Add pinned field to issue schema","description":"Add boolean 'pinned' field to the issue schema. When true, the issue is marked as a persistent context marker that should not be treated as a work item.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:26.767247-08:00","updated_at":"2025-12-19T00:08:59.854605-08:00","closed_at":"2025-12-19T00:08:59.854605-08:00","dependencies":[{"issue_id":"bd-7h5","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:55.98635-08:00","created_by":"daemon"}]} +{"id":"bd-cb64c226.12","title":"Remove Storage Cache from Server Struct","description":"Eliminate cache fields and use s.storage directly","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:25.474412-07:00","updated_at":"2025-12-17T23:18:29.111039-08:00","deleted_at":"2025-12-17T23:18:29.111039-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-pbh.14","title":"Monitor PyPI publish","description":"Watch the PyPI publish action:\nhttps://github.com/steveyegge/beads/actions/workflows/pypi-publish.yml\n\nVerify at: https://pypi.org/project/beads-mcp/0.30.4/\n\nCheck:\n```bash\npip index versions beads-mcp 2\u003e/dev/null | grep -q '0.30.4'\n```\n\n\n```verify\npip index versions beads-mcp 2\u003e/dev/null | grep -q '0.30.4' || curl -s https://pypi.org/pypi/beads-mcp/json | jq -e '.releases[\"0.30.4\"]'\n```","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.083809-08:00","updated_at":"2025-12-17T21:46:46.320922-08:00","closed_at":"2025-12-17T21:46:46.320922-08:00","dependencies":[{"issue_id":"bd-pbh.14","depends_on_id":"bd-pbh.12","type":"blocks","created_at":"2025-12-17T21:19:11.289698-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.14","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.084126-08:00","created_by":"daemon"}]} +{"id":"bd-7tuu","title":"Commit and push release","description":"git add -A \u0026\u0026 git commit \u0026\u0026 git push to trigger CI","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:02.053382-08:00","updated_at":"2025-12-20T01:23:52.484043-08:00","closed_at":"2025-12-20T01:23:52.484043-08:00","dependencies":[{"issue_id":"bd-7tuu","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.021087-08:00","created_by":"daemon"},{"issue_id":"bd-7tuu","depends_on_id":"bd-hw3w","type":"blocks","created_at":"2025-12-19T22:56:23.291591-08:00","created_by":"daemon"}]} +{"id":"bd-06px","title":"bd sync --from-main fails: unknown flag --no-git-history","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-17T14:32:02.998106-08:00","updated_at":"2025-12-17T23:13:40.531756-08:00","closed_at":"2025-12-17T17:21:48.506039-08:00"} +{"id":"bd-0w5","title":"Fix update-hooks verification in version-bump.yaml","description":"The update-hooks task verification command at version-bump.yaml:358 always succeeds due to '|| echo ...' fallback. Remove the fallback so verification actually fails when hooks aren't installed.","status":"closed","priority":3,"issue_type":"bug","created_at":"2025-12-17T22:23:06.55467-08:00","updated_at":"2025-12-17T22:34:07.290409-08:00","closed_at":"2025-12-17T22:34:07.290409-08:00"} +{"id":"bd-4sfl","title":"Merge: bd-14ie","description":"branch: polecat/toast\ntarget: main\nsource_issue: bd-14ie\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:23:37.360782-08:00","updated_at":"2025-12-19T23:23:37.360782-08:00"} +{"id":"bd-1slh","title":"Investigate charmbracelet-based TUI for beads","description":"Now that we've merged the create-form command (PR #603) which uses charmbracelet/huh, investigate whether beads should have a more comprehensive TUI.\n\nConsiderations:\n- Should this be in core or a separate binary (bd-tui)?\n- What functionality would benefit from a TUI? (list view, issue details, search, bulk operations)\n- Plugin/extension architecture vs build tags vs separate binary\n- Dependency cost vs user experience tradeoff\n- Target audience: humans who want interactive workflows vs CLI/scripting users\n\nRelated: PR #603 added charmbracelet/huh dependency for create-form command.","status":"open","priority":3,"issue_type":"feature","created_at":"2025-12-17T14:20:51.503563-08:00","updated_at":"2025-12-17T14:20:51.503563-08:00"} +{"id":"bd-4uoc","title":"Code Review Followup Summary: PR #481 + PR #551","description":"## Merged PRs Summary\n\n### PR #551: Persist close_reason to issues table\n- āœ… Merged successfully\n- āœ… Bug fix: close_reason now persisted in database column (not just events table)\n- āœ… Comprehensive test coverage added\n- āœ… Handles reopen case (clearing close_reason)\n\n**Followup Issues Filed:**\n- bd-lxzx: Document close_reason in JSONL export format\n- bd-077e: Update CLI documentation for close_reason field\n\n---\n\n### PR #481: Context Engineering Optimizations (80-90% context reduction)\n- āœ… Merged successfully \n- āœ… Lazy tool discovery: discover_tools() + get_tool_info()\n- āœ… Minimal issue models: IssueMinimal (~80% smaller than full Issue)\n- āœ… Result compaction: Auto-compacts results \u003e20 items\n- āœ… All 28 tests passing\n- āš ļø Breaking change: ready() and list() return type changed\n\n**Followup Issues Filed:**\n- bd-b318: Add integration tests for CompactedResult\n- bd-4u2b: Make compaction settings configurable (THRESHOLD, PREVIEW_COUNT)\n- bd-2kf8: Document CompactedResult response format in CONTEXT_ENGINEERING.md\n- bd-pdr2: Document backwards compatibility considerations\n\n---\n\n## Overall Assessment\n\nBoth PRs are production-ready with solid implementations. All critical functionality works and tests pass. Followup issues focus on:\n1. Documentation improvements (5 issues)\n2. Integration test coverage (1 issue)\n3. Configuration flexibility (1 issue)\n4. Backwards compatibility guidance (1 issue)\n\nNo critical bugs or design issues found.\n\n## Review Completed By\nCode review process completed. Issues auto-created for tracking improvements.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:59.214886-08:00","updated_at":"2025-12-14T14:25:59.214886-08:00","dependencies":[{"issue_id":"bd-4uoc","depends_on_id":"bd-otf4","type":"discovered-from","created_at":"2025-12-14T14:25:59.216884-08:00","created_by":"stevey"},{"issue_id":"bd-4uoc","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:59.217296-08:00","created_by":"stevey"}]} +{"id":"bd-j6lr","title":"GH#402: Add --parent flag documentation to bd onboard","description":"bd onboard output is missing --parent flag for epic subtasks. Agents guess wrong syntax (--deps parent:). See GitHub issue #402.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:56.594829-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-cb64c226.8","title":"Update Metrics and Health Endpoints","description":"Remove cache-related metrics from health/metrics endpoints","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:49.212047-07:00","updated_at":"2025-12-17T23:18:29.110022-08:00","deleted_at":"2025-12-17T23:18:29.110022-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-3852","title":"Add orphan detection migration","description":"Create migration to detect orphaned children in existing databases. Query: SELECT id FROM issues WHERE id LIKE '%.%' AND substr(id, 1, instr(id || '.', '.') - 1) NOT IN (SELECT id FROM issues). Log results, let user decide action (delete orphans or convert to top-level).","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-04T12:32:30.727044-08:00","updated_at":"2025-11-04T12:32:30.727044-08:00"} +{"id":"bd-6gd","title":"Remove legacy MCP Agent Mail integration","description":"## Summary\n\nRemove the legacy MCP Agent Mail system that requires an external HTTP server. Keep the native `bd mail` system which stores messages as git-synced issues.\n\n## Background\n\nTwo mail systems exist in the codebase:\n1. **Legacy Agent Mail** (`bd message`) - External server dependency, complex setup\n2. **Native bd mail** (`bd mail`) - Built-in, git-synced, no dependencies\n\nThe legacy system causes confusion and is no longer needed. Gas Town's Town Mail will use the native `bd mail` system.\n\n## Files to Delete\n\n### CLI Command\n- [ ] `cmd/bd/message.go` - The `bd message` command implementation\n\n### MCP Integration\n- [ ] `integrations/beads-mcp/src/beads_mcp/mail.py` - HTTP wrapper for Agent Mail server\n- [ ] `integrations/beads-mcp/src/beads_mcp/mail_tools.py` - MCP tool definitions\n- [ ] `integrations/beads-mcp/tests/test_mail.py` - Tests for legacy mail\n\n### Documentation\n- [ ] `docs/AGENT_MAIL.md`\n- [ ] `docs/AGENT_MAIL_QUICKSTART.md`\n- [ ] `docs/AGENT_MAIL_DEPLOYMENT.md`\n- [ ] `docs/AGENT_MAIL_MULTI_WORKSPACE_SETUP.md`\n- [ ] `docs/adr/002-agent-mail-integration.md`\n\n## Code to Update\n\n- [ ] Remove `message` command registration from `cmd/bd/main.go`\n- [ ] Remove mail tool imports/registration from MCP server `__init__.py` or `server.py`\n- [ ] Check for any other references to Agent Mail in the codebase\n\n## Verification\n\n- [ ] `bd message` command no longer exists\n- [ ] `bd mail` command still works\n- [ ] MCP server starts without errors\n- [ ] Tests pass\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T23:04:04.099935-08:00","updated_at":"2025-12-17T23:13:24.128752-08:00","closed_at":"2025-12-17T23:13:24.128752-08:00"} +{"id":"bd-qqc.12","title":"Restart daemon with {{version}}","description":"Restart the bd daemon to pick up new version:\n\n```bash\nbd daemon --stop\nbd daemon --start\nbd daemon --health # Verify Version: {{version}}\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:08:04.155448-08:00","updated_at":"2025-12-18T23:09:05.777375-08:00","closed_at":"2025-12-18T23:09:05.777375-08:00","dependencies":[{"issue_id":"bd-qqc.12","depends_on_id":"bd-qqc.11","type":"blocks","created_at":"2025-12-18T23:08:19.779897-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.12","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T23:08:04.155832-08:00","created_by":"daemon"}]} +{"id":"bd-xj2e","title":"GH#522: Add --type flag to bd update command","description":"Add --type flag to bd update for changing issue type (task/epic/bug/feature). Storage layer already supports it. See GitHub issue #522.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:12.506583-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-cb64c226.1","title":"Performance Validation","description":"Confirm no performance regression from cache removal","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T10:50:15.126019-07:00","updated_at":"2025-12-17T23:18:29.108883-08:00","deleted_at":"2025-12-17T23:18:29.108883-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-kwro.10","title":"Tests for messaging and graph links","description":"Comprehensive test coverage for all new features.\n\nTest files:\n- cmd/bd/mail_test.go - mail command tests\n- internal/storage/sqlite/graph_links_test.go - graph link tests\n- internal/hooks/hooks_test.go - hook execution tests\n\nTest cases:\n- Mail send/inbox/read/ack lifecycle\n- Thread creation and traversal (replies_to)\n- Bidirectional relates_to\n- Duplicate marking and queries\n- Supersedes chains\n- Ephemeral cleanup\n- Identity resolution priority\n- Hook execution (mock hooks)\n- Schema migration preserves data\n\nTarget: \u003e80% coverage on new code","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T03:02:34.050136-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-kwro.8","title":"Hooks System","description":"Implement hook system for extensibility.\n\nHook directory: .beads/hooks/\nHook files (executable scripts):\n- on_create - runs after bd create\n- on_update - runs after bd update \n- on_close - runs after bd close\n- on_message - runs after bd mail send\n\nHook invocation:\n- Pass issue ID as first argument\n- Pass event type as second argument\n- Pass JSON issue data on stdin\n- Run asynchronously (dont block command)\n\nExample hook (GGT notification):\n #!/bin/bash\n gt notify --event=$2 --issue=$1\n\nThis allows GGT to register notification handlers without Beads knowing about GGT.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:02:23.086393-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pbh.8","title":"Update npm-package/package.json to 0.30.4","description":"Update version field in npm-package/package.json:\n```json\n\"version\": \"0.30.4\"\n```\n\n\n```verify\njq -e '.version == \"0.30.4\"' npm-package/package.json\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.014905-08:00","updated_at":"2025-12-17T21:46:46.268821-08:00","closed_at":"2025-12-17T21:46:46.268821-08:00","dependencies":[{"issue_id":"bd-pbh.8","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.01529-08:00","created_by":"daemon"}]} +{"id":"bd-r6a","title":"Redesign workflow system: templates as native Beads","description":"## Problem\n\nThe current workflow system (YAML templates in cmd/bd/templates/workflows/) is architecturally flawed:\n\n1. **Out-of-band data plane** - YAML files are a parallel system outside Beads itself\n2. **Heavyweight DSL** - YAML is gross; even TOML would have been better, but neither is ideal\n3. **Not graph-native** - Beads IS already a dependency graph with priorities, so why reinvent it?\n4. **Can't use bd commands on templates** - They're opaque YAML, not viewable/editable Beads\n\n## The Right Design\n\n**Templates should be Beads themselves.**\n\nA \"workflow template\" should be:\n- An epic marked as a template (via label, type, or prefix like `tpl-`)\n- Child issues with dependencies between them (using normal bd dep)\n- Titles and descriptions containing `{{variable}}` placeholders\n- Normal priorities that control serialization order\n\n\"Instantiation\" becomes:\n1. Clone the template subgraph (epic + children + dependencies)\n2. Substitute variables in titles/descriptions\n3. Generate new IDs for all cloned issues\n4. Return the new epic ID\n\n## Benefits\n\n- **No YAML** - Templates are just Beads\n- **Use existing tools** - `bd show`, `bd edit`, `bd dep` work on templates\n- **Graph-native** - Dependencies are real Beads dependencies\n- **Simpler codebase** - Remove all the YAML parsing/workflow code\n- **Composable** - Templates can reference other templates\n\n## Tasks\n\n1. Delete the YAML workflow system code (revert recent push + remove existing workflow code)\n2. Design template marking convention (label? type? id prefix?)\n3. Implement `bd template create` or `bd clone --as-template`\n4. Implement `bd template instantiate \u003ctemplate-id\u003e --var key=value`\n5. Migrate version-bump workflow to native Beads template\n6. Update documentation","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-17T22:41:57.359643-08:00","updated_at":"2025-12-18T17:42:26.000769-08:00","closed_at":"2025-12-18T13:47:04.632525-08:00"} +{"id":"bd-s2t","title":"wish: a 'continue' or similar cmd/flag which means alter last issue","description":"so many time I create an issue and then have another thought: 'oh, before I did X and it crashed there was ZZZ happening' or 'actually that is P4 not P2'. It would be nice if when `bd {cmd}` is used without a {title} or {id} it just adds or updates the most recently touched issue.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-08T06:46:37.529160416-07:00","updated_at":"2025-12-08T06:46:37.529160416-07:00"} +{"id":"bd-pbh","title":"Release v0.30.4","description":"## Version Bump Workflow\n\nCoordinating release from 0.30.3 to 0.30.4.\n\n### Components Updated\n- Go CLI (cmd/bd/version.go)\n- Claude Plugin (.claude-plugin/*.json)\n- MCP Server (integrations/beads-mcp/)\n- npm Package (npm-package/package.json)\n- Git hooks (cmd/bd/templates/hooks/)\n\n### Release Channels\n- GitHub Releases (GoReleaser)\n- PyPI (beads-mcp)\n- npm (@beads/cli)\n- Homebrew (homebrew-beads tap)\n","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-17T21:19:10.926133-08:00","updated_at":"2025-12-17T21:46:46.192948-08:00","closed_at":"2025-12-17T21:46:46.192948-08:00"} +{"id":"bd-n3v","title":"Error committing to sync branch: failed to create worktree","description":"\u003e bd sync --no-daemon\nā†’ Exporting pending changes to JSONL...\nā†’ Committing changes to sync branch 'beads-sync'...\nError committing to sync branch: failed to create worktree: failed to create worktree parent directory: mkdir /var/home/matt/dev/beads/fix-ci/.git: not a directory","notes":"**Problem Diagnosed**: The `bd sync` command was failing with \"mkdir /var/home/matt/dev/beads/fix-ci/.git: not a directory\" because it was being executed from the wrong directory.\n\n**Root Cause**: The command was run from `/var/home/matt/dev/beads` (where the `fix-ci` worktree exists) instead of the main repository directory `/var/home/matt/dev/beads/main`. Since `fix-ci` is a git worktree with a `.git` file (not directory), the worktree creation logic failed when trying to create `\u003ccurrent_dir\u003e/.git/beads-worktrees/\u003cbranch\u003e`.\n\n**Solution Verified**: Execute `bd sync` from the main repository directory:\n```bash\ncd main \u0026\u0026 bd sync --dry-run\n```\n","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-05T15:25:24.514998248-07:00","updated_at":"2025-12-05T15:42:32.910166956-07:00"} +{"id":"bd-by0d","title":"Work on beads-ldv: Fix bd graph crashes with nil pointer ...","description":"Work on beads-ldv: Fix bd graph crashes with nil pointer dereference (GH#657). Fix nil pointer in computeDependencyCounts at graph.go:428. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:27.829359-08:00","updated_at":"2025-12-20T00:26:12.607018-08:00","closed_at":"2025-12-19T23:20:49.038441-08:00"} +{"id":"bd-ot0w","title":"Work on beads-tip: Fix broken Claude integration link in ...","description":"Work on beads-tip: Fix broken Claude integration link in bd doctor (GH#623). Update URL that doesn't exist. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:08.429157-08:00","updated_at":"2025-12-19T23:20:39.790305-08:00","closed_at":"2025-12-19T23:20:39.790305-08:00"} +{"id":"bd-cb64c226.10","title":"Delete server_cache_storage.go","description":"Remove the entire cache implementation file (~286 lines)","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:38.729299-07:00","updated_at":"2025-12-17T23:18:29.110716-08:00","deleted_at":"2025-12-17T23:18:29.110716-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-gjla","title":"Test Thread","description":"Initial message for threading test","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:19:51.704324-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-gjla","depends_on_id":"bd-f5cc","type":"duplicates","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} +{"id":"bd-8g8","title":"Fix G304 potential file inclusion in cmd/bd/tips.go:259","description":"Linting issue: G304: Potential file inclusion via variable (gosec) at cmd/bd/tips.go:259:18. Error: if data, err := os.ReadFile(settingsPath); err == nil {","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:34:57.189730843-07:00","updated_at":"2025-12-17T23:13:40.534569-08:00","closed_at":"2025-12-17T16:46:11.029837-08:00"} +{"id":"bd-au0.9","title":"Review and document rarely-used commands","description":"Document use cases or consider deprecation for infrequently-used commands.\n\n**Commands to review:**\n1. bd rename-prefix - How often is this used? Document use cases\n2. bd detect-pollution - Consider integrating into bd validate\n3. bd migrate-hash-ids - One-time migration, keep but document as legacy\n\n**For each command:**\n- Document typical use cases\n- Add examples to help text\n- Consider if it should be a subcommand instead\n- Add deprecation warning if appropriate\n\n**Not changing:**\n- duplicates āœ“ (useful for data quality)\n- repair-deps āœ“ (useful for fixing broken refs)\n- restore āœ“ (critical for compacted issues)\n- compact āœ“ (performance feature)\n\n**Deliverable:**\n- Updated help text\n- Documentation in ADVANCED.md\n- Deprecation plan if needed","status":"open","priority":3,"issue_type":"task","created_at":"2025-11-21T21:08:05.588275-05:00","updated_at":"2025-11-21T21:08:05.588275-05:00","dependencies":[{"issue_id":"bd-au0.9","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:08:05.59003-05:00","created_by":"daemon"}]} +{"id":"bd-s0qf","title":"GH#405: Fix prefix parsing with hyphens - multi-hyphen prefixes parsed incorrectly","description":"Fixed: ExtractIssuePrefix was falling back to first-hyphen for word-like suffixes, breaking multi-hyphen prefixes like 'hacker-news' and 'me-py-toolkit'.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:13:56.951359-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-qqc.13","title":"Upgrade beads-mcp to {{version}}","description":"Upgrade the MCP server via pip:\n\n```bash\npip install --upgrade beads-mcp\npip show beads-mcp | grep Version # Verify {{version}}\n```\n\nNote: Restart Claude Code or MCP session to use new version.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:08:04.318233-08:00","updated_at":"2025-12-18T23:09:05.77824-08:00","closed_at":"2025-12-18T23:09:05.77824-08:00","dependencies":[{"issue_id":"bd-qqc.13","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T23:08:04.318709-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.13","depends_on_id":"bd-qqc.11","type":"blocks","created_at":"2025-12-18T23:08:19.927825-08:00","created_by":"daemon"}]} +{"id":"bd-aydr.7","title":"Add integration tests for bd reset command","description":"End-to-end integration tests for the reset command.\n\n## Test Scenarios\n\n### Basic reset\n1. Init beads, create some issues\n2. Run bd reset --force\n3. Verify .beads/ is fresh, issues gone\n\n### Hard reset\n1. Init beads, create issues, commit\n2. Run bd reset --hard --force \n3. Verify git history has reset commits\n\n### Backup functionality\n1. Init beads, create issues\n2. Run bd reset --backup --force\n3. Verify backup exists with correct contents\n4. Verify main .beads/ is reset\n\n### Dry run\n1. Init beads, create issues\n2. Run bd reset --dry-run\n3. Verify nothing changed\n\n### Confirmation prompt\n1. Init beads\n2. Run bd reset (no --force)\n3. Verify prompts for confirmation\n4. Test both y and n responses\n\n## Location\ntests/integration/reset_test.go or similar","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:58.479282+11:00","updated_at":"2025-12-13T06:24:29.561908-08:00","closed_at":"2025-12-13T10:15:59.221637+11:00","dependencies":[{"issue_id":"bd-aydr.7","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:58.479686+11:00","created_by":"daemon"},{"issue_id":"bd-aydr.7","depends_on_id":"bd-aydr.4","type":"blocks","created_at":"2025-12-13T08:45:11.15972+11:00","created_by":"daemon"}]} +{"id":"bd-bwk2","title":"Centralize error handling patterns in storage layer","description":"80+ instances of inconsistent error handling across sqlite.go with mix of %w, %v, and no wrapping.\n\nLocation: internal/storage/sqlite/sqlite.go (throughout)\n\nProblem:\n- Some use fmt.Errorf(\"op failed: %w\", err) - correct wrapping\n- Some use fmt.Errorf(\"op failed: %v\", err) - loses error chain\n- Some return err directly - no context\n- Hard to debug production issues\n- Can't distinguish error types\n\nSolution: Create internal/storage/sqlite/errors.go:\n- Define sentinel errors (ErrNotFound, ErrInvalidID, etc.)\n- Create wrapDBError(op string, err error) helper\n- Convert sql.ErrNoRows to ErrNotFound\n- Always wrap with operation context\n\nImpact: Lost error context; inconsistent messages; hard to debug\n\nEffort: 5-7 hours","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-16T14:51:54.974909-08:00","updated_at":"2025-11-16T14:51:54.974909-08:00"} +{"id":"bd-an4s","title":"Version Bump: 0.32.1","description":"Release checklist for version 0.32.1. Patch release with MCP output control params and pin field fix.","status":"open","priority":1,"issue_type":"epic","created_at":"2025-12-20T21:53:01.315592-08:00","updated_at":"2025-12-20T21:53:01.315592-08:00"} +{"id":"bd-pgcs","title":"Clean up orphaned child issues (bd-cb64c226.*, bd-cbed9619.*)","description":"## Problem\n\nEvery bd command shows warnings about 12 orphaned child issues:\n- bd-cb64c226.1, .6, .8, .9, .10, .12, .13\n- bd-cbed9619.1, .2, .3, .4, .5\n\nThese are hierarchical IDs (parent.child format) where the parent issues no longer exist.\n\n## Impact\n\n- Clutters output of every bd command\n- Confusing for users\n- Indicates incomplete cleanup of deleted parent issues\n\n## Proposed Solution\n\n1. Delete the orphaned issues since their parents no longer exist:\n ```bash\n bd delete bd-cb64c226.1 bd-cb64c226.6 bd-cb64c226.8 ...\n ```\n\n2. Or convert them to top-level issues if they contain useful content\n\n## Investigation Needed\n\n- What were the parent issues bd-cb64c226 and bd-cbed9619?\n- Why were they deleted without their children?\n- Should bd delete cascade to children automatically?","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T23:06:17.240571-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-tbz3","title":"bd init UX Improvements","description":"bd init leaves users with incomplete setup, requiring manual bd doctor --fix. Issues found: (1) git hooks not installed if user declines prompt, (2) no auto-migration when CLI is upgraded, (3) stale merge driver configs from old versions. Fix by making bd init more robust with better defaults and auto-migration.","status":"open","priority":1,"issue_type":"epic","created_at":"2025-11-21T23:16:00.333543-08:00","updated_at":"2025-11-21T23:16:37.811233-08:00"} +{"id":"bd-qqc.5","title":"Commit release v{{version}}","description":"Stage and commit the version bump:\n\n```bash\ngit add cmd/bd/version.go cmd/bd/info.go CHANGELOG.md\ngit commit -m \"release: v{{version}}\"\n```\n\nDo NOT push yet - tag first.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T13:00:04.097628-08:00","updated_at":"2025-12-18T23:34:18.630946-08:00","closed_at":"2025-12-18T22:41:41.864839-08:00","dependencies":[{"issue_id":"bd-qqc.5","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T13:00:04.098265-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.5","depends_on_id":"bd-qqc.4","type":"blocks","created_at":"2025-12-18T13:01:02.275008-08:00","created_by":"stevey"}]} +{"id":"bd-2ep8","title":"Update CHANGELOG.md with release notes","description":"Add meaningful release notes to CHANGELOG.md describing what changed in 0.30.7","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649053-08:00","updated_at":"2025-12-19T22:57:31.69559-08:00","closed_at":"2025-12-19T22:57:31.69559-08:00","dependencies":[{"issue_id":"bd-2ep8","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.650816-08:00","created_by":"stevey"},{"issue_id":"bd-2ep8","depends_on_id":"bd-rupw","type":"blocks","created_at":"2025-12-19T22:56:48.651136-08:00","created_by":"stevey"}]} +{"id":"bd-jgxi","title":"Auto-migrate database on CLI version bump","description":"When CLI is upgraded (e.g., 0.24.0 ā†’ 0.24.1), database version becomes stale. Add auto-migration in PersistentPreRun or daemon startup. Check dbVersion != CLIVersion and run bd migrate automatically. Fixes recurring UX issue where bd doctor shows version mismatch after every CLI upgrade.","status":"closed","issue_type":"feature","created_at":"2025-11-21T23:16:09.004619-08:00","updated_at":"2025-12-17T23:13:40.535453-08:00","closed_at":"2025-12-17T17:15:43.605762-08:00","dependencies":[{"issue_id":"bd-jgxi","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:09.005513-08:00","created_by":"daemon"}]} +{"id":"bd-x36g","title":"Thread Test 2","description":"Testing direct mode","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:16.470631-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} +{"id":"bd-90v","title":"bd prime: AI context loading and Claude Code integration","description":"Implement `bd prime` command and Claude Code hooks for context recovery. Hooks work with BOTH MCP server and CLI approaches - they solve the context memory problem (keeping bd workflow fresh after compaction) not the tool access problem (MCP vs CLI).","status":"open","priority":2,"issue_type":"epic","created_at":"2025-11-11T23:31:12.119012-08:00","updated_at":"2025-11-12T00:11:07.743189-08:00"} +{"id":"bd-7h7","title":"bd init should stop running daemon to avoid stale cache","description":"When running bd init, any running daemon continues with stale cached data, causing bd stats and other commands to show old counts.\n\nRepro:\n1. Have daemon running with 788 issues cached\n2. Clean JSONL to 128 issues, delete db, run bd init\n3. bd stats still shows 788 (daemon cache)\n4. Must manually run bd daemon --stop\n\nFix: bd init should automatically stop any running daemon before reinitializing.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T13:26:47.117226-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-kwro.3","title":"Graph Link: relates_to for knowledge graph","description":"Implement relates_to link type for loose associations.\n\nNew command:\n- bd relate \u003cid1\u003e \u003cid2\u003e - creates bidirectional relates_to link\n\nQuery support:\n- bd show \u003cid\u003e --related shows related issues\n- bd list --related-to \u003cid\u003e\n\nStorage:\n- relates_to stored as JSON array of issue IDs\n- Consider: separate junction table for efficiency at scale?\n\nThis enables 'see also' connections without blocking or hierarchy.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:30.793115-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-dhza","title":"Reduce global state in cmd/bd/main.go (25+ variables)","description":"Code health review found main.go has 25+ global variables (lines 57-112):\n\n- dbPath, actor, store, jsonOutput, daemonClient, noDaemon\n- rootCtx, rootCancel, autoFlushEnabled\n- isDirty (marked 'USED BY LEGACY CODE')\n- needsFullExport (marked 'USED BY LEGACY CODE')\n- flushTimer (marked 'DEPRECATED')\n- flushMutex, storeMutex, storeActive\n- flushFailureCount, lastFlushError, flushManager\n- skipFinalFlush, autoImportEnabled\n- versionUpgradeDetected, previousVersion, upgradeAcknowledged\n\nImpact:\n- Hard to test individual commands\n- Race conditions possible\n- State leakage between commands\n\nFix: Move toward dependency injection. Remove deprecated variables. Consider cmd/bd/internal package.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:29.643293-08:00","updated_at":"2025-12-16T18:17:29.643293-08:00","dependencies":[{"issue_id":"bd-dhza","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.492112-08:00","created_by":"daemon"}]} +{"id":"bd-8hy","title":"Kill running daemons","description":"Stop all bd daemons before release:\n\n```bash\npkill -f 'bd.*daemon' || true\nsleep 1\npgrep -lf 'bd.*daemon' # Should show nothing\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:58.255478-08:00","updated_at":"2025-12-18T22:43:55.394966-08:00","closed_at":"2025-12-18T22:43:55.394966-08:00","dependencies":[{"issue_id":"bd-8hy","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.23168-08:00","created_by":"daemon"}]} +{"id":"bd-bxha","title":"Default to YES for git hooks and merge driver installation","description":"Currently bd init prompts user to install git hooks and merge driver, but setup is incomplete if user declines. Change to install by default unless --skip-hooks or --skip-merge-driver flags are passed. Better safe defaults. If installation fails, warn user and suggest bd doctor --fix.","status":"open","priority":1,"issue_type":"feature","created_at":"2025-11-21T23:16:10.172238-08:00","updated_at":"2025-11-21T23:16:28.369137-08:00","dependencies":[{"issue_id":"bd-bxha","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:10.173034-08:00","created_by":"daemon"}]} +{"id":"bd-y4vz","title":"Work on beads-eub: Consolidated context tool for MCP serv...","description":"Work on beads-eub: Consolidated context tool for MCP server (GH#636). Merge set_context, where_am_i, init into single 'context' tool. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:58.527144-08:00","updated_at":"2025-12-20T00:49:51.929597-08:00","closed_at":"2025-12-19T23:31:11.906952-08:00"} +{"id":"bd-wc2","title":"Test body-file","description":"This is a test description from a file.\n\nIt has multiple lines.\n","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T17:27:20.508724-08:00","updated_at":"2025-12-17T17:28:33.83142-08:00","closed_at":"2025-12-17T17:28:33.83142-08:00"} +{"id":"bd-8e0q","title":"Merge: beads-ocs","description":"branch: polecat/valkyrie\ntarget: main\nsource_issue: beads-ocs\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:24:45.281478-08:00","updated_at":"2025-12-19T23:24:45.281478-08:00"} +{"id":"bd-iq7n","title":"Audit and fix JSONL filename mismatches across all repo clones","description":"## Problem\n\nMultiple clones of repos are configured with different JSONL filenames (issues.jsonl vs beads.jsonl), causing:\n1. JSONL files to be resurrected after deletion (one clone pushes issues.jsonl, another pushes beads.jsonl)\n2. Agents unable to see issues filed by other agents after sync\n3. Merge conflicts and data inconsistencies\n\n## Root Cause\n\nWhen repos were \"bd doctored\" or initialized at different times, some got issues.jsonl (old default) and others got beads.jsonl (Beads repo specific). These clones push their respective files, creating duplicates.\n\n## Task\n\nScan all repo clones under ~/src/ (1-2 levels deep) and standardize their JSONL configuration.\n\n### Step 1: Find all beads-enabled repos\n\n```bash\n# Find all directories named 'beads' at levels 1-2 under ~/src/\nfind ~/src -maxdepth 2 -type d -name beads\n```\n\n### Step 2: For each repo found, check configuration\n\nFor each directory from Step 1, check:\n- Does `.beads/metadata.json` exist?\n- What is the `jsonl_export` value?\n- What JSONL files actually exist in `.beads/`?\n- Are there multiple JSONL files (problem!)?\n\n### Step 3: Create audit report\n\nGenerate a report showing:\n```\nRepo Path | Config | Actual Files | Status\n----------------------------------- | ------------- | ---------------------- | --------\n~/src/beads | beads.jsonl | beads.jsonl | OK\n~/src/dave/beads | issues.jsonl | issues.jsonl | MISMATCH\n~/src/emma/beads | issues.jsonl | issues.jsonl, beads.jsonl | DUPLICATE!\n```\n\n### Step 4: Determine canonical name for each repo\n\nFor repos that are the SAME git repository (check `git remote -v`):\n- Group them together\n- Determine which JSONL filename should be canonical (majority wins, or beads.jsonl for the beads repo itself)\n- List which clones need to be updated\n\n### Step 5: Generate fix script\n\nCreate a script that for each mismatched clone:\n1. Updates `.beads/metadata.json` to use the canonical name\n2. If JSONL file needs renaming: `git mv .beads/old.jsonl .beads/new.jsonl`\n3. Removes any duplicate JSONL files: `git rm .beads/duplicate.jsonl`\n4. Commits the change\n5. Syncs: `bd sync`\n\n### Expected Output\n\n1. Audit report showing all repos and their config status\n2. List of repos grouped by git remote (same repository)\n3. Fix script or manual instructions for standardizing each repo\n4. Verification that after fixes, all clones of the same repo use the same JSONL filename\n\n### Edge Cases\n\n- Handle repos without metadata.json (use default discovery)\n- Handle repos with no git remote (standalone/local)\n- Handle repos that are not git repositories\n- Don't modify repos with uncommitted changes (warn instead)\n\n### Success Criteria\n\n- All clones of the same git repository use the same JSONL filename\n- No duplicate JSONL files in any repo\n- All configurations documented in metadata.json\n- bd doctor passes on all repos","status":"closed","issue_type":"task","created_at":"2025-11-21T23:58:35.044762-08:00","updated_at":"2025-12-17T23:13:40.531403-08:00","closed_at":"2025-12-17T16:50:59.510972-08:00"} +{"id":"bd-2q6d","title":"Beads commands operate on stale database without warning","description":"All beads read operations should validate database is in sync with JSONL before proceeding.\n\n**Current Behavior:**\n- Commands can query/read from stale database\n- Only mutation operations (like 'bd sync') check if JSONL is newer\n- User gets incorrect results without realizing database is out of sync\n\n**Expected Behavior:**\n- All beads commands should have pre-flight check for database freshness\n- If JSONL is newer than database, refuse to operate with error: \"Database out of sync. Run 'bd import' first.\"\n- Same safety check that exists for 'bd sync' should apply to ALL operations\n\n**Impact:**\n- Users make decisions based on incomplete/outdated data\n- Silent failures lead to confusion (e.g., thinking issues don't exist when they do)\n- Similar to running git commands on stale repo without being warned to pull\n\n**Example:**\n- Searched for bd-g9eu issue file: not found\n- Issue exists in .beads/issues.jsonl (in git)\n- Database was stale, but no warning was given\n- Led to incorrect conclusion that issue was already closed/deleted","notes":"## Implementation Complete\n\n**Phase 1: Created staleness check (cmd/bd/staleness.go)**\n- ensureDatabaseFresh() function checks JSONL mtime vs last_import_time\n- Returns error with helpful message when database is stale\n- Auto-skips in daemon mode (daemon has auto-import)\n\n**Phase 2: Added to all read commands**\n- list, show, ready, status, stale, info, duplicates, validate\n- Check runs before database queries in direct mode\n- Daemon mode already protected via checkAndAutoImportIfStale()\n\n**Phase 3: Code Review Findings**\nSee follow-up issues:\n- bd-XXXX: Add warning when staleness check errors\n- bd-YYYY: Improve CheckStaleness error handling\n- bd-ZZZZ: Refactor redundant daemon checks (low priority)\n\n**Testing:**\n- Build successful: go build ./cmd/bd\n- Binary works: ./bd --version\n- Ready for manual testing\n\n**Next Steps:**\n1. Test with stale database scenario\n2. Implement review improvements\n3. Close issue when tests pass","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-20T19:33:40.019297-05:00","updated_at":"2025-12-17T23:13:40.535149-08:00","closed_at":"2025-12-17T19:11:12.982639-08:00"} +{"id":"bd-qqc.1","title":"Update version to {{version}} in version.go","description":"Edit cmd/bd/version.go line 17:\n\n```go\nVersion = \"{{version}}\"\n```\n\nVerify with: `grep 'Version =' cmd/bd/version.go`","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:13.887087-08:00","updated_at":"2025-12-18T23:34:18.630067-08:00","closed_at":"2025-12-18T22:41:41.82664-08:00","dependencies":[{"issue_id":"bd-qqc.1","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:13.887655-08:00","created_by":"stevey"}]} +{"id":"bd-fom","title":"Remove all deletions.jsonl code except migration","description":"There's deletions manifest code spread across the entire codebase that should have been removed after tombstone migration:\n\nFiles with deletions code (non-migration):\n- internal/deletions/ - entire package\n- cmd/bd/sync.go - 25+ references, auto-compact, sanitize\n- cmd/bd/delete.go - dual-writes to deletions.jsonl\n- internal/importer/importer.go - checks deletions manifest\n- internal/syncbranch/worktree.go - merges deletions.jsonl\n- cmd/bd/doctor/fix/sync.go - cleanupDeletionsManifest\n- cmd/bd/doctor/fix/deletions.go - HydrateDeletionsManifest\n- cmd/bd/integrity.go - checks deletions for data loss\n- cmd/bd/deleted.go - entire command\n- cmd/bd/compact.go - pruneDeletionsManifest\n- cmd/bd/doctor.go - checkDeletionsManifest\n- Plus many more\n\nAction: Aggressively remove all non-migration deletions code. Tombstones are the only deletion mechanism now.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T13:29:04.960863-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-qqc","title":"Release v{{version}}","description":"Version bump workflow for beads release {{version}}.\n\n## Variables\n- `{{version}}` - The new version number (e.g., 0.31.0)\n- `{{date}}` - Release date (YYYY-MM-DD format)\n\n## Workflow Steps\n1. Kill running daemons\n2. Run tests and linting\n3. Bump version in all files (10 files total)\n4. Update cmd/bd/info.go with release notes\n5. Commit and push version bump\n6. Create and push git tag\n7. Update Homebrew formula\n8. Upgrade local Homebrew installation\n9. Verify installation\n\n## Files Updated by bump-version.sh\n- cmd/bd/version.go\n- .claude-plugin/plugin.json\n- .claude-plugin/marketplace.json\n- integrations/beads-mcp/pyproject.toml\n- integrations/beads-mcp/src/beads_mcp/__init__.py\n- README.md\n- npm-package/package.json\n- cmd/bd/templates/hooks/* (4 files)\n- CHANGELOG.md\n\n## Manual Step Required\n- cmd/bd/info.go - Add versionChanges entry with release notes","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-18T12:59:00.610371-08:00","updated_at":"2025-12-20T17:59:26.263219-08:00","closed_at":"2025-12-20T01:18:46.71424-08:00"} +{"id":"bd-rupw","title":"Run bump-version.sh 0.30.7","description":"Run ./scripts/bump-version.sh 0.30.7 to update version in all files","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649647-08:00","updated_at":"2025-12-19T22:57:31.512956-08:00","closed_at":"2025-12-19T22:57:31.512956-08:00","dependencies":[{"issue_id":"bd-rupw","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.653475-08:00","created_by":"stevey"}]} +{"id":"bd-pbh.16","title":"Update Homebrew formula","description":"After GoReleaser completes, the Homebrew tap should be auto-updated.\n\nIf manual update needed:\n```bash\n./scripts/update-homebrew.sh v0.30.4\n```\n\nOr manually update steveyegge/homebrew-beads with new SHA256.\n\nVerify:\n```bash\nbrew update\nbrew info beads\n```\n","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.100213-08:00","updated_at":"2025-12-17T21:46:46.341942-08:00","closed_at":"2025-12-17T21:46:46.341942-08:00","dependencies":[{"issue_id":"bd-pbh.16","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.100541-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.16","depends_on_id":"bd-pbh.13","type":"blocks","created_at":"2025-12-17T21:19:11.312625-08:00","created_by":"daemon"}]} +{"id":"bd-4hn","title":"wish: list \u0026 ready show issues as hierarchy tree","description":"`bd ready` and `bd list` just show a flat list, and it's up to the reader to parse which ones are dependent or sub-issues of others. It would be much easier to understand if they were shown in a tree format","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-08T06:38:24.016316945-07:00","updated_at":"2025-12-08T06:39:04.065882225-07:00"} +{"id":"bd-kwro","title":"Beads Messaging \u0026 Knowledge Graph (v0.30.2)","description":"Add messaging semantics and extended graph links to Beads, enabling it to serve as\nthe universal substrate for knowledge work - issues, messages, documents, and threads\nas nodes in a queryable graph.\n\n## Motivation\n\nGas Town (GGT) needs inter-agent communication. Rather than a separate mail system,\ncollapse messaging into Beads - one system, one sync, one query interface, all in git.\n\nThis also positions Beads as a foundation for:\n- Company-wide issue tracking (like Notion)\n- Threaded conversations (like Reddit/Slack)\n- Knowledge graphs with loose associations\n- Arbitrary workflow UIs built on top\n\n## New Issue Type\n\n**message** - ephemeral communication between workers\n- sender: who sent it\n- assignee: recipient\n- priority: P0 (urgent) to P4 (routine)\n- status: open (unread) -\u003e closed (read)\n- ephemeral: true = can be bulk-deleted after swarm\n\n## New Graph Links\n\n**replies_to** - conversation threading\n- Messages reply to messages\n- Enables Reddit-style nested threads\n- Different from parent_id (not hierarchy, its conversation flow)\n\n**relates_to** - loose see also associations\n- Bidirectional knowledge graph edges\n- Not blocking, not hierarchical, just related\n- Enables discovery and traversal\n\n**duplicates** - deduplication at scale\n- Mark issue B as duplicate of canonical issue A\n- Close B, link to A\n- Essential for large issue databases\n\n**supersedes** - version chains\n- Design Doc v2 supersedes Design Doc v1\n- Track evolution of artifacts\n\n## New Fields (optional, any issue type)\n\n- sender (string) - who created this (for messages)\n- ephemeral (boolean) - can be bulk-deleted when closed\n\n## New Commands\n\nMessaging:\n- bd mail send \u003crecipient\u003e -s Subject -m Body\n- bd mail inbox (list open messages for me)\n- bd mail read \u003cid\u003e (show message content)\n- bd mail ack \u003cid\u003e (mark as read/close)\n- bd mail reply \u003cid\u003e -m Response (reply to thread)\n\nGraph links:\n- bd relate \u003cid1\u003e \u003cid2\u003e (create relates_to link)\n- bd duplicate \u003cid\u003e --of \u003ccanonical\u003e (mark as duplicate)\n- bd supersede \u003cid\u003e --with \u003cnew\u003e (mark superseded)\n\nCleanup:\n- bd cleanup --ephemeral (delete closed ephemeral issues)\n\n## Identity Configuration\n\nWorkers need identity for sender field:\n- BEADS_IDENTITY env var\n- Or .beads/config.json: identity field\n\n## Hooks (for GGT integration)\n\nBeads as platform - extensible without knowing about GGT.\nHook files in .beads/hooks/:\n- on_create (runs after bd create)\n- on_update (runs after bd update)\n- on_close (runs after bd close)\n- on_message (runs after bd mail send)\n\nGGT registers hooks to notify daemons of new messages.\n\n## Schema Changes (Migration Required)\n\nAdd to issue schema:\n- type: message (new valid type)\n- sender: string (optional)\n- ephemeral: boolean (optional)\n- replies_to: string (issue ID, optional)\n- relates_to: []string (issue IDs, optional)\n- duplicates: string (canonical issue ID, optional)\n- superseded_by: string (new issue ID, optional)\n\nMigration adds fields as optional - existing beads unchanged.\n\n## Success Criteria\n\n1. bd mail send/inbox/read/ack/reply work end-to-end\n2. replies_to creates proper thread structure\n3. relates_to, duplicates, supersedes links queryable\n4. Hooks fire on create/update/close/message\n5. Identity configurable via env or config\n6. Migration preserves all existing data\n7. All new features have tests","status":"tombstone","issue_type":"epic","created_at":"2025-12-16T03:00:53.912223-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"epic"} +{"id":"bd-7yg","title":"Git merge driver uses invalid placeholders (%L, %R instead of %A, %B)","description":"## Problem\n\nThe beads git merge driver is configured with invalid Git placeholders:\n\n```\ngit config merge.beads.driver \"bd merge %A %O %L %R\"\n```\n\nGit doesn't recognize `%L` or `%R` as valid merge driver placeholders. The valid placeholders are:\n- `%O` = base (common ancestor)\n- `%A` = current version (ours)\n- `%B` = other version (theirs)\n\n## Impact\n\n- Affects ALL users when they have `.beads/beads.jsonl` merge conflicts\n- Automatic JSONL merge fails with error: \"error reading left file: failed to open file: open 7: no such file or directory\"\n- Users must manually resolve conflicts instead of getting automatic merge\n\n## Root Cause\n\nThe `bd init` command (or wherever the merge driver is configured) is using non-standard placeholders. When Git encounters `%L` and `%R`, it either passes them literally or interprets them incorrectly.\n\n## Fix\n\nUpdate the merge driver configuration to:\n```\ngit config merge.beads.driver \"bd merge %A %O %A %B\"\n```\n\nWhere:\n- 1st `%A` = output file (current file, will be overwritten)\n- `%O` = base (common ancestor)\n- 2nd `%A` = left/current version\n- `%B` = right/other version\n\n## Action Items\n\n1. Fix `bd init` (or equivalent setup command) to use correct placeholders\n2. Add migration/warning for existing users with misconfigured merge driver\n3. Update documentation with correct merge driver setup\n4. Consider adding validation when `bd init` is run","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-21T19:51:55.747608-05:00","updated_at":"2025-12-17T23:13:40.532368-08:00","closed_at":"2025-12-17T17:24:52.678668-08:00"} +{"id":"bd-r6a.3","title":"Create version-bump template as native Beads","description":"Migrate the version-bump workflow from YAML to a native Beads template:\n\n1. Create epic with template label: Release {{version}}\n2. Create child tasks for each step (update version files, changelog, commit, push, publish)\n3. Set up dependencies between tasks\n4. Add verification commands in task descriptions\n\nThis serves as both migration and validation of the new system.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T22:43:40.694931-08:00","updated_at":"2025-12-18T17:42:26.001149-08:00","closed_at":"2025-12-18T13:02:09.039457-08:00","dependencies":[{"issue_id":"bd-r6a.3","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:40.695392-08:00","created_by":"daemon"},{"issue_id":"bd-r6a.3","depends_on_id":"bd-r6a.2","type":"blocks","created_at":"2025-12-17T22:44:03.311902-08:00","created_by":"daemon"}]} +{"id":"bd-vgi5","title":"Push version bump to GitHub","description":"git push origin main - triggers CI but no release yet.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:05.363604-08:00","updated_at":"2025-12-18T22:46:57.50777-08:00","closed_at":"2025-12-18T22:46:57.50777-08:00","dependencies":[{"issue_id":"bd-vgi5","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.87736-08:00","created_by":"daemon"},{"issue_id":"bd-vgi5","depends_on_id":"bd-3ggb","type":"blocks","created_at":"2025-12-18T22:43:21.078208-08:00","created_by":"daemon"}]} +{"id":"bd-r6a.1","title":"Revert/remove YAML workflow system","description":"Revert the recent commit and remove all YAML workflow code:\n\n1. `git revert aae8407a` (the commit we just pushed with workflow fixes)\n2. Remove `cmd/bd/templates/workflows/` directory\n3. Remove workflow.go or gut it to minimal stub\n4. Remove WorkflowTemplate types from internal/types/workflow.go\n5. Remove any workflow-related RPC handlers\n\nKeep only minimal scaffolding if needed for the new template system.","status":"closed","issue_type":"task","created_at":"2025-12-17T22:42:07.339684-08:00","updated_at":"2025-12-17T22:46:08.606088-08:00","closed_at":"2025-12-17T22:46:08.606088-08:00","dependencies":[{"issue_id":"bd-r6a.1","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:42:07.340117-08:00","created_by":"daemon"}]} +{"id":"bd-2oo","title":"Edge Schema Consolidation: Unify all edges in dependencies table","description":"Consolidate all edge types into the dependency table per decision 004.\n\n## Changes\n- Add metadata column to dependencies table\n- Add thread_id column for conversation grouping\n- Remove redundant Issue fields: replies_to, relates_to, duplicate_of, superseded_by\n- Update all code to use dependencies API\n- Migration script for existing data\n- JSONL format change (breaking)\n\nReference: ~/gt/hop/decisions/004-edge-schema-consolidation.md","status":"closed","issue_type":"epic","created_at":"2025-12-18T02:01:48.785558-08:00","updated_at":"2025-12-18T02:49:10.61237-08:00","closed_at":"2025-12-18T02:49:10.61237-08:00"} +{"id":"bd-gocx","title":"Run bump-version.sh 0.32.1","description":"Execute ./scripts/bump-version.sh 0.32.1 to update all version references","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:18.470174-08:00","updated_at":"2025-12-20T21:54:54.500836-08:00","closed_at":"2025-12-20T21:54:54.500836-08:00","dependencies":[{"issue_id":"bd-gocx","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:18.471793-08:00","created_by":"daemon"},{"issue_id":"bd-gocx","depends_on_id":"bd-x3j8","type":"blocks","created_at":"2025-12-20T21:53:29.688436-08:00","created_by":"daemon"}]} +{"id":"bd-o55a","title":"GH#509: bd doesn't find .beads when running from nested worktrees","description":"When worktrees are nested under main repo (.worktrees/feature/), bd stops at worktree git root instead of continuing to find .beads in parent. See GitHub issue #509 for detailed fix suggestion.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:20.281591-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-2oo.2","title":"Remove redundant edge fields from Issue struct","description":"Remove from Issue struct:\n- RepliesTo -\u003e dependency with type replies-to\n- RelatesTo -\u003e dependencies with type relates-to \n- DuplicateOf -\u003e dependency with type duplicates\n- SupersededBy -\u003e dependency with type supersedes\n\nKeep: Sender, Ephemeral (these are attributes, not relationships)","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:00.891206-08:00","updated_at":"2025-12-18T02:49:10.584381-08:00","closed_at":"2025-12-18T02:49:10.584381-08:00","dependencies":[{"issue_id":"bd-2oo.2","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:00.891655-08:00","created_by":"daemon"}]} +{"id":"bd-7di","title":"worktree: any bd command is slow","description":"in a git worktree any bd command is slow, with a 2-3s pause before any results are shown. The identical command with `--no-daemon` is near instant.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-05T15:33:42.924618693-07:00","updated_at":"2025-12-05T15:33:42.924618693-07:00"} +{"id":"bd-hzvz","title":"Update info.go versionChanges","description":"Add entry to versionChanges in cmd/bd/info.go with agent-actionable changes for 0.30.7","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649359-08:00","updated_at":"2025-12-19T22:57:31.604229-08:00","closed_at":"2025-12-19T22:57:31.604229-08:00","dependencies":[{"issue_id":"bd-hzvz","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.652068-08:00","created_by":"stevey"},{"issue_id":"bd-hzvz","depends_on_id":"bd-2ep8","type":"blocks","created_at":"2025-12-19T22:56:48.652376-08:00","created_by":"stevey"}]} +{"id":"bd-dyy","title":"Review PR #513: fix hooks install docs","description":"Review and merge PR #513 from aspiers. This PR fixes incorrect docs for how to install git hooks - updates README to use bd hooks install instead of removed install.sh. Simple 1-line change. URL: https://github.com/anthropics/beads/pull/513","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:15:14.838772+11:00","updated_at":"2025-12-13T07:07:19.718544-08:00","closed_at":"2025-12-13T07:07:19.718544-08:00"} +{"id":"bd-bw6","title":"Fix G104 errors unhandled in internal/storage/sqlite/queries.go:1181","description":"Linting issue: G104: Errors unhandled (gosec) at internal/storage/sqlite/queries.go:1181:4. Error: rows.Close()","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:09.008444133-07:00","updated_at":"2025-12-17T23:13:40.536627-08:00","closed_at":"2025-12-17T16:46:11.029355-08:00"} +{"id":"bd-qkw9","title":"Run bump-version.sh {{version}}","description":"Run ./scripts/bump-version.sh {{version}} to update version in all files","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:55:58.841424-08:00","updated_at":"2025-12-20T17:59:26.262877-08:00","closed_at":"2025-12-20T01:18:48.99813-08:00","dependencies":[{"issue_id":"bd-qkw9","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:14.786027-08:00","created_by":"daemon"}]} +{"id":"bd-zf5w","title":"bd mail uses git user.name for sender instead of BEADS_AGENT_NAME","description":"When sending mail via `bd mail send`, the sender field in the stored issue uses git config user.name instead of the BEADS_AGENT_NAME environment variable.\n\nReproduction:\n1. Set BEADS_AGENT_NAME=gastown-alpha\n2. Run: bd mail send mayor/ -s 'Test' -m 'Body'\n3. Check the issue.jsonl: sender is 'Steve Yegge' (git user.name) not 'gastown-alpha'\n\nExpected: The sender field should use BEADS_AGENT_NAME when set.\n\nThis breaks the mail system for multi-agent workflows where agents need to identify themselves by their role (polecat, refinery, etc.) rather than the human user's git identity.\n\nRelated: gt mail routing integration with Gas Town","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-20T21:46:33.646746-08:00","updated_at":"2025-12-20T21:46:33.646746-08:00"} +{"id":"bd-tggf","title":"Code Health Review Dec 2025: Technical Debt Cleanup","description":"Epic grouping technical debt identified in the Dec 16, 2025 code health review.\n\n## Overall Health Grade: B (Solid foundation, needs cleanup)\n\n### P1 (High Priority):\n- bd-74w1: Consolidate duplicate path-finding utilities\n- bd-b6xo: Remove/fix ClearDirtyIssues() race condition\n- bd-b3og: Fix TestImportBugIntegration deadlock\n\n### P2 (Medium Priority):\n- bd-05a8: Split large files (doctor.go, sync.go)\n- bd-qioh: Standardize error handling patterns\n- bd-rgyd: Split queries.go (1586 lines)\n- bd-9g1z: Fix/remove TestFindJSONLPathDefault\n\n### P3 (Low Priority):\n- bd-ork0: Add comments to 30+ ignored errors\n- bd-4nqq: Remove dead test code in info_test.go\n- bd-dhza: Reduce global state in main.go\n\n## Key Areas:\n1. Code duplication in path utilities\n2. Large monolithic files (5 files \u003e1000 lines)\n3. Global state (25+ variables, 3 deprecated)\n4. Silent error suppression (30+ instances)\n5. Test gaps and dead test code\n6. Atomicity risks in batch operations","status":"open","priority":2,"issue_type":"epic","created_at":"2025-12-16T18:18:58.115507-08:00","updated_at":"2025-12-16T18:21:50.561709-08:00"} +{"id":"bd-ndye","title":"mergeDependencies uses union instead of 3-way merge","description":"## Critical Bug\n\nThe `mergeDependencies` function in internal/merge/merge.go performs a UNION of left and right dependencies instead of a proper 3-way merge. This causes removed dependencies to be resurrected.\n\n### Root Cause\n\n```go\n// Current code (lines 795-816):\nfunc mergeDependencies(left, right []Dependency) []Dependency {\n // Just unions left + right\n // NEVER REMOVES anything\n // Doesn't even look at base!\n}\n```\n\nAnd `mergeIssue` (line 579) doesn't pass `base`:\n```go\nresult.Dependencies = mergeDependencies(left.Dependencies, right.Dependencies)\n```\n\n### Impact\n\nIf:\n- Base has dependency D\n- Left removes D (intentional)\n- Right still has D (stale)\n\nCurrent: D is in result (resurrection!)\nCorrect: Left removed it, D should NOT be in result\n\nThis breaks Gas Town's workflow and data integrity. Closed means closed.\n\n### Fix\n\nChange `mergeDependencies` to take `base` and do proper 3-way merge:\n- If dep was in base and removed by left ā†’ exclude (left wins)\n- If dep was in base and removed by right ā†’ exclude (right wins)\n- If dep wasn't in base and added by either ā†’ include\n- If dep was in base and both still have it ā†’ include\n\nKey principle: **REMOVALS ARE AUTHORITATIVE**\n\n### Files to Change\n\n1. internal/merge/merge.go:\n - `mergeDependencies(left, right)` ā†’ `mergeDependencies(base, left, right)`\n - `mergeIssue` line 579: pass `base.Dependencies`\n\n### Related\n\nThis also explains why `ProtectLocalExportIDs` in importer is defined but never used - the protection was never actually implemented.","status":"closed","issue_type":"bug","created_at":"2025-12-18T23:15:54.475872-08:00","updated_at":"2025-12-18T23:21:10.709571-08:00","closed_at":"2025-12-18T23:21:10.709571-08:00"} +{"id":"bd-56x","title":"Review PR #514: fix plugin install docs","description":"Review and merge PR #514 from aspiers. This PR fixes incorrect docs for installing Claude Code plugin from source in docs/PLUGIN.md. Clarifies shell vs Claude Code commands and fixes the . vs ./beads argument issue. URL: https://github.com/anthropics/beads/pull/514","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:15:16.865354+11:00","updated_at":"2025-12-13T07:07:19.729213-08:00","closed_at":"2025-12-13T07:07:19.729213-08:00"} +{"id":"bd-kwro.2","title":"Graph Link: replies_to for conversation threading","description":"Implement replies_to link type for message threading.\n\nNew command:\n- bd mail reply \u003cid\u003e -m 'Response' creates a message with replies_to set\n\nQuery support:\n- bd show \u003cid\u003e --thread shows full conversation thread\n- Thread traversal in storage layer\n\nStorage:\n- replies_to column in issues table\n- Index for efficient thread queries\n\nThis enables Reddit-style nested threads where messages reply to other messages.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:25.292728-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-aydr.1","title":"Implement core reset package (internal/reset)","description":"Create the core reset logic in internal/reset/ package.\n\n## Responsibilities\n- ResetOptions struct with all flag options\n- CountImpact() - count issues/tombstones that will be deleted\n- ValidateState() - check .beads/ exists, check git dirty state\n- ExecuteReset() - main reset logic (without CLI concerns)\n- Integrate with daemon killall\n\n## Interface Design\n```go\ntype ResetOptions struct {\n Hard bool // Include git operations (git rm, commit)\n Backup bool // Create backup before reset\n DryRun bool // Preview only, don't execute\n SkipInit bool // Don't re-initialize after reset\n}\n\ntype ResetResult struct {\n IssuesDeleted int\n TombstonesDeleted int\n BackupPath string // if backup was created\n DaemonsKilled int\n}\n\ntype ImpactSummary struct {\n IssueCount int\n OpenCount int\n ClosedCount int\n TombstoneCount int\n HasUncommitted bool // git dirty state\n}\n\nfunc Reset(opts ResetOptions) (*ResetResult, error)\nfunc CountImpact() (*ImpactSummary, error)\nfunc ValidateState() error\n```\n\n## IMPORTANT: CLI vs Core Separation\n- `Force` (skip confirmation) is NOT in ResetOptions - that's a CLI concern\n- Core always executes when called; CLI decides whether to prompt first\n- Keep CLI-agnostic: no prompts, no colored output, no user interaction\n- Return errors for CLI to handle with user-friendly messages\n- Unit testable in isolation\n\n## Dependencies\n- Uses daemon.KillAllDaemons() from internal/daemon/\n- Calls bd init logic after reset (unless SkipInit)","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:50.145364+11:00","updated_at":"2025-12-13T10:13:32.610253+11:00","closed_at":"2025-12-13T09:20:06.184893+11:00","dependencies":[{"issue_id":"bd-aydr.1","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:50.145775+11:00","created_by":"daemon"}]} +{"id":"bd-aydr.3","title":"Add git operations for --hard reset","description":"Implement git integration for hard reset mode.\n\n## Operations Needed\n1. `git rm -rf .beads/*.jsonl` - remove data files from index\n2. `git commit -m 'beads: reset to clean state'` - commit removal\n3. After re-init: `git add .beads/` and commit fresh state\n\n## Edge Cases to Handle\n- Uncommitted changes in .beads/ - warn or error\n- Detached HEAD state - warn, maybe block\n- Git not initialized - skip git ops, warn\n- Git operations fail mid-way - clear error messaging\n\n## Interface\n```go\ntype GitState struct {\n IsRepo bool\n IsDirty bool // uncommitted changes in .beads/\n IsDetached bool // detached HEAD\n Branch string // current branch name\n}\n\nfunc CheckGitState(beadsDir string) (*GitState, error)\nfunc GitRemoveBeads(beadsDir string) error\nfunc GitCommitReset(message string) error\nfunc GitAddAndCommit(beadsDir, message string) error\n```\n\n## Location\n`internal/reset/git.go` - keep with reset package for now\n\nNote: Codebase has no central git package. internal/compact/git.go is compact-specific.\nFuture refactoring could extract shared git utilities, but YAGNI for now.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:52.798312+11:00","updated_at":"2025-12-13T10:13:32.611131+11:00","closed_at":"2025-12-13T09:17:40.785927+11:00","dependencies":[{"issue_id":"bd-aydr.3","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:52.798715+11:00","created_by":"daemon"}]} +{"id":"bd-hkr6","title":"GH#518: Document bd setup command","description":"bd setup is undiscoverable. Add to README/docs. Currently only findable by grepping source. See GitHub issue #518.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:54.664668-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-cbed9619.1","title":"Fix multi-round convergence for N-way collisions","description":"**Summary:** Multi-round collision resolution was identified as a critical issue preventing complete synchronization across distributed clones. The problem stemmed from incomplete final pulls that didn't fully propagate all changes between system instances.\n\n**Key Decisions:**\n- Implement multi-round sync mechanism\n- Ensure bounded convergence (ā‰¤N rounds)\n- Guarantee idempotent import without data loss\n\n**Resolution:** Developed a sync strategy that ensures all clones converge to the same complete set of issues, unblocking the bd-cbed9619 epic and improving distributed system reliability.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T21:22:21.486109-07:00","updated_at":"2025-12-17T23:18:29.111713-08:00","deleted_at":"2025-12-17T23:18:29.111713-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-bgm","title":"Fix unparam unused parameter in cmd/bd/doctor.go:1879","description":"Linting issue: checkGitHooks - path is unused (unparam) at cmd/bd/doctor.go:1879:20. Error: func checkGitHooks(path string) doctorCheck {","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:25.270293252-07:00","updated_at":"2025-12-17T23:13:40.532991-08:00","closed_at":"2025-12-17T16:46:11.026693-08:00"} +{"id":"bd-x3j8","title":"Update info.go versionChanges","description":"Add 0.32.1 entry to versionChanges map in cmd/bd/info.go","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:17.344841-08:00","updated_at":"2025-12-20T21:54:31.906761-08:00","closed_at":"2025-12-20T21:54:31.906761-08:00","dependencies":[{"issue_id":"bd-x3j8","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:17.346736-08:00","created_by":"daemon"},{"issue_id":"bd-x3j8","depends_on_id":"bd-rgd7","type":"blocks","created_at":"2025-12-20T21:53:29.62309-08:00","created_by":"daemon"}]} +{"id":"bd-adoe","title":"Add --hard flag to bd cleanup to permanently cull tombstones before cutoff date","description":"Currently tombstones persist for 30 days before cleanup prunes them. Need an official way to force-cull tombstones earlier than the default TTL, for scenarios like cleaning house after extended absence where resurrection from old clones is not a concern. Proposed: bd cleanup --hard --older-than N to bypass the 30-day tombstone TTL.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:17:31.064914-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} +{"id":"bd-eyrh","title":"šŸ¤ HANDOFF: Review remaining beads PRs","description":"## Current State\nJust merged PR #653 (doctor refactor) and added tests to restore coverage.\n\n## Remaining Open PRs to Review\nRun `gh pr list --repo steveyegge/beads` to see current list. As of handoff:\n\n1. #655 - feat: Linear Integration (jblwilliams)\n2. #651 - feat(audit): agent audit trail (dchichkov)\n3. #648 - Stop init creating redundant @AGENTS.md (maphew)\n4. #646 - fix(unix): handle Statfs field types (jordanhubbard)\n5. #645 - feat: /plan-to-beads Claude Code command (petebytes)\n6. #642, #641, #640 - sync branch fixes (cpdata)\n\n## Review Checklist\n- Check CI status with `gh pr checks \u003cnum\u003e --repo steveyegge/beads`\n- Verify no .beads/ data leaking (we have a hook now)\n- Review code quality\n- Merge good ones, request changes on problematic ones\n\n## Notes\n- User wants us to be proactive about merging good PRs\n- Can add tests ourselves if coverage drops","status":"closed","priority":2,"issue_type":"message","created_at":"2025-12-19T17:44:34.149837-08:00","updated_at":"2025-12-19T23:28:32.428731-08:00","closed_at":"2025-12-19T17:53:20.386937-08:00"} +{"id":"bd-i0rx","title":"Merge: bd-ao0s","description":"branch: polecat/rictus\ntarget: main\nsource_issue: bd-ao0s\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-20T01:13:42.716658-08:00","updated_at":"2025-12-20T01:13:42.716658-08:00"} +{"id":"bd-su45","title":"Protect pinned issues from bd cleanup/compact","description":"Update bd cleanup and bd compact to never delete pinned issues, even if they are closed. Pinned issues should persist indefinitely as reference material.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:46.204783-08:00","updated_at":"2025-12-19T17:43:35.712617-08:00","closed_at":"2025-12-19T00:43:04.06406-08:00","dependencies":[{"issue_id":"bd-su45","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.857586-08:00","created_by":"daemon"},{"issue_id":"bd-su45","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.64582-08:00","created_by":"daemon"}]} +{"id":"bd-8fgn","title":"test hash length","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T13:49:32.113843-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-hw3w","title":"Update info.go versionChanges","description":"Add entry to versionChanges in cmd/bd/info.go with agent-actionable changes for {{version}}","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:01.016558-08:00","updated_at":"2025-12-20T17:59:26.262511-08:00","closed_at":"2025-12-20T01:23:50.3879-08:00","dependencies":[{"issue_id":"bd-hw3w","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:14.941855-08:00","created_by":"daemon"},{"issue_id":"bd-hw3w","depends_on_id":"bd-czss","type":"blocks","created_at":"2025-12-19T22:56:23.219257-08:00","created_by":"daemon"}]} +{"id":"bd-svb5","title":"GH#505: Add bd reset/wipe command","description":"Add command to cleanly reset/wipe beads database. User reports painful manual process to start fresh. See GitHub issue #505.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:03:42.160966-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} +{"id":"bd-ao0s","title":"bd graph crashes with --no-daemon on closed issues","description":"The `bd graph` command panics with nil pointer dereference when using `--no-daemon` flag on an issue with closed children.\n\n**Reproduction:**\n```bash\nbd graph bd-qqc --no-daemon\n# panic: runtime error: invalid memory address or nil pointer dereference\n# in main.computeDependencyCounts\n```\n\n**Stack trace:**\n```\npanic: runtime error: invalid memory address or nil pointer dereference\n[signal SIGSEGV: segmentation violation code=0x2 addr=0x20 pc=0x1010bdfb0]\n\ngoroutine 1 [running]:\nmain.computeDependencyCounts(...)\n /Users/stevey/gt/beads/crew/emma/cmd/bd/graph.go:428\nmain.renderGraph(0x1400033bb80, 0x0)\n /Users/stevey/gt/beads/crew/emma/cmd/bd/graph.go:307 +0x300\n```\n\n**Location:** cmd/bd/graph.go:428 - computeDependencyCounts() not handling nil case","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-18T22:57:36.972585-08:00","updated_at":"2025-12-20T18:12:46.798548-08:00","closed_at":"2025-12-20T18:12:46.798548-08:00"} +{"id":"bd-llfl","title":"Improve test coverage for cmd/bd CLI (26.2% ā†’ 50%)","description":"The main CLI package (cmd/bd) has only 26.2% test coverage. CLI commands should have at least 50% coverage to ensure reliability.\n\nKey areas with low/no coverage:\n- daemon_autostart.go (multiple 0% functions)\n- compact.go (several 0% functions)\n- Various command handlers\n\nCurrent coverage: 26.2%\nTarget coverage: 50%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:03.123341-08:00","updated_at":"2025-12-13T21:01:18.901944-08:00"} +{"id":"bd-3x9o","title":"Merge: bd-by0d","description":"branch: polecat/furiosa\ntarget: main\nsource_issue: bd-by0d\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:21:26.817906-08:00","updated_at":"2025-12-19T23:21:26.817906-08:00"} +{"id":"bd-7b7h","title":"bd sync --merge fails due to chicken-and-egg: .beads/ always dirty","description":"## Problem\n\nWhen sync.branch is configured (e.g., beads-sync), the bd sync workflow creates a chicken-and-egg problem:\n\n1. `bd sync` commits changes to beads-sync via worktree\n2. `bd sync` copies JSONL to main working dir via `copyJSONLToMainRepo()` (sync.go line 364, worktree.go line 678-685)\n3. The copy is NOT committed to main - it just updates the working tree\n4. `bd sync --merge` checks for clean working dir (sync.go line 1547-1548)\n5. `bd sync --merge` FAILS because .beads/issues.jsonl is uncommitted!\n\n## Impact\n\n- sync.branch workflow is fundamentally broken\n- Users cannot periodically merge beads-sync ā†’ main\n- Main branch always shows as dirty\n- Creates confusion about git state\n\n## Root Cause\n\nsync.go:1547-1548:\n```go\nif len(strings.TrimSpace(string(statusOutput))) \u003e 0 {\n return fmt.Errorf(\"main branch has uncommitted changes, please commit or stash them first\")\n}\n```\n\nThis check blocks merge when ANY uncommitted changes exist, including the .beads/ changes that `bd sync` itself created.\n\n## Proposed Fix\n\nOption A: Exclude .beads/ from the clean check in `mergeSyncBranch`:\n```go\n// Check if there are non-beads uncommitted changes\nstatusCmd := exec.CommandContext(ctx, \"git\", \"status\", \"--porcelain\", \"--\", \":!.beads/\")\n```\n\nOption B: Auto-stash .beads/ changes before merge, restore after\n\nOption C: Change the workflow - do not copy JSONL to main working dir, instead always read from worktree\n\n## Files to Modify\n\n- cmd/bd/sync.go:1540-1549 (mergeSyncBranch function)\n- Possibly internal/syncbranch/worktree.go (copyJSONLToMainRepo)","notes":"## Fix Implemented\n\nModified cmd/bd/sync.go mergeSyncBranch function:\n\n1. **Exclude .beads/ from dirty check** (line 1543):\n Changed `git status --porcelain` to `git status --porcelain -- :!.beads/`\n This allows merge to proceed when only .beads/ has uncommitted changes.\n\n2. **Restore .beads/ to HEAD before merge** (lines 1553-1561):\n Added `git checkout HEAD -- .beads/` before merge to prevent\n \"Your local changes would be overwritten by merge\" errors.\n The .beads/ changes are redundant since they came FROM beads-sync.\n\n## Testing\n\n- All cmd/bd sync/merge tests pass\n- All internal/syncbranch tests pass\n- Manual verification needed for full workflow","status":"tombstone","issue_type":"bug","created_at":"2025-12-16T23:06:06.97703-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-cb64c226.13","title":"Audit Current Cache Usage","description":"**Summary:** Comprehensive audit of storage cache usage revealed minimal dependency across server components, with most calls following a consistent pattern. Investigation confirmed cache was largely unnecessary in single-repository daemon architecture.\n\n**Key Decisions:** \n- Remove all cache-related environment variables\n- Delete server struct cache management fields\n- Eliminate cache-specific test files\n- Deprecate req.Cwd routing logic\n\n**Resolution:** Cache system will be completely removed, simplifying server storage access and reducing unnecessary complexity with negligible performance impact.","notes":"AUDIT COMPLETE\n\ngetStorageForRequest() callers: 17 production + 11 test\n- server_issues_epics.go: 8 calls\n- server_labels_deps_comments.go: 4 calls \n- server_export_import_auto.go: 2 calls\n- server_compact.go: 2 calls\n- server_routing_validation_diagnostics.go: 1 call\n- server_eviction_test.go: 11 calls (DELETE entire file)\n\nPattern everywhere: store, err := s.getStorageForRequest(req) ā†’ store := s.storage\n\nreq.Cwd usage: Only for multi-repo routing. Local daemon always serves 1 repo, so routing is unused.\n\nMCP server: Uses separate daemons per repo (no req.Cwd usage found). NOT affected by cache removal.\n\nCache env vars to deprecate:\n- BEADS_DAEMON_MAX_CACHE_SIZE (used in server_core.go:63)\n- BEADS_DAEMON_CACHE_TTL (used in server_core.go:72)\n- BEADS_DAEMON_MEMORY_THRESHOLD_MB (used in server_cache_storage.go:47)\n\nServer struct fields to remove:\n- storageCache, cacheMu, maxCacheSize, cacheTTL, cleanupTicker, cacheHits, cacheMisses\n\nTests to delete:\n- server_eviction_test.go (entire file - 9 tests)\n- limits_test.go cache assertions\n\nSpecial consideration: ValidateDatabase endpoint uses findDatabaseForCwd() outside cache. Verify if used, then remove or inline.\n\nSafe to proceed with removal - cache always had 1 entry in local daemon model.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:19.3723-07:00","updated_at":"2025-12-17T23:18:29.111369-08:00","deleted_at":"2025-12-17T23:18:29.111369-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-dwh","title":"Implement or remove ExpectExit/ExpectStdout verification fields","description":"The Verification struct in internal/types/workflow.go has ExpectExit and ExpectStdout fields that are never used by workflowVerifyCmd. Either implement the functionality or remove the dead fields.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-17T22:23:02.708627-08:00","updated_at":"2025-12-17T22:34:07.300348-08:00","closed_at":"2025-12-17T22:34:07.300348-08:00"} +{"id":"bd-pbh.17","title":"Install 0.30.4 Go binary locally","description":"Rebuild and install the Go binary:\n```bash\ngo install ./cmd/bd\n# OR\nmake install\n```\n\nVerify:\n```bash\nbd --version\n```\n\n\n```verify\nbd --version 2\u003e\u00261 | grep -q '0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.108597-08:00","updated_at":"2025-12-17T21:46:46.352702-08:00","closed_at":"2025-12-17T21:46:46.352702-08:00","dependencies":[{"issue_id":"bd-pbh.17","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.108917-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.17","depends_on_id":"bd-pbh.13","type":"blocks","created_at":"2025-12-17T21:19:11.322091-08:00","created_by":"daemon"}]} +{"id":"bd-cb64c226.6","title":"Verify MCP Server Compatibility","description":"Ensure MCP server works with cache-free daemon","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:56:03.241615-07:00","updated_at":"2025-12-17T23:18:29.109644-08:00","deleted_at":"2025-12-17T23:18:29.109644-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-dsdh","title":"Document sync.branch 'always dirty' working tree behavior","description":"## Context\n\nWhen sync.branch is configured, the .beads/issues.jsonl file in main's working tree is ALWAYS dirty. This is by design:\n\n1. bd sync commits to beads-sync branch (via worktree)\n2. bd sync copies JSONL to main's working tree (so CLI commands work)\n3. This copy is NOT committed to main (to reduce commit noise)\n\nContributors who watch main branch history pushed for sync.branch to avoid constant beads commit noise. But users need to understand the trade-off.\n\n## Documentation Needed\n\nUpdate README.md sync.branch section with:\n\n1. **Clear explanation** of why .beads/ is always dirty on main\n2. **\"Be Zen about it\"** - this is expected, not a bug\n3. **Workflow options:**\n - Accept dirty state, use `bd sync --merge` periodically to snapshot to main\n - Or disable sync.branch if clean working tree is more important\n4. **Shell alias tip** to hide beads from git status:\n ```bash\n alias gs='git status -- \":!.beads/\"'\n ```\n5. **When to merge**: releases, milestones, or periodic snapshots\n\n## Related\n\n- bd-7b7h: Fix that allows bd sync --merge to work with dirty .beads/\n- bd-elqd: Investigation that identified this as expected behavior","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T23:16:12.253559-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-kwro.11","title":"Documentation for messaging and graph links","description":"Document all new features.\n\nFiles to update:\n- README.md - brief mention of messaging capability\n- AGENTS.md - update for AI agents using bd mail\n- docs/messaging.md (new) - full messaging reference\n- docs/graph-links.md (new) - graph link reference\n- CHANGELOG.md - v0.30.2 release notes\n\nTopics to cover:\n- Mail commands with examples\n- Graph link types and use cases\n- Identity configuration\n- Hooks setup for notifications\n- Migration notes","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T03:02:39.548518-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-czss","title":"Update CHANGELOG.md with release notes","description":"Add meaningful release notes to CHANGELOG.md describing what changed in {{version}}","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:55:59.909641-08:00","updated_at":"2025-12-20T17:59:26.262153-08:00","closed_at":"2025-12-20T01:23:51.407302-08:00","dependencies":[{"issue_id":"bd-czss","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:14.862724-08:00","created_by":"daemon"},{"issue_id":"bd-czss","depends_on_id":"bd-qkw9","type":"blocks","created_at":"2025-12-19T22:56:23.145894-08:00","created_by":"daemon"}]} +{"id":"bd-c2xs","title":"Exclude pinned issues from bd blocked","description":"Update bd blocked to exclude pinned issues. Pinned issues are context markers and should not appear in the blocked work list.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:44.684242-08:00","updated_at":"2025-12-18T23:33:44.684242-08:00","dependencies":[{"issue_id":"bd-c2xs","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.521323-08:00","created_by":"daemon"},{"issue_id":"bd-c2xs","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.736681-08:00","created_by":"daemon"}]} +{"id":"bd-pbh.13","title":"Monitor GoReleaser CI job","description":"Watch the GoReleaser action:\nhttps://github.com/steveyegge/beads/actions/workflows/release.yml\n\nShould complete in ~10 minutes and create:\n- GitHub Release with binaries for all platforms\n- Checksums and signatures\n\nCheck status:\n```bash\ngh run list --workflow=release.yml -L 1\ngh run watch # to monitor live\n```\n\nVerify release exists:\n```bash\ngh release view v0.30.4\n```\n\n\n```verify\ngh release view v0.30.4 --json tagName -q .tagName | grep -q 'v0.30.4'\n```","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.074476-08:00","updated_at":"2025-12-17T21:46:46.311506-08:00","closed_at":"2025-12-17T21:46:46.311506-08:00","dependencies":[{"issue_id":"bd-pbh.13","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.074833-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.13","depends_on_id":"bd-pbh.12","type":"blocks","created_at":"2025-12-17T21:19:11.279092-08:00","created_by":"daemon"}]} +{"id":"bd-x1xs","title":"Work on beads-1ra: Add molecules.jsonl as separate catalo...","description":"Work on beads-1ra: Add molecules.jsonl as separate catalog file for template molecules","status":"in_progress","priority":2,"issue_type":"task","created_at":"2025-12-19T20:17:44.840032-08:00","updated_at":"2025-12-19T20:17:44.905944-08:00"} +{"id":"bd-kwro.9","title":"Cleanup: --ephemeral flag","description":"Update bd cleanup to handle ephemeral issues.\n\nNew flag:\n- bd cleanup --ephemeral - deletes all CLOSED issues with ephemeral=true\n\nBehavior:\n- Only deletes if status=closed AND ephemeral=true\n- Respects --dry-run flag\n- Reports count of deleted ephemeral issues\n\nThis allows swarm cleanup to remove transient messages without affecting permanent issues.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T03:02:28.563871-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-r36u","title":"gt mq list shows empty when MRs exist","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-20T01:13:07.561256-08:00","updated_at":"2025-12-20T01:13:07.561256-08:00"} +{"id":"bd-d4jl","title":"Commit and push release","description":"git add -A \u0026\u0026 git commit -m 'chore: bump version to 0.32.1' \u0026\u0026 git push","status":"in_progress","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:21.928138-08:00","updated_at":"2025-12-20T21:55:49.122362-08:00","dependencies":[{"issue_id":"bd-d4jl","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:21.930015-08:00","created_by":"daemon"},{"issue_id":"bd-d4jl","depends_on_id":"bd-tj00","type":"blocks","created_at":"2025-12-20T21:53:29.884457-08:00","created_by":"daemon"}]} +{"id":"bd-pbh.4","title":"Update .claude-plugin/plugin.json to 0.30.4","description":"Update version field in .claude-plugin/plugin.json:\n```json\n\"version\": \"0.30.4\"\n```\n\n\n```verify\njq -e '.version == \"0.30.4\"' .claude-plugin/plugin.json\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.976866-08:00","updated_at":"2025-12-17T21:46:46.23159-08:00","closed_at":"2025-12-17T21:46:46.23159-08:00","dependencies":[{"issue_id":"bd-pbh.4","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.97729-08:00","created_by":"daemon"}]} +{"id":"bd-hlsw","title":"Add sync resilience guardrails for forced pushes and prefix mismatches","description":"Beads can get into unrecoverable sync states when remote forces pushes occur (e.g., rebases) combined with prefix mismatches from multi-worker scenarios. Add detection, prevention, and auto-recovery features to handle this gracefully.","status":"open","priority":2,"issue_type":"epic","created_at":"2025-12-14T10:40:14.872875259-07:00","updated_at":"2025-12-14T10:40:14.872875259-07:00"} +{"id":"bd-zc3","title":"Add --pinned and --no-pinned flags to bd list","description":"Add filtering flags to bd list: --pinned shows only pinned issues, --no-pinned excludes pinned issues. Default behavior shows all issues with a pin indicator.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:29.518028-08:00","updated_at":"2025-12-18T23:33:29.518028-08:00","dependencies":[{"issue_id":"bd-zc3","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.256764-08:00","created_by":"daemon"},{"issue_id":"bd-zc3","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.486361-08:00","created_by":"daemon"}]} +{"id":"bd-thgk","title":"Improve test coverage for internal/compact (18.2% ā†’ 70%)","description":"The compact package has only 18.2% test coverage. This is a core package handling issue compaction and should have at least 70% coverage.\n\nKey functions needing tests:\n- runCompactSingle (0%)\n- runCompactAll (0%)\n- runCompactRPC (0%)\n- runCompactStatsRPC (0%)\n- runCompactAnalyze (0%)\n- runCompactApply (0%)\n- pruneDeletionsManifest (0%)\n\nCurrent coverage: 18.2%\nTarget coverage: 70%","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-13T20:42:58.455767-08:00","updated_at":"2025-12-13T21:01:15.070551-08:00"} +{"id":"bd-y2v","title":"Refactor duplicate JSONL-from-git parsing code","description":"Both readFirstIssueFromGit() in init.go and importFromGit() in autoimport.go have similar code patterns for:\n1. Running git show \u003cref\u003e:\u003cpath\u003e\n2. Scanning the output with bufio.Scanner\n3. Parsing JSON lines\n\nCould be refactored to share a helper like:\n- readJSONLFromGit(gitRef, path string) ([]byte, error)\n- Or a streaming version: streamJSONLFromGit(gitRef, path string) (io.Reader, error)\n\nFiles:\n- cmd/bd/autoimport.go:225-256 (importFromGit)\n- cmd/bd/init.go:1212-1243 (readFirstIssueFromGit)\n\nPriority is low since code duplication is minimal and both functions work correctly.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-05T14:51:18.41124-08:00","updated_at":"2025-12-05T14:51:18.41124-08:00"} +{"id":"bd-in7","title":"Test message","description":"Hello world","status":"closed","priority":2,"issue_type":"message","created_at":"2025-12-17T23:16:13.184946-08:00","updated_at":"2025-12-18T17:42:26.000073-08:00","closed_at":"2025-12-17T23:37:38.563369-08:00"} +{"id":"bd-pe4s","title":"JSON test issue","description":"Line 1\nLine 2\nLine 3","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T16:14:36.969074-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-2wh","title":"Test pinned for stats","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-18T21:47:09.334108-08:00","updated_at":"2025-12-18T21:47:25.17917-08:00","deleted_at":"2025-12-18T21:47:25.17917-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-ncwo","title":"Ghost resurrection: remote status:closed wins during git merge","description":"During bd sync, the 3-way git merge sometimes keeps remote's status:closed instead of local's status:tombstone. This causes ghost issues to resurrect even when tombstones exist.\n\nRoot cause: Git 3-way merge doesn't understand tombstone semantics. If base had closed, local changed to tombstone, and remote has closed, git might keep remote's version.\n\nThe early tombstone check in importer.go only prevents CREATION when tombstones exist in DB. But if applyDeletionsFromMerge hard-deletes the tombstones before import runs (because they're not in the merged result), the check doesn't help.\n\nPotential fixes:\n1. Make tombstones 'win' in the beads merge driver (internal/merge/merge.go)\n2. Don't hard-delete tombstones in applyDeletionsFromMerge if they're in the DB\n3. Export tombstones to a separate file that's not subject to merge\n\nGhost issues: bd-cb64c226.*, bd-cbed9619.*","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T22:01:03.56423-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-b3og","title":"Fix TestImportBugIntegration deadlock in importer_test.go","description":"Code health review found internal/importer/importer_test.go has TestImportBugIntegration skipped with:\n\nTODO: Test hangs due to database deadlock - needs investigation\n\nThis indicates a potential unresolved concurrency issue in the importer. The test has been skipped for an unknown duration.\n\nFix: Investigate the deadlock, fix the underlying issue, and re-enable the test.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T18:17:22.103838-08:00","updated_at":"2025-12-17T23:13:40.529671-08:00","closed_at":"2025-12-17T17:25:26.645901-08:00","dependencies":[{"issue_id":"bd-b3og","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.740642-08:00","created_by":"daemon"}]} +{"id":"bd-20j","title":"sync branch not match config","description":"./bd sync\nā†’ Exporting pending changes to JSONL...\nā†’ No changes to commit\nā†’ Pulling from sync branch 'gh-386'...\nError pulling from sync branch: failed to create worktree: failed to create worktree parent directory: mkdir /var/home/matt/dev/beads/worktree-db-fail/.git: not a directory\nmatt@blufin-framation ~/d/b/worktree-db-fail (worktree-db-fail) [1]\u003e bd config list\n\nConfiguration:\n auto_compact_enabled = false\n compact_batch_size = 50\n compact_model = claude-3-5-haiku-20241022\n compact_parallel_workers = 5\n compact_tier1_days = 30\n compact_tier1_dep_levels = 2\n compact_tier2_commits = 100\n compact_tier2_days = 90\n compact_tier2_dep_levels = 5\n compaction_enabled = false\n issue_prefix = worktree-db-fail\n sync.branch = worktree-db-fail","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-08T06:49:04.449094018-07:00","updated_at":"2025-12-08T06:49:04.449094018-07:00"} +{"id":"bd-elqd","title":"Systematic bd sync stability investigation","description":"## Context\n\nbd sync has chronic instability issues that have persisted since inception:\n- issues.jsonl is always dirty after push\n- bd sync often creates messes requiring manual cleanup\n- Problems escalating despite accumulated bug fixes\n- Workarounds are getting increasingly draconian\n\n## Goal\n\nSystematically observe and diagnose bd sync failures rather than applying band-aid fixes.\n\n## Approach\n\n1. Start fresh session with latest binary (all fixes applied)\n2. Run bd sync and carefully observe what happens\n3. Document exact sequence of events when things go wrong\n4. File specific issues for each discrete problem identified\n5. Track the root causes, not just symptoms\n\n## Test Environment\n\n- Fresh clone or clean state\n- Latest bd binary with all bug fixes\n- Monitor both local and remote JSONL state\n- Check for timing issues, race conditions, merge conflicts\n\n## Success Criteria\n\n- Identify root causes of sync instability\n- Create actionable issues for each problem\n- Eventually achieve stable bd sync (no manual intervention needed)","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T22:57:25.35289-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-4ec8","title":"Widespread double JSON encoding bug in daemon mode RPC calls","description":"Multiple CLI commands had the same double JSON encoding bug found in bd-1048. All commands that called ResolveID via RPC used string(resp.Data) instead of properly unmarshaling the JSON response. This caused IDs to retain JSON quotes (\"bd-1048\" instead of bd-1048), which then got double-encoded when passed to subsequent RPC calls.\n\nAffected commands:\n- bd show (3 instances)\n- bd dep add/remove/tree (5 instances)\n- bd label add/remove/list (3 instances)\n- bd reopen (1 instance)\n\nRoot cause: resp.Data is json.RawMessage (already JSON-encoded), so string() conversion preserves quotes.\n\nFix: Replace all string(resp.Data) with json.Unmarshal(resp.Data, \u0026id) for proper deserialization.\n\nAll commands now tested and working correctly with daemon mode.","status":"closed","issue_type":"bug","created_at":"2025-11-02T22:33:01.632691-08:00","updated_at":"2025-12-17T23:13:40.533631-08:00","closed_at":"2025-12-17T16:26:05.851197-08:00"} +{"id":"bd-haze","title":"Fix beads-9yc: pinned column missing from schema. gt mail...","description":"Fix beads-9yc: pinned column missing from schema. gt mail send fails because some beads DBs lack the pinned column. Add migration to ensure it exists.","status":"in_progress","priority":2,"issue_type":"task","created_at":"2025-12-19T15:05:33.394801-08:00","updated_at":"2025-12-19T15:05:33.524491-08:00"} +{"id":"bd-8v2","title":"Add {{version}} to versionChanges in info.go","description":"Add new entry at TOP of versionChanges in cmd/bd/info.go with release notes from CHANGELOG.md. Must do before bump-version.sh --commit.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:00.482846-08:00","updated_at":"2025-12-18T22:45:21.465817-08:00","closed_at":"2025-12-18T22:45:21.465817-08:00","dependencies":[{"issue_id":"bd-8v2","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.496649-08:00","created_by":"daemon"},{"issue_id":"bd-8v2","depends_on_id":"bd-kyo","type":"blocks","created_at":"2025-12-18T22:43:20.69619-08:00","created_by":"daemon"}]} +{"id":"bd-ykd9","title":"Add bd doctor --fix flag to automatically repair issues","description":"Implement a --fix flag for bd doctor that can automatically repair detected issues.\n\nRequirements:\n- Add --fix flag to bd doctor command\n- Show all fixable issues and prompt for confirmation before applying fixes\n- Organize fix implementations under doctor/fix/\u003ctype_of_fix\u003e.go\n- Each fix type should have its own file (e.g., doctor/fix/hooks.go, doctor/fix/sync.go)\n- Display what will be fixed and ask user to confirm (Y/n) before proceeding\n- Support fixing issues like:\n - Missing or broken git hooks\n - Sync problems with remote\n - File permission issues\n - Any other auto-repairable issues doctor detects\n\nImplementation notes:\n- Maintain separation between detection (existing doctor code) and repair (new fix code)\n- Each fix should be idempotent and safe to run multiple times\n- Provide clear output about what was fixed\n- Log any fixes that fail with actionable error messages","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-14T18:17:48.411264-08:00","updated_at":"2025-11-14T18:17:58.88609-08:00"} +{"id":"bd-4q8","title":"bd cleanup --hard should skip tombstone creation for true permanent deletion","description":"## Problem\n\nWhen using bd cleanup --hard --older-than N --force, the command:\n1. Deletes closed issues older than N days (converting them to tombstones with NOW timestamp)\n2. Then tries to prune tombstones older than N days (finds none because they were just created)\n\nThis leaves the database bloated with fresh tombstones that will not be pruned.\n\n## Expected Behavior\n\nIn --hard mode, the deletion should be permanent without creating tombstones, since the user explicitly requested bypassing sync safety.\n\n## Workaround\n\nManually delete from database: sqlite3 .beads/beads.db 'DELETE FROM issues WHERE status=tombstone'\n\n## Fix Options\n\n1. In --hard mode, use a different delete path that does not create tombstones\n2. After deleting, immediately prune the just-created tombstones regardless of age\n3. Pass a skip_tombstone flag to the delete operation\n\nOption 1 is cleanest - --hard should mean permanent delete without tombstone.","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T01:33:36.580657-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-0kai","title":"Work on beads-ocs: Thin shim hooks to eliminate version d...","description":"Work on beads-ocs: Thin shim hooks to eliminate version drift (GH#615). Replace full hook scripts with thin shims that call bd hooks run. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:57:22.91347-08:00","updated_at":"2025-12-20T00:49:51.926425-08:00","closed_at":"2025-12-19T23:24:08.828172-08:00"} +{"id":"bd-hlsw.3","title":"Auto-recovery mode (bd sync --auto-recover)","description":"Add bd sync --auto-recover flag that: detects problematic sync state, backs up .beads/issues.db with timestamp, rebuilds DB from JSONL atomically, verifies consistency, reports what was fixed. Provides safety valve when sync integrity fails.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-14T10:40:20.599836875-07:00","updated_at":"2025-12-14T10:40:20.599836875-07:00","dependencies":[{"issue_id":"bd-hlsw.3","depends_on_id":"bd-hlsw","type":"parent-child","created_at":"2025-12-14T10:40:20.600435888-07:00","created_by":"daemon"}]} +{"id":"bd-au0.10","title":"Add global verbosity flags (--verbose, --quiet)","description":"Add consistent verbosity controls across all commands.\n\n**Current state:**\n- bd init has --quiet flag\n- No other commands have verbosity controls\n- Debug output controlled by BD_VERBOSE env var\n\n**Proposal:**\nAdd persistent flags:\n- --verbose / -v: Enable debug output\n- --quiet / -q: Suppress non-essential output\n\n**Implementation:**\n- Add to rootCmd.PersistentFlags()\n- Replace BD_VERBOSE checks with flag checks\n- Standardize output levels:\n * Quiet: Errors only\n * Normal: Errors + success messages\n * Verbose: Errors + success + debug info\n\n**Files to modify:**\n- cmd/bd/main.go (add flags)\n- internal/debug/debug.go (respect flags)\n- Update all commands to respect quiet mode\n\n**Testing:**\n- Verify --verbose shows debug output\n- Verify --quiet suppresses normal output\n- Ensure errors always show regardless of mode","status":"open","priority":3,"issue_type":"task","created_at":"2025-11-21T21:08:21.600209-05:00","updated_at":"2025-11-21T21:08:21.600209-05:00","dependencies":[{"issue_id":"bd-au0.10","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:08:21.602557-05:00","created_by":"daemon"}]} +{"id":"bd-e1085716","title":"bd validate - Comprehensive health check","description":"Run all validation checks in one command.\n\nChecks:\n- Duplicates\n- Orphaned dependencies\n- Test pollution\n- Git conflicts\n\nSupports --fix-all for auto-repair.\n\nDepends on bd-cbed9619.1, bd-0dcea000, bd-31aab707, bd-9826b69a.\n\nFiles: cmd/bd/validate.go (new)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-10-29T23:05:13.980679-07:00","updated_at":"2025-12-17T22:58:34.562008-08:00","closed_at":"2025-12-17T22:58:34.562008-08:00"} +{"id":"bd-p5za","title":"mol-christmas-launch: 3-day execution plan","description":"Christmas Launch Molecule - execute phases in order, survive restarts.\n\nPIN THIS BEAD. Check progress each session start.\n\n## Step: phase0-beads-foundation\nFix blocking issues before swarming:\n1. Verify gastown beads schema works: bd list --status=open\n2. Ensure bd mol bond exists (check bd-usro)\n3. Verify bd-2vh3 (squash) is filed\n\n## Step: phase1-polecat-loop\nSerial work on polecat execution:\n1. gt-9nf: Fresh polecats only\n2. gt-975: Molecule execution support\n3. gt-8v8: Refuse uncommitted work\nThen swarm: gt-e1y, gt-f8v, gt-eu9\nNeeds: phase0-beads-foundation\n\n## Step: phase2-refinery\nSerial work on refinery autonomy:\n1. gt-5gkd: Refinery CLAUDE.md\n2. gt-bj6f: Refinery context in gt prime\n3. gt-0qki: Refinery-Witness protocol\nNeeds: phase1-polecat-loop\n\n## Step: phase3-deacon\nHealth monitoring infrastructure:\n1. gt-5af.4: Simplify daemon\n2. gt-5af.7: Crew session patterns\n3. gt-976: Crew lifecycle\nNeeds: phase2-refinery\n\n## Step: phase4-code-review\nSelf-improvement flywheel:\n1. Define mol-code-review (gt-fjvo)\n2. Test on open MRs\n3. Integrate with Refinery\nNeeds: phase3-deacon\n\n## Step: phase5-polish\nDemo readiness:\n1. gt-b2hj: Find orphaned work\n2. Doctor checks\n3. Clean up open MRs\nNeeds: phase4-code-review\n\n## Step: verify-flywheel\nSuccess criteria:\n- gt spawn works with molecules\n- Refinery processes MRs autonomously\n- mol-code-review runs on a PR\n- bd cleanup --ephemeral works\nNeeds: phase5-polish","status":"open","issue_type":"epic","created_at":"2025-12-20T21:20:02.462889-08:00","updated_at":"2025-12-20T21:20:02.462889-08:00"} +{"id":"bd-de6","title":"Fix FindBeadsDir to prioritize main repo .beads for worktrees","description":"The FindBeadsDir function should prioritize finding .beads in the main repository root when accessed from a worktree, rather than finding worktree-local .beads directories. This ensures proper sharing of the database across all worktrees.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-07T16:48:36.883117467-07:00","updated_at":"2025-12-07T16:48:36.883117467-07:00"} +{"id":"bd-kqo1","title":"Show pin indicator in bd list output","description":"Add a visual indicator (e.g., pin emoji or [P] marker) for pinned issues in bd list output so users can easily identify them.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-18T23:33:47.402549-08:00","updated_at":"2025-12-18T23:33:47.402549-08:00","dependencies":[{"issue_id":"bd-kqo1","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.771791-08:00","created_by":"daemon"},{"issue_id":"bd-kqo1","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.985271-08:00","created_by":"daemon"}]} +{"id":"bd-pbh.15","title":"Monitor npm publish","description":"Watch the npm publish action:\nhttps://github.com/steveyegge/beads/actions/workflows/npm-publish.yml\n\nVerify at: https://www.npmjs.com/package/@anthropics/claude-code-beads-plugin/v/0.30.4\n\nCheck:\n```bash\nnpm view @anthropics/claude-code-beads-plugin@0.30.4 version\n```\n\n\n```verify\nnpm view @anthropics/claude-code-beads-plugin@0.30.4 version 2\u003e/dev/null | grep -q '0.30.4'\n```","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.091806-08:00","updated_at":"2025-12-17T21:46:46.333213-08:00","closed_at":"2025-12-17T21:46:46.333213-08:00","dependencies":[{"issue_id":"bd-pbh.15","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.092205-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.15","depends_on_id":"bd-pbh.12","type":"blocks","created_at":"2025-12-17T21:19:11.301843-08:00","created_by":"daemon"}]} +{"id":"bd-1tw","title":"Fix G104 errors unhandled in internal/storage/sqlite/queries.go:1186","description":"Linting issue: G104: Errors unhandled (gosec) at internal/storage/sqlite/queries.go:1186:2. Error: rows.Close()","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:13.051671889-07:00","updated_at":"2025-12-17T23:13:40.53486-08:00","closed_at":"2025-12-17T16:46:11.0289-08:00"} +{"id":"bd-crgr","title":"GH#517: Claude sets priority wrong on new install","description":"Claude uses 'medium/high/low' for priority instead of P0-P4. Update bd prime/onboard output to be clearer about priority syntax. See GitHub issue #517.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:34.803084-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-fgw3","title":"Update local installation","description":"Run install script or brew upgrade to get new version locally: curl -fsSL .../install.sh | bash","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:05.052016-08:00","updated_at":"2025-12-20T00:49:51.928221-08:00","closed_at":"2025-12-20T00:25:52.805029-08:00","dependencies":[{"issue_id":"bd-fgw3","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.248427-08:00","created_by":"daemon"},{"issue_id":"bd-fgw3","depends_on_id":"bd-si4g","type":"blocks","created_at":"2025-12-19T22:56:23.497325-08:00","created_by":"daemon"}]} +{"id":"bd-4lm3","title":"Correction: Pinned field already in v0.31.0","description":"Quick correction - the Pinned field is already in the current bd v0.31.0:\n\n```go\n// In beads internal/types/types.go\nPinned bool `json:\"pinned,omitempty\"`\n```\n\nSo you just need to:\n1. Add `Pinned bool `json:\"pinned,omitempty\"`` to BeadsMessage in types.go\n2. Sort pinned messages first in listBeads() after fetching\n\nNo migration needed - the field is already there.\n\n-- Mayor","status":"open","priority":2,"issue_type":"message","created_at":"2025-12-20T17:52:27.321458-08:00","updated_at":"2025-12-20T17:52:27.321458-08:00"} +{"id":"bd-lw0x","title":"Fix bd sync race condition with daemon causing dirty working directory","description":"After bd sync completes with sync.branch mode, subsequent bd commands or daemon file watcher would see a hash mismatch and trigger auto-import, which then schedules re-export, dirtying the working directory.\n\n**Root cause:**\n1. bd sync exports JSONL with NEW content (hash H1)\n2. bd sync updates jsonl_content_hash = H1 in DB\n3. bd sync restores JSONL from HEAD (OLD content, hash H0)\n4. Now: file hash = H0, DB hash = H1 (MISMATCH)\n5. Daemon or next CLI command sees mismatch, imports from OLD JSONL\n6. Import triggers re-export ā†’ file is dirty\n\n**Fix:**\nAfter restoreBeadsDirFromBranch(), update jsonl_content_hash to match the restored file's hash. This ensures daemon and CLI see file hash = DB hash ā†’ no spurious import/export cycle.\n\nRelated: bd-c83r (multiple daemon prevention)","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-13T06:42:17.130839-08:00","updated_at":"2025-12-13T06:43:33.329042-08:00","closed_at":"2025-12-13T06:43:33.329042-08:00"} +{"id":"bd-toy3","title":"Test hook","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T18:33:39.717036-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-t4sb","title":"Work on beads-d8h: Fix prefix mismatch false positive wit...","description":"Work on beads-d8h: Fix prefix mismatch false positive with multi-hyphen prefixes like 'asianops-audit-' (GH#422). When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:19.545069-08:00","updated_at":"2025-12-20T00:26:12.606657-08:00","closed_at":"2025-12-19T23:21:45.471711-08:00"} +{"id":"bd-8pyn","title":"Version Bump: 0.30.7","description":"Release checklist for version 0.30.7. This molecule ensures all release steps are completed properly.","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-19T22:56:48.648694-08:00","updated_at":"2025-12-20T00:49:51.927518-08:00","closed_at":"2025-12-20T00:25:59.529183-08:00"} +{"id":"bd-f5cc","title":"Thread Test","description":"Testing the thread feature","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:01.244501-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-f5cc","depends_on_id":"bd-x36g","type":"supersedes","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} +{"id":"bd-3sz0","title":"Auto-repair stale merge driver configs with invalid placeholders","description":"Old bd versions (\u003c0.24.0) installed merge driver with invalid placeholders %L %R instead of %A %B. Add detection to bd doctor --fix: check if git config merge.beads.driver contains %L or %R, auto-repair to 'bd merge %A %O %A %B'. One-time migration for users who initialized with old versions.","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-21T23:16:10.762808-08:00","updated_at":"2025-11-21T23:16:28.892655-08:00","dependencies":[{"issue_id":"bd-3sz0","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:10.763612-08:00","created_by":"daemon"}]} +{"id":"bd-y8tn","title":"Test Molecule","description":"A test molecule","status":"closed","priority":2,"issue_type":"molecule","created_at":"2025-12-19T18:30:24.491279-08:00","updated_at":"2025-12-19T18:31:12.49898-08:00","closed_at":"2025-12-19T18:31:12.49898-08:00"} +{"id":"bd-otf4","title":"Code Review: PR #481 - Context Engineering Optimizations","description":"Comprehensive code review of the merged context engineering PR (PR #481) that reduces MCP context usage by 80-90%.\n\n## Summary\nThe PR successfully implements lazy tool schema loading and minimal issue models to reduce context window usage. Overall implementation is solid and well-tested.\n\n## Positive Findings\nāœ… Well-designed models (IssueMinimal, CompactedResult)\nāœ… Comprehensive test coverage (28 tests, all passing)\nāœ… Clear documentation and comments\nāœ… Backward compatibility preserved (show() still returns full Issue)\nāœ… Sensible defaults (COMPACTION_THRESHOLD=20, PREVIEW_COUNT=5)\nāœ… Tool catalog complete with all 15 tools documented\n\n## Issues Identified\nSee linked issues for specific followup tasks.\n\n## Context Engineering Architecture\n- discover_tools(): List tool names only (~500 bytes vs ~15KB)\n- get_tool_info(name): Get specific tool details on-demand\n- IssueMinimal: Lightweight model for list views (~80 bytes vs ~400 bytes)\n- CompactedResult: Auto-compacts results with \u003e20 issues\n- _to_minimal(): Conversion function (efficient, no N+1 issues)","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:24:13.523532-08:00","updated_at":"2025-12-14T14:24:13.523532-08:00"} +{"id":"bd-r46","title":"Support --reason flag in daemon mode for reopen command","description":"The reopen.go command has a TODO at line 61 to add reason as a comment once RPC supports AddComment. Currently --reason flag is ignored in daemon mode with a warning.","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-21T18:55:10.773626-05:00","updated_at":"2025-11-21T18:55:10.773626-05:00"} From 9768317eea355f313925fb3d25832dcf87e0a1ca Mon Sep 17 00:00:00 2001 From: Steve Yegge Date: Sat, 20 Dec 2025 21:57:50 -0800 Subject: [PATCH 13/18] bd sync: 2025-12-20 21:57:50 --- .beads/issues.jsonl | 630 ++++++++++++++++++++++---------------------- 1 file changed, 315 insertions(+), 315 deletions(-) diff --git a/.beads/issues.jsonl b/.beads/issues.jsonl index 13a8c9df..5a69af54 100644 --- a/.beads/issues.jsonl +++ b/.beads/issues.jsonl @@ -1,318 +1,318 @@ -{"id":"bd-0d5p","title":"Fix TestRunSync_Timeout failing on macOS","description":"The hooks timeout test fails because exec.CommandContext doesn't properly terminate child processes of shell scripts on macOS. The test creates a hook that runs 'sleep 60' with a 500ms timeout, but it waits the full 60 seconds.\n\nOptions to fix:\n- Use SysProcAttr{Setpgid: true} to create process group and kill the group\n- Skip test on darwin with build tag\n- Use a different approach for timeout testing\n\nLocation: internal/hooks/hooks_test.go:220-253","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T20:52:51.771217-08:00","updated_at":"2025-12-17T23:13:40.532688-08:00","closed_at":"2025-12-17T17:23:55.678799-08:00"} -{"id":"bd-o4qy","title":"Improve CheckStaleness error handling","description":"## Problem\n\nCheckStaleness returns 'false' (not stale) for multiple error conditions instead of returning errors. This masks problems.\n\n**Location:** internal/autoimport/autoimport.go:253-285\n\n## Edge Cases That Return False\n\n1. **Invalid last_import_time format** (line 259-262)\n2. **No JSONL file found** (line 267-277) \n3. **JSONL stat fails** (line 279-282)\n\n## Fix\n\nReturn errors for abnormal conditions:\n\n```go\nlastImportTime, err := time.Parse(time.RFC3339, lastImportStr)\nif err != nil {\n return false, fmt.Errorf(\"corrupted last_import_time: %w\", err)\n}\n\nif jsonlPath == \"\" {\n return false, fmt.Errorf(\"no JSONL file found\")\n}\n\nstat, err := os.Stat(jsonlPath)\nif err != nil {\n return false, fmt.Errorf(\"cannot stat JSONL: %w\", err)\n}\n```\n\n## Impact\nMedium - edge cases are rare but should be handled\n\n## Effort \n30 minutes - requires updating callers in RPC server","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-11-20T20:17:27.606219-05:00","updated_at":"2025-12-17T23:13:40.536905-08:00","closed_at":"2025-12-17T19:11:12.965289-08:00","dependencies":[{"issue_id":"bd-o4qy","depends_on_id":"bd-2q6d","type":"blocks","created_at":"2025-11-20T20:18:26.81065-05:00","created_by":"stevey"}]} -{"id":"bd-49kw","title":"Workaround for FastMCP outputSchema bug in Claude Code","description":"The beads MCP server (v0.23.1) successfully connects to Claude Code, but all tools fail to load with a schema validation error due to a bug in FastMCP 2.13.1.\n\nError: \"Invalid literal value, expected \\\"object\\\"\" in outputSchema.\n\nRoot Cause: FastMCP generates outputSchema with $ref at root level without \"type\": \"object\" for self-referential models (Issue).\n\nWorkaround: Use slash commands (/beads:ready) or wait for FastMCP fix.\n","status":"open","priority":1,"issue_type":"bug","created_at":"2025-11-20T18:55:39.041831-05:00","updated_at":"2025-11-20T18:55:39.041831-05:00"} -{"id":"bd-b6xo","title":"Remove or fix ClearDirtyIssues() - race condition risk (bd-52)","description":"Code health review found internal/storage/sqlite/dirty.go still exposes old ClearDirtyIssues() method (lines 103-108) which clears ALL dirty issues without checking what was actually exported.\n\nData loss risk: If export fails after some issues written to JSONL but before ClearDirtyIssues called, changes to remaining dirty issues will be lost.\n\nThe safer ClearDirtyIssuesByID() (lines 113-132) exists and clears only exported issues.\n\nFix: Either remove old method or mark it deprecated and ensure no code paths use it.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T18:17:20.534625-08:00","updated_at":"2025-12-17T23:13:40.530703-08:00","closed_at":"2025-12-17T18:59:18.693791-08:00","dependencies":[{"issue_id":"bd-b6xo","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.633738-08:00","created_by":"daemon"}]} -{"id":"bd-fu83","title":"Fix daemon/direct mode inconsistency in relate and duplicate commands","description":"The relate.go and duplicate.go commands have inconsistent daemon/direct mode handling:\n\nWhen daemonClient is connected, they resolve IDs via RPC but then perform updates directly via store.UpdateIssue(), bypassing the daemon.\n\nAffected locations:\n- relate.go:125-139 (runRelate update)\n- relate.go:235-246 (runUnrelate update) \n- duplicate.go:120 (runDuplicate update)\n- duplicate.go:207 (runSupersede update)\n\nShould either use RPC for updates when daemon is running, or document why direct access is intentional.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-16T20:52:54.164189-08:00","updated_at":"2025-12-16T20:52:54.164189-08:00"} -{"id":"bd-umbf","title":"Design contributor namespace isolation for beads pollution prevention","description":"## Problem\n\nWhen contributors work on beads-the-project using beads-the-tool, their personal work-tracking issues leak into PRs. The .beads/issues.jsonl is intentionally tracked (it's the project's issue database), but contributors' local issues pollute the diff.\n\nThis is a recursion problem unique to self-hosting projects.\n\n## Possible Solutions to Explore\n\n1. **Contributor namespaces** - Each contributor gets a private prefix (e.g., `bd-steve-xxxx`) that's gitignored or filtered\n2. **Separate database** - Contributors use BEADS_DIR pointing elsewhere for personal tracking\n3. **Issue ownership/visibility flags** - Mark issues as \"local-only\" vs \"project\"\n4. **Prefix-based filtering** - Configure which prefixes are committed vs ignored\n\n## Design Considerations\n\n- Should be zero-friction for contributors (no manual setup)\n- Must not break existing workflows\n- Needs to work with sync/collaboration features\n- Consider: what if a \"personal\" issue graduates to \"project\" issue?\n\n## Expansion Needed\n\nThis is a placeholder. Needs detailed design exploration before implementation.","status":"open","priority":2,"issue_type":"feature","created_at":"2025-12-13T18:00:29.638743-08:00","updated_at":"2025-12-13T18:00:41.345673-08:00"} -{"id":"bd-kwro.4","title":"Graph Link: duplicates for deduplication","description":"Implement duplicates link type for marking issues as duplicates.\n\nNew command:\n- bd duplicate \u003cid\u003e --of \u003ccanonical\u003e - marks id as duplicate of canonical\n- Auto-closes the duplicate issue\n\nQuery support:\n- bd show \u003cid\u003e shows 'Duplicate of: \u003ccanonical\u003e'\n- bd list --duplicates shows all duplicate pairs\n\nStorage:\n- duplicates column pointing to canonical issue ID\n\nEssential for large issue databases with many similar reports.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:36.257223-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-2oo.3","title":"Update all code to use dependencies API for edges","description":"Find and update all code that reads/writes:\n- replies_to field -\u003e use dependency API\n- relates_to field -\u003e use dependency API\n- duplicate_of field -\u003e use dependency API\n- superseded_by field -\u003e use dependency API\n\nCommands affected: bd mail, bd relate, bd duplicate, bd supersede, bd show, etc.","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:01.317006-08:00","updated_at":"2025-12-18T02:49:10.59233-08:00","closed_at":"2025-12-18T02:49:10.59233-08:00","dependencies":[{"issue_id":"bd-2oo.3","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:01.31856-08:00","created_by":"daemon"}]} -{"id":"bd-rgd7","title":"Update CHANGELOG.md with release notes","description":"Add release notes for 0.32.1: MCP output control params (#667), pin field fix","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:16.031879-08:00","updated_at":"2025-12-20T21:54:07.982164-08:00","closed_at":"2025-12-20T21:54:07.982164-08:00","dependencies":[{"issue_id":"bd-rgd7","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:16.034926-08:00","created_by":"daemon"}]} -{"id":"bd-zwtq","title":"Run bd doctor at end of bd init to verify setup","description":"Run bd doctor diagnostics at end of bd init (after line 398 in init.go). If issues found, warn user immediately: 'āš  Setup incomplete. Run bd doctor --fix to complete setup.' Catches configuration problems before user encounters them in normal workflow.","status":"open","priority":1,"issue_type":"feature","created_at":"2025-11-21T23:16:09.596778-08:00","updated_at":"2025-11-21T23:16:27.781976-08:00","dependencies":[{"issue_id":"bd-zwtq","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:09.597617-08:00","created_by":"daemon"}]} -{"id":"bd-pdr2","title":"Consider backwards compatibility for ready() and list() return type change","description":"PR #481 changed the return types of `ready()` and `list()` from `list[Issue]` to `list[IssueMinimal] | CompactedResult`. This is a breaking change for MCP clients.\n\n## Impact Assessment\nBreaking change affects:\n- Any MCP client expecting `list[Issue]` from ready()\n- Any MCP client expecting `list[Issue]` from list()\n- Client code that accesses full Issue fields (description, design, acceptance_criteria, timestamps, dependencies, dependents)\n\n## Current Behavior\n- ready() returns `list[IssueMinimal] | CompactedResult`\n- list() returns `list[IssueMinimal] | CompactedResult`\n- show() still returns full `Issue` (good)\n\n## Considerations\n**Pros of current approach:**\n- Forces clients to use show() for full details (good for context efficiency)\n- Simple mental model (always use show for full data)\n- Documentation warns about this\n\n**Cons:**\n- Clients expecting list[Issue] will break\n- No graceful degradation option\n- No migration period\n\n## Potential Solutions\n1. Add optional parameter `full_details=false` to ready/list (would increase payload)\n2. Create separate tools: ready_minimal/list_minimal + ready_full/list_full\n3. Accept breaking change and document upgrade path (current approach)\n4. Version the MCP server and document migration guide\n\n## Recommendation\nCurrent approach (solution 3) is reasonable if:\n- Changelog clearly documents the breaking change\n- Migration guide provided to clients\n- Error handling is graceful for clients expecting specific fields","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:24:56.460465-08:00","updated_at":"2025-12-14T14:24:56.460465-08:00","dependencies":[{"issue_id":"bd-pdr2","depends_on_id":"bd-otf4","type":"discovered-from","created_at":"2025-12-14T14:24:56.461959-08:00","created_by":"stevey"}]} -{"id":"bd-otli","title":"Wait for CI to pass","description":"Monitor GitHub Actions - all checks must pass before release artifacts are built","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:03.022281-08:00","updated_at":"2025-12-20T00:49:51.928591-08:00","closed_at":"2025-12-20T00:25:52.635223-08:00","dependencies":[{"issue_id":"bd-otli","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.097564-08:00","created_by":"daemon"},{"issue_id":"bd-otli","depends_on_id":"bd-7tuu","type":"blocks","created_at":"2025-12-19T22:56:23.360436-08:00","created_by":"daemon"}]} -{"id":"bd-fi05","title":"bd sync fails with orphaned issues and duplicate ID conflict","description":"After fixing the deleted_at TEXT column scanning bug (commit 18b1eb2), bd sync still fails with two issues:\n\n1. Orphan Detection Warning: 12 orphaned child issues whose parents no longer exist (bd-cb64c226.* and bd-cbed9619.*)\n\n2. Import Failure: UNIQUE constraint failed for bd-360 - this tombstone exists in both DB and JSONL\n\nError: \"Import failed: error creating depth-0 issues: bulk insert issues: failed to insert issue bd-360: sqlite3: constraint failed: UNIQUE constraint failed: issues.id\"\n\nFix options:\n- Delete orphaned child issues with bd delete\n- Resolve bd-360 duplicate (in deletions.jsonl vs tombstone in DB)\n- Reset sync branch: git branch -f beads-sync main \u0026\u0026 git push --force-with-lease origin beads-sync","notes":"Fixed tombstone constraint violation bug. When deleting closed issues, the CHECK constraint (status = 'closed') = (closed_at IS NOT NULL) was violated because CreateTombstone didn't clear closed_at. Fix: set closed_at = NULL in tombstone creation SQL.\n\nThe sync data corruption (orphaned issues in beads-sync branch) requires manual cleanup: reset sync branch with 'git branch -f beads-sync main \u0026\u0026 git push --force-with-lease origin beads-sync'","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-13T07:14:33.831346-08:00","updated_at":"2025-12-13T10:50:48.545465-08:00","closed_at":"2025-12-13T07:30:33.843986-08:00"} -{"id":"bd-95k8","title":"Pinned field available in beads v0.37.0","description":"Hey max,\n\nHeads up on your mail overhaul work:\n\n1. **Pinned field is available** - beads v0.37.0 (released by dave earlier) includes the pinned field on issues. You'll want to add this to BeadsMessage in types.go.\n\n2. **Database migration** - Check if existing .beads databases need migration to support the pinned field. Run `bd doctor` to see if it flags anything.\n\n3. **Sorting task** - Once you have the pinned field, gt-ngu1 (pinned beads first in mail inbox) needs implementing. Since messages now come from `bd list --type=message`, you'll need to either:\n - Sort in listBeads() after fetching, or\n - Ensure bd list returns pinned items first (may already do this?)\n\nCheck what version of bd you're building against.\n\n-- Mayor","status":"open","priority":2,"issue_type":"message","created_at":"2025-12-20T17:51:57.315956-08:00","updated_at":"2025-12-20T17:51:57.315956-08:00"} -{"id":"bd-c83r","title":"Prevent multiple daemons from running on the same repo","description":"Multiple bd daemons running on the same repo clone causes race conditions and data corruption risks.\n\n**Problem:**\n- Nothing prevents spawning multiple daemons for the same repository\n- Multiple daemons watching the same files can conflict during sync operations\n- Observed: 4 daemons running simultaneously caused sync race condition\n\n**Solution:**\nImplement daemon singleton enforcement per repo:\n1. Use a lock file (e.g., .beads/.daemon.lock) with PID\n2. On daemon start, check if lock exists and process is alive\n3. If stale lock (dead PID), clean up and acquire lock\n4. If active daemon exists, either:\n - Exit with message 'daemon already running (PID xxx)'\n - Or offer --replace flag to kill existing and take over\n5. Release lock on graceful shutdown\n\n**Edge cases to handle:**\n- Daemon crashes without releasing lock (stale PID detection)\n- Multiple repos in same directory tree (each repo gets own lock)\n- Race between two daemons starting simultaneously (atomic lock acquisition)","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-13T06:37:23.377131-08:00","updated_at":"2025-12-16T01:14:49.50347-08:00","closed_at":"2025-12-14T17:34:14.990077-08:00"} -{"id":"bd-9cdc","title":"Update docs for import bug fix","description":"Update AGENTS.md, README.md, TROUBLESHOOTING.md with import.orphan_handling config documentation. Document resurrection behavior, tombstones, config modes. Add troubleshooting section for import failures with deleted parents.","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-04T12:32:30.770415-08:00","updated_at":"2025-11-04T12:32:30.770415-08:00"} -{"id":"bd-pbh.2","title":"Update CHANGELOG.md for 0.30.4","description":"1. Change `## [Unreleased]` to `## [0.30.4] - 2025-12-17`\n2. Add new empty `## [Unreleased]` section at top\n3. Ensure all changes since 0.30.3 are documented\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.956332-08:00","updated_at":"2025-12-17T21:46:46.214512-08:00","closed_at":"2025-12-17T21:46:46.214512-08:00","dependencies":[{"issue_id":"bd-pbh.2","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.95683-08:00","created_by":"daemon"}]} -{"id":"bd-9l0h","title":"Run tests and linting","description":"go test -short ./... \u0026\u0026 golangci-lint run ./...","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:19.527602-08:00","updated_at":"2025-12-20T21:55:29.660914-08:00","closed_at":"2025-12-20T21:55:29.660914-08:00","dependencies":[{"issue_id":"bd-9l0h","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:19.529203-08:00","created_by":"daemon"},{"issue_id":"bd-9l0h","depends_on_id":"bd-gocx","type":"blocks","created_at":"2025-12-20T21:53:29.753682-08:00","created_by":"daemon"}]} -{"id":"bd-pbh.19","title":"Install 0.30.4 MCP server locally","description":"Upgrade the MCP server (after PyPI publish):\n```bash\npip install --upgrade beads-mcp\n# OR if using uv:\nuv tool upgrade beads-mcp\n```\n\nVerify:\n```bash\npip show beads-mcp | grep Version\n```\n\n\n```verify\npip show beads-mcp 2\u003e/dev/null | grep -q 'Version: 0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.124496-08:00","updated_at":"2025-12-17T21:46:46.372989-08:00","closed_at":"2025-12-17T21:46:46.372989-08:00","dependencies":[{"issue_id":"bd-pbh.19","depends_on_id":"bd-pbh.14","type":"blocks","created_at":"2025-12-17T21:19:11.343558-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.19","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.124829-08:00","created_by":"daemon"}]} -{"id":"bd-abjw","title":"Consider consolidating config.yaml parsing into shared utility","description":"Multiple places parse config.yaml with custom structs:\n\n1. **autoimport.go:148** - `localConfig{SyncBranch}`\n2. **main.go:310** - strings.Contains for no-db (fragile, see bd-r6k2)\n3. **doctor.go:863** - strings.Contains for no-db (fragile, see bd-r6k2)\n4. **internal/config/config.go** - Uses viper (but caches at startup, problematic for tests)\n\nConsider creating a shared utility in `internal/configfile/` or extending the viper config:\n\n```go\n// internal/configfile/yaml.go\ntype YAMLConfig struct {\n SyncBranch string `yaml:\"sync-branch\"`\n NoDb bool `yaml:\"no-db\"`\n IssuePrefix string `yaml:\"issue-prefix\"`\n Author string `yaml:\"author\"`\n}\n\nfunc LoadYAML(beadsDir string) (*YAMLConfig, error) {\n // Parse config.yaml with proper YAML library\n}\n```\n\nBenefits:\n- Single source of truth for config.yaml structure\n- Proper YAML parsing everywhere\n- Easier to add new config fields\n\nTrade-off: May add complexity for simple one-off reads.","status":"open","priority":4,"issue_type":"task","created_at":"2025-12-07T02:03:26.067311-08:00","updated_at":"2025-12-07T02:03:26.067311-08:00"} -{"id":"bd-kwro.1","title":"Schema: Add message type and new fields","description":"Add to internal/storage/sqlite/schema.go and models:\n\nNew issue_type value:\n- message\n\nNew optional fields on Issue struct:\n- Sender string (who sent this)\n- Ephemeral bool (can be bulk-deleted)\n- RepliesTo string (issue ID for threading)\n- RelatesTo []string (issue IDs for knowledge graph)\n- Duplicates string (canonical issue ID)\n- SupersededBy string (replacement issue ID)\n\nUpdate:\n- internal/storage/sqlite/schema.go - add columns\n- internal/models/issue.go - add fields to struct\n- internal/storage/sqlite/sqlite.go - CRUD operations\n- Create migration from v0.30.1\n\nEnsure backward compatibility - all new fields optional.","status":"tombstone","issue_type":"task","created_at":"2025-12-16T03:01:19.777604-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-pbh.12","title":"Push commit and tag to origin","description":"```bash\ngit push origin main\ngit push origin v0.30.4\n```\n\nThis triggers GitHub Actions:\n- GoReleaser build\n- PyPI publish\n- npm publish\n\n\n```verify\ngit ls-remote origin refs/tags/v0.30.4 | grep -q 'v0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.066074-08:00","updated_at":"2025-12-17T21:46:46.301948-08:00","closed_at":"2025-12-17T21:46:46.301948-08:00","dependencies":[{"issue_id":"bd-pbh.12","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.066442-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.12","depends_on_id":"bd-pbh.11","type":"blocks","created_at":"2025-12-17T21:19:11.265986-08:00","created_by":"daemon"}]} -{"id":"bd-aec5439f","title":"Update LINTING.md with current baseline","description":"After cleanup, document the remaining acceptable baseline in LINTING.md so we can track regression.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-27T18:53:10.38679-07:00","updated_at":"2025-12-17T22:58:34.564854-08:00","closed_at":"2025-12-17T22:58:34.564854-08:00"} -{"id":"bd-077e","title":"Add close_reason field to CLI schema and documentation","description":"PR #551 persists close_reason, but the CLI documentation may not mention this field as part of the issue schema.\n\n## Current State\n- close_reason is now persisted in database\n- `bd show --json` will return close_reason in JSON output\n- Documentation may not reflect this new field\n\n## What's Missing\n- CLI reference documentation for close_reason field\n- Schema documentation showing close_reason is a top-level issue field\n- Example output showing close_reason in bd show --json\n- bd close command documentation should mention close_reason parameter is optional\n\n## Suggested Action\n1. Update README.md or CLI reference docs to list close_reason as an issue field\n2. Add example to bd close documentation\n3. Update any type definitions or schema specs\n4. Consider adding close_reason to verbose list output (bd list --verbose)","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-14T14:25:28.448654-08:00","updated_at":"2025-12-14T14:25:28.448654-08:00","dependencies":[{"issue_id":"bd-077e","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:28.449968-08:00","created_by":"stevey"}]} -{"id":"bd-6pc","title":"Implement bd pin/unpin commands","description":"Add 'bd pin \u003cid\u003e' and 'bd unpin \u003cid\u003e' commands to toggle the pinned status of issues. Should support multiple IDs like other bd commands.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:28.292937-08:00","updated_at":"2025-12-19T17:43:35.713398-08:00","closed_at":"2025-12-19T00:35:31.612589-08:00","dependencies":[{"issue_id":"bd-6pc","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.119852-08:00","created_by":"daemon"},{"issue_id":"bd-6pc","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.352848-08:00","created_by":"daemon"}]} -{"id":"bd-5b6e","title":"Add tests for helper functions (GetDirtyIssueHash, GetAllDependencyRecords, export hashes)","description":"Several utility functions have 0% coverage:\n- GetDirtyIssueHash (dirty.go)\n- GetAllDependencyRecords (dependencies.go)\n- GetExportHash, SetExportHash, ClearAllExportHashes (hash.go)\n\nThese are lower priority but should have basic coverage.","status":"open","priority":4,"issue_type":"task","created_at":"2025-11-01T22:40:58.989976-07:00","updated_at":"2025-11-01T22:40:58.989976-07:00"} -{"id":"bd-3ggb","title":"Rebuild local binary","description":"Build and verify: go build -o bd ./cmd/bd \u0026\u0026 ./bd version","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:03.101428-08:00","updated_at":"2025-12-18T22:46:40.955673-08:00","closed_at":"2025-12-18T22:46:40.955673-08:00","dependencies":[{"issue_id":"bd-3ggb","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.748289-08:00","created_by":"daemon"},{"issue_id":"bd-3ggb","depends_on_id":"bd-4y4g","type":"blocks","created_at":"2025-12-18T22:43:20.950376-08:00","created_by":"daemon"}]} -{"id":"bd-c3u","title":"Review PR #512: clarify bd ready docs","description":"Review and merge PR #512 from aspiers. This PR clarifies what bd ready does after git pull in README.md. Simple 1-line change. URL: https://github.com/anthropics/beads/pull/512","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:15:13.405161+11:00","updated_at":"2025-12-13T07:07:29.641265-08:00","closed_at":"2025-12-13T07:07:29.641265-08:00"} -{"id":"bd-aydr.4","title":"Implement CLI command (cmd/bd/reset.go)","description":"Wire up the reset command with Cobra CLI.\n\n## Responsibilities\n- Define command and all flags\n- User confirmation prompt (unless --force)\n- Display impact summary before confirmation\n- Colored output and progress indicators\n- Call core reset package\n- Handle errors with user-friendly messages\n- Register command with rootCmd in init()\n\n## Flags\n```go\n--hard bool \"Also remove from git and commit\"\n--force bool \"Skip confirmation prompt\"\n--backup bool \"Create backup before reset\"\n--dry-run bool \"Preview what would happen\"\n--skip-init bool \"Do not re-initialize after reset\"\n--verbose bool \"Show detailed progress output\"\n```\n\n## Output Format\n```\nāš ļø This will reset beads to a clean state.\n\nWill be deleted:\n ā€¢ 47 issues (23 open, 24 closed)\n ā€¢ 12 tombstones\n\nContinue? [y/N] y\n\nā†’ Stopping daemons... āœ“\nā†’ Removing .beads/... āœ“\nā†’ Initializing fresh... āœ“\n\nāœ“ Reset complete. Run 'bd onboard' to set up hooks.\n```\n\n## Implementation Notes\n- Confirmation logic lives HERE, not in core package\n- Use color package (github.com/fatih/color) for output\n- Follow patterns from other commands (init.go, doctor.go)\n- Add to rootCmd in init() function\n\n## File Location\n`cmd/bd/reset.go`","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:54.318854+11:00","updated_at":"2025-12-13T10:13:32.611434+11:00","closed_at":"2025-12-13T09:59:41.72638+11:00","dependencies":[{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr.2","type":"blocks","created_at":"2025-12-13T08:45:09.817854+11:00","created_by":"daemon"},{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr.3","type":"blocks","created_at":"2025-12-13T08:45:09.883658+11:00","created_by":"daemon"},{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:54.319237+11:00","created_by":"daemon"},{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr.1","type":"blocks","created_at":"2025-12-13T08:45:09.762138+11:00","created_by":"daemon"}]} -{"id":"bd-pbh.10","title":"Run check-versions.sh - all must pass","description":"Run the version consistency check:\n```bash\n./scripts/check-versions.sh\n```\n\nAll versions must match 0.30.4.\n\n\n```verify\n./scripts/check-versions.sh\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.047311-08:00","updated_at":"2025-12-17T21:46:46.28316-08:00","closed_at":"2025-12-17T21:46:46.28316-08:00","dependencies":[{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.047888-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.1","type":"blocks","created_at":"2025-12-17T21:19:11.159084-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.4","type":"blocks","created_at":"2025-12-17T21:19:11.168248-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.5","type":"blocks","created_at":"2025-12-17T21:19:11.177869-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.6","type":"blocks","created_at":"2025-12-17T21:19:11.187629-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.7","type":"blocks","created_at":"2025-12-17T21:19:11.199955-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.8","type":"blocks","created_at":"2025-12-17T21:19:11.211479-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.9","type":"blocks","created_at":"2025-12-17T21:19:11.224059-08:00","created_by":"daemon"}]} -{"id":"bd-pbh.18","title":"Restart beads daemon","description":"Kill any running daemons so they pick up the new version:\n```bash\nbd daemons killall\n```\n\nStart fresh daemon:\n```bash\nbd list # triggers daemon start\n```\n\nVerify daemon version:\n```bash\nbd version --daemon\n```\n\n\n```verify\nbd version --daemon 2\u003e\u00261 | grep -q '0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.11636-08:00","updated_at":"2025-12-17T21:46:46.364842-08:00","closed_at":"2025-12-17T21:46:46.364842-08:00","dependencies":[{"issue_id":"bd-pbh.18","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.116706-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.18","depends_on_id":"bd-pbh.17","type":"blocks","created_at":"2025-12-17T21:19:11.330411-08:00","created_by":"daemon"}]} -{"id":"bd-cbed9619.2","title":"Implement content-first idempotent import","description":"**Summary:** Refactored issue import to be content-first and idempotent, ensuring consistent data synchronization across multiple import rounds by prioritizing content hash matching over ID-based updates.\n\n**Key Decisions:** \n- Implement content hash as primary matching mechanism\n- Create global collision resolution algorithm\n- Ensure importing same data multiple times results in no-op\n\n**Resolution:** The new import strategy guarantees predictable convergence across distributed systems, solving rename detection and collision handling while maintaining data integrity during multi-stage imports.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:38:25.671302-07:00","updated_at":"2025-12-17T23:18:29.112032-08:00","dependencies":[{"issue_id":"bd-cbed9619.2","depends_on_id":"bd-cbed9619.5","type":"blocks","created_at":"2025-10-28T18:39:28.360026-07:00","created_by":"daemon"},{"issue_id":"bd-cbed9619.2","depends_on_id":"bd-cbed9619.4","type":"blocks","created_at":"2025-10-28T18:39:28.383624-07:00","created_by":"daemon"},{"issue_id":"bd-cbed9619.2","depends_on_id":"bd-cbed9619.3","type":"blocks","created_at":"2025-10-28T18:39:28.407157-07:00","created_by":"daemon"}],"deleted_at":"2025-12-17T23:18:29.112032-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-9usz","title":"Test suite hangs/never finishes","description":"Running 'go test ./... -count=1' hangs indefinitely. The full test suite never completes, making it difficult to verify changes. Need to investigate which tests are hanging and fix or add timeouts.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-16T21:56:27.80191-08:00","updated_at":"2025-12-16T21:56:27.80191-08:00"} -{"id":"bd-mql4","title":"getLocalSyncBranch silently ignores YAML parse errors","description":"In autoimport.go:170-172, YAML parsing errors are silently ignored. If a user has malformed YAML in config.yaml, sync-branch will just silently be empty with no feedback.\n\nRecommendation: Add debug logging since this function is only called during auto-import, and debugging silent failures is painful.\n\nAdd: debug.Logf(\"Warning: failed to parse config.yaml: %v\", err)","status":"open","priority":4,"issue_type":"task","created_at":"2025-12-07T02:03:44.217728-08:00","updated_at":"2025-12-07T02:03:44.217728-08:00"} -{"id":"bd-pbh.1","title":"Update cmd/bd/version.go to 0.30.4","description":"Update the Version constant in cmd/bd/version.go:\n```go\nVersion = \"0.30.4\"\n```\n\n\n```verify\ngrep -q 'Version = \"0.30.4\"' cmd/bd/version.go\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.9462-08:00","updated_at":"2025-12-17T21:46:46.20387-08:00","closed_at":"2025-12-17T21:46:46.20387-08:00","dependencies":[{"issue_id":"bd-pbh.1","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.946633-08:00","created_by":"daemon"}]} -{"id":"bd-aydr.5","title":"Enhance bd doctor to suggest reset for broken states","description":"Update bd doctor to detect severely broken states and suggest reset.\n\n## Detection Criteria\nSuggest reset when:\n- Multiple unfixable errors detected\n- Corrupted JSONL that can't be repaired\n- Schema version mismatch that can't be migrated\n- Daemon state inconsistent and unkillable\n\n## Implementation\nAdd to doctor's check/fix flow:\n```go\nif unfixableErrors \u003e threshold {\n suggest('State may be too broken to fix. Consider: bd reset')\n}\n```\n\n## Output Example\n```\nāœ— Found 5 unfixable errors\n \n Your beads state may be too corrupted to repair.\n Consider running 'bd reset' to start fresh.\n (Use 'bd reset --backup' to save current state first)\n```\n\n## Notes\n- Don't auto-run reset, just suggest\n- This is lower priority, can be done in parallel with main work","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-13T08:44:55.591986+11:00","updated_at":"2025-12-13T06:24:29.561624-08:00","closed_at":"2025-12-13T10:17:23.4522+11:00","dependencies":[{"issue_id":"bd-aydr.5","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:55.59239+11:00","created_by":"daemon"}]} -{"id":"bd-lsv4","title":"GH#444: Fix inconsistent status naming in_progress vs in-progress","description":"Documentation uses in-progress (hyphen) but code expects in_progress (underscore). Update all docs to use canonical in_progress. See GitHub issue #444.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:14.349425-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-r6a.5","title":"Update documentation for template system","description":"Update AGENTS.md and help text to document the new template system:\n\n- How to create a template (epic + template label + child issues)\n- How to define variables (just use {{name}} placeholders)\n- How to instantiate (bd template instantiate)\n- Migration from YAML workflows (if any users had custom ones)","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-17T22:43:55.461345-08:00","updated_at":"2025-12-18T17:42:26.001474-08:00","closed_at":"2025-12-18T13:46:53.446262-08:00","dependencies":[{"issue_id":"bd-r6a.5","depends_on_id":"bd-r6a.4","type":"blocks","created_at":"2025-12-17T22:44:03.788517-08:00","created_by":"daemon"},{"issue_id":"bd-r6a.5","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:55.461763-08:00","created_by":"daemon"},{"issue_id":"bd-r6a.5","depends_on_id":"bd-r6a.3","type":"blocks","created_at":"2025-12-17T22:44:03.632404-08:00","created_by":"daemon"}]} -{"id":"bd-lo4","title":"Test pinned issue","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-18T21:44:49.031385-08:00","updated_at":"2025-12-18T21:47:25.055109-08:00","deleted_at":"2025-12-18T21:47:25.055109-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-gxq","title":"Simplify bd onboard to minimal AGENTS.md snippet pointing to bd prime","description":"## Context\nGH#604 raised concerns about bd onboard bloating AGENTS.md with ~100+ lines of static instructions that:\n- Load every session whether beads is being used or not\n- Get stale when bd upgrades\n- Waste tokens\n\n## Solution\nSimplify `bd onboard` to output a minimal snippet (~2 lines) that points to `bd prime`:\n\n```markdown\n## Issue Tracking\nThis project uses beads (`bd`) for issue tracking.\nRun `bd prime` for workflow context, or hooks auto-inject it.\n```\n\n## Rationale\n- `bd prime` is dynamic, concise (~80 lines), and always matches installed bd version\n- Hooks already auto-inject `bd prime` at session start when .beads/ detected\n- AGENTS.md only needs to mention beads exists, not contain full instructions\n\n## Implementation\n1. Update `cmd/bd/onboard.go` to output minimal snippet\n2. Keep `--output` flag for BD_GUIDE.md generation (may still be useful)\n3. Update help text to explain the new approach","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T11:42:38.604891-08:00","updated_at":"2025-12-18T11:47:28.020419-08:00","closed_at":"2025-12-18T11:47:28.020419-08:00"} -{"id":"bd-6s61","title":"Version Bump: {{version}}","description":"Release checklist for version {{version}}. This molecule ensures all release steps are completed properly.","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-19T22:55:42.487701-08:00","updated_at":"2025-12-20T17:59:26.261233-08:00","closed_at":"2025-12-20T01:18:47.905306-08:00"} -{"id":"bd-lfak","title":"bd preflight: PR readiness checks for contributors","description":"## Vision\n\nEncode project-specific institutional knowledge into executable checks. CONTRIBUTING.md is documentation that's read once and forgotten; `bd preflight` is documentation that runs at exactly the right moment.\n\n## Problem Statement\n\nContributors face a \"last mile\" problem - they do the work but stumble on project-specific gotchas at PR time:\n- Nix vendorHash gets stale when go.sum changes\n- Beads artifacts leak into PRs (see bd-umbf for namespace solution)\n- Version mismatches between version.go and default.nix\n- Tests/lint not run locally before pushing\n- Other project-specific checks that only surface when CI fails\n\nThese are too obscure to remember, exist in docs nobody reads end-to-end, and waste CI round-trips.\n\n## Why beads?\n\nBeads already has a foothold in the contributor workflow. It knows:\n- Git state (staged files, branch, dirty status)\n- Project structure\n- The specific issue being worked on\n- Project-specific configuration\n\n## Proposed Interface\n\n### Tier 1: Checklist Mode (v1)\n\n $ bd preflight\n PR Readiness Checklist:\n\n [ ] Tests pass: go test -short ./...\n [ ] Lint passes: golangci-lint run ./...\n [ ] No beads pollution: check .beads/issues.jsonl diff\n [ ] Nix hash current: go.sum unchanged or vendorHash updated\n [ ] Version sync: version.go matches default.nix\n\n Run 'bd preflight --check' to validate automatically.\n\n### Tier 2: Check Mode (v2)\n\n $ bd preflight --check\n āœ“ Tests pass\n āœ“ Lint passes\n āš  Beads pollution: 3 issues in diff - are these project issues or personal?\n āœ— Nix hash stale: go.sum changed, vendorHash needs update\n Fix: sha256-KRR6dXzsSw8OmEHGBEVDBOoIgfoZ2p0541T9ayjGHlI=\n āœ“ Version sync\n\n 1 error, 1 warning. Run 'bd preflight --fix' to auto-fix where possible.\n\n### Tier 3: Fix Mode (v3)\n\n $ bd preflight --fix\n āœ“ Updated vendorHash in default.nix\n āš  Cannot auto-fix beads pollution - manual review needed\n\n## Checks to Implement\n\n| Check | Description | Auto-fixable |\n|-------|-------------|--------------|\n| tests | Run go test -short ./... | No |\n| lint | Run golangci-lint | Partial (gofmt) |\n| beads-pollution | Detect personal issues in diff | No (see bd-umbf) |\n| nix-hash | Detect stale vendorHash | Yes (if nix available) |\n| version-sync | version.go matches default.nix | Yes |\n| no-debug | No TODO/FIXME/console.log | Warn only |\n| clean-stage | No unintended files staged | Warn only |\n\n## Future: Configuration\n\nMake checks configurable per-project via .beads/preflight.yaml:\n\n preflight:\n checks:\n - name: tests\n run: go test -short ./...\n required: true\n - name: no-secrets\n pattern: \"**/*.env\"\n staged: deny\n - name: custom-check\n run: ./scripts/validate.sh\n\nThis lets any project using beads define their own preflight checks.\n\n## Implementation Phases\n\n### Phase 1: Static Checklist\n- Implement bd preflight with hardcoded checklist for beads\n- No execution, just prints what to check\n- Update CONTRIBUTING.md to reference it\n\n### Phase 2: Automated Checks\n- Implement bd preflight --check\n- Run tests, lint, detect stale hashes\n- Clear pass/fail/warn output\n\n### Phase 3: Auto-fix\n- Implement bd preflight --fix\n- Fix vendorHash, version sync\n- Integrate with bd-umbf solution for pollution\n\n### Phase 4: Configuration\n- .beads/preflight.yaml support\n- Make it useful for other projects using beads\n- Plugin/hook system for custom checks\n\n## Dependencies\n\n- bd-umbf: Namespace isolation for beads pollution (blocking for full solution)\n\n## Success Metrics\n\n- Fewer CI failures on first PR push\n- Reduced \"fix nix hash\" commits\n- Contributors report preflight caught issues before CI","status":"open","priority":2,"issue_type":"epic","created_at":"2025-12-13T18:01:39.587078-08:00","updated_at":"2025-12-13T18:01:39.587078-08:00","dependencies":[{"issue_id":"bd-lfak","depends_on_id":"bd-umbf","type":"blocks","created_at":"2025-12-13T18:01:46.059901-08:00","created_by":"daemon"}]} -{"id":"bd-cils","title":"Work on beads-2nh: Fix gt spawn --issue to find issues in...","description":"Work on beads-2nh: Fix gt spawn --issue to find issues in rig's beads database. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:47.573854-08:00","updated_at":"2025-12-20T00:49:51.927884-08:00","closed_at":"2025-12-19T23:28:28.605343-08:00"} -{"id":"bd-aydr.9","title":"Add .beads-backup-* pattern to gitignore template","description":"Update the gitignore template in doctor package to include backup directories.\n\n## Change\nAdd `.beads-backup-*/` to the GitignoreTemplate in `cmd/bd/doctor/gitignore.go`\n\n## Why\nBackup directories created by `bd reset --backup` should not be committed to git.\nThey are local-only recovery tools.\n\n## File\n`cmd/bd/doctor/gitignore.go` - look for GitignoreTemplate constant","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-13T08:49:42.453483+11:00","updated_at":"2025-12-13T09:16:44.201889+11:00","closed_at":"2025-12-13T09:16:44.201889+11:00","dependencies":[{"issue_id":"bd-aydr.9","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:49:42.453886+11:00","created_by":"daemon"}]} -{"id":"bd-uqfn","title":"Work on beads-wkt: Output control parameters for MCP tool...","description":"Work on beads-wkt: Output control parameters for MCP tools (GH#622). Add brief, fields, max_description_length params to ready/list/show. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:57:10.675535-08:00","updated_at":"2025-12-20T00:49:51.929271-08:00","closed_at":"2025-12-19T23:28:25.362931-08:00"} -{"id":"bd-9g1z","title":"Fix or remove TestFindJSONLPathDefault (issue #356)","description":"Code health review found .test-skip permanently skips TestFindJSONLPathDefault.\n\nThe test references issue #356 about wrong JSONL filename expectations (issues.jsonl vs beads.jsonl).\n\nTest file: internal/beads/beads_test.go\n\nThe underlying migration from beads.jsonl to issues.jsonl may be complete, so either:\n1. Fix the test expectations\n2. Remove the test if no longer needed\n3. Document why it remains skipped","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-16T18:17:31.33975-08:00","updated_at":"2025-12-16T18:17:31.33975-08:00","dependencies":[{"issue_id":"bd-9g1z","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.169617-08:00","created_by":"daemon"}]} -{"id":"bd-rgyd","title":"Split internal/storage/sqlite/queries.go (1586 lines)","description":"Code health review found queries.go is too large at 1586 lines with:\n\n- Issue scanning logic duplicated between transaction.go and queries.go\n- Timestamp defensive fixes duplicated in CreateIssue, CreateIssues, batch_ops.go\n- Multiple similar patterns that should be consolidated\n\nAlso: transaction.go at 1284 lines, dependencies.go at 893 lines\n\nRecommendation:\n1. Extract common scanning into shared function\n2. Consolidate timestamp defensive fixes\n3. Split queries.go by domain (CRUD, search, batch, events)","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-16T18:17:23.85869-08:00","updated_at":"2025-12-16T18:17:23.85869-08:00","dependencies":[{"issue_id":"bd-rgyd","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.062038-08:00","created_by":"daemon"}]} -{"id":"bd-au0.6","title":"Add comprehensive filters to bd export","description":"Enhance bd export with filtering options for selective exports.\n\n**Currently only has:**\n- --status\n\n**Add filters:**\n- --label, --label-any\n- --assignee\n- --type\n- --priority, --priority-min, --priority-max\n- --created-after, --created-before\n- --updated-after, --updated-before\n\n**Use case:**\n- Export only open issues: bd export --status open\n- Export high-priority bugs: bd export --type bug --priority-max 1\n- Export recent issues: bd export --created-after 2025-01-01\n\n**Files to modify:**\n- cmd/bd/export.go\n- Reuse filter logic from list.go","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-21T21:07:19.431307-05:00","updated_at":"2025-11-21T21:07:19.431307-05:00","dependencies":[{"issue_id":"bd-au0.6","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:19.432983-05:00","created_by":"daemon"}]} -{"id":"bd-pbh.3","title":"Add 0.30.4 to info.go release notes","description":"Update cmd/bd/info.go versionChanges map with release notes for 0.30.4.\nInclude any workflow-impacting changes for --whats-new output.\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.966781-08:00","updated_at":"2025-12-17T21:46:46.222445-08:00","closed_at":"2025-12-17T21:46:46.222445-08:00","dependencies":[{"issue_id":"bd-pbh.3","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.967287-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.3","depends_on_id":"bd-pbh.2","type":"blocks","created_at":"2025-12-17T21:19:11.149584-08:00","created_by":"daemon"}]} -{"id":"bd-y8bj","title":"Auto-detect identity from directory context for bd mail","description":"Currently bd mail inbox defaults to git user name, requiring --identity flag with exact format.\n\n## Problem\n- Mail sent to `gastown/crew/max`\n- Max runs `bd mail inbox` ā†’ defaults to 'Steve Yegge' (git user)\n- Max must know to use `--identity 'gastown/crew/max'` with exact slashes\n\n## Proposed Fix\nAuto-detect identity from directory context when in a Gas Town workspace:\n- In `/Users/stevey/gt/gastown/crew/max`, infer identity = `gastown/crew/max`\n- Pattern: `\u003ctown\u003e/\u003crig\u003e/\u003crole\u003e/\u003cname\u003e` ā†’ `\u003crig\u003e/\u003crole\u003e/\u003cname\u003e`\n\n## Additional Improvements\n1. Support GT_IDENTITY env var (set by gt crew at / session spawning)\n2. Support identity in .beads/config.yaml\n3. Normalize format: accept both slashes and dashes as equivalent\n\n## Context\nDiscovered during crew-to-crew work assignment. Max couldn't see mail despite correct nudge because identity defaulted wrong.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-20T17:22:53.938586-08:00","updated_at":"2025-12-20T18:12:58.472262-08:00","closed_at":"2025-12-20T17:58:51.034201-08:00"} -{"id":"bd-nuh1","title":"GH#403: bd doctor --fix circular error message","description":"bd doctor --fix suggests running bd doctor --fix for deletions manifest issue. Fix to provide actual resolution. See GitHub issue #403.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:16.290018-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-u0g9","title":"GH#405: Prefix parsing with hyphens treats first segment as prefix","description":"Prefix me-py-toolkit gets parsed as just me- when detecting mismatches. Fix prefix parsing to handle multi-hyphen prefixes. See GitHub issue #405.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:18.354066-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-0fvq","title":"bd doctor should recommend bd prime migration for existing repos","description":"bd doctor should detect old beads integration patterns and recommend migrating to bd prime approach.\n\n## Current behavior\n- bd doctor checks if Claude hooks are installed globally\n- Doesn't check project-level integration (AGENTS.md, CLAUDE.md)\n- Doesn't recommend migration for repos using old patterns\n\n## Desired behavior\nbd doctor should detect and suggest:\n\n1. **Old slash command pattern detected**\n - Check for /beads:* references in AGENTS.md, CLAUDE.md\n - Suggest: These slash commands are deprecated, use bd prime hooks instead\n \n2. **No agent documentation**\n - Check if AGENTS.md or CLAUDE.md exists\n - Suggest: Run 'bd onboard' or 'bd setup claude' to document workflow\n \n3. **Old MCP-only pattern**\n - Check for instructions to use MCP tools but no bd prime hooks\n - Suggest: Add bd prime hooks for better token efficiency\n\n4. **Migration path**\n - Show: 'Run bd setup claude to add SessionStart/PreCompact hooks'\n - Show: 'Update AGENTS.md to reference bd prime instead of slash commands'\n\n## Example output\n\nāš  Warning: Old beads integration detected in CLAUDE.md\n Found: /beads:* slash command references (deprecated)\n Recommend: Migrate to bd prime hooks for better token efficiency\n Fix: Run 'bd setup claude' and update CLAUDE.md\n\nšŸ’” Tip: bd prime + hooks reduces token usage by 80-99% vs slash commands\n MCP mode: ~50 tokens vs ~10.5k for full MCP scan\n CLI mode: ~1-2k tokens with automatic context recovery\n\n## Benefits\n- Helps existing repos adopt new best practices\n- Clear migration path for users\n- Better token efficiency messaging","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-12T03:20:25.567748-08:00","updated_at":"2025-11-12T03:20:25.567748-08:00"} -{"id":"bd-si4g","title":"Verify release artifacts","description":"Check GitHub releases page - binaries for darwin/linux/windows should be available","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:04.183029-08:00","updated_at":"2025-12-20T00:49:51.92894-08:00","closed_at":"2025-12-20T00:25:52.720816-08:00","dependencies":[{"issue_id":"bd-si4g","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.173619-08:00","created_by":"daemon"},{"issue_id":"bd-si4g","depends_on_id":"bd-otli","type":"blocks","created_at":"2025-12-19T22:56:23.428507-08:00","created_by":"daemon"}]} -{"id":"bd-qqc.11","title":"Update go install bd to {{version}}","description":"Rebuild and install bd to ~/go/bin:\n\n```bash\ngo install ./cmd/bd\n~/go/bin/bd version # Verify shows {{version}}\n```\n\nNote: If ~/go/bin is in PATH before /opt/homebrew/bin, this is the version that runs by default.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:07:55.838013-08:00","updated_at":"2025-12-18T23:09:05.775582-08:00","closed_at":"2025-12-18T23:09:05.775582-08:00","dependencies":[{"issue_id":"bd-qqc.11","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T23:07:55.838432-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.11","depends_on_id":"bd-qqc.10","type":"blocks","created_at":"2025-12-18T23:08:19.629947-08:00","created_by":"daemon"}]} -{"id":"bd-jvu","title":"Add bd update --parent flag to change issue parent","description":"Allow changing an issue's parent with bd update --parent \u003cnew-parent-id\u003e. Useful for reorganizing tasks under different epics or moving issues between hierarchies. Should update the parent-child dependency relationship.","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-17T22:24:07.274485-08:00","updated_at":"2025-12-17T22:34:07.318938-08:00","closed_at":"2025-12-17T22:34:07.318938-08:00"} -{"id":"bd-fx7v","title":"Improve test coverage for cmd/bd/doctor/fix (23.9% ā†’ 50%)","description":"The doctor/fix package has only 23.9% test coverage. The doctor fix functionality is important for troubleshooting.\n\nCurrent coverage: 23.9%\nTarget coverage: 50%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:05.67127-08:00","updated_at":"2025-12-13T21:01:20.839298-08:00"} -{"id":"bd-411u","title":"Document BEADS_DIR pattern for multi-agent workspaces (Gas Town)","description":"Gas Town and similar multi-agent systems need to configure separate beads databases per workspace/rig, distinct from any project-level beads.\n\n## Use Case\n\nIn Gas Town:\n- Each 'rig' (managed project) has multiple agents (polecats, refinery, witness)\n- All agents in a rig should share a single beads database at the rig level\n- This should be separate from any .beads/ the project itself uses\n- The BEADS_DIR env var enables this\n\n## Documentation Needed\n\n1. Add a section to docs explaining BEADS_DIR for multi-agent setups\n2. Example: setting BEADS_DIR in agent startup scripts/hooks\n3. Clarify interaction with project-level .beads/ (BEADS_DIR takes precedence)\n\n## Current Support\n\nAlready implemented in internal/beads/beads.go:FindDatabasePath():\n- BEADS_DIR env var is checked first (preferred)\n- BEADS_DB env var still supported (deprecated)\n- Falls back to .beads/ search in tree\n\nJust needs documentation for the multi-agent workspace pattern.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-15T22:08:22.158027-08:00","updated_at":"2025-12-15T22:08:22.158027-08:00"} -{"id":"bd-dqu8","title":"Restart running daemons","description":"Kill and restart any running bd daemons to pick up new version: pkill -f 'bd daemon' \u0026\u0026 bd daemon --start","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T00:32:26.559311-08:00","updated_at":"2025-12-20T00:32:59.123766-08:00","closed_at":"2025-12-20T00:32:59.123766-08:00","dependencies":[{"issue_id":"bd-dqu8","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-20T00:32:39.36213-08:00","created_by":"daemon"},{"issue_id":"bd-dqu8","depends_on_id":"bd-fgw3","type":"blocks","created_at":"2025-12-20T00:32:39.427846-08:00","created_by":"daemon"}]} -{"id":"bd-siz1","title":"GH#532: bd sync circular error (suggests running bd sync)","description":"bd sync error message recommends running bd sync to fix the bd sync error. Fix error handling to provide useful guidance. See GitHub issue #532.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:04:00.543573-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-g9eu","title":"Investigate TestRoutingIntegration failure","description":"TestRoutingIntegration/maintainer_with_SSH_remote failed during pre-commit check with \"expected role maintainer, got contributor\".\nThis occurred while running `go test -short ./...` on darwin/arm64.\nThe failure appears unrelated to storage/sqlite changes.\nNeed to investigate if this is a flaky test or environmental issue.","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-20T15:55:19.337094-08:00","updated_at":"2025-11-20T15:55:19.337094-08:00"} -{"id":"bd-pbh.6","title":"Update integrations/beads-mcp/pyproject.toml to 0.30.4","description":"Update version in pyproject.toml:\n```toml\nversion = \"0.30.4\"\n```\n\n\n```verify\ngrep -q 'version = \"0.30.4\"' integrations/beads-mcp/pyproject.toml\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.994004-08:00","updated_at":"2025-12-17T21:46:46.246574-08:00","closed_at":"2025-12-17T21:46:46.246574-08:00","dependencies":[{"issue_id":"bd-pbh.6","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.994376-08:00","created_by":"daemon"}]} -{"id":"bd-qqc.3","title":"Update CHANGELOG.md for {{version}}","description":"In CHANGELOG.md:\n\n1. Change `## [Unreleased]` section header to `## [{{version}}] - {{date}}`\n2. Add new empty `## [Unreleased]` section above it\n3. Review and clean up the changes list\n\nFormat:\n```markdown\n## [Unreleased]\n\n## [{{version}}] - {{date}}\n\n### Added\n- ...\n\n### Changed\n- ...\n\n### Fixed\n- ...\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:39.738561-08:00","updated_at":"2025-12-18T23:34:18.629213-08:00","closed_at":"2025-12-18T22:41:41.846609-08:00","dependencies":[{"issue_id":"bd-qqc.3","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:39.739138-08:00","created_by":"stevey"}]} -{"id":"bd-usro","title":"Rename 'template instantiate' to 'mol bond'","description":"Rename the template instantiation command to match molecule metaphor.\n\nCurrent: bd template instantiate \u003cid\u003e --var key=value\nTarget: bd mol bond \u003cid\u003e --var key=value\n\nChanges needed:\n- Add 'mol' command group (or extend existing)\n- Add 'bond' subcommand that wraps template instantiate logic\n- Keep 'template instantiate' as deprecated alias for backward compat\n- Update help text and docs to use molecule terminology\n\nThe 'bond' verb captures:\n1. Chemistry metaphor (molecules bond to form structures)\n2. Dependency linking (child issues bonded in a DAG)\n3. Short and active\n\nSee also: molecule execution model in Gas Town","status":"open","priority":1,"issue_type":"feature","created_at":"2025-12-20T16:56:37.582795-08:00","updated_at":"2025-12-20T16:56:37.582795-08:00"} -{"id":"bd-0a43","title":"Split monolithic sqlite.go into focused files","description":"internal/storage/sqlite/sqlite.go is 1050 lines containing initialization, 20+ CRUD methods, query building, and schema management.\n\nSplit into:\n- store.go: Store struct \u0026 initialization (150 lines)\n- bead_queries.go: Bead CRUD (300 lines)\n- work_queries.go: Work queries (200 lines) \n- stats_queries.go: Statistics (150 lines)\n- schema.go: Schema \u0026 migrations (150 lines)\n- helpers.go: Common utilities (100 lines)\n\nImpact: Impossible to understand at a glance; hard to find specific functionality; high cognitive load\n\nEffort: 6-8 hours","status":"closed","issue_type":"task","created_at":"2025-11-16T14:51:16.520465-08:00","updated_at":"2025-12-17T23:13:40.533947-08:00","closed_at":"2025-12-17T16:51:30.236012-08:00"} -{"id":"bd-vs9","title":"Fix unparam unused parameter in cmd/bd/doctor.go:541","description":"Linting issue: checkHooksQuick - path is unused (unparam) at cmd/bd/doctor.go:541:22. Error: func checkHooksQuick(path string) string {","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:17.02177046-07:00","updated_at":"2025-12-17T23:13:40.535743-08:00","closed_at":"2025-12-17T16:46:11.028332-08:00"} -{"id":"bd-4qfb","title":"Improve bd doctor output formatting for better readability","description":"The current bd doctor output is a wall of text that's hard to process. Consider improvements like:\n- Grouping related checks into collapsible sections\n- Using color/bold for section headers\n- Showing only failures/warnings by default with --verbose for full output\n- Better visual hierarchy between major sections\n- Summary line at top (e.g., '24 checks passed, 0 warnings, 0 errors')","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T09:29:27.557578+11:00","updated_at":"2025-12-13T09:29:27.557578+11:00"} -{"id":"bd-7bbc4e6a","title":"Add MCP server functions for repair commands","description":"**Summary:** Added MCP server repair functions for agent dependency management, system validation, and pollution detection. Implemented across BdClientBase, BdCliClient, and daemon clients to enhance system diagnostics and self-healing capabilities.\n\n**Key Decisions:** \n- Expose repair_deps(), detect_pollution(), validate() via MCP server\n- Create abstract method stubs with fallback to CLI execution\n- Use @mcp.tool decorators for function registration\n\n**Resolution:** Successfully implemented comprehensive repair command infrastructure, enabling more robust system health monitoring and automated remediation with full CLI and daemon support.","notes":"Implemented all three MCP server functions:\n\n1. **repair_deps(fix=False)** - Find/fix orphaned dependencies\n2. **detect_pollution(clean=False)** - Detect/clean test issues \n3. **validate(checks=None, fix_all=False)** - Run comprehensive health checks\n\nChanges:\n- Added abstract methods to BdClientBase\n- Implemented in BdCliClient (CLI execution)\n- Added NotImplementedError stubs in BdDaemonClient (falls back to CLI)\n- Created wrapper functions in tools.py\n- Registered @mcp.tool decorators in server.py\n\nAll commands tested and working with --no-daemon flag.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-28T19:37:55.72639-07:00","updated_at":"2025-12-16T01:08:11.983953-08:00","closed_at":"2025-11-07T19:38:12.152437-08:00"} -{"id":"bd-4ri","title":"Fix TestFallbackToDirectModeEnablesFlush deadlock causing 10min test timeout","description":"## Problem\n\nTestFallbackToDirectModeEnablesFlush in direct_mode_test.go deadlocks for 9m59s before timing out, causing the entire test suite to take 10+ minutes instead of \u003c10 seconds.\n\n## Root Cause\n\nDatabase lock contention between test cleanup and flushToJSONL():\n- Test cleanup (line 36) tries to close DB via defer\n- flushToJSONL() (line 132) is still accessing DB\n- Results in deadlock: database/sql.(*DB).Close() waits for mutex while GetJSONLFileHash() holds it\n\n## Stack Trace Evidence\n\n```\ngoroutine 512 [sync.Mutex.Lock, 9 minutes]:\ndatabase/sql.(*DB).Close(0x14000643790)\n .../database/sql/sql.go:927 +0x84\ngithub.com/steveyegge/beads/cmd/bd.TestFallbackToDirectModeEnablesFlush.func1()\n .../direct_mode_test.go:36 +0xf4\n\nWhile goroutine running flushToJSONL() holds DB connection via GetJSONLFileHash()\n```\n\n## Impact\n\n- Test suite: 10+ minutes ā†’ should be \u003c10 seconds\n- ALL other tests pass in ~4 seconds\n- This ONE test accounts for 99.9% of test runtime\n\n## Related\n\nThis is the EXACT same issue documented in MAIN_TEST_REFACTOR_NOTES.md for why main_test.go refactoring was deferred - global state manipulation + DB cleanup = deadlock.\n\n## Fix Approaches\n\n1. **Add proper cleanup sequencing** - stop flush goroutines BEFORE closing DB\n2. **Use test-specific DB lifecycle** - ensure flush completes before cleanup\n3. **Mock the flush mechanism** - avoid real DB for testing this code path \n4. **Add explicit timeout handling** - fail fast with clear error instead of hanging\n\n## Files\n\n- cmd/bd/direct_mode_test.go:36-132\n- cmd/bd/autoflush.go:353 (validateJSONLIntegrity)\n- cmd/bd/autoflush.go:508 (flushToJSONLWithState)\n\n## Acceptance\n\n- Test passes without timeout\n- Test suite completes in \u003c10 seconds\n- No deadlock between cleanup and flush operations","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-21T20:09:00.794372-05:00","updated_at":"2025-12-17T23:13:40.533279-08:00","closed_at":"2025-12-17T17:25:07.626617-08:00"} -{"id":"bd-401h","title":"Work on beads-7jl: Fix Windows installer file locking iss...","description":"Work on beads-7jl: Fix Windows installer file locking issue (GH#652). Close file handle before extraction in postinstall.js. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:57.873767-08:00","updated_at":"2025-12-19T23:20:05.747664-08:00","closed_at":"2025-12-19T23:20:05.747664-08:00"} -{"id":"bd-tj00","title":"Update local installation","description":"go build -o ~/.local/bin/bd ./cmd/bd \u0026\u0026 codesign -s - ~/.local/bin/bd","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:20.616907-08:00","updated_at":"2025-12-20T21:55:42.756171-08:00","closed_at":"2025-12-20T21:55:42.756171-08:00","dependencies":[{"issue_id":"bd-tj00","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:20.619834-08:00","created_by":"daemon"},{"issue_id":"bd-tj00","depends_on_id":"bd-9l0h","type":"blocks","created_at":"2025-12-20T21:53:29.817989-08:00","created_by":"daemon"}]} -{"id":"bd-aydr.2","title":"Implement backup functionality for reset","description":"Add backup capability that can be used by reset command.\n\n## Functionality\n- Copy .beads/ to .beads-backup-{timestamp}/\n- Timestamp format: YYYYMMDD-HHMMSS\n- Preserve file permissions\n- Return backup path for user feedback\n\n## Location\n`internal/reset/backup.go` - keep with reset package for now (YAGNI)\n\n## Interface\n```go\nfunc CreateBackup(beadsDir string) (backupPath string, err error)\n```\n\n## Notes\n- Simple recursive file copy, no compression needed\n- Error if backup dir already exists (unlikely with timestamp)\n- Backup directories SHOULD be gitignored\n- Add `.beads-backup-*/` pattern to .beads/.gitignore template in doctor package\n- Consider: ListBackups() for future `bd backup list` command (not for this PR)","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:51.306103+11:00","updated_at":"2025-12-13T10:13:32.610819+11:00","closed_at":"2025-12-13T09:20:20.590488+11:00","dependencies":[{"issue_id":"bd-aydr.2","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:51.306474+11:00","created_by":"daemon"}]} -{"id":"bd-6sm6","title":"Improve test coverage for internal/export (37.1% ā†’ 60%)","description":"The export package has only 37.1% test coverage. Export functionality needs good coverage to ensure data integrity.\n\nCurrent coverage: 37.1%\nTarget coverage: 60%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:06.802277-08:00","updated_at":"2025-12-13T21:01:19.08088-08:00"} -{"id":"bd-qqc.8","title":"Create and push git tag v{{version}}","description":"Create the release tag and push it:\n\n```bash\ngit tag v{{version}}\ngit push origin v{{version}}\n```\n\nThis triggers the GoReleaser GitHub Action to build release binaries.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:34.659927-08:00","updated_at":"2025-12-18T22:47:14.054232-08:00","closed_at":"2025-12-18T22:47:14.054232-08:00","dependencies":[{"issue_id":"bd-qqc.8","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:34.660248-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.8","depends_on_id":"bd-vgi5","type":"blocks","created_at":"2025-12-18T22:43:21.209529-08:00","created_by":"daemon"}]} -{"id":"bd-ork0","title":"Add comments to 30+ silently ignored errors or fix them","description":"Code health review found 30+ instances of error suppression using blank identifier without explanation:\n\nGood examples (with comments):\n- merge.go: _ = gitRmCmd.Run() // Ignore errors\n- daemon_watcher.go: _ = watcher.Add(...) // Ignore error\n\nBad examples (no context):\n- create.go:213: dbPrefix, _ = store.GetConfig(ctx, \"issue_prefix\")\n- daemon_sync_branch.go: _ = daemonClient.Close()\n- migrate_hash_ids.go, version_tracking.go: _ = store.Close()\n\nFix: Add comments explaining WHY errors are ignored, or handle them properly.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:25.899372-08:00","updated_at":"2025-12-16T18:17:25.899372-08:00","dependencies":[{"issue_id":"bd-ork0","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.275843-08:00","created_by":"daemon"}]} -{"id":"bd-pzw7","title":"gt handoff deadlock at handoff.go:125","notes":"When running 'gt handoff -m \"message\"' after successful MR submit, go panics with 'fatal error: all goroutines are asleep - deadlock\\!' at handoff.go:125. The shutdown request still appears to be sent successfully but the command crashes. Stack trace shows issue is in runHandoff select statement.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-19T23:22:12.46315-08:00","updated_at":"2025-12-19T23:22:18.613883-08:00"} -{"id":"bd-77gm","title":"Import reports misleading '0 created, 0 updated' when actually importing all issues","description":"When running 'bd import' on a fresh database (no existing issues), the command reports 'Import complete: 0 created, 0 updated' even though it successfully imported all issues from the JSONL file.\n\n**Steps to reproduce:**\n1. Delete .beads/beads.db\n2. Run: bd import .beads/issues.jsonl\n3. Observe output: 'Import complete: 0 created, 0 updated'\n4. Run: bd list\n5. Confirm: All issues are actually present in the database\n\n**Expected behavior:**\nReport the actual number of issues imported, e.g., 'Import complete: 523 created, 0 updated'\n\n**Actual behavior:**\n'Import complete: 0 created, 0 updated' (misleading - makes user think import failed)\n\n**Impact:**\n- Users think import failed when it succeeded\n- Confusing during database sync operations (e.g., after git pull)\n- Makes debugging harder (can't tell if import actually worked)\n\n**Context:**\nDiscovered during VC session when syncing database after git pull. The misleading message caused confusion about whether the database was properly synced with the canonical JSONL file.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-11-09T16:20:13.191156-08:00","updated_at":"2025-11-09T16:20:13.191156-08:00"} -{"id":"bd-6rl","title":"Merge3Way public API does not expose TTL parameter","description":"The public Merge3Way() function in merge.go does not allow callers to configure the tombstone TTL. It hard-codes the default via merge3WayWithTTL(). While merge3WayWithTTL() exists, it is unexported (lowercase). This means the CLI and tests cannot configure TTL at merge time. Use cases: testing with different TTL values, per-repository TTL configuration, debugging with short TTL, supporting --ttl flag in bd merge command (mentioned in design doc bd-zvg). Recommendation: Export Merge3WayWithTTL (rename to uppercase). Files: internal/merge/merge.go:77, 292-298","status":"open","priority":3,"issue_type":"feature","created_at":"2025-12-05T16:36:15.756814-08:00","updated_at":"2025-12-05T16:36:15.756814-08:00"} -{"id":"bd-qqc.4","title":"Run tests and verify build","description":"Run the test suite to verify nothing is broken:\n\n```bash\n./scripts/test.sh\n```\n\nOr manually:\n```bash\ngo build ./cmd/bd/...\ngo test ./...\n```\n\nFix any failures before proceeding.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:52.308314-08:00","updated_at":"2025-12-18T23:34:18.631671-08:00","closed_at":"2025-12-18T22:41:41.856318-08:00","dependencies":[{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc.1","type":"blocks","created_at":"2025-12-18T13:00:40.62142-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc.2","type":"blocks","created_at":"2025-12-18T13:00:45.820132-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc.3","type":"blocks","created_at":"2025-12-18T13:00:51.014568-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:52.308943-08:00","created_by":"stevey"}]} -{"id":"bd-o9o","title":"Exclude pinned issues from bd ready","description":"Update bd ready to exclude pinned issues. Pinned issues are context markers, not work items, and should never appear in the ready-to-work list.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:41.979073-08:00","updated_at":"2025-12-18T23:33:41.979073-08:00","dependencies":[{"issue_id":"bd-o9o","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.392931-08:00","created_by":"daemon"},{"issue_id":"bd-o9o","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.612655-08:00","created_by":"daemon"}]} -{"id":"bd-581b80b3","title":"bd find-duplicates - AI-powered duplicate detection","description":"Find semantically duplicate issues.\n\nApproaches:\n1. Mechanical: Exact title/description matching\n2. Embeddings: Cosine similarity (cheap, scalable)\n3. AI: LLM-based semantic comparison (expensive, accurate)\n\nUses embeddings by default for \u003e100 issues.\n\nFiles: cmd/bd/find_duplicates.go (new)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-10-29T20:49:49.126801-07:00","updated_at":"2025-12-17T22:58:34.563511-08:00","closed_at":"2025-12-17T22:58:34.563511-08:00"} -{"id":"bd-j3il","title":"Add bd reset command for clean slate restart","description":"Implement a command to reset beads to a clean starting state.\n\n**Context:** GitHub issue #479 - users sometimes get beads into an invalid state after updates, and there's no clean way to start fresh. The git backup/restore mechanism that protects against accidental deletion also makes it hard to intentionally reset.\n\n**Current workaround** (from maphew):\n```bash\nbd daemons killall\ngit rm .beads/*.jsonl\ngit commit -m 'remove old issues'\nrm .beads/*\nbd init\nbd onboard\n```\n\n**Desired:** A proper `bd reset` command that handles this cleanly and safely.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-13T08:41:34.956552+11:00","updated_at":"2025-12-13T08:43:49.970591+11:00","closed_at":"2025-12-13T08:43:49.970591+11:00"} -{"id":"bd-kwro.7","title":"Identity Configuration","description":"Implement identity system for sender field.\n\nConfiguration sources (in priority order):\n1. --identity flag on commands\n2. BEADS_IDENTITY environment variable\n3. .beads/config.json: {\"identity\": \"worker-name\"}\n4. Default: git user.name or hostname\n\nNew config file support:\n- .beads/config.json for per-repo settings\n- identity field for messaging\n\nHelper function:\n- GetIdentity() string - resolves identity from sources\n\nUpdate bd mail send to use GetIdentity() for sender field.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:02:17.603608-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-hnkg","title":"GH#540: Add silent quick-capture mode (bd q)","description":"Add bd q alias for quick capture that outputs only issue ID. Useful for piping/scripting. See GitHub issue #540.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:03:38.260135-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} -{"id":"bd-kwro.6","title":"Mail Commands: bd mail send/inbox/read/ack","description":"Implement core mail commands in cmd/bd/mail.go\n\nCommands:\n- bd mail send \u003crecipient\u003e -s 'Subject' -m 'Body' [--urgent]\n - Creates issue with type=message, sender=identity, assignee=recipient\n - --urgent sets priority=0\n \n- bd mail inbox [--from \u003csender\u003e] [--priority \u003cn\u003e]\n - Lists open messages where assignee=my identity\n - Sorted by priority, then date\n \n- bd mail read \u003cid\u003e\n - Shows full message content (subject, body, sender, timestamp)\n - Does NOT close (separate from ack)\n \n- bd mail ack \u003cid\u003e\n - Marks message as read by closing it\n - Can ack multiple: bd mail ack \u003cid1\u003e \u003cid2\u003e ...\n\nRequires: Identity configuration (bd-kwro.7)","status":"tombstone","issue_type":"task","created_at":"2025-12-16T03:02:12.103755-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-47tn","title":"Add bd daemon --stop-all command to kill all daemon processes","description":"Currently there's no easy way to stop all running bd daemon processes. Users must resort to pkill -f 'bd daemon' or similar shell commands.\n\nAdd a --stop-all flag to bd daemon that:\n1. Finds all running bd daemon processes (not just the current repo's daemon)\n2. Gracefully stops them all\n3. Reports how many were stopped\n\nThis is useful when:\n- Multiple daemons are running and causing race conditions\n- User wants a clean slate before running bd sync\n- Debugging daemon-related issues","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-13T06:34:45.080633-08:00","updated_at":"2025-12-16T01:14:49.501989-08:00","closed_at":"2025-12-14T17:33:03.057089-08:00"} -{"id":"bd-fa2h","title":"šŸ¤ HANDOFF: v0.31.0 released, molecules discussion","description":"Session completed 0.31.0 release and had important molecules discussion.\n\n## Completed\n- v0.31.0 released (deferred status, audit trail, directory labels, etc.)\n- Fixed lint issues, hook version markers, codesigning\n- All CI green, artifacts verified\n\n## Filed Issues\n- bd-usro: Rename template instantiate ā†’ bd mol bond\n- bd-y8bj: Auto-detect identity for bd mail (P1 bug)\n- gt-975: Molecule execution support for polecats/crew\n- gt-976: Crew lifecycle support in Deacon\n\n## Key Insight\nMolecules are the future - TodoWrite is ephemeral, molecules are persistent institutional memory on the world chain. I tried to use TodoWrite for version bump and missed steps (codesigning, MCP verification). Molecules would have caught this.\n\n## Next Steps\n- bd mol bond implementation is priority\n- Max has gt-976 for crew lifecycle (enables automated refresh mid-molecule)\n\nCheck bd ready and gt-975/976 status.","status":"open","priority":2,"issue_type":"message","created_at":"2025-12-20T17:23:09.889562-08:00","updated_at":"2025-12-20T17:23:09.889562-08:00"} -{"id":"bd-cbed9619.4","title":"Make DetectCollisions read-only (separate detection from modification)","description":"**Summary:** The project restructured the collision detection process in the database to separate read-only detection from state modification, eliminating race conditions and improving system reliability. This was achieved by introducing a two-phase approach: first detecting potential collisions, then applying resolution separately.\n\n**Key Decisions:**\n- Create read-only DetectCollisions method\n- Add RenameDetail to track potential issue renames\n- Implement atomic ApplyCollisionResolution function\n- Separate detection logic from database modification\n\n**Resolution:** The refactoring creates a more robust, composable collision handling mechanism that prevents partial failures and maintains database consistency during complex issue import scenarios.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:37:09.652326-07:00","updated_at":"2025-12-17T23:18:29.112637-08:00","dependencies":[{"issue_id":"bd-cbed9619.4","depends_on_id":"bd-cbed9619.5","type":"blocks","created_at":"2025-10-28T18:39:28.285653-07:00","created_by":"daemon"}],"deleted_at":"2025-12-17T23:18:29.112637-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-a0cp","title":"Consider using types.Status in merge package for type safety","description":"The merge package uses string for status comparison (e.g., result.Status == closed, issue.Status == StatusTombstone). The types package defines Status as a type alias with validation. While the merge package needs its own Issue struct for JSONL flexibility, it could import and use types.Status for constants to get compile-time type checking. Current code: if left == closed || right == closed. Could be: if left == string(types.StatusClosed). This is low priority since string comparison works correctly. Files: internal/merge/merge.go:44, 488, 501-521","status":"open","priority":4,"issue_type":"task","created_at":"2025-12-05T16:37:10.690424-08:00","updated_at":"2025-12-05T16:37:10.690424-08:00"} -{"id":"bd-u0sb","title":"Merge: bd-uqfn","description":"branch: polecat/cheedo\ntarget: main\nsource_issue: bd-uqfn\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-20T01:11:52.033964-08:00","updated_at":"2025-12-20T01:11:52.033964-08:00"} -{"id":"bd-x3hi","title":"Support redirect files in .beads/ directory","description":"Gas Town creates polecat worktrees with .beads/redirect files that point to a shared beads database. The bd CLI should:\n\n1. When finding a .beads/ directory, check if it contains a 'redirect' file\n2. If redirect exists, read the relative path and use that as the beads directory\n3. This allows multiple git worktrees to share a single beads database\n\nExample:\n- polecats/alpha/.beads/redirect contains '../../mayor/rig/.beads'\n- bd commands from alpha should use mayor/rig/.beads\n\nCurrently bd ignores redirect files and either uses the local .beads/ or walks up to find a parent .beads/.\n\nRelated: gt-nriy (test message that can't be retrieved due to missing redirect support)","status":"open","priority":1,"issue_type":"feature","created_at":"2025-12-20T21:46:23.415172-08:00","updated_at":"2025-12-20T21:46:23.415172-08:00"} -{"id":"bd-qqc.7","title":"Push release v{{version}} to remote","description":"Push the commit and tag:\n\n```bash\ngit push \u0026\u0026 git push --tags\n```\n\nVerify on GitHub that the tag appears in releases.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T13:00:26.933082-08:00","updated_at":"2025-12-18T23:34:18.630538-08:00","closed_at":"2025-12-18T22:41:41.882956-08:00","dependencies":[{"issue_id":"bd-qqc.7","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T13:00:26.933687-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.7","depends_on_id":"bd-qqc.6","type":"blocks","created_at":"2025-12-18T13:01:12.711161-08:00","created_by":"stevey"}]} -{"id":"bd-t4u1","title":"False positive detection by Kaspersky Antivirus (Trojan)","description":"Kaspersky Antivirus falsely detects beads (bd.exe v0.23.1) as a Trojan (PDM:Trojan.Win32.Generic) and removes it.\nEvent: Malicious object detected\nComponent: System Watcher\nObject name: bd.exe\n","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-20T18:56:12.498187-05:00","updated_at":"2025-11-20T18:56:12.498187-05:00"} {"id":"bd-89f89fc0","title":"Remove unreachable RPC methods","description":"Several RPC server and client methods are unreachable and should be removed:\n\nServer methods (internal/rpc/server.go):\n- `Server.GetLastImportTime` (line 2116)\n- `Server.SetLastImportTime` (line 2123)\n- `Server.findJSONLPath` (line 2255)\n\nClient methods (internal/rpc/client.go):\n- `Client.Import` (line 311) - RPC import not used (daemon uses autoimport)\n\nEvidence:\n```bash\ngo run golang.org/x/tools/cmd/deadcode@latest -test ./...\n```\n\nImpact: Removes ~80 LOC of unused RPC code","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-28T16:20:02.432202-07:00","updated_at":"2025-12-17T22:58:34.564401-08:00","closed_at":"2025-12-17T22:58:34.564401-08:00"} -{"id":"bd-eyto","title":"Time-dependent tests may be flaky near TTL boundary","description":"Several tombstone merge tests use time.Now() to create test data: time.Now().Add(-24 * time.Hour), time.Now().Add(-60 * 24 * time.Hour), etc. While these work reliably in practice (24h vs 30d TTL has large margin), they could theoretically be flaky if: 1) Tests run slowly, 2) System clock changes during test, 3) TTL constants change. Recommendation: Consider using a fixed reference time or time injection for deterministic tests. Lower priority since current margin is large. Files: internal/merge/merge_test.go:1337-1338, 1352-1353, 1548-1549, 1590-1591","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-05T16:37:02.348143-08:00","updated_at":"2025-12-05T16:37:02.348143-08:00"} -{"id":"bd-2oo.1","title":"Add metadata and thread_id columns to dependencies table","description":"Schema changes:\n- ALTER TABLE dependencies ADD COLUMN metadata TEXT DEFAULT '{}'\n- ALTER TABLE dependencies ADD COLUMN thread_id TEXT DEFAULT ''\n- CREATE INDEX idx_dependencies_thread ON dependencies(thread_id) WHERE thread_id != ''","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:00.468223-08:00","updated_at":"2025-12-18T02:49:10.575133-08:00","closed_at":"2025-12-18T02:49:10.575133-08:00","dependencies":[{"issue_id":"bd-2oo.1","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:00.470012-08:00","created_by":"daemon"}]} -{"id":"bd-au0.7","title":"Audit and standardize JSON output across all commands","description":"Ensure consistent JSON format and error handling when --json flag is used.\n\n**Scope:**\n1. Verify all commands respect --json flag\n2. Standardize success response format\n3. Standardize error response format\n4. Document JSON schemas\n\n**Commands to audit:**\n- Core CRUD: create, update, delete, show, list, search āœ“\n- Queries: ready, blocked, stale, count, stats, status\n- Deps: dep add/remove/tree/cycles\n- Labels: label commands\n- Comments: comments add/list/delete\n- Epics: epic status/close-eligible\n- Export/import: already support --json āœ“\n\n**Testing:**\n- Success cases return valid JSON\n- Error cases return valid JSON (not plain text)\n- Consistent field naming (snake_case vs camelCase)\n- Array vs object wrapping consistency","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-21T21:07:35.304424-05:00","updated_at":"2025-11-21T21:07:35.304424-05:00","dependencies":[{"issue_id":"bd-au0.7","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:35.305663-05:00","created_by":"daemon"}]} -{"id":"bd-tm2p","title":"Polecats get stuck on interactive shell prompts (cp/mv/rm -i)","description":"During swarm operations, polecats frequently get stuck waiting for interactive prompts from shell commands like:\n- cp prompting 'overwrite file? (y/n)'\n- mv prompting 'overwrite file? (y/n)' \n- rm prompting 'remove file?'\n\nThis happens because macOS aliases or shell configs may have -i flags set by default.\n\nRoot cause: Claude Code runs commands that trigger interactive confirmation prompts, but cannot respond to them, causing the agent to hang indefinitely.\n\nObserved in: Multiple polecats during GH issues swarm (Dec 2024)\n- Derrick, Roustabout, Prospector, Warboy all got stuck on y/n prompts\n\nSuggested fixes:\n1. AGENTS.md should instruct agents to always use -f flag with cp/mv/rm\n2. Polecat startup could set shell aliases to use non-interactive versions\n3. bd prime hook could include guidance about non-interactive commands\n4. Consider detecting stuck prompts and auto-recovering","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-14T16:51:24.572271-08:00","updated_at":"2025-12-17T23:13:40.536312-08:00","closed_at":"2025-12-17T19:13:04.074424-08:00"} -{"id":"bd-746","title":"Fix resolvePartialID stub in workflow.go","description":"The resolvePartialID function at workflow.go:921-925 is a stub that just returns the ID unchanged. Should use utils.ResolvePartialID for proper partial ID resolution in direct mode (non-daemon).","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-17T22:22:57.586917-08:00","updated_at":"2025-12-17T22:34:07.270168-08:00","closed_at":"2025-12-17T22:34:07.270168-08:00"} -{"id":"bd-4nqq","title":"Remove dead test code in info_test.go","description":"Code health review found cmd/bd/info_test.go has two tests permanently skipped:\n\n- TestInfoCommand\n- TestInfoCommandNoDaemon\n\nBoth skip with: 'Manual test - bd info command is working, see manual testing'\n\nThese are essentially dead code. Either automate them or remove them entirely.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:27.554019-08:00","updated_at":"2025-12-16T18:17:27.554019-08:00","dependencies":[{"issue_id":"bd-4nqq","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.381694-08:00","created_by":"daemon"}]} -{"id":"bd-2oo.4","title":"Create migration script for edge field to dependency conversion","description":"Migration must:\n1. Read existing JSONL with old fields\n2. Convert field values to dependency records\n3. Write updated JSONL without old fields\n4. Handle edge cases (missing refs, duplicates)\n\nRun via: bd migrate or automatic on bd prime","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:01.760277-08:00","updated_at":"2025-12-18T02:49:10.602446-08:00","closed_at":"2025-12-18T02:49:10.602446-08:00","dependencies":[{"issue_id":"bd-2oo.4","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:01.760694-08:00","created_by":"daemon"}]} -{"id":"bd-14ie","title":"Work on beads-2vn: Add simple built-in beads viewer (GH#6...","description":"Work on beads-2vn: Add simple built-in beads viewer (GH#654). Add bd list --pretty with --watch flag, tree view with priority/status symbols. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:47.305831-08:00","updated_at":"2025-12-20T00:26:12.605897-08:00","closed_at":"2025-12-19T23:23:13.928323-08:00"} -{"id":"bd-indn","title":"bd template commands fail with daemon mode","description":"The `bd template show` and `bd template instantiate` commands fail with 'Error loading template: no database connection' when daemon is running.\n\n**Reproduction:**\n```bash\nbd daemon --start\nbd template show bd-qqc # Error: no database connection\nbd template show bd-qqc --no-daemon # Works\n```\n\n**Expected:** Template commands should work with daemon like other commands.\n\n**Workaround:** Use `--no-daemon` flag.\n\n**Location:** Likely in cmd/bd/template.go - daemon RPC path not implemented for template operations.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-18T22:57:35.16596-08:00","updated_at":"2025-12-18T22:57:35.16596-08:00"} -{"id":"bd-pbh.11","title":"Commit changes and create v0.30.4 tag","description":"```bash\ngit add -A\ngit commit -m \"chore: Bump version to 0.30.4\"\ngit tag -a v0.30.4 -m \"Release v0.30.4\"\n```\n\n\n```verify\ngit describe --tags --exact-match HEAD 2\u003e/dev/null | grep -q 'v0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.056575-08:00","updated_at":"2025-12-17T21:46:46.292166-08:00","closed_at":"2025-12-17T21:46:46.292166-08:00","dependencies":[{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh.10","type":"blocks","created_at":"2025-12-17T21:19:11.234175-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh.2","type":"blocks","created_at":"2025-12-17T21:19:11.245316-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh.3","type":"blocks","created_at":"2025-12-17T21:19:11.255362-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.056934-08:00","created_by":"daemon"}]} -{"id":"bd-vpan","title":"Re: Thread Test 2","description":"Got your message. Testing reply feature.","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:29.144352-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-vpan","depends_on_id":"bd-x36g","type":"replies-to","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} -{"id":"bd-hvng","title":"Merge: bd-w193","description":"branch: polecat/nux\ntarget: main\nsource_issue: bd-w193\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:23:47.496139-08:00","updated_at":"2025-12-19T23:23:47.496139-08:00"} -{"id":"bd-74w1","title":"Consolidate duplicate path-finding utilities (findJSONLPath, findBeadsDir, findGitRoot)","description":"Code health review found these functions defined in multiple places:\n\n- findJSONLPath() in autoflush.go:45-73 and doctor/fix/migrate.go\n- findBeadsDir() in autoimport.go:197-239 (with git worktree handling)\n- findGitRoot() in autoimport.go:242-269 (Windows path conversion)\n\nThe beads package has public FindBeadsDir() and FindJSONLPath() APIs that should be used consistently.\n\nImpact: Bug fixes need to be applied in multiple places. Git worktree handling may not be replicated everywhere.\n\nFix: Consolidate all implementations to use the beads package APIs. Remove duplicates.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-16T18:17:16.694293-08:00","updated_at":"2025-12-16T18:17:16.694293-08:00","dependencies":[{"issue_id":"bd-74w1","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.526122-08:00","created_by":"daemon"}]} -{"id":"bd-sh4c","title":"Improve test coverage for cmd/bd/setup (28.4% ā†’ 50%)","description":"The setup package has only 28.4% test coverage. Setup commands are critical for first-time user experience.\n\nCurrent coverage: 28.4%\nTarget coverage: 50%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:04.409346-08:00","updated_at":"2025-12-13T21:01:18.98833-08:00"} -{"id":"bd-hy9p","title":"Add --body-file flag to bd create for reading descriptions from files","description":"## Problem\n\nCreating issues with long/complex descriptions via CLI requires shell escaping gymnastics:\n\n```bash\n# Current workaround - awkward heredoc quoting\nbd create --title=\"...\" --description=\"$(cat \u003c\u003c'EOF'\n...markdown...\nEOF\n)\"\n\n# Often fails with quote escaping errors in eval context\n# Agents resort to writing temp files then reading them\n```\n\n## Proposed Solution\n\nAdd `--body-file` and `--description-file` flags to read description from a file, matching `gh` CLI pattern.\n\n```bash\n# Natural pattern that aligns with training data\ncat \u003e /tmp/desc.md \u003c\u003c 'EOF'\n...markdown content...\nEOF\n\nbd create --title=\"...\" --body-file=/tmp/desc.md\n```\n\n## Implementation\n\n### 1. Add new flags to `bd create`\n\n```go\ncreateCmd.Flags().String(\"body-file\", \"\", \"Read description from file (use - for stdin)\")\ncreateCmd.Flags().String(\"description-file\", \"\", \"Alias for --body-file\")\n```\n\n### 2. Flag precedence\n\n- If `--body-file` or `--description-file` is provided, read from file\n- If value is `-`, read from stdin\n- Otherwise fall back to `--body` or `--description` flag\n- If neither provided, description is empty (current behavior)\n\n### 3. Error handling\n\n- File doesn't exist ā†’ clear error message\n- File not readable ā†’ clear error message\n- stdin specified but not available ā†’ clear error message\n\n## Benefits\n\nāœ… **Matches training data**: `gh issue create --body-file file.txt` is a common pattern\nāœ… **No shell escaping issues**: File content is read directly\nāœ… **Works with any content**: Markdown, special characters, quotes, etc.\nāœ… **Agent-friendly**: Agents already write complex content to temp files\nāœ… **User-friendly**: Easier for humans too when pasting long descriptions\n\n## Related Commands\n\nConsider adding similar support to:\n- `bd update --body-file` (for updating descriptions)\n- `bd comment --body-file` (if/when we add comments)\n\n## Examples\n\n```bash\n# From file\nbd create --title=\"Add new feature\" --body-file=feature.md\n\n# From stdin\necho \"Quick description\" | bd create --title=\"Bug fix\" --body-file=-\n\n# With other flags\nbd create \\\n --title=\"Security issue\" \\\n --type=bug \\\n --priority=0 \\\n --body-file=security-report.md \\\n --label=security\n```\n\n## Testing\n\n- Test with normal files\n- Test with stdin (`-`)\n- Test with non-existent files (error handling)\n- Test with binary files (should handle gracefully)\n- Test with empty files (valid - empty description)\n- Test that `--description-file` and `--body-file` are equivalent aliases","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-11-22T00:02:08.762684-08:00","updated_at":"2025-12-17T23:13:40.536024-08:00","closed_at":"2025-12-17T17:28:52.505239-08:00"} -{"id":"bd-pbh.5","title":"Update .claude-plugin/marketplace.json to 0.30.4","description":"Update version field in .claude-plugin/marketplace.json:\n```json\n\"version\": \"0.30.4\"\n```\n\n\n```verify\njq -e '.plugins[0].version == \"0.30.4\"' .claude-plugin/marketplace.json\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.985619-08:00","updated_at":"2025-12-17T21:46:46.239122-08:00","closed_at":"2025-12-17T21:46:46.239122-08:00","dependencies":[{"issue_id":"bd-pbh.5","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.985942-08:00","created_by":"daemon"}]} -{"id":"bd-6fe4622f","title":"Remove unreachable utility functions","description":"Several small utility functions are unreachable:\n\nFiles to clean:\n1. `internal/storage/sqlite/hash.go` - `computeIssueContentHash` (line 17)\n - Check if entire file can be deleted if only contains this function\n\n2. `internal/config/config.go` - `FileUsed` (line 151)\n - Delete unused config helper\n\n3. `cmd/bd/git_sync_test.go` - `verifyIssueOpen` (line 300)\n - Delete dead test helper\n\n4. `internal/compact/haiku.go` - `HaikuClient.SummarizeTier2` (line 81)\n - Tier 2 summarization not implemented\n - Options: implement feature OR delete method\n\nImpact: Removes 50-100 LOC depending on decisions","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-28T16:20:02.434573-07:00","updated_at":"2025-12-17T22:58:34.563993-08:00","closed_at":"2025-12-17T22:58:34.563993-08:00"} -{"id":"bd-nl2","title":"No logging/debugging for tombstone resurrection events","description":"Per the design document bd-zvg Open Question 1: Should resurrection log a warning? Recommendation was Yes. Currently, when an expired tombstone loses to a live issue (resurrection), there is no logging or debugging output. This makes it hard to understand why an issue reappeared. Recommendation: Add optional debug logging when resurrection occurs, e.g., Issue bd-abc resurrected (tombstone expired). Files: internal/merge/merge.go:359-366, 371-378, 400-405, 410-415","status":"open","priority":4,"issue_type":"feature","created_at":"2025-12-05T16:36:52.27525-08:00","updated_at":"2025-12-05T16:36:52.27525-08:00"} -{"id":"bd-au0.5","title":"Add date and priority filters to bd search","description":"Add filter parity with bd list for consistent querying.\n\n**Missing filters to add:**\n- --priority, --priority-min, --priority-max\n- --created-after, --created-before\n- --updated-after, --updated-before\n- --closed-after, --closed-before\n- --empty-description, --no-assignee, --no-labels\n- --desc-contains, --notes-contains\n\n**Files to modify:**\n- cmd/bd/search.go\n- internal/rpc/protocol.go (SearchArgs)\n- internal/storage/storage.go (Search method)\n\n**Testing:**\n- All filter combinations\n- Date format parsing\n- Daemon and direct mode","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-21T21:07:05.496726-05:00","updated_at":"2025-11-21T21:07:05.496726-05:00","dependencies":[{"issue_id":"bd-au0.5","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:05.497762-05:00","created_by":"daemon"}]} -{"id":"bd-d148","title":"GH#483: Pre-commit hook fails unnecessarily when .beads removed","description":"Pre-commit hook fails on bd sync when .beads directory exists but user is on branch without beads. Should exit gracefully. See GitHub issue #483.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:40.049785-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-qqc.10","title":"Upgrade local Homebrew installation","description":"Upgrade bd via Homebrew:\n\n```bash\nbrew update\nbrew upgrade bd\n/opt/homebrew/bin/bd version # Verify shows {{version}}\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:37.60241-08:00","updated_at":"2025-12-18T23:07:55.686598-08:00","closed_at":"2025-12-18T22:52:00.331429-08:00","dependencies":[{"issue_id":"bd-qqc.10","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:37.603893-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.10","depends_on_id":"bd-qqc.9","type":"blocks","created_at":"2025-12-18T22:43:21.458817-08:00","created_by":"daemon"}]} -{"id":"bd-yck","title":"Fix checkExistingBeadsData to be worktree-aware","description":"The checkExistingBeadsData function in cmd/bd/init.go checks for .beads in the current working directory, but for worktrees it should check the main repository root instead. This prevents proper worktree compatibility.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-07T16:48:32.082776345-07:00","updated_at":"2025-12-07T16:48:32.082776345-07:00"} -{"id":"bd-cb64c226.9","title":"Remove Cache-Related Tests","description":"Delete or update tests that assume multi-repo caching","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:44.511897-07:00","updated_at":"2025-12-17T23:18:29.110385-08:00","deleted_at":"2025-12-17T23:18:29.110385-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-d73u","title":"Re: Thread Test 2","description":"Great! Thread is working well.","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:46.655093-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-d73u","depends_on_id":"bd-vpan","type":"replies-to","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} -{"id":"bd-muw","title":"Add empty tasks validation in workflow create","description":"workflow.go:321 will panic if wf.Tasks is empty. Add validation that len(wf.Tasks) \u003e 0 before accessing wf.Tasks[0].","status":"closed","priority":3,"issue_type":"bug","created_at":"2025-12-17T22:23:00.75707-08:00","updated_at":"2025-12-17T22:34:07.281133-08:00","closed_at":"2025-12-17T22:34:07.281133-08:00"} -{"id":"bd-05a8","title":"Split large cmd/bd files: doctor.go (2948 lines), sync.go (2121 lines)","description":"Code health review found several oversized files:\n\n1. doctor.go - 2948 lines, 48 functions mixed together\n - Should split into doctor/checks/*.go for individual diagnostics\n - applyFixes() and previewFixes() are nearly identical\n\n2. sync.go - 2121 lines\n - ZFC (Zero Flush Check) logic embedded inline (lines 213-247)\n - Multiple mode handlers should be extracted\n\n3. init.go - 1732 lines\n4. compact.go - 1097 lines\n5. show.go - 1069 lines\n\nRecommendation: Extract into focused sub-packages or split into logical files.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-16T18:17:18.169927-08:00","updated_at":"2025-12-16T18:17:18.169927-08:00","dependencies":[{"issue_id":"bd-05a8","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.846503-08:00","created_by":"daemon"}]} -{"id":"bd-589x","title":"HANDOFF: Version 0.30.7 release in progress","description":"## Context\nDoing a 0.30.7 patch release with bug fixes.\n\n## What's done\n- Fixed #657: bd graph nil pointer crash (graph.go:102)\n- Fixed #652: Windows npm installer file lock (postinstall.js)\n- Updated CHANGELOG.md and info.go\n- Pushed to main, CI running (run 20390861825)\n- Created version-bump molecule template (bd-6s61) and instantiated for 0.30.7 (bd-8pyn)\n\n## In progress\nMolecule bd-8pyn has 3 remaining tasks:\n - bd-dxo7: Wait for CI to pass\n - bd-7l70: Verify release artifacts \n - bd-5c91: Update local installation\n\n## Check CI\n gh run list --repo steveyegge/beads --limit 1\n gh run view 20390861825 --repo steveyegge/beads\n\n## New feature filed\nbd-n777: Timer beads for scheduled agent callbacks\nDesign for Deacon-managed timers that can interrupt agents via tmux\n\n## Resume commands\n bd --no-daemon show bd-8pyn\n gh run list --repo steveyegge/beads --limit 1","status":"closed","priority":2,"issue_type":"message","created_at":"2025-12-19T23:06:14.902334-08:00","updated_at":"2025-12-20T00:49:51.927111-08:00","closed_at":"2025-12-20T00:25:59.596546-08:00"} -{"id":"bd-aydr.6","title":"Add unit tests for reset package","description":"Comprehensive unit tests for internal/reset package.\n\n## Test Cases\n\n### ValidateState tests\n- .beads/ exists ā†’ success\n- .beads/ missing ā†’ appropriate error\n- git dirty state detection\n\n### CountImpact tests \n- Empty .beads/ ā†’ zero counts\n- With issues ā†’ correct count (open vs closed)\n- With tombstones ā†’ correct count\n- Returns HasUncommitted correctly\n\n### Backup tests\n- Creates backup with correct timestamp format\n- Preserves all files and permissions\n- Returns correct path\n- Handles missing .beads/ gracefully\n- Errors on pre-existing backup dir\n\n### Git operation tests\n- CheckGitState detects dirty, detached, not-a-repo\n- GitRemoveBeads removes correct files\n- GitCommitReset creates commit with message\n- Operations skip gracefully when not in git repo\n\n### Reset tests (with mocks/temp dirs)\n- Soft reset removes files, calls init\n- Hard reset includes git operations\n- Dry run doesn't modify anything\n- SkipInit flag prevents re-initialization\n- Daemon killall is called\n- Backup is created when requested\n\n## Approach\n- Can start with interface definitions (TDD style)\n- Use testify for assertions\n- Create temp directories for isolation\n- Mock git operations where needed\n- Test completion depends on implementation tasks\n\n## File Location\n`internal/reset/reset_test.go`\n`internal/reset/backup_test.go`\n`internal/reset/git_test.go`","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:57.01739+11:00","updated_at":"2025-12-13T10:13:32.611698+11:00","closed_at":"2025-12-13T09:59:20.820314+11:00","dependencies":[{"issue_id":"bd-aydr.6","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:57.017813+11:00","created_by":"daemon"}]} -{"id":"bd-0vg","title":"Pinned issues: persistent context markers","description":"Add ability to pin issues so they remain visible and are excluded from work-finding commands. Pinned issues serve as persistent context markers (handoffs, architectural notes, recovery instructions) that should not be claimed as work items.\n\nUse Cases:\n1. Handoff messages - Pin session handoffs so new agents always see them\n2. Architecture decisions - Pin ADRs or design notes for reference \n3. Recovery context - Pin amnesia-cure notes that help agents orient\n\nCore commands: bd pin, bd unpin, bd list --pinned/--no-pinned","status":"open","priority":1,"issue_type":"epic","created_at":"2025-12-18T23:33:10.911092-08:00","updated_at":"2025-12-18T23:33:17.882415-08:00"} -{"id":"bd-ziy5","title":"GH#409: bd init uses issues.jsonl but docs say beads.jsonl","description":"bd init creates config referencing issues.jsonl but README/docs reference beads.jsonl as canonical. Standardize naming. See GitHub issue #409.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:58.109954-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-cbed9619.3","title":"Implement global N-way collision resolution algorithm","description":"**Summary:** Replaced pairwise collision resolution with a global N-way algorithm that deterministically resolves issue ID conflicts across multiple clones. The new approach groups collisions, deduplicates by content hash, and assigns sequential IDs to ensure consistent synchronization.\n\n**Key Decisions:**\n- Use content hash for global, stable sorting\n- Group collisions by base ID\n- Assign sequential IDs based on sorted unique versions\n- Eliminate order-dependent remapping logic\n\n**Resolution:** Implemented ResolveNWayCollisions function that guarantees deterministic issue ID assignment across multiple synchronization scenarios, solving the core challenge of maintaining consistency in distributed systems with potential conflicts.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:37:42.85616-07:00","updated_at":"2025-12-17T23:18:29.112335-08:00","dependencies":[{"issue_id":"bd-cbed9619.3","depends_on_id":"bd-cbed9619.5","type":"blocks","created_at":"2025-10-28T18:39:28.30886-07:00","created_by":"daemon"},{"issue_id":"bd-cbed9619.3","depends_on_id":"bd-cbed9619.4","type":"blocks","created_at":"2025-10-28T18:39:28.336312-07:00","created_by":"daemon"}],"deleted_at":"2025-12-17T23:18:29.112335-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-0zp7","title":"Add missing hook calls in mail reply and ack","description":"The mail commands are missing hook calls:\n\n1. runMailReply (mail.go:525-672) creates a message but doesn't call hookRunner.Run(hooks.EventMessage, ...) after creating the reply in direct mode (around line 640)\n\n2. runMailAck (mail.go:432-523) closes messages but doesn't call hookRunner.Run(hooks.EventClose, ...) after closing each message (around line 487 for daemon mode, 493 for direct mode)\n\nThis means GGT hooks won't fire for replies or message acknowledgments.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T20:52:53.069412-08:00","updated_at":"2025-12-17T23:13:40.532054-08:00","closed_at":"2025-12-17T17:22:59.368024-08:00"} -{"id":"bd-pbh.21","title":"Final release verification","description":"Verify all release artifacts are accessible:\n\n- [ ] `bd --version` shows 0.30.4\n- [ ] `bd version --daemon` shows 0.30.4\n- [ ] GitHub release exists: https://github.com/steveyegge/beads/releases/tag/v0.30.4\n- [ ] `brew upgrade beads \u0026\u0026 bd --version` shows 0.30.4 (if using Homebrew)\n- [ ] `pip show beads-mcp` shows 0.30.4\n- [ ] npm package available at 0.30.4\n- [ ] `bd info --whats-new` shows 0.30.4 notes\n\nRun final checks:\n```bash\nbd --version\nbd version --daemon\npip show beads-mcp | grep Version\nbd info --whats-new\n```\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.141249-08:00","updated_at":"2025-12-17T21:46:46.390985-08:00","closed_at":"2025-12-17T21:46:46.390985-08:00","dependencies":[{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.16","type":"blocks","created_at":"2025-12-17T21:19:11.398347-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.141549-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.18","type":"blocks","created_at":"2025-12-17T21:19:11.364839-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.19","type":"blocks","created_at":"2025-12-17T21:19:11.373656-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.20","type":"blocks","created_at":"2025-12-17T21:19:11.382-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.15","type":"blocks","created_at":"2025-12-17T21:19:11.389733-08:00","created_by":"daemon"}]} -{"id":"bd-kpy","title":"Sync race: rebase-based divergence recovery resurrects tombstones","description":"## Problem\nWhen two repos sync simultaneously, tombstones can be resurrected:\n\n1. Repo A deletes issue (creates tombstone), pushes to sync branch\n2. Repo B (with 'closed' status) exports and tries to push\n3. Push fails (non-fast-forward)\n4. fetchAndRebaseInWorktree does git rebase\n5. Git rebase applies B's 'closed' patch on top of A's 'tombstone'\n6. TEXT-level rebase doesn't invoke beads merge driver\n7. 'closed' overwrites 'tombstone' = resurrection\n\n## Root Cause\nCommitToSyncBranch uses git rebase for divergence recovery, but rebase is text-level, not content-level. The proper content-level merge in PullFromSyncBranch handles tombstones correctly, but it runs AFTER the problematic push.\n\n## Proposed Fix\nOption 1: Don't push in CommitToSyncBranch - let PullFromSyncBranch handle merge+push\nOption 2: Replace git rebase with content-level merge in fetchAndRebaseInWorktree\nOption 3: Reorder sync steps: Export ā†’ Pull/Merge ā†’ Commit ā†’ Push\n\n## Workaround Applied\nExcluded tombstones from orphan detection warnings (commit 1e97d9cc).\n\nSee also: bd-3852 (Add orphan detection migration)","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-17T23:29:33.049272-08:00","updated_at":"2025-12-17T23:29:33.049272-08:00"} -{"id":"bd-28db","title":"Add 'bd status' command for issue database overview","description":"Implement a bd status command that provides a quick snapshot of the issue database state, similar to how git status shows working tree state.\n\nExpected output: Show summary including counts by state (open, in-progress, blocked, closed), recent activity (last 7 days), and quick overview without needing multiple queries.\n\nExample output showing issue counts, recent activity stats, and pointer to bd list for details.\n\nProposed options: --all (show all issues), --assigned (show issues assigned to current user), --json (JSON format output)\n\nUse cases: Quick project health check, onboarding for new contributors, integration with shell prompts or CI/CD, daily standup reference","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-02T17:25:59.203549-08:00","updated_at":"2025-11-02T17:25:59.203549-08:00"} -{"id":"bd-ola6","title":"Implement transaction retry logic for SQLITE_BUSY","description":"BEGIN IMMEDIATE fails immediately on SQLITE_BUSY instead of retrying with exponential backoff.\n\nLocation: internal/storage/sqlite/sqlite.go:223-225\n\nProblem:\n- Under concurrent write load, BEGIN IMMEDIATE can fail with SQLITE_BUSY\n- Current implementation fails immediately instead of retrying\n- Results in spurious failures under normal concurrent usage\n\nSolution: Implement exponential backoff retry:\n- Retry up to N times (e.g., 5)\n- Backoff: 10ms, 20ms, 40ms, 80ms, 160ms\n- Check for context cancellation between retries\n- Only retry on SQLITE_BUSY/database locked errors\n\nImpact: Spurious failures under concurrent write load\n\nEffort: 3 hours","status":"open","priority":1,"issue_type":"feature","created_at":"2025-11-16T14:51:31.247147-08:00","updated_at":"2025-11-16T14:51:31.247147-08:00"} -{"id":"bd-r6a.4","title":"Add bd template list command","description":"Add a convenience command to list available templates:\n\nbd template list\n\nThis is equivalent to 'bd list --label=template' but more discoverable.\nCould also show variable placeholders found in each template.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T22:43:47.525316-08:00","updated_at":"2025-12-17T23:02:45.700582-08:00","closed_at":"2025-12-17T23:02:45.700582-08:00","dependencies":[{"issue_id":"bd-r6a.4","depends_on_id":"bd-r6a.2","type":"blocks","created_at":"2025-12-17T22:44:03.474353-08:00","created_by":"daemon"},{"issue_id":"bd-r6a.4","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:47.525743-08:00","created_by":"daemon"}]} -{"id":"bd-5qim","title":"Optimize GetReadyWork performance - 752ms on 10K database (target: \u003c50ms)","notes":"# Performance Analysis (10K Issue Database)\n\nAnalyzed using CPU profiles from benchmark suite on Apple M2 Pro.\n\n## Operation Performance\n\n| Operation | Time | Allocations | Memory |\n|----------------------------------|---------|-------------|--------|\n| bd ready (GetReadyWork) | ~752ms | 167,466 | 16MB |\n| bd list (SearchIssues no filter) | ~11.6ms | 89,214 | 5.8MB |\n| bd list (SearchIssues filtered) | ~9.2ms | 62,365 | 3.5MB |\n| bd create (CreateIssue) | ~2.6ms | 146 | 8.6KB |\n| bd update (UpdateIssue) | ~0.32ms | 364 | 15KB |\n| bd close (UpdateIssue) | ~0.32ms | 364 | 15KB |\n\n**Target: \u003c50ms for all operations on 10K database**\n\n**Current issue: GetReadyWork is 15x over target (752ms vs 50ms)**\n\n## Root Cause\n\nGetReadyWork (internal/storage/sqlite/ready.go:90-128) uses recursive CTE to propagate blocking:\n- 65x slower than SearchIssues\n- Recalculates entire blocked issue tree on every call\n- Algorithm:\n 1. Find directly blocked issues via 'blocks' dependencies\n 2. Recursively propagate blockage to descendants (max depth: 50)\n 3. Exclude all blocked issues from results\n\n## CPU Profile Analysis\n\n- Database syscalls (pthread_cond_signal, syscall6): ~75%\n- SQLite engine overhead: inherent to recursive CTE\n- Application code (query construction): \u003c1%\n\n**Bottleneck is the recursive CTE query execution, not application code.**\n\n## Optimization Recommendations\n\n### High Impact (Likely to achieve \u003c50ms target)\n\n1. **Cache blocked issue calculation**\n - Add `blocked_issues` table updated on dependency changes\n - Trade write complexity for read speed (ready called \u003e\u003e dependency changes)\n - Eliminates recursive CTE on every read\n\n2. **Add/verify database indexes**\n ```sql\n CREATE INDEX IF NOT EXISTS idx_dependencies_blocked \n ON dependencies(issue_id, type, depends_on_id);\n CREATE INDEX IF NOT EXISTS idx_issues_status \n ON issues(status);\n ```\n\n### Medium Impact\n\n3. **Reduce allocations** (167K allocations for GetReadyWork)\n - Profile `scanIssues()` for object pooling opportunities\n - Reuse slice capacity for repeated calls\n\n### Low Impact (Not recommended)\n- Query optimization for CRUD operations (already \u003c3ms)\n- Connection pooling tuning (not showing in profiles)\n\n## Verification\n\nRun benchmarks to validate optimization:\n```bash\nmake bench-quick\ngo tool pprof -http=:8080 internal/storage/sqlite/bench-cpu-*.prof\n```\n\nProfile files automatically generated in `internal/storage/sqlite/`.","status":"closed","issue_type":"bug","created_at":"2025-11-14T09:02:46.507526-08:00","updated_at":"2025-12-17T23:13:40.534258-08:00","closed_at":"2025-12-17T16:21:37.918868-08:00"} -{"id":"bd-z86n","title":"Code Review: PR #551 - Persist close_reason to issues table","description":"Code review of PR #551 which fixes close_reason persistence bug.\n\n## Summary\nThe PR correctly fixes a bug where close_reason was only stored in the events table, not in the issues.close_reason column. This caused `bd show --json` to return empty close_reason.\n\n## What Was Fixed\n- āœ… CloseIssue now updates both close_reason and closed_at\n- āœ… ReOpenIssue clears both close_reason and closed_at\n- āœ… Comprehensive tests added for both storage and CLI layers\n- āœ… Clear documentation in queries.go about dual storage strategy\n\n## Quality Assessment\nāœ… Tests cover both storage layer and CLI JSON output\nāœ… Handles reopen case (clearing close_reason)\nāœ… Good comments explaining dual-storage design\nāœ… No known issues\n\n## Potential Followups\nSee linked issues for suggestions.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:06.887069-08:00","updated_at":"2025-12-14T14:25:06.887069-08:00"} -{"id":"bd-tvu3","title":"Improve test coverage for internal/beads (48.1% ā†’ 70%)","description":"The beads package is a core package with 48.1% coverage. As the primary package for issue management, it should have at least 70% coverage.\n\nCurrent coverage: 48.1%\nTarget coverage: 70%","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-13T20:42:59.739142-08:00","updated_at":"2025-12-13T21:01:14.874359-08:00"} -{"id":"bd-pbh.7","title":"Update beads_mcp/__init__.py to 0.30.4","description":"Update __version__ in integrations/beads-mcp/src/beads_mcp/__init__.py:\n```python\n__version__ = \"0.30.4\"\n```\n\n\n```verify\ngrep -q '__version__ = \"0.30.4\"' integrations/beads-mcp/src/beads_mcp/__init__.py\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.005334-08:00","updated_at":"2025-12-17T21:46:46.254885-08:00","closed_at":"2025-12-17T21:46:46.254885-08:00","dependencies":[{"issue_id":"bd-pbh.7","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.005699-08:00","created_by":"daemon"}]} -{"id":"bd-xctp","title":"GH#519: bd sync fails when sync.branch is currently checked-out branch","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:06:05.319281-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-kyo","title":"Run tests and linting","description":"Run the full test suite and linter:\n\n```bash\nTMPDIR=/tmp go test -short ./...\ngolangci-lint run ./...\n```\n\nFix any failures. Linting warnings acceptable (see LINTING.md).","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:59.290588-08:00","updated_at":"2025-12-18T22:44:36.570262-08:00","closed_at":"2025-12-18T22:44:36.570262-08:00","dependencies":[{"issue_id":"bd-kyo","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.370234-08:00","created_by":"daemon"},{"issue_id":"bd-kyo","depends_on_id":"bd-8hy","type":"blocks","created_at":"2025-12-18T22:43:20.570742-08:00","created_by":"daemon"}]} -{"id":"bd-uutv","title":"Work on beads-rs0: Namepool configuration for themed pole...","description":"Work on beads-rs0: Namepool configuration for themed polecat names. See bd show beads-rs0 for full details.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T21:49:48.129778-08:00","updated_at":"2025-12-19T21:59:25.565894-08:00","closed_at":"2025-12-19T21:59:25.565894-08:00"} -{"id":"bd-aydr","title":"Add bd reset command for clean slate restart","description":"Implement a `bd reset` command to reset beads to a clean starting state.\n\n## Context\nGitHub issue #479 - users sometimes get beads into an invalid state after updates, and there's no clean way to start fresh. The git backup/restore mechanism that protects against accidental deletion also makes it hard to intentionally reset.\n\n## Design\n\n### Command Interface\n```\nbd reset [--hard] [--force] [--backup] [--dry-run] [--no-init]\n```\n\n| Flag | Effect |\n|------|--------|\n| `--hard` | Also remove from git index and commit |\n| `--force` | Skip confirmation prompt |\n| `--backup` | Create `.beads-backup-{timestamp}/` first |\n| `--dry-run` | Preview what would happen |\n| `--no-init` | Don't re-initialize after clearing |\n\n### Reset Levels\n1. **Soft Reset (default)** - Kill daemons, clear .beads/, re-init. Git history unchanged.\n2. **Hard Reset (`--hard`)** - Also git rm and commit the removal, then commit fresh state.\n\n### Implementation Flow\n1. Validate .beads/ exists\n2. If not --force: show impact summary, prompt confirmation\n3. If --backup: copy .beads/ to .beads-backup-{timestamp}/\n4. Kill daemons\n5. If --hard: git rm + commit\n6. rm -rf .beads/*\n7. If not --no-init: bd init (and git add+commit if --hard)\n8. Print summary\n\n### Safety Mechanisms\n- Confirmation prompt (skip with --force)\n- Impact summary (issue/tombstone counts)\n- Backup option\n- Dry-run preview\n- Git dirty check warning\n\n### Code Structure\n- `cmd/bd/reset.go` - CLI command\n- `internal/reset/` - Core logic package","status":"closed","priority":2,"issue_type":"epic","created_at":"2025-12-13T08:44:01.38379+11:00","updated_at":"2025-12-13T06:24:29.561294-08:00","closed_at":"2025-12-13T10:18:19.965287+11:00"} -{"id":"bd-r6a.2","title":"Implement subgraph cloning with variable substitution","description":"Core implementation of template instantiation:\n\n1. Add `bd template instantiate \u003ctemplate-id\u003e [--var key=value]...` command\n2. Implement subgraph loading:\n - Load template epic\n - Recursively load all children (and their children)\n - Load all dependencies between issues in the subgraph\n3. Implement variable substitution:\n - Scan titles and descriptions for `{{name}}` patterns\n - Replace with provided values\n - Error on missing required variables (or prompt interactively)\n4. Implement cloning:\n - Generate new IDs for all issues\n - Create cloned issues with substituted text\n - Remap and create dependencies\n5. Return the new epic ID\n\nConsider adding `--dry-run` flag to preview what would be created.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T22:43:25.179848-08:00","updated_at":"2025-12-17T23:02:29.034444-08:00","closed_at":"2025-12-17T23:02:29.034444-08:00","dependencies":[{"issue_id":"bd-r6a.2","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:25.180286-08:00","created_by":"daemon"},{"issue_id":"bd-r6a.2","depends_on_id":"bd-r6a.1","type":"blocks","created_at":"2025-12-17T22:44:03.15413-08:00","created_by":"daemon"}]} -{"id":"bd-2vh3","title":"Ephemeral issue cleanup and history compaction","description":"## Problem\n\nBeads history grows without bound. Every message, handoff, work assignment\nstays in issues.jsonl forever. Enterprise users will balk at \"git as database.\"\n\n## Solution: Two-Tier Cleanup\n\n### Tier 1: Ephemeral Cleanup (v1)\n\nbd cleanup --ephemeral --closed\n\n- Deletes closed issues where ephemeral=true from issues.jsonl\n- Safe: only removes explicitly marked ephemeral + closed\n- Preserves git history (commits still exist)\n- Run after swarm completion\n\n### Tier 2: History Compaction (v2)\n\nbd compact --squash\n\n- Rewrites issues.jsonl to remove tombstones\n- Optionally squashes git history (interactive rebase equivalent)\n- Preserves Merkle proofs for deleted items\n- Advanced: cold storage tiering\n\n## HOP Context\n\n| Layer | HOP Role | Persistence |\n|-------|----------|-------------|\n| Execution trace | None | Ephemeral |\n| Work scaffolding | None | Summarizable |\n| Work outcome | CV entry | Permanent |\n| Validation record | Stake proof | Permanent |\n\n\"Execution is ephemeral. Outcomes are permanent. You can't squash your CV.\"\n\n## Success Criteria\n\n- After cleanup --ephemeral: issues.jsonl only contains persistent work\n- Work outcomes preserved (CV entries)\n- Validation records preserved (stake proofs)\n- Execution scaffolding removed (transient coordination)","status":"open","priority":1,"issue_type":"feature","created_at":"2025-12-20T21:02:20.101367-08:00","updated_at":"2025-12-20T21:02:20.101367-08:00"} -{"id":"bd-n4td","title":"Add warning when staleness check errors","description":"## Problem\n\nWhen ensureDatabaseFresh() calls CheckStaleness() and it errors (corrupted metadata, permission issues, etc.), we silently proceed with potentially stale data.\n\n**Location:** cmd/bd/staleness.go:27-32\n\n**Scenarios:**\n- Corrupted metadata table\n- Database locked by another process \n- Permission issues reading JSONL file\n- Invalid last_import_time format in DB\n\n## Current Code\n\n```go\nisStale, err := autoimport.CheckStaleness(ctx, store, dbPath)\nif err \\!= nil {\n // If we can't determine staleness, allow operation to proceed\n // (better to show potentially stale data than block user)\n return nil\n}\n```\n\n## Fix\n\n```go\nisStale, err := autoimport.CheckStaleness(ctx, store, dbPath)\nif err \\!= nil {\n fmt.Fprintf(os.Stderr, \"Warning: Could not verify database freshness: %v\\n\", err)\n fmt.Fprintf(os.Stderr, \"Proceeding anyway. Data may be stale.\\n\\n\")\n return nil\n}\n```\n\n## Impact\nMedium - users should know when staleness check fails\n\n## Effort\nEasy - 5 minutes","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-11-20T20:16:34.889997-05:00","updated_at":"2025-12-17T23:13:40.531031-08:00","closed_at":"2025-12-17T19:11:12.950618-08:00","dependencies":[{"issue_id":"bd-n4td","depends_on_id":"bd-2q6d","type":"blocks","created_at":"2025-11-20T20:18:20.154723-05:00","created_by":"stevey"}]} -{"id":"bd-aay","title":"Warn on invalid depends_on references in workflow templates","description":"workflow.go:780-781 silently skips invalid dependency names. Should log a warning when a depends_on reference doesn't match any task ID in the template.","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T22:23:04.325253-08:00","updated_at":"2025-12-17T22:34:07.309495-08:00","closed_at":"2025-12-17T22:34:07.309495-08:00"} -{"id":"bd-qioh","title":"Standardize error handling: replace direct fmt.Fprintf+os.Exit with FatalError","description":"Code health review found inconsistent error handling patterns:\n\nPattern A (preferred): FatalError() from errors.go:21-24\nPattern B (inconsistent): Direct fmt.Fprintf(os.Stderr) + os.Exit(1)\n\nAffected files:\n- delete.go:35-49 uses direct pattern\n- create.go:213 ignores error silently\n- Various other commands\n\nFix: Standardize on FatalError() wrapper for consistent error messages and testability.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-16T18:17:19.309394-08:00","updated_at":"2025-12-16T18:17:19.309394-08:00","dependencies":[{"issue_id":"bd-qioh","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.953559-08:00","created_by":"daemon"}]} -{"id":"bd-7m16","title":"GH#519: bd sync fails when sync.branch is currently checked-out branch","description":"bd sync tries to create worktree for sync.branch even when already on that branch. Should commit directly instead. See GitHub issue #519.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:36.613211-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-kwro.5","title":"Graph Link: supersedes for version chains","description":"Implement supersedes link type for version tracking.\n\nNew command:\n- bd supersede \u003cid\u003e --with \u003cnew\u003e - marks id as superseded by new\n- Auto-closes the superseded issue\n\nQuery support:\n- bd show \u003cid\u003e shows 'Superseded by: \u003cnew\u003e'\n- bd show \u003cnew\u003e shows 'Supersedes: \u003cid\u003e'\n- bd list --superseded shows version chains\n\nStorage:\n- superseded_by column pointing to replacement issue\n\nUseful for design docs, specs, and evolving artifacts.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:41.749294-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-io8c","title":"Improve test coverage for internal/syncbranch (33.0% ā†’ 70%)","description":"The syncbranch package has only 33.0% test coverage. This package handles git sync operations and is critical for data integrity.\n\nCurrent coverage: 33.0%\nTarget coverage: 70%","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-13T20:43:02.079145-08:00","updated_at":"2025-12-13T21:01:14.972533-08:00"} -{"id":"bd-aydr.8","title":"Respond to GitHub issue #479 with solution","description":"Once bd reset is implemented and released, respond to GitHub issue #479.\n\n## Response should include\n- Announce the new bd reset command\n- Show basic usage examples\n- Link to any documentation\n- Thank the user for the feedback\n\n## Example response\n```\nThanks for raising this! We've added a `bd reset` command to handle this case.\n\nUsage:\n- `bd reset` - Reset to clean state (prompts for confirmation)\n- `bd reset --backup` - Create backup first\n- `bd reset --hard` - Also clean up git history\n\nThis is available in version X.Y.Z.\n```\n\n## Notes\n- Wait until feature is merged and released\n- Consider if issue should be closed or left for user confirmation","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-13T08:45:00.112351+11:00","updated_at":"2025-12-13T06:24:29.562177-08:00","closed_at":"2025-12-13T10:18:06.646796+11:00","dependencies":[{"issue_id":"bd-aydr.8","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:45:00.112732+11:00","created_by":"daemon"},{"issue_id":"bd-aydr.8","depends_on_id":"bd-aydr.7","type":"blocks","created_at":"2025-12-13T08:45:12.640243+11:00","created_by":"daemon"}]} -{"id":"bd-qqc.9","title":"Update Homebrew formula","description":"Update the Homebrew tap with new version:\n\n```bash\n./scripts/update-homebrew.sh {{version}}\n```\n\nThis script waits for GitHub Actions to complete (~5 min), then updates the formula with new SHA256 hashes.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:35.815096-08:00","updated_at":"2025-12-18T22:51:07.863862-08:00","closed_at":"2025-12-18T22:51:07.863862-08:00","dependencies":[{"issue_id":"bd-qqc.9","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:35.816752-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.9","depends_on_id":"bd-qqc.8","type":"blocks","created_at":"2025-12-18T22:43:21.332955-08:00","created_by":"daemon"}]} -{"id":"bd-a15d","title":"Add test files for internal/storage","description":"The internal/storage package has no test files at all. This package provides the storage interface abstraction.\n\nCurrent coverage: N/A (no test files)\nTarget: Add basic interface tests","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:11.363017-08:00","updated_at":"2025-12-13T21:01:20.925779-08:00"} -{"id":"bd-pbh.9","title":"Update hook templates to 0.30.4","description":"Update bd-hooks-version comment in all 4 hook templates:\n- cmd/bd/templates/hooks/pre-commit\n- cmd/bd/templates/hooks/post-merge\n- cmd/bd/templates/hooks/pre-push\n- cmd/bd/templates/hooks/post-checkout\n\nEach should have:\n```bash\n# bd-hooks-version: 0.30.4\n```\n\n\n```verify\ngrep -l 'bd-hooks-version: 0.30.4' cmd/bd/templates/hooks/* | wc -l | grep -q '4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.0248-08:00","updated_at":"2025-12-17T21:46:46.27561-08:00","closed_at":"2025-12-17T21:46:46.27561-08:00","dependencies":[{"issue_id":"bd-pbh.9","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.025124-08:00","created_by":"daemon"}]} -{"id":"bd-w193","title":"Work on beads-399: Add omitempty to JSONL fields for smal...","description":"Work on beads-399: Add omitempty to JSONL fields for smaller notifications. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:37.440894-08:00","updated_at":"2025-12-20T00:26:12.607705-08:00","closed_at":"2025-12-19T23:23:09.542288-08:00"} -{"id":"bd-rp4o","title":"Deleted issues resurrect during bd sync (tombstones not propagating)","description":"## Problem\n\nWhen issues are deleted with bd delete --force, they get deleted from the local DB but resurrect during the next bd sync.\n\n## Reproduction\n\n1. Observe orphan warnings (bd-cb64c226.*, bd-cbed9619.*)\n2. Delete them: bd delete bd-cb64c226.1 ... --force\n3. Run bd sync\n4. Orphan warnings reappear - issues were resurrected!\n\n## Root Cause Hypothesis\n\nThe sync branch workflow (beads-sync) has the old state before deletions. When bd sync pulls from beads-sync and copies JSONL to main, the deleted issues are re-imported.\n\nTombstones may not be properly:\n1. Written to beads-sync during export\n2. Propagated during pull/merge\n3. Honored during import\n\n## Related\n\n- bd-7b7h: chicken-and-egg sync.branch bug (same workflow)\n- bd-ncwo: ID-based fallback matching to prevent ghost resurrection\n\n## Files to Investigate\n\n- cmd/bd/sync.go (export/import flow)\n- internal/syncbranch/worktree.go (PullFromSyncBranch, copyJSONLToMainRepo)\n- internal/importer/ (tombstone handling)","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T23:09:43.072696-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-cbed9619.5","title":"Add content-addressable identity to Issue type","description":"**Summary:** Added content-addressable identity to Issue type by implementing a ContentHash field that generates a unique SHA256 fingerprint based on semantic issue content. This resolves issue identification challenges when multiple system instances create issues with identical IDs but different contents.\n\n**Key Decisions:**\n- Use SHA256 for content hashing\n- Hash excludes ID and timestamps\n- Compute hash automatically at creation/import time\n- Add database column for hash storage\n\n**Resolution:** Successfully implemented a deterministic content hashing mechanism that enables reliable issue identification across distributed systems, improving data integrity and collision detection.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:36:44.914967-07:00","updated_at":"2025-12-17T23:18:29.112933-08:00","deleted_at":"2025-12-17T23:18:29.112933-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-qqc.2","title":"Add {{version}} to versionChanges in info.go","description":"Add new entry at the TOP of versionChanges array in cmd/bd/info.go:\n\n```go\n{\n Version: \"{{version}}\",\n Date: \"{{date}}\",\n Changes: []string{\n // Add notable changes here\n },\n},\n```\n\nCopy changes from CHANGELOG.md [Unreleased] section.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:27.032117-08:00","updated_at":"2025-12-18T23:34:18.631996-08:00","closed_at":"2025-12-18T22:41:41.836137-08:00","dependencies":[{"issue_id":"bd-qqc.2","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:27.032746-08:00","created_by":"stevey"}]} -{"id":"bd-au0","title":"Command Set Standardization \u0026 Flag Consistency","description":"Comprehensive improvements to bd command set based on 2025 audit findings.\n\n## Background\nSee docs/command-audit-2025.md for detailed analysis.\n\n## Goals\n1. Standardize flag naming and behavior across all commands\n2. Add missing flags for feature parity\n3. Fix naming confusion\n4. Improve consistency in JSON output\n\n## Success Criteria\n- All mutating commands support --dry-run (no --preview variants)\n- bd update supports label operations\n- bd search has filter parity with bd list\n- Priority flags accept both int and P0-P4 format everywhere\n- JSON output is consistent across all commands","status":"open","priority":2,"issue_type":"epic","created_at":"2025-11-21T21:05:55.672749-05:00","updated_at":"2025-11-21T21:05:55.672749-05:00"} -{"id":"bd-lxzx","title":"Add close_reason to JSONL export format documentation","description":"PR #551 now persists close_reason to the database, but there's a question about whether this field should be exported to JSONL format.\n\n## Current State\n- close_reason is stored in issues.close_reason column\n- close_reason is also stored in events table (audit trail)\n- The JSONL export format may or may not include close_reason\n\n## Questions\n1. Should close_reason be exported to JSONL format?\n2. If yes, where should it go (root level or nested in events)?\n3. Should there be any special handling to avoid duplication?\n4. How should close_reason be handled during JSONL import?\n\n## Why This Matters\n- JSONL is the git-friendly sync format\n- Other beads instances import from JSONL\n- close_reason is meaningful data that should be preserved across clones\n\n## Suggested Action\n- Check if close_reason is currently exported in JSONL\n- If not, add it to the export schema\n- Document the field in JSONL format spec\n- Add tests for round-trip (export -\u003e import -\u003e verify close_reason)","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:17.414916-08:00","updated_at":"2025-12-14T14:25:17.414916-08:00","dependencies":[{"issue_id":"bd-lxzx","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:17.416131-08:00","created_by":"stevey"}]} -{"id":"bd-dsp","title":"Test stdin body-file","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T17:27:32.098806-08:00","updated_at":"2025-12-17T17:28:33.832749-08:00","closed_at":"2025-12-17T17:28:33.832749-08:00"} -{"id":"bd-au0.8","title":"Improve clean vs cleanup command naming/documentation","description":"Clarify the difference between bd clean and bd cleanup to reduce user confusion.\n\n**Current state:**\n- bd clean: Remove temporary artifacts (.beads/bd.sock, logs, etc.)\n- bd cleanup: Delete old closed issues from database\n\n**Options:**\n1. Rename for clarity:\n - bd clean ā†’ bd clean-temp\n - bd cleanup ā†’ bd cleanup-issues\n \n2. Keep names but improve help text and documentation\n\n3. Add prominent warnings in help output\n\n**Preferred approach:** Option 2 (improve documentation)\n- Update short/long descriptions in commands\n- Add examples to help text\n- Update README.md\n- Add cross-references in help output\n\n**Files to modify:**\n- cmd/bd/clean.go\n- cmd/bd/cleanup.go\n- README.md or ADVANCED.md","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-21T21:07:49.960534-05:00","updated_at":"2025-11-21T21:07:49.960534-05:00","dependencies":[{"issue_id":"bd-au0.8","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:49.962743-05:00","created_by":"daemon"}]} -{"id":"bd-hlsw.4","title":"Sync branch integrity guards","description":"Track sync branch parent commit. If sync branch was force-pushed, warn user and require confirmation before proceeding. Add option to reset to remote if user accepts rebase. Prevents silent corruption from forced pushes.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-14T10:40:20.645402352-07:00","updated_at":"2025-12-14T10:40:20.645402352-07:00","dependencies":[{"issue_id":"bd-hlsw.4","depends_on_id":"bd-hlsw","type":"parent-child","created_at":"2025-12-14T10:40:20.646425761-07:00","created_by":"daemon"}]} -{"id":"bd-bgr","title":"Test stdin 2","description":"Description from stdin test\n","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T17:28:05.41434-08:00","updated_at":"2025-12-17T17:28:33.833288-08:00","closed_at":"2025-12-17T17:28:33.833288-08:00"} -{"id":"bd-f3ll","title":"Merge: bd-ot0w","description":"branch: polecat/dementus\ntarget: main\nsource_issue: bd-ot0w\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:20:33.495772-08:00","updated_at":"2025-12-19T23:20:33.495772-08:00"} -{"id":"bd-d3e5","title":"Test issue 2","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-14T11:21:13.878680387-07:00","updated_at":"2025-12-14T11:21:13.878680387-07:00","closed_at":"2025-12-14T00:32:13.890274-08:00"} -{"id":"bd-z8a6","title":"bd delete --from-file should add deleted issues to deletions manifest","description":"When using bd delete --from-file to bulk delete issues, the deleted issue IDs are not being added to the deletions.jsonl manifest.\n\nThis causes those issues to be resurrected during bd sync when git history scanning finds them in old commits.\n\nExpected: All deleted issues should be added to deletions.jsonl so they wont be reimported from git history.\n\nWorkaround: Manually add deletion records to deletions.jsonl.","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T01:48:14.099855-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-whgv","title":"Merge: bd-401h","description":"branch: polecat/rictus\ntarget: main\nsource_issue: bd-401h\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:20:37.854953-08:00","updated_at":"2025-12-19T23:20:37.854953-08:00"} -{"id":"bd-n777","title":"Timer beads for scheduled agent callbacks","description":"## Problem\n\nAgents frequently need to wait for external events (CI completion, PR reviews, artifact builds) but have no good mechanism:\n- `sleep N` blocks and is unreliable (often times out at 8+ minutes)\n- Polling wastes context and is easy to forget\n- No way to survive session restarts\n\n## Proposal: Timer Beads\n\nA new bead type or field that represents a scheduled callback:\n\n### Creating timers\n```bash\nbd timer create --in 30s --callback \"Check CI run 12345\" --issue bd-xyz\nbd timer create --at \"2025-12-20T08:00:00\" --callback \"Morning standup\"\nbd timer create --in 5m --on-expire \"tmux send-keys -t dave 'bd show bd-xyz'\"\n```\n\n### Timer storage\n- Store in beads (survives restarts)\n- Fields: `expires_at`, `callback_description`, `on_expire_command`, `linked_issue`\n- Status: pending, fired, cancelled\n\n### Deacon integration\nThe Deacon daemon monitors timer beads:\n1. Wakes on next timer expiry\n2. Executes `on_expire` command (e.g., tmux send-keys to interrupt agent)\n3. Marks timer as fired\n4. Optionally updates linked issue\n\n### Use cases\n- CI monitoring: \"ping me when build completes\"\n- PR reviews: \"check back in 1 hour\"\n- Scheduled tasks: \"remind me at EOD to sync\"\n- Blocking waits: agent registers callback instead of sleeping\n\n## Acceptance criteria\n- [ ] Timer bead type or field design\n- [ ] `bd timer create/list/cancel` commands\n- [ ] Deacon timer monitoring loop\n- [ ] tmux integration for agent interrupts\n- [ ] Survives daemon restarts","status":"open","priority":2,"issue_type":"feature","created_at":"2025-12-19T23:05:33.051861-08:00","updated_at":"2025-12-19T23:05:33.051861-08:00"} -{"id":"bd-n386","title":"Improve test coverage for internal/daemon (27.3% ā†’ 60%)","description":"The daemon package has only 27.3% test coverage. The daemon is critical for background operations and reliability.\n\nKey areas needing tests:\n- Daemon autostart logic\n- Socket handling\n- PID file management\n- Health checks\n\nCurrent coverage: 27.3%\nTarget coverage: 60%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:00.895238-08:00","updated_at":"2025-12-13T21:01:17.274438-08:00"} -{"id":"bd-sumr","title":"Merge: bd-t4sb","description":"branch: polecat/capable\ntarget: main\nsource_issue: bd-t4sb\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:22:21.343724-08:00","updated_at":"2025-12-19T23:22:21.343724-08:00"} -{"id":"bd-pbh.20","title":"Update git hooks","description":"Install the updated hooks:\n```bash\nbd hooks install\n```\n\nVerify hook version:\n```bash\ngrep 'bd-hooks-version' .git/hooks/pre-commit\n```\n\n\n```verify\ngrep -q 'bd-hooks-version: 0.30.4' .git/hooks/pre-commit 2\u003e/dev/null || echo 'Hooks may not be installed - verify manually'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.13198-08:00","updated_at":"2025-12-17T21:46:46.381519-08:00","closed_at":"2025-12-17T21:46:46.381519-08:00","dependencies":[{"issue_id":"bd-pbh.20","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.132306-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.20","depends_on_id":"bd-pbh.17","type":"blocks","created_at":"2025-12-17T21:19:11.352288-08:00","created_by":"daemon"}]} -{"id":"bd-379","title":"Implement `bd setup cursor` for Cursor IDE integration","description":"Create a `bd setup cursor` command that integrates Beads workflow into Cursor IDE via .cursorrules file. Unlike Claude Code (which has hooks), Cursor uses a static rules file to provide context to its AI.","status":"open","priority":3,"issue_type":"feature","created_at":"2025-11-11T23:32:22.170083-08:00","updated_at":"2025-11-11T23:32:22.170083-08:00"} -{"id":"bd-dp4w","title":"Test message","description":"This is a test message body","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:11:58.467876-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} -{"id":"bd-m8ro","title":"Improve test coverage for internal/rpc (47.5% ā†’ 60%)","description":"The RPC package has only 47.5% test coverage. RPC is the communication layer for daemon operations.\n\nCurrent coverage: 47.5%\nTarget coverage: 60%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:09.515299-08:00","updated_at":"2025-12-13T21:01:17.17404-08:00"} -{"id":"bd-4y4g","title":"Bump version in all files","description":"Run ./scripts/bump-version.sh {{version}} to update 10 version files. Then run with --commit after info.go is updated.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:01.859728-08:00","updated_at":"2025-12-18T22:46:24.537336-08:00","closed_at":"2025-12-18T22:46:24.537336-08:00","dependencies":[{"issue_id":"bd-4y4g","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.623724-08:00","created_by":"daemon"},{"issue_id":"bd-4y4g","depends_on_id":"bd-8v2","type":"blocks","created_at":"2025-12-18T22:43:20.823329-08:00","created_by":"daemon"}]} -{"id":"bd-qqc.6","title":"Create git tag v{{version}}","description":"Create the release tag:\n\n```bash\ngit tag v{{version}}\n```\n\nVerify: `git tag | grep {{version}}`","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T13:00:15.495086-08:00","updated_at":"2025-12-18T23:34:18.632308-08:00","closed_at":"2025-12-18T22:41:41.874099-08:00","dependencies":[{"issue_id":"bd-qqc.6","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T13:00:15.496036-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.6","depends_on_id":"bd-qqc.5","type":"blocks","created_at":"2025-12-18T13:01:07.478315-08:00","created_by":"stevey"}]} -{"id":"bd-7h5","title":"Add pinned field to issue schema","description":"Add boolean 'pinned' field to the issue schema. When true, the issue is marked as a persistent context marker that should not be treated as a work item.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:26.767247-08:00","updated_at":"2025-12-19T00:08:59.854605-08:00","closed_at":"2025-12-19T00:08:59.854605-08:00","dependencies":[{"issue_id":"bd-7h5","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:55.98635-08:00","created_by":"daemon"}]} -{"id":"bd-cb64c226.12","title":"Remove Storage Cache from Server Struct","description":"Eliminate cache fields and use s.storage directly","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:25.474412-07:00","updated_at":"2025-12-17T23:18:29.111039-08:00","deleted_at":"2025-12-17T23:18:29.111039-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-pbh.14","title":"Monitor PyPI publish","description":"Watch the PyPI publish action:\nhttps://github.com/steveyegge/beads/actions/workflows/pypi-publish.yml\n\nVerify at: https://pypi.org/project/beads-mcp/0.30.4/\n\nCheck:\n```bash\npip index versions beads-mcp 2\u003e/dev/null | grep -q '0.30.4'\n```\n\n\n```verify\npip index versions beads-mcp 2\u003e/dev/null | grep -q '0.30.4' || curl -s https://pypi.org/pypi/beads-mcp/json | jq -e '.releases[\"0.30.4\"]'\n```","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.083809-08:00","updated_at":"2025-12-17T21:46:46.320922-08:00","closed_at":"2025-12-17T21:46:46.320922-08:00","dependencies":[{"issue_id":"bd-pbh.14","depends_on_id":"bd-pbh.12","type":"blocks","created_at":"2025-12-17T21:19:11.289698-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.14","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.084126-08:00","created_by":"daemon"}]} -{"id":"bd-7tuu","title":"Commit and push release","description":"git add -A \u0026\u0026 git commit \u0026\u0026 git push to trigger CI","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:02.053382-08:00","updated_at":"2025-12-20T01:23:52.484043-08:00","closed_at":"2025-12-20T01:23:52.484043-08:00","dependencies":[{"issue_id":"bd-7tuu","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.021087-08:00","created_by":"daemon"},{"issue_id":"bd-7tuu","depends_on_id":"bd-hw3w","type":"blocks","created_at":"2025-12-19T22:56:23.291591-08:00","created_by":"daemon"}]} -{"id":"bd-06px","title":"bd sync --from-main fails: unknown flag --no-git-history","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-17T14:32:02.998106-08:00","updated_at":"2025-12-17T23:13:40.531756-08:00","closed_at":"2025-12-17T17:21:48.506039-08:00"} -{"id":"bd-0w5","title":"Fix update-hooks verification in version-bump.yaml","description":"The update-hooks task verification command at version-bump.yaml:358 always succeeds due to '|| echo ...' fallback. Remove the fallback so verification actually fails when hooks aren't installed.","status":"closed","priority":3,"issue_type":"bug","created_at":"2025-12-17T22:23:06.55467-08:00","updated_at":"2025-12-17T22:34:07.290409-08:00","closed_at":"2025-12-17T22:34:07.290409-08:00"} -{"id":"bd-4sfl","title":"Merge: bd-14ie","description":"branch: polecat/toast\ntarget: main\nsource_issue: bd-14ie\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:23:37.360782-08:00","updated_at":"2025-12-19T23:23:37.360782-08:00"} -{"id":"bd-1slh","title":"Investigate charmbracelet-based TUI for beads","description":"Now that we've merged the create-form command (PR #603) which uses charmbracelet/huh, investigate whether beads should have a more comprehensive TUI.\n\nConsiderations:\n- Should this be in core or a separate binary (bd-tui)?\n- What functionality would benefit from a TUI? (list view, issue details, search, bulk operations)\n- Plugin/extension architecture vs build tags vs separate binary\n- Dependency cost vs user experience tradeoff\n- Target audience: humans who want interactive workflows vs CLI/scripting users\n\nRelated: PR #603 added charmbracelet/huh dependency for create-form command.","status":"open","priority":3,"issue_type":"feature","created_at":"2025-12-17T14:20:51.503563-08:00","updated_at":"2025-12-17T14:20:51.503563-08:00"} -{"id":"bd-4uoc","title":"Code Review Followup Summary: PR #481 + PR #551","description":"## Merged PRs Summary\n\n### PR #551: Persist close_reason to issues table\n- āœ… Merged successfully\n- āœ… Bug fix: close_reason now persisted in database column (not just events table)\n- āœ… Comprehensive test coverage added\n- āœ… Handles reopen case (clearing close_reason)\n\n**Followup Issues Filed:**\n- bd-lxzx: Document close_reason in JSONL export format\n- bd-077e: Update CLI documentation for close_reason field\n\n---\n\n### PR #481: Context Engineering Optimizations (80-90% context reduction)\n- āœ… Merged successfully \n- āœ… Lazy tool discovery: discover_tools() + get_tool_info()\n- āœ… Minimal issue models: IssueMinimal (~80% smaller than full Issue)\n- āœ… Result compaction: Auto-compacts results \u003e20 items\n- āœ… All 28 tests passing\n- āš ļø Breaking change: ready() and list() return type changed\n\n**Followup Issues Filed:**\n- bd-b318: Add integration tests for CompactedResult\n- bd-4u2b: Make compaction settings configurable (THRESHOLD, PREVIEW_COUNT)\n- bd-2kf8: Document CompactedResult response format in CONTEXT_ENGINEERING.md\n- bd-pdr2: Document backwards compatibility considerations\n\n---\n\n## Overall Assessment\n\nBoth PRs are production-ready with solid implementations. All critical functionality works and tests pass. Followup issues focus on:\n1. Documentation improvements (5 issues)\n2. Integration test coverage (1 issue)\n3. Configuration flexibility (1 issue)\n4. Backwards compatibility guidance (1 issue)\n\nNo critical bugs or design issues found.\n\n## Review Completed By\nCode review process completed. Issues auto-created for tracking improvements.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:59.214886-08:00","updated_at":"2025-12-14T14:25:59.214886-08:00","dependencies":[{"issue_id":"bd-4uoc","depends_on_id":"bd-otf4","type":"discovered-from","created_at":"2025-12-14T14:25:59.216884-08:00","created_by":"stevey"},{"issue_id":"bd-4uoc","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:59.217296-08:00","created_by":"stevey"}]} -{"id":"bd-j6lr","title":"GH#402: Add --parent flag documentation to bd onboard","description":"bd onboard output is missing --parent flag for epic subtasks. Agents guess wrong syntax (--deps parent:). See GitHub issue #402.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:56.594829-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-cb64c226.8","title":"Update Metrics and Health Endpoints","description":"Remove cache-related metrics from health/metrics endpoints","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:49.212047-07:00","updated_at":"2025-12-17T23:18:29.110022-08:00","deleted_at":"2025-12-17T23:18:29.110022-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-3852","title":"Add orphan detection migration","description":"Create migration to detect orphaned children in existing databases. Query: SELECT id FROM issues WHERE id LIKE '%.%' AND substr(id, 1, instr(id || '.', '.') - 1) NOT IN (SELECT id FROM issues). Log results, let user decide action (delete orphans or convert to top-level).","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-04T12:32:30.727044-08:00","updated_at":"2025-11-04T12:32:30.727044-08:00"} -{"id":"bd-6gd","title":"Remove legacy MCP Agent Mail integration","description":"## Summary\n\nRemove the legacy MCP Agent Mail system that requires an external HTTP server. Keep the native `bd mail` system which stores messages as git-synced issues.\n\n## Background\n\nTwo mail systems exist in the codebase:\n1. **Legacy Agent Mail** (`bd message`) - External server dependency, complex setup\n2. **Native bd mail** (`bd mail`) - Built-in, git-synced, no dependencies\n\nThe legacy system causes confusion and is no longer needed. Gas Town's Town Mail will use the native `bd mail` system.\n\n## Files to Delete\n\n### CLI Command\n- [ ] `cmd/bd/message.go` - The `bd message` command implementation\n\n### MCP Integration\n- [ ] `integrations/beads-mcp/src/beads_mcp/mail.py` - HTTP wrapper for Agent Mail server\n- [ ] `integrations/beads-mcp/src/beads_mcp/mail_tools.py` - MCP tool definitions\n- [ ] `integrations/beads-mcp/tests/test_mail.py` - Tests for legacy mail\n\n### Documentation\n- [ ] `docs/AGENT_MAIL.md`\n- [ ] `docs/AGENT_MAIL_QUICKSTART.md`\n- [ ] `docs/AGENT_MAIL_DEPLOYMENT.md`\n- [ ] `docs/AGENT_MAIL_MULTI_WORKSPACE_SETUP.md`\n- [ ] `docs/adr/002-agent-mail-integration.md`\n\n## Code to Update\n\n- [ ] Remove `message` command registration from `cmd/bd/main.go`\n- [ ] Remove mail tool imports/registration from MCP server `__init__.py` or `server.py`\n- [ ] Check for any other references to Agent Mail in the codebase\n\n## Verification\n\n- [ ] `bd message` command no longer exists\n- [ ] `bd mail` command still works\n- [ ] MCP server starts without errors\n- [ ] Tests pass\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T23:04:04.099935-08:00","updated_at":"2025-12-17T23:13:24.128752-08:00","closed_at":"2025-12-17T23:13:24.128752-08:00"} -{"id":"bd-qqc.12","title":"Restart daemon with {{version}}","description":"Restart the bd daemon to pick up new version:\n\n```bash\nbd daemon --stop\nbd daemon --start\nbd daemon --health # Verify Version: {{version}}\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:08:04.155448-08:00","updated_at":"2025-12-18T23:09:05.777375-08:00","closed_at":"2025-12-18T23:09:05.777375-08:00","dependencies":[{"issue_id":"bd-qqc.12","depends_on_id":"bd-qqc.11","type":"blocks","created_at":"2025-12-18T23:08:19.779897-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.12","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T23:08:04.155832-08:00","created_by":"daemon"}]} -{"id":"bd-xj2e","title":"GH#522: Add --type flag to bd update command","description":"Add --type flag to bd update for changing issue type (task/epic/bug/feature). Storage layer already supports it. See GitHub issue #522.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:12.506583-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-cb64c226.1","title":"Performance Validation","description":"Confirm no performance regression from cache removal","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T10:50:15.126019-07:00","updated_at":"2025-12-17T23:18:29.108883-08:00","deleted_at":"2025-12-17T23:18:29.108883-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-kwro.10","title":"Tests for messaging and graph links","description":"Comprehensive test coverage for all new features.\n\nTest files:\n- cmd/bd/mail_test.go - mail command tests\n- internal/storage/sqlite/graph_links_test.go - graph link tests\n- internal/hooks/hooks_test.go - hook execution tests\n\nTest cases:\n- Mail send/inbox/read/ack lifecycle\n- Thread creation and traversal (replies_to)\n- Bidirectional relates_to\n- Duplicate marking and queries\n- Supersedes chains\n- Ephemeral cleanup\n- Identity resolution priority\n- Hook execution (mock hooks)\n- Schema migration preserves data\n\nTarget: \u003e80% coverage on new code","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T03:02:34.050136-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-kwro.8","title":"Hooks System","description":"Implement hook system for extensibility.\n\nHook directory: .beads/hooks/\nHook files (executable scripts):\n- on_create - runs after bd create\n- on_update - runs after bd update \n- on_close - runs after bd close\n- on_message - runs after bd mail send\n\nHook invocation:\n- Pass issue ID as first argument\n- Pass event type as second argument\n- Pass JSON issue data on stdin\n- Run asynchronously (dont block command)\n\nExample hook (GGT notification):\n #!/bin/bash\n gt notify --event=$2 --issue=$1\n\nThis allows GGT to register notification handlers without Beads knowing about GGT.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:02:23.086393-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-pbh.8","title":"Update npm-package/package.json to 0.30.4","description":"Update version field in npm-package/package.json:\n```json\n\"version\": \"0.30.4\"\n```\n\n\n```verify\njq -e '.version == \"0.30.4\"' npm-package/package.json\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.014905-08:00","updated_at":"2025-12-17T21:46:46.268821-08:00","closed_at":"2025-12-17T21:46:46.268821-08:00","dependencies":[{"issue_id":"bd-pbh.8","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.01529-08:00","created_by":"daemon"}]} -{"id":"bd-r6a","title":"Redesign workflow system: templates as native Beads","description":"## Problem\n\nThe current workflow system (YAML templates in cmd/bd/templates/workflows/) is architecturally flawed:\n\n1. **Out-of-band data plane** - YAML files are a parallel system outside Beads itself\n2. **Heavyweight DSL** - YAML is gross; even TOML would have been better, but neither is ideal\n3. **Not graph-native** - Beads IS already a dependency graph with priorities, so why reinvent it?\n4. **Can't use bd commands on templates** - They're opaque YAML, not viewable/editable Beads\n\n## The Right Design\n\n**Templates should be Beads themselves.**\n\nA \"workflow template\" should be:\n- An epic marked as a template (via label, type, or prefix like `tpl-`)\n- Child issues with dependencies between them (using normal bd dep)\n- Titles and descriptions containing `{{variable}}` placeholders\n- Normal priorities that control serialization order\n\n\"Instantiation\" becomes:\n1. Clone the template subgraph (epic + children + dependencies)\n2. Substitute variables in titles/descriptions\n3. Generate new IDs for all cloned issues\n4. Return the new epic ID\n\n## Benefits\n\n- **No YAML** - Templates are just Beads\n- **Use existing tools** - `bd show`, `bd edit`, `bd dep` work on templates\n- **Graph-native** - Dependencies are real Beads dependencies\n- **Simpler codebase** - Remove all the YAML parsing/workflow code\n- **Composable** - Templates can reference other templates\n\n## Tasks\n\n1. Delete the YAML workflow system code (revert recent push + remove existing workflow code)\n2. Design template marking convention (label? type? id prefix?)\n3. Implement `bd template create` or `bd clone --as-template`\n4. Implement `bd template instantiate \u003ctemplate-id\u003e --var key=value`\n5. Migrate version-bump workflow to native Beads template\n6. Update documentation","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-17T22:41:57.359643-08:00","updated_at":"2025-12-18T17:42:26.000769-08:00","closed_at":"2025-12-18T13:47:04.632525-08:00"} -{"id":"bd-s2t","title":"wish: a 'continue' or similar cmd/flag which means alter last issue","description":"so many time I create an issue and then have another thought: 'oh, before I did X and it crashed there was ZZZ happening' or 'actually that is P4 not P2'. It would be nice if when `bd {cmd}` is used without a {title} or {id} it just adds or updates the most recently touched issue.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-08T06:46:37.529160416-07:00","updated_at":"2025-12-08T06:46:37.529160416-07:00"} -{"id":"bd-pbh","title":"Release v0.30.4","description":"## Version Bump Workflow\n\nCoordinating release from 0.30.3 to 0.30.4.\n\n### Components Updated\n- Go CLI (cmd/bd/version.go)\n- Claude Plugin (.claude-plugin/*.json)\n- MCP Server (integrations/beads-mcp/)\n- npm Package (npm-package/package.json)\n- Git hooks (cmd/bd/templates/hooks/)\n\n### Release Channels\n- GitHub Releases (GoReleaser)\n- PyPI (beads-mcp)\n- npm (@beads/cli)\n- Homebrew (homebrew-beads tap)\n","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-17T21:19:10.926133-08:00","updated_at":"2025-12-17T21:46:46.192948-08:00","closed_at":"2025-12-17T21:46:46.192948-08:00"} -{"id":"bd-n3v","title":"Error committing to sync branch: failed to create worktree","description":"\u003e bd sync --no-daemon\nā†’ Exporting pending changes to JSONL...\nā†’ Committing changes to sync branch 'beads-sync'...\nError committing to sync branch: failed to create worktree: failed to create worktree parent directory: mkdir /var/home/matt/dev/beads/fix-ci/.git: not a directory","notes":"**Problem Diagnosed**: The `bd sync` command was failing with \"mkdir /var/home/matt/dev/beads/fix-ci/.git: not a directory\" because it was being executed from the wrong directory.\n\n**Root Cause**: The command was run from `/var/home/matt/dev/beads` (where the `fix-ci` worktree exists) instead of the main repository directory `/var/home/matt/dev/beads/main`. Since `fix-ci` is a git worktree with a `.git` file (not directory), the worktree creation logic failed when trying to create `\u003ccurrent_dir\u003e/.git/beads-worktrees/\u003cbranch\u003e`.\n\n**Solution Verified**: Execute `bd sync` from the main repository directory:\n```bash\ncd main \u0026\u0026 bd sync --dry-run\n```\n","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-05T15:25:24.514998248-07:00","updated_at":"2025-12-05T15:42:32.910166956-07:00"} -{"id":"bd-by0d","title":"Work on beads-ldv: Fix bd graph crashes with nil pointer ...","description":"Work on beads-ldv: Fix bd graph crashes with nil pointer dereference (GH#657). Fix nil pointer in computeDependencyCounts at graph.go:428. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:27.829359-08:00","updated_at":"2025-12-20T00:26:12.607018-08:00","closed_at":"2025-12-19T23:20:49.038441-08:00"} -{"id":"bd-ot0w","title":"Work on beads-tip: Fix broken Claude integration link in ...","description":"Work on beads-tip: Fix broken Claude integration link in bd doctor (GH#623). Update URL that doesn't exist. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:08.429157-08:00","updated_at":"2025-12-19T23:20:39.790305-08:00","closed_at":"2025-12-19T23:20:39.790305-08:00"} -{"id":"bd-cb64c226.10","title":"Delete server_cache_storage.go","description":"Remove the entire cache implementation file (~286 lines)","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:38.729299-07:00","updated_at":"2025-12-17T23:18:29.110716-08:00","deleted_at":"2025-12-17T23:18:29.110716-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-gjla","title":"Test Thread","description":"Initial message for threading test","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:19:51.704324-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-gjla","depends_on_id":"bd-f5cc","type":"duplicates","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} -{"id":"bd-8g8","title":"Fix G304 potential file inclusion in cmd/bd/tips.go:259","description":"Linting issue: G304: Potential file inclusion via variable (gosec) at cmd/bd/tips.go:259:18. Error: if data, err := os.ReadFile(settingsPath); err == nil {","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:34:57.189730843-07:00","updated_at":"2025-12-17T23:13:40.534569-08:00","closed_at":"2025-12-17T16:46:11.029837-08:00"} -{"id":"bd-au0.9","title":"Review and document rarely-used commands","description":"Document use cases or consider deprecation for infrequently-used commands.\n\n**Commands to review:**\n1. bd rename-prefix - How often is this used? Document use cases\n2. bd detect-pollution - Consider integrating into bd validate\n3. bd migrate-hash-ids - One-time migration, keep but document as legacy\n\n**For each command:**\n- Document typical use cases\n- Add examples to help text\n- Consider if it should be a subcommand instead\n- Add deprecation warning if appropriate\n\n**Not changing:**\n- duplicates āœ“ (useful for data quality)\n- repair-deps āœ“ (useful for fixing broken refs)\n- restore āœ“ (critical for compacted issues)\n- compact āœ“ (performance feature)\n\n**Deliverable:**\n- Updated help text\n- Documentation in ADVANCED.md\n- Deprecation plan if needed","status":"open","priority":3,"issue_type":"task","created_at":"2025-11-21T21:08:05.588275-05:00","updated_at":"2025-11-21T21:08:05.588275-05:00","dependencies":[{"issue_id":"bd-au0.9","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:08:05.59003-05:00","created_by":"daemon"}]} -{"id":"bd-s0qf","title":"GH#405: Fix prefix parsing with hyphens - multi-hyphen prefixes parsed incorrectly","description":"Fixed: ExtractIssuePrefix was falling back to first-hyphen for word-like suffixes, breaking multi-hyphen prefixes like 'hacker-news' and 'me-py-toolkit'.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:13:56.951359-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-qqc.13","title":"Upgrade beads-mcp to {{version}}","description":"Upgrade the MCP server via pip:\n\n```bash\npip install --upgrade beads-mcp\npip show beads-mcp | grep Version # Verify {{version}}\n```\n\nNote: Restart Claude Code or MCP session to use new version.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:08:04.318233-08:00","updated_at":"2025-12-18T23:09:05.77824-08:00","closed_at":"2025-12-18T23:09:05.77824-08:00","dependencies":[{"issue_id":"bd-qqc.13","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T23:08:04.318709-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.13","depends_on_id":"bd-qqc.11","type":"blocks","created_at":"2025-12-18T23:08:19.927825-08:00","created_by":"daemon"}]} -{"id":"bd-aydr.7","title":"Add integration tests for bd reset command","description":"End-to-end integration tests for the reset command.\n\n## Test Scenarios\n\n### Basic reset\n1. Init beads, create some issues\n2. Run bd reset --force\n3. Verify .beads/ is fresh, issues gone\n\n### Hard reset\n1. Init beads, create issues, commit\n2. Run bd reset --hard --force \n3. Verify git history has reset commits\n\n### Backup functionality\n1. Init beads, create issues\n2. Run bd reset --backup --force\n3. Verify backup exists with correct contents\n4. Verify main .beads/ is reset\n\n### Dry run\n1. Init beads, create issues\n2. Run bd reset --dry-run\n3. Verify nothing changed\n\n### Confirmation prompt\n1. Init beads\n2. Run bd reset (no --force)\n3. Verify prompts for confirmation\n4. Test both y and n responses\n\n## Location\ntests/integration/reset_test.go or similar","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:58.479282+11:00","updated_at":"2025-12-13T06:24:29.561908-08:00","closed_at":"2025-12-13T10:15:59.221637+11:00","dependencies":[{"issue_id":"bd-aydr.7","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:58.479686+11:00","created_by":"daemon"},{"issue_id":"bd-aydr.7","depends_on_id":"bd-aydr.4","type":"blocks","created_at":"2025-12-13T08:45:11.15972+11:00","created_by":"daemon"}]} -{"id":"bd-bwk2","title":"Centralize error handling patterns in storage layer","description":"80+ instances of inconsistent error handling across sqlite.go with mix of %w, %v, and no wrapping.\n\nLocation: internal/storage/sqlite/sqlite.go (throughout)\n\nProblem:\n- Some use fmt.Errorf(\"op failed: %w\", err) - correct wrapping\n- Some use fmt.Errorf(\"op failed: %v\", err) - loses error chain\n- Some return err directly - no context\n- Hard to debug production issues\n- Can't distinguish error types\n\nSolution: Create internal/storage/sqlite/errors.go:\n- Define sentinel errors (ErrNotFound, ErrInvalidID, etc.)\n- Create wrapDBError(op string, err error) helper\n- Convert sql.ErrNoRows to ErrNotFound\n- Always wrap with operation context\n\nImpact: Lost error context; inconsistent messages; hard to debug\n\nEffort: 5-7 hours","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-16T14:51:54.974909-08:00","updated_at":"2025-11-16T14:51:54.974909-08:00"} -{"id":"bd-an4s","title":"Version Bump: 0.32.1","description":"Release checklist for version 0.32.1. Patch release with MCP output control params and pin field fix.","status":"open","priority":1,"issue_type":"epic","created_at":"2025-12-20T21:53:01.315592-08:00","updated_at":"2025-12-20T21:53:01.315592-08:00"} -{"id":"bd-pgcs","title":"Clean up orphaned child issues (bd-cb64c226.*, bd-cbed9619.*)","description":"## Problem\n\nEvery bd command shows warnings about 12 orphaned child issues:\n- bd-cb64c226.1, .6, .8, .9, .10, .12, .13\n- bd-cbed9619.1, .2, .3, .4, .5\n\nThese are hierarchical IDs (parent.child format) where the parent issues no longer exist.\n\n## Impact\n\n- Clutters output of every bd command\n- Confusing for users\n- Indicates incomplete cleanup of deleted parent issues\n\n## Proposed Solution\n\n1. Delete the orphaned issues since their parents no longer exist:\n ```bash\n bd delete bd-cb64c226.1 bd-cb64c226.6 bd-cb64c226.8 ...\n ```\n\n2. Or convert them to top-level issues if they contain useful content\n\n## Investigation Needed\n\n- What were the parent issues bd-cb64c226 and bd-cbed9619?\n- Why were they deleted without their children?\n- Should bd delete cascade to children automatically?","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T23:06:17.240571-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-tbz3","title":"bd init UX Improvements","description":"bd init leaves users with incomplete setup, requiring manual bd doctor --fix. Issues found: (1) git hooks not installed if user declines prompt, (2) no auto-migration when CLI is upgraded, (3) stale merge driver configs from old versions. Fix by making bd init more robust with better defaults and auto-migration.","status":"open","priority":1,"issue_type":"epic","created_at":"2025-11-21T23:16:00.333543-08:00","updated_at":"2025-11-21T23:16:37.811233-08:00"} -{"id":"bd-qqc.5","title":"Commit release v{{version}}","description":"Stage and commit the version bump:\n\n```bash\ngit add cmd/bd/version.go cmd/bd/info.go CHANGELOG.md\ngit commit -m \"release: v{{version}}\"\n```\n\nDo NOT push yet - tag first.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T13:00:04.097628-08:00","updated_at":"2025-12-18T23:34:18.630946-08:00","closed_at":"2025-12-18T22:41:41.864839-08:00","dependencies":[{"issue_id":"bd-qqc.5","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T13:00:04.098265-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.5","depends_on_id":"bd-qqc.4","type":"blocks","created_at":"2025-12-18T13:01:02.275008-08:00","created_by":"stevey"}]} -{"id":"bd-2ep8","title":"Update CHANGELOG.md with release notes","description":"Add meaningful release notes to CHANGELOG.md describing what changed in 0.30.7","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649053-08:00","updated_at":"2025-12-19T22:57:31.69559-08:00","closed_at":"2025-12-19T22:57:31.69559-08:00","dependencies":[{"issue_id":"bd-2ep8","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.650816-08:00","created_by":"stevey"},{"issue_id":"bd-2ep8","depends_on_id":"bd-rupw","type":"blocks","created_at":"2025-12-19T22:56:48.651136-08:00","created_by":"stevey"}]} -{"id":"bd-jgxi","title":"Auto-migrate database on CLI version bump","description":"When CLI is upgraded (e.g., 0.24.0 ā†’ 0.24.1), database version becomes stale. Add auto-migration in PersistentPreRun or daemon startup. Check dbVersion != CLIVersion and run bd migrate automatically. Fixes recurring UX issue where bd doctor shows version mismatch after every CLI upgrade.","status":"closed","issue_type":"feature","created_at":"2025-11-21T23:16:09.004619-08:00","updated_at":"2025-12-17T23:13:40.535453-08:00","closed_at":"2025-12-17T17:15:43.605762-08:00","dependencies":[{"issue_id":"bd-jgxi","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:09.005513-08:00","created_by":"daemon"}]} -{"id":"bd-x36g","title":"Thread Test 2","description":"Testing direct mode","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:16.470631-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} -{"id":"bd-90v","title":"bd prime: AI context loading and Claude Code integration","description":"Implement `bd prime` command and Claude Code hooks for context recovery. Hooks work with BOTH MCP server and CLI approaches - they solve the context memory problem (keeping bd workflow fresh after compaction) not the tool access problem (MCP vs CLI).","status":"open","priority":2,"issue_type":"epic","created_at":"2025-11-11T23:31:12.119012-08:00","updated_at":"2025-11-12T00:11:07.743189-08:00"} -{"id":"bd-7h7","title":"bd init should stop running daemon to avoid stale cache","description":"When running bd init, any running daemon continues with stale cached data, causing bd stats and other commands to show old counts.\n\nRepro:\n1. Have daemon running with 788 issues cached\n2. Clean JSONL to 128 issues, delete db, run bd init\n3. bd stats still shows 788 (daemon cache)\n4. Must manually run bd daemon --stop\n\nFix: bd init should automatically stop any running daemon before reinitializing.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T13:26:47.117226-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-kwro.3","title":"Graph Link: relates_to for knowledge graph","description":"Implement relates_to link type for loose associations.\n\nNew command:\n- bd relate \u003cid1\u003e \u003cid2\u003e - creates bidirectional relates_to link\n\nQuery support:\n- bd show \u003cid\u003e --related shows related issues\n- bd list --related-to \u003cid\u003e\n\nStorage:\n- relates_to stored as JSON array of issue IDs\n- Consider: separate junction table for efficiency at scale?\n\nThis enables 'see also' connections without blocking or hierarchy.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:30.793115-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-dhza","title":"Reduce global state in cmd/bd/main.go (25+ variables)","description":"Code health review found main.go has 25+ global variables (lines 57-112):\n\n- dbPath, actor, store, jsonOutput, daemonClient, noDaemon\n- rootCtx, rootCancel, autoFlushEnabled\n- isDirty (marked 'USED BY LEGACY CODE')\n- needsFullExport (marked 'USED BY LEGACY CODE')\n- flushTimer (marked 'DEPRECATED')\n- flushMutex, storeMutex, storeActive\n- flushFailureCount, lastFlushError, flushManager\n- skipFinalFlush, autoImportEnabled\n- versionUpgradeDetected, previousVersion, upgradeAcknowledged\n\nImpact:\n- Hard to test individual commands\n- Race conditions possible\n- State leakage between commands\n\nFix: Move toward dependency injection. Remove deprecated variables. Consider cmd/bd/internal package.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:29.643293-08:00","updated_at":"2025-12-16T18:17:29.643293-08:00","dependencies":[{"issue_id":"bd-dhza","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.492112-08:00","created_by":"daemon"}]} -{"id":"bd-8hy","title":"Kill running daemons","description":"Stop all bd daemons before release:\n\n```bash\npkill -f 'bd.*daemon' || true\nsleep 1\npgrep -lf 'bd.*daemon' # Should show nothing\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:58.255478-08:00","updated_at":"2025-12-18T22:43:55.394966-08:00","closed_at":"2025-12-18T22:43:55.394966-08:00","dependencies":[{"issue_id":"bd-8hy","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.23168-08:00","created_by":"daemon"}]} -{"id":"bd-bxha","title":"Default to YES for git hooks and merge driver installation","description":"Currently bd init prompts user to install git hooks and merge driver, but setup is incomplete if user declines. Change to install by default unless --skip-hooks or --skip-merge-driver flags are passed. Better safe defaults. If installation fails, warn user and suggest bd doctor --fix.","status":"open","priority":1,"issue_type":"feature","created_at":"2025-11-21T23:16:10.172238-08:00","updated_at":"2025-11-21T23:16:28.369137-08:00","dependencies":[{"issue_id":"bd-bxha","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:10.173034-08:00","created_by":"daemon"}]} -{"id":"bd-y4vz","title":"Work on beads-eub: Consolidated context tool for MCP serv...","description":"Work on beads-eub: Consolidated context tool for MCP server (GH#636). Merge set_context, where_am_i, init into single 'context' tool. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:58.527144-08:00","updated_at":"2025-12-20T00:49:51.929597-08:00","closed_at":"2025-12-19T23:31:11.906952-08:00"} -{"id":"bd-wc2","title":"Test body-file","description":"This is a test description from a file.\n\nIt has multiple lines.\n","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T17:27:20.508724-08:00","updated_at":"2025-12-17T17:28:33.83142-08:00","closed_at":"2025-12-17T17:28:33.83142-08:00"} -{"id":"bd-8e0q","title":"Merge: beads-ocs","description":"branch: polecat/valkyrie\ntarget: main\nsource_issue: beads-ocs\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:24:45.281478-08:00","updated_at":"2025-12-19T23:24:45.281478-08:00"} -{"id":"bd-iq7n","title":"Audit and fix JSONL filename mismatches across all repo clones","description":"## Problem\n\nMultiple clones of repos are configured with different JSONL filenames (issues.jsonl vs beads.jsonl), causing:\n1. JSONL files to be resurrected after deletion (one clone pushes issues.jsonl, another pushes beads.jsonl)\n2. Agents unable to see issues filed by other agents after sync\n3. Merge conflicts and data inconsistencies\n\n## Root Cause\n\nWhen repos were \"bd doctored\" or initialized at different times, some got issues.jsonl (old default) and others got beads.jsonl (Beads repo specific). These clones push their respective files, creating duplicates.\n\n## Task\n\nScan all repo clones under ~/src/ (1-2 levels deep) and standardize their JSONL configuration.\n\n### Step 1: Find all beads-enabled repos\n\n```bash\n# Find all directories named 'beads' at levels 1-2 under ~/src/\nfind ~/src -maxdepth 2 -type d -name beads\n```\n\n### Step 2: For each repo found, check configuration\n\nFor each directory from Step 1, check:\n- Does `.beads/metadata.json` exist?\n- What is the `jsonl_export` value?\n- What JSONL files actually exist in `.beads/`?\n- Are there multiple JSONL files (problem!)?\n\n### Step 3: Create audit report\n\nGenerate a report showing:\n```\nRepo Path | Config | Actual Files | Status\n----------------------------------- | ------------- | ---------------------- | --------\n~/src/beads | beads.jsonl | beads.jsonl | OK\n~/src/dave/beads | issues.jsonl | issues.jsonl | MISMATCH\n~/src/emma/beads | issues.jsonl | issues.jsonl, beads.jsonl | DUPLICATE!\n```\n\n### Step 4: Determine canonical name for each repo\n\nFor repos that are the SAME git repository (check `git remote -v`):\n- Group them together\n- Determine which JSONL filename should be canonical (majority wins, or beads.jsonl for the beads repo itself)\n- List which clones need to be updated\n\n### Step 5: Generate fix script\n\nCreate a script that for each mismatched clone:\n1. Updates `.beads/metadata.json` to use the canonical name\n2. If JSONL file needs renaming: `git mv .beads/old.jsonl .beads/new.jsonl`\n3. Removes any duplicate JSONL files: `git rm .beads/duplicate.jsonl`\n4. Commits the change\n5. Syncs: `bd sync`\n\n### Expected Output\n\n1. Audit report showing all repos and their config status\n2. List of repos grouped by git remote (same repository)\n3. Fix script or manual instructions for standardizing each repo\n4. Verification that after fixes, all clones of the same repo use the same JSONL filename\n\n### Edge Cases\n\n- Handle repos without metadata.json (use default discovery)\n- Handle repos with no git remote (standalone/local)\n- Handle repos that are not git repositories\n- Don't modify repos with uncommitted changes (warn instead)\n\n### Success Criteria\n\n- All clones of the same git repository use the same JSONL filename\n- No duplicate JSONL files in any repo\n- All configurations documented in metadata.json\n- bd doctor passes on all repos","status":"closed","issue_type":"task","created_at":"2025-11-21T23:58:35.044762-08:00","updated_at":"2025-12-17T23:13:40.531403-08:00","closed_at":"2025-12-17T16:50:59.510972-08:00"} -{"id":"bd-2q6d","title":"Beads commands operate on stale database without warning","description":"All beads read operations should validate database is in sync with JSONL before proceeding.\n\n**Current Behavior:**\n- Commands can query/read from stale database\n- Only mutation operations (like 'bd sync') check if JSONL is newer\n- User gets incorrect results without realizing database is out of sync\n\n**Expected Behavior:**\n- All beads commands should have pre-flight check for database freshness\n- If JSONL is newer than database, refuse to operate with error: \"Database out of sync. Run 'bd import' first.\"\n- Same safety check that exists for 'bd sync' should apply to ALL operations\n\n**Impact:**\n- Users make decisions based on incomplete/outdated data\n- Silent failures lead to confusion (e.g., thinking issues don't exist when they do)\n- Similar to running git commands on stale repo without being warned to pull\n\n**Example:**\n- Searched for bd-g9eu issue file: not found\n- Issue exists in .beads/issues.jsonl (in git)\n- Database was stale, but no warning was given\n- Led to incorrect conclusion that issue was already closed/deleted","notes":"## Implementation Complete\n\n**Phase 1: Created staleness check (cmd/bd/staleness.go)**\n- ensureDatabaseFresh() function checks JSONL mtime vs last_import_time\n- Returns error with helpful message when database is stale\n- Auto-skips in daemon mode (daemon has auto-import)\n\n**Phase 2: Added to all read commands**\n- list, show, ready, status, stale, info, duplicates, validate\n- Check runs before database queries in direct mode\n- Daemon mode already protected via checkAndAutoImportIfStale()\n\n**Phase 3: Code Review Findings**\nSee follow-up issues:\n- bd-XXXX: Add warning when staleness check errors\n- bd-YYYY: Improve CheckStaleness error handling\n- bd-ZZZZ: Refactor redundant daemon checks (low priority)\n\n**Testing:**\n- Build successful: go build ./cmd/bd\n- Binary works: ./bd --version\n- Ready for manual testing\n\n**Next Steps:**\n1. Test with stale database scenario\n2. Implement review improvements\n3. Close issue when tests pass","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-20T19:33:40.019297-05:00","updated_at":"2025-12-17T23:13:40.535149-08:00","closed_at":"2025-12-17T19:11:12.982639-08:00"} -{"id":"bd-qqc.1","title":"Update version to {{version}} in version.go","description":"Edit cmd/bd/version.go line 17:\n\n```go\nVersion = \"{{version}}\"\n```\n\nVerify with: `grep 'Version =' cmd/bd/version.go`","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:13.887087-08:00","updated_at":"2025-12-18T23:34:18.630067-08:00","closed_at":"2025-12-18T22:41:41.82664-08:00","dependencies":[{"issue_id":"bd-qqc.1","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:13.887655-08:00","created_by":"stevey"}]} -{"id":"bd-fom","title":"Remove all deletions.jsonl code except migration","description":"There's deletions manifest code spread across the entire codebase that should have been removed after tombstone migration:\n\nFiles with deletions code (non-migration):\n- internal/deletions/ - entire package\n- cmd/bd/sync.go - 25+ references, auto-compact, sanitize\n- cmd/bd/delete.go - dual-writes to deletions.jsonl\n- internal/importer/importer.go - checks deletions manifest\n- internal/syncbranch/worktree.go - merges deletions.jsonl\n- cmd/bd/doctor/fix/sync.go - cleanupDeletionsManifest\n- cmd/bd/doctor/fix/deletions.go - HydrateDeletionsManifest\n- cmd/bd/integrity.go - checks deletions for data loss\n- cmd/bd/deleted.go - entire command\n- cmd/bd/compact.go - pruneDeletionsManifest\n- cmd/bd/doctor.go - checkDeletionsManifest\n- Plus many more\n\nAction: Aggressively remove all non-migration deletions code. Tombstones are the only deletion mechanism now.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T13:29:04.960863-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-qqc","title":"Release v{{version}}","description":"Version bump workflow for beads release {{version}}.\n\n## Variables\n- `{{version}}` - The new version number (e.g., 0.31.0)\n- `{{date}}` - Release date (YYYY-MM-DD format)\n\n## Workflow Steps\n1. Kill running daemons\n2. Run tests and linting\n3. Bump version in all files (10 files total)\n4. Update cmd/bd/info.go with release notes\n5. Commit and push version bump\n6. Create and push git tag\n7. Update Homebrew formula\n8. Upgrade local Homebrew installation\n9. Verify installation\n\n## Files Updated by bump-version.sh\n- cmd/bd/version.go\n- .claude-plugin/plugin.json\n- .claude-plugin/marketplace.json\n- integrations/beads-mcp/pyproject.toml\n- integrations/beads-mcp/src/beads_mcp/__init__.py\n- README.md\n- npm-package/package.json\n- cmd/bd/templates/hooks/* (4 files)\n- CHANGELOG.md\n\n## Manual Step Required\n- cmd/bd/info.go - Add versionChanges entry with release notes","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-18T12:59:00.610371-08:00","updated_at":"2025-12-20T17:59:26.263219-08:00","closed_at":"2025-12-20T01:18:46.71424-08:00"} -{"id":"bd-rupw","title":"Run bump-version.sh 0.30.7","description":"Run ./scripts/bump-version.sh 0.30.7 to update version in all files","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649647-08:00","updated_at":"2025-12-19T22:57:31.512956-08:00","closed_at":"2025-12-19T22:57:31.512956-08:00","dependencies":[{"issue_id":"bd-rupw","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.653475-08:00","created_by":"stevey"}]} -{"id":"bd-pbh.16","title":"Update Homebrew formula","description":"After GoReleaser completes, the Homebrew tap should be auto-updated.\n\nIf manual update needed:\n```bash\n./scripts/update-homebrew.sh v0.30.4\n```\n\nOr manually update steveyegge/homebrew-beads with new SHA256.\n\nVerify:\n```bash\nbrew update\nbrew info beads\n```\n","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.100213-08:00","updated_at":"2025-12-17T21:46:46.341942-08:00","closed_at":"2025-12-17T21:46:46.341942-08:00","dependencies":[{"issue_id":"bd-pbh.16","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.100541-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.16","depends_on_id":"bd-pbh.13","type":"blocks","created_at":"2025-12-17T21:19:11.312625-08:00","created_by":"daemon"}]} -{"id":"bd-4hn","title":"wish: list \u0026 ready show issues as hierarchy tree","description":"`bd ready` and `bd list` just show a flat list, and it's up to the reader to parse which ones are dependent or sub-issues of others. It would be much easier to understand if they were shown in a tree format","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-08T06:38:24.016316945-07:00","updated_at":"2025-12-08T06:39:04.065882225-07:00"} -{"id":"bd-kwro","title":"Beads Messaging \u0026 Knowledge Graph (v0.30.2)","description":"Add messaging semantics and extended graph links to Beads, enabling it to serve as\nthe universal substrate for knowledge work - issues, messages, documents, and threads\nas nodes in a queryable graph.\n\n## Motivation\n\nGas Town (GGT) needs inter-agent communication. Rather than a separate mail system,\ncollapse messaging into Beads - one system, one sync, one query interface, all in git.\n\nThis also positions Beads as a foundation for:\n- Company-wide issue tracking (like Notion)\n- Threaded conversations (like Reddit/Slack)\n- Knowledge graphs with loose associations\n- Arbitrary workflow UIs built on top\n\n## New Issue Type\n\n**message** - ephemeral communication between workers\n- sender: who sent it\n- assignee: recipient\n- priority: P0 (urgent) to P4 (routine)\n- status: open (unread) -\u003e closed (read)\n- ephemeral: true = can be bulk-deleted after swarm\n\n## New Graph Links\n\n**replies_to** - conversation threading\n- Messages reply to messages\n- Enables Reddit-style nested threads\n- Different from parent_id (not hierarchy, its conversation flow)\n\n**relates_to** - loose see also associations\n- Bidirectional knowledge graph edges\n- Not blocking, not hierarchical, just related\n- Enables discovery and traversal\n\n**duplicates** - deduplication at scale\n- Mark issue B as duplicate of canonical issue A\n- Close B, link to A\n- Essential for large issue databases\n\n**supersedes** - version chains\n- Design Doc v2 supersedes Design Doc v1\n- Track evolution of artifacts\n\n## New Fields (optional, any issue type)\n\n- sender (string) - who created this (for messages)\n- ephemeral (boolean) - can be bulk-deleted when closed\n\n## New Commands\n\nMessaging:\n- bd mail send \u003crecipient\u003e -s Subject -m Body\n- bd mail inbox (list open messages for me)\n- bd mail read \u003cid\u003e (show message content)\n- bd mail ack \u003cid\u003e (mark as read/close)\n- bd mail reply \u003cid\u003e -m Response (reply to thread)\n\nGraph links:\n- bd relate \u003cid1\u003e \u003cid2\u003e (create relates_to link)\n- bd duplicate \u003cid\u003e --of \u003ccanonical\u003e (mark as duplicate)\n- bd supersede \u003cid\u003e --with \u003cnew\u003e (mark superseded)\n\nCleanup:\n- bd cleanup --ephemeral (delete closed ephemeral issues)\n\n## Identity Configuration\n\nWorkers need identity for sender field:\n- BEADS_IDENTITY env var\n- Or .beads/config.json: identity field\n\n## Hooks (for GGT integration)\n\nBeads as platform - extensible without knowing about GGT.\nHook files in .beads/hooks/:\n- on_create (runs after bd create)\n- on_update (runs after bd update)\n- on_close (runs after bd close)\n- on_message (runs after bd mail send)\n\nGGT registers hooks to notify daemons of new messages.\n\n## Schema Changes (Migration Required)\n\nAdd to issue schema:\n- type: message (new valid type)\n- sender: string (optional)\n- ephemeral: boolean (optional)\n- replies_to: string (issue ID, optional)\n- relates_to: []string (issue IDs, optional)\n- duplicates: string (canonical issue ID, optional)\n- superseded_by: string (new issue ID, optional)\n\nMigration adds fields as optional - existing beads unchanged.\n\n## Success Criteria\n\n1. bd mail send/inbox/read/ack/reply work end-to-end\n2. replies_to creates proper thread structure\n3. relates_to, duplicates, supersedes links queryable\n4. Hooks fire on create/update/close/message\n5. Identity configurable via env or config\n6. Migration preserves all existing data\n7. All new features have tests","status":"tombstone","issue_type":"epic","created_at":"2025-12-16T03:00:53.912223-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"epic"} -{"id":"bd-7yg","title":"Git merge driver uses invalid placeholders (%L, %R instead of %A, %B)","description":"## Problem\n\nThe beads git merge driver is configured with invalid Git placeholders:\n\n```\ngit config merge.beads.driver \"bd merge %A %O %L %R\"\n```\n\nGit doesn't recognize `%L` or `%R` as valid merge driver placeholders. The valid placeholders are:\n- `%O` = base (common ancestor)\n- `%A` = current version (ours)\n- `%B` = other version (theirs)\n\n## Impact\n\n- Affects ALL users when they have `.beads/beads.jsonl` merge conflicts\n- Automatic JSONL merge fails with error: \"error reading left file: failed to open file: open 7: no such file or directory\"\n- Users must manually resolve conflicts instead of getting automatic merge\n\n## Root Cause\n\nThe `bd init` command (or wherever the merge driver is configured) is using non-standard placeholders. When Git encounters `%L` and `%R`, it either passes them literally or interprets them incorrectly.\n\n## Fix\n\nUpdate the merge driver configuration to:\n```\ngit config merge.beads.driver \"bd merge %A %O %A %B\"\n```\n\nWhere:\n- 1st `%A` = output file (current file, will be overwritten)\n- `%O` = base (common ancestor)\n- 2nd `%A` = left/current version\n- `%B` = right/other version\n\n## Action Items\n\n1. Fix `bd init` (or equivalent setup command) to use correct placeholders\n2. Add migration/warning for existing users with misconfigured merge driver\n3. Update documentation with correct merge driver setup\n4. Consider adding validation when `bd init` is run","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-21T19:51:55.747608-05:00","updated_at":"2025-12-17T23:13:40.532368-08:00","closed_at":"2025-12-17T17:24:52.678668-08:00"} -{"id":"bd-r6a.3","title":"Create version-bump template as native Beads","description":"Migrate the version-bump workflow from YAML to a native Beads template:\n\n1. Create epic with template label: Release {{version}}\n2. Create child tasks for each step (update version files, changelog, commit, push, publish)\n3. Set up dependencies between tasks\n4. Add verification commands in task descriptions\n\nThis serves as both migration and validation of the new system.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T22:43:40.694931-08:00","updated_at":"2025-12-18T17:42:26.001149-08:00","closed_at":"2025-12-18T13:02:09.039457-08:00","dependencies":[{"issue_id":"bd-r6a.3","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:40.695392-08:00","created_by":"daemon"},{"issue_id":"bd-r6a.3","depends_on_id":"bd-r6a.2","type":"blocks","created_at":"2025-12-17T22:44:03.311902-08:00","created_by":"daemon"}]} -{"id":"bd-vgi5","title":"Push version bump to GitHub","description":"git push origin main - triggers CI but no release yet.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:05.363604-08:00","updated_at":"2025-12-18T22:46:57.50777-08:00","closed_at":"2025-12-18T22:46:57.50777-08:00","dependencies":[{"issue_id":"bd-vgi5","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.87736-08:00","created_by":"daemon"},{"issue_id":"bd-vgi5","depends_on_id":"bd-3ggb","type":"blocks","created_at":"2025-12-18T22:43:21.078208-08:00","created_by":"daemon"}]} -{"id":"bd-r6a.1","title":"Revert/remove YAML workflow system","description":"Revert the recent commit and remove all YAML workflow code:\n\n1. `git revert aae8407a` (the commit we just pushed with workflow fixes)\n2. Remove `cmd/bd/templates/workflows/` directory\n3. Remove workflow.go or gut it to minimal stub\n4. Remove WorkflowTemplate types from internal/types/workflow.go\n5. Remove any workflow-related RPC handlers\n\nKeep only minimal scaffolding if needed for the new template system.","status":"closed","issue_type":"task","created_at":"2025-12-17T22:42:07.339684-08:00","updated_at":"2025-12-17T22:46:08.606088-08:00","closed_at":"2025-12-17T22:46:08.606088-08:00","dependencies":[{"issue_id":"bd-r6a.1","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:42:07.340117-08:00","created_by":"daemon"}]} -{"id":"bd-2oo","title":"Edge Schema Consolidation: Unify all edges in dependencies table","description":"Consolidate all edge types into the dependency table per decision 004.\n\n## Changes\n- Add metadata column to dependencies table\n- Add thread_id column for conversation grouping\n- Remove redundant Issue fields: replies_to, relates_to, duplicate_of, superseded_by\n- Update all code to use dependencies API\n- Migration script for existing data\n- JSONL format change (breaking)\n\nReference: ~/gt/hop/decisions/004-edge-schema-consolidation.md","status":"closed","issue_type":"epic","created_at":"2025-12-18T02:01:48.785558-08:00","updated_at":"2025-12-18T02:49:10.61237-08:00","closed_at":"2025-12-18T02:49:10.61237-08:00"} -{"id":"bd-gocx","title":"Run bump-version.sh 0.32.1","description":"Execute ./scripts/bump-version.sh 0.32.1 to update all version references","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:18.470174-08:00","updated_at":"2025-12-20T21:54:54.500836-08:00","closed_at":"2025-12-20T21:54:54.500836-08:00","dependencies":[{"issue_id":"bd-gocx","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:18.471793-08:00","created_by":"daemon"},{"issue_id":"bd-gocx","depends_on_id":"bd-x3j8","type":"blocks","created_at":"2025-12-20T21:53:29.688436-08:00","created_by":"daemon"}]} -{"id":"bd-o55a","title":"GH#509: bd doesn't find .beads when running from nested worktrees","description":"When worktrees are nested under main repo (.worktrees/feature/), bd stops at worktree git root instead of continuing to find .beads in parent. See GitHub issue #509 for detailed fix suggestion.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:20.281591-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-2oo.2","title":"Remove redundant edge fields from Issue struct","description":"Remove from Issue struct:\n- RepliesTo -\u003e dependency with type replies-to\n- RelatesTo -\u003e dependencies with type relates-to \n- DuplicateOf -\u003e dependency with type duplicates\n- SupersededBy -\u003e dependency with type supersedes\n\nKeep: Sender, Ephemeral (these are attributes, not relationships)","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:00.891206-08:00","updated_at":"2025-12-18T02:49:10.584381-08:00","closed_at":"2025-12-18T02:49:10.584381-08:00","dependencies":[{"issue_id":"bd-2oo.2","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:00.891655-08:00","created_by":"daemon"}]} -{"id":"bd-7di","title":"worktree: any bd command is slow","description":"in a git worktree any bd command is slow, with a 2-3s pause before any results are shown. The identical command with `--no-daemon` is near instant.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-05T15:33:42.924618693-07:00","updated_at":"2025-12-05T15:33:42.924618693-07:00"} -{"id":"bd-hzvz","title":"Update info.go versionChanges","description":"Add entry to versionChanges in cmd/bd/info.go with agent-actionable changes for 0.30.7","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649359-08:00","updated_at":"2025-12-19T22:57:31.604229-08:00","closed_at":"2025-12-19T22:57:31.604229-08:00","dependencies":[{"issue_id":"bd-hzvz","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.652068-08:00","created_by":"stevey"},{"issue_id":"bd-hzvz","depends_on_id":"bd-2ep8","type":"blocks","created_at":"2025-12-19T22:56:48.652376-08:00","created_by":"stevey"}]} -{"id":"bd-dyy","title":"Review PR #513: fix hooks install docs","description":"Review and merge PR #513 from aspiers. This PR fixes incorrect docs for how to install git hooks - updates README to use bd hooks install instead of removed install.sh. Simple 1-line change. URL: https://github.com/anthropics/beads/pull/513","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:15:14.838772+11:00","updated_at":"2025-12-13T07:07:19.718544-08:00","closed_at":"2025-12-13T07:07:19.718544-08:00"} -{"id":"bd-bw6","title":"Fix G104 errors unhandled in internal/storage/sqlite/queries.go:1181","description":"Linting issue: G104: Errors unhandled (gosec) at internal/storage/sqlite/queries.go:1181:4. Error: rows.Close()","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:09.008444133-07:00","updated_at":"2025-12-17T23:13:40.536627-08:00","closed_at":"2025-12-17T16:46:11.029355-08:00"} -{"id":"bd-qkw9","title":"Run bump-version.sh {{version}}","description":"Run ./scripts/bump-version.sh {{version}} to update version in all files","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:55:58.841424-08:00","updated_at":"2025-12-20T17:59:26.262877-08:00","closed_at":"2025-12-20T01:18:48.99813-08:00","dependencies":[{"issue_id":"bd-qkw9","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:14.786027-08:00","created_by":"daemon"}]} -{"id":"bd-zf5w","title":"bd mail uses git user.name for sender instead of BEADS_AGENT_NAME","description":"When sending mail via `bd mail send`, the sender field in the stored issue uses git config user.name instead of the BEADS_AGENT_NAME environment variable.\n\nReproduction:\n1. Set BEADS_AGENT_NAME=gastown-alpha\n2. Run: bd mail send mayor/ -s 'Test' -m 'Body'\n3. Check the issue.jsonl: sender is 'Steve Yegge' (git user.name) not 'gastown-alpha'\n\nExpected: The sender field should use BEADS_AGENT_NAME when set.\n\nThis breaks the mail system for multi-agent workflows where agents need to identify themselves by their role (polecat, refinery, etc.) rather than the human user's git identity.\n\nRelated: gt mail routing integration with Gas Town","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-20T21:46:33.646746-08:00","updated_at":"2025-12-20T21:46:33.646746-08:00"} -{"id":"bd-tggf","title":"Code Health Review Dec 2025: Technical Debt Cleanup","description":"Epic grouping technical debt identified in the Dec 16, 2025 code health review.\n\n## Overall Health Grade: B (Solid foundation, needs cleanup)\n\n### P1 (High Priority):\n- bd-74w1: Consolidate duplicate path-finding utilities\n- bd-b6xo: Remove/fix ClearDirtyIssues() race condition\n- bd-b3og: Fix TestImportBugIntegration deadlock\n\n### P2 (Medium Priority):\n- bd-05a8: Split large files (doctor.go, sync.go)\n- bd-qioh: Standardize error handling patterns\n- bd-rgyd: Split queries.go (1586 lines)\n- bd-9g1z: Fix/remove TestFindJSONLPathDefault\n\n### P3 (Low Priority):\n- bd-ork0: Add comments to 30+ ignored errors\n- bd-4nqq: Remove dead test code in info_test.go\n- bd-dhza: Reduce global state in main.go\n\n## Key Areas:\n1. Code duplication in path utilities\n2. Large monolithic files (5 files \u003e1000 lines)\n3. Global state (25+ variables, 3 deprecated)\n4. Silent error suppression (30+ instances)\n5. Test gaps and dead test code\n6. Atomicity risks in batch operations","status":"open","priority":2,"issue_type":"epic","created_at":"2025-12-16T18:18:58.115507-08:00","updated_at":"2025-12-16T18:21:50.561709-08:00"} -{"id":"bd-ndye","title":"mergeDependencies uses union instead of 3-way merge","description":"## Critical Bug\n\nThe `mergeDependencies` function in internal/merge/merge.go performs a UNION of left and right dependencies instead of a proper 3-way merge. This causes removed dependencies to be resurrected.\n\n### Root Cause\n\n```go\n// Current code (lines 795-816):\nfunc mergeDependencies(left, right []Dependency) []Dependency {\n // Just unions left + right\n // NEVER REMOVES anything\n // Doesn't even look at base!\n}\n```\n\nAnd `mergeIssue` (line 579) doesn't pass `base`:\n```go\nresult.Dependencies = mergeDependencies(left.Dependencies, right.Dependencies)\n```\n\n### Impact\n\nIf:\n- Base has dependency D\n- Left removes D (intentional)\n- Right still has D (stale)\n\nCurrent: D is in result (resurrection!)\nCorrect: Left removed it, D should NOT be in result\n\nThis breaks Gas Town's workflow and data integrity. Closed means closed.\n\n### Fix\n\nChange `mergeDependencies` to take `base` and do proper 3-way merge:\n- If dep was in base and removed by left ā†’ exclude (left wins)\n- If dep was in base and removed by right ā†’ exclude (right wins)\n- If dep wasn't in base and added by either ā†’ include\n- If dep was in base and both still have it ā†’ include\n\nKey principle: **REMOVALS ARE AUTHORITATIVE**\n\n### Files to Change\n\n1. internal/merge/merge.go:\n - `mergeDependencies(left, right)` ā†’ `mergeDependencies(base, left, right)`\n - `mergeIssue` line 579: pass `base.Dependencies`\n\n### Related\n\nThis also explains why `ProtectLocalExportIDs` in importer is defined but never used - the protection was never actually implemented.","status":"closed","issue_type":"bug","created_at":"2025-12-18T23:15:54.475872-08:00","updated_at":"2025-12-18T23:21:10.709571-08:00","closed_at":"2025-12-18T23:21:10.709571-08:00"} -{"id":"bd-56x","title":"Review PR #514: fix plugin install docs","description":"Review and merge PR #514 from aspiers. This PR fixes incorrect docs for installing Claude Code plugin from source in docs/PLUGIN.md. Clarifies shell vs Claude Code commands and fixes the . vs ./beads argument issue. URL: https://github.com/anthropics/beads/pull/514","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:15:16.865354+11:00","updated_at":"2025-12-13T07:07:19.729213-08:00","closed_at":"2025-12-13T07:07:19.729213-08:00"} -{"id":"bd-kwro.2","title":"Graph Link: replies_to for conversation threading","description":"Implement replies_to link type for message threading.\n\nNew command:\n- bd mail reply \u003cid\u003e -m 'Response' creates a message with replies_to set\n\nQuery support:\n- bd show \u003cid\u003e --thread shows full conversation thread\n- Thread traversal in storage layer\n\nStorage:\n- replies_to column in issues table\n- Index for efficient thread queries\n\nThis enables Reddit-style nested threads where messages reply to other messages.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:25.292728-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-aydr.1","title":"Implement core reset package (internal/reset)","description":"Create the core reset logic in internal/reset/ package.\n\n## Responsibilities\n- ResetOptions struct with all flag options\n- CountImpact() - count issues/tombstones that will be deleted\n- ValidateState() - check .beads/ exists, check git dirty state\n- ExecuteReset() - main reset logic (without CLI concerns)\n- Integrate with daemon killall\n\n## Interface Design\n```go\ntype ResetOptions struct {\n Hard bool // Include git operations (git rm, commit)\n Backup bool // Create backup before reset\n DryRun bool // Preview only, don't execute\n SkipInit bool // Don't re-initialize after reset\n}\n\ntype ResetResult struct {\n IssuesDeleted int\n TombstonesDeleted int\n BackupPath string // if backup was created\n DaemonsKilled int\n}\n\ntype ImpactSummary struct {\n IssueCount int\n OpenCount int\n ClosedCount int\n TombstoneCount int\n HasUncommitted bool // git dirty state\n}\n\nfunc Reset(opts ResetOptions) (*ResetResult, error)\nfunc CountImpact() (*ImpactSummary, error)\nfunc ValidateState() error\n```\n\n## IMPORTANT: CLI vs Core Separation\n- `Force` (skip confirmation) is NOT in ResetOptions - that's a CLI concern\n- Core always executes when called; CLI decides whether to prompt first\n- Keep CLI-agnostic: no prompts, no colored output, no user interaction\n- Return errors for CLI to handle with user-friendly messages\n- Unit testable in isolation\n\n## Dependencies\n- Uses daemon.KillAllDaemons() from internal/daemon/\n- Calls bd init logic after reset (unless SkipInit)","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:50.145364+11:00","updated_at":"2025-12-13T10:13:32.610253+11:00","closed_at":"2025-12-13T09:20:06.184893+11:00","dependencies":[{"issue_id":"bd-aydr.1","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:50.145775+11:00","created_by":"daemon"}]} -{"id":"bd-aydr.3","title":"Add git operations for --hard reset","description":"Implement git integration for hard reset mode.\n\n## Operations Needed\n1. `git rm -rf .beads/*.jsonl` - remove data files from index\n2. `git commit -m 'beads: reset to clean state'` - commit removal\n3. After re-init: `git add .beads/` and commit fresh state\n\n## Edge Cases to Handle\n- Uncommitted changes in .beads/ - warn or error\n- Detached HEAD state - warn, maybe block\n- Git not initialized - skip git ops, warn\n- Git operations fail mid-way - clear error messaging\n\n## Interface\n```go\ntype GitState struct {\n IsRepo bool\n IsDirty bool // uncommitted changes in .beads/\n IsDetached bool // detached HEAD\n Branch string // current branch name\n}\n\nfunc CheckGitState(beadsDir string) (*GitState, error)\nfunc GitRemoveBeads(beadsDir string) error\nfunc GitCommitReset(message string) error\nfunc GitAddAndCommit(beadsDir, message string) error\n```\n\n## Location\n`internal/reset/git.go` - keep with reset package for now\n\nNote: Codebase has no central git package. internal/compact/git.go is compact-specific.\nFuture refactoring could extract shared git utilities, but YAGNI for now.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:52.798312+11:00","updated_at":"2025-12-13T10:13:32.611131+11:00","closed_at":"2025-12-13T09:17:40.785927+11:00","dependencies":[{"issue_id":"bd-aydr.3","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:52.798715+11:00","created_by":"daemon"}]} -{"id":"bd-hkr6","title":"GH#518: Document bd setup command","description":"bd setup is undiscoverable. Add to README/docs. Currently only findable by grepping source. See GitHub issue #518.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:54.664668-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-cbed9619.1","title":"Fix multi-round convergence for N-way collisions","description":"**Summary:** Multi-round collision resolution was identified as a critical issue preventing complete synchronization across distributed clones. The problem stemmed from incomplete final pulls that didn't fully propagate all changes between system instances.\n\n**Key Decisions:**\n- Implement multi-round sync mechanism\n- Ensure bounded convergence (ā‰¤N rounds)\n- Guarantee idempotent import without data loss\n\n**Resolution:** Developed a sync strategy that ensures all clones converge to the same complete set of issues, unblocking the bd-cbed9619 epic and improving distributed system reliability.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T21:22:21.486109-07:00","updated_at":"2025-12-17T23:18:29.111713-08:00","deleted_at":"2025-12-17T23:18:29.111713-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-bgm","title":"Fix unparam unused parameter in cmd/bd/doctor.go:1879","description":"Linting issue: checkGitHooks - path is unused (unparam) at cmd/bd/doctor.go:1879:20. Error: func checkGitHooks(path string) doctorCheck {","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:25.270293252-07:00","updated_at":"2025-12-17T23:13:40.532991-08:00","closed_at":"2025-12-17T16:46:11.026693-08:00"} -{"id":"bd-x3j8","title":"Update info.go versionChanges","description":"Add 0.32.1 entry to versionChanges map in cmd/bd/info.go","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:17.344841-08:00","updated_at":"2025-12-20T21:54:31.906761-08:00","closed_at":"2025-12-20T21:54:31.906761-08:00","dependencies":[{"issue_id":"bd-x3j8","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:17.346736-08:00","created_by":"daemon"},{"issue_id":"bd-x3j8","depends_on_id":"bd-rgd7","type":"blocks","created_at":"2025-12-20T21:53:29.62309-08:00","created_by":"daemon"}]} -{"id":"bd-adoe","title":"Add --hard flag to bd cleanup to permanently cull tombstones before cutoff date","description":"Currently tombstones persist for 30 days before cleanup prunes them. Need an official way to force-cull tombstones earlier than the default TTL, for scenarios like cleaning house after extended absence where resurrection from old clones is not a concern. Proposed: bd cleanup --hard --older-than N to bypass the 30-day tombstone TTL.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:17:31.064914-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} -{"id":"bd-eyrh","title":"šŸ¤ HANDOFF: Review remaining beads PRs","description":"## Current State\nJust merged PR #653 (doctor refactor) and added tests to restore coverage.\n\n## Remaining Open PRs to Review\nRun `gh pr list --repo steveyegge/beads` to see current list. As of handoff:\n\n1. #655 - feat: Linear Integration (jblwilliams)\n2. #651 - feat(audit): agent audit trail (dchichkov)\n3. #648 - Stop init creating redundant @AGENTS.md (maphew)\n4. #646 - fix(unix): handle Statfs field types (jordanhubbard)\n5. #645 - feat: /plan-to-beads Claude Code command (petebytes)\n6. #642, #641, #640 - sync branch fixes (cpdata)\n\n## Review Checklist\n- Check CI status with `gh pr checks \u003cnum\u003e --repo steveyegge/beads`\n- Verify no .beads/ data leaking (we have a hook now)\n- Review code quality\n- Merge good ones, request changes on problematic ones\n\n## Notes\n- User wants us to be proactive about merging good PRs\n- Can add tests ourselves if coverage drops","status":"closed","priority":2,"issue_type":"message","created_at":"2025-12-19T17:44:34.149837-08:00","updated_at":"2025-12-19T23:28:32.428731-08:00","closed_at":"2025-12-19T17:53:20.386937-08:00"} -{"id":"bd-i0rx","title":"Merge: bd-ao0s","description":"branch: polecat/rictus\ntarget: main\nsource_issue: bd-ao0s\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-20T01:13:42.716658-08:00","updated_at":"2025-12-20T01:13:42.716658-08:00"} -{"id":"bd-su45","title":"Protect pinned issues from bd cleanup/compact","description":"Update bd cleanup and bd compact to never delete pinned issues, even if they are closed. Pinned issues should persist indefinitely as reference material.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:46.204783-08:00","updated_at":"2025-12-19T17:43:35.712617-08:00","closed_at":"2025-12-19T00:43:04.06406-08:00","dependencies":[{"issue_id":"bd-su45","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.857586-08:00","created_by":"daemon"},{"issue_id":"bd-su45","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.64582-08:00","created_by":"daemon"}]} -{"id":"bd-8fgn","title":"test hash length","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T13:49:32.113843-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-hw3w","title":"Update info.go versionChanges","description":"Add entry to versionChanges in cmd/bd/info.go with agent-actionable changes for {{version}}","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:01.016558-08:00","updated_at":"2025-12-20T17:59:26.262511-08:00","closed_at":"2025-12-20T01:23:50.3879-08:00","dependencies":[{"issue_id":"bd-hw3w","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:14.941855-08:00","created_by":"daemon"},{"issue_id":"bd-hw3w","depends_on_id":"bd-czss","type":"blocks","created_at":"2025-12-19T22:56:23.219257-08:00","created_by":"daemon"}]} -{"id":"bd-svb5","title":"GH#505: Add bd reset/wipe command","description":"Add command to cleanly reset/wipe beads database. User reports painful manual process to start fresh. See GitHub issue #505.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:03:42.160966-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} -{"id":"bd-ao0s","title":"bd graph crashes with --no-daemon on closed issues","description":"The `bd graph` command panics with nil pointer dereference when using `--no-daemon` flag on an issue with closed children.\n\n**Reproduction:**\n```bash\nbd graph bd-qqc --no-daemon\n# panic: runtime error: invalid memory address or nil pointer dereference\n# in main.computeDependencyCounts\n```\n\n**Stack trace:**\n```\npanic: runtime error: invalid memory address or nil pointer dereference\n[signal SIGSEGV: segmentation violation code=0x2 addr=0x20 pc=0x1010bdfb0]\n\ngoroutine 1 [running]:\nmain.computeDependencyCounts(...)\n /Users/stevey/gt/beads/crew/emma/cmd/bd/graph.go:428\nmain.renderGraph(0x1400033bb80, 0x0)\n /Users/stevey/gt/beads/crew/emma/cmd/bd/graph.go:307 +0x300\n```\n\n**Location:** cmd/bd/graph.go:428 - computeDependencyCounts() not handling nil case","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-18T22:57:36.972585-08:00","updated_at":"2025-12-20T18:12:46.798548-08:00","closed_at":"2025-12-20T18:12:46.798548-08:00"} -{"id":"bd-llfl","title":"Improve test coverage for cmd/bd CLI (26.2% ā†’ 50%)","description":"The main CLI package (cmd/bd) has only 26.2% test coverage. CLI commands should have at least 50% coverage to ensure reliability.\n\nKey areas with low/no coverage:\n- daemon_autostart.go (multiple 0% functions)\n- compact.go (several 0% functions)\n- Various command handlers\n\nCurrent coverage: 26.2%\nTarget coverage: 50%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:03.123341-08:00","updated_at":"2025-12-13T21:01:18.901944-08:00"} -{"id":"bd-3x9o","title":"Merge: bd-by0d","description":"branch: polecat/furiosa\ntarget: main\nsource_issue: bd-by0d\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:21:26.817906-08:00","updated_at":"2025-12-19T23:21:26.817906-08:00"} -{"id":"bd-7b7h","title":"bd sync --merge fails due to chicken-and-egg: .beads/ always dirty","description":"## Problem\n\nWhen sync.branch is configured (e.g., beads-sync), the bd sync workflow creates a chicken-and-egg problem:\n\n1. `bd sync` commits changes to beads-sync via worktree\n2. `bd sync` copies JSONL to main working dir via `copyJSONLToMainRepo()` (sync.go line 364, worktree.go line 678-685)\n3. The copy is NOT committed to main - it just updates the working tree\n4. `bd sync --merge` checks for clean working dir (sync.go line 1547-1548)\n5. `bd sync --merge` FAILS because .beads/issues.jsonl is uncommitted!\n\n## Impact\n\n- sync.branch workflow is fundamentally broken\n- Users cannot periodically merge beads-sync ā†’ main\n- Main branch always shows as dirty\n- Creates confusion about git state\n\n## Root Cause\n\nsync.go:1547-1548:\n```go\nif len(strings.TrimSpace(string(statusOutput))) \u003e 0 {\n return fmt.Errorf(\"main branch has uncommitted changes, please commit or stash them first\")\n}\n```\n\nThis check blocks merge when ANY uncommitted changes exist, including the .beads/ changes that `bd sync` itself created.\n\n## Proposed Fix\n\nOption A: Exclude .beads/ from the clean check in `mergeSyncBranch`:\n```go\n// Check if there are non-beads uncommitted changes\nstatusCmd := exec.CommandContext(ctx, \"git\", \"status\", \"--porcelain\", \"--\", \":!.beads/\")\n```\n\nOption B: Auto-stash .beads/ changes before merge, restore after\n\nOption C: Change the workflow - do not copy JSONL to main working dir, instead always read from worktree\n\n## Files to Modify\n\n- cmd/bd/sync.go:1540-1549 (mergeSyncBranch function)\n- Possibly internal/syncbranch/worktree.go (copyJSONLToMainRepo)","notes":"## Fix Implemented\n\nModified cmd/bd/sync.go mergeSyncBranch function:\n\n1. **Exclude .beads/ from dirty check** (line 1543):\n Changed `git status --porcelain` to `git status --porcelain -- :!.beads/`\n This allows merge to proceed when only .beads/ has uncommitted changes.\n\n2. **Restore .beads/ to HEAD before merge** (lines 1553-1561):\n Added `git checkout HEAD -- .beads/` before merge to prevent\n \"Your local changes would be overwritten by merge\" errors.\n The .beads/ changes are redundant since they came FROM beads-sync.\n\n## Testing\n\n- All cmd/bd sync/merge tests pass\n- All internal/syncbranch tests pass\n- Manual verification needed for full workflow","status":"tombstone","issue_type":"bug","created_at":"2025-12-16T23:06:06.97703-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-cb64c226.13","title":"Audit Current Cache Usage","description":"**Summary:** Comprehensive audit of storage cache usage revealed minimal dependency across server components, with most calls following a consistent pattern. Investigation confirmed cache was largely unnecessary in single-repository daemon architecture.\n\n**Key Decisions:** \n- Remove all cache-related environment variables\n- Delete server struct cache management fields\n- Eliminate cache-specific test files\n- Deprecate req.Cwd routing logic\n\n**Resolution:** Cache system will be completely removed, simplifying server storage access and reducing unnecessary complexity with negligible performance impact.","notes":"AUDIT COMPLETE\n\ngetStorageForRequest() callers: 17 production + 11 test\n- server_issues_epics.go: 8 calls\n- server_labels_deps_comments.go: 4 calls \n- server_export_import_auto.go: 2 calls\n- server_compact.go: 2 calls\n- server_routing_validation_diagnostics.go: 1 call\n- server_eviction_test.go: 11 calls (DELETE entire file)\n\nPattern everywhere: store, err := s.getStorageForRequest(req) ā†’ store := s.storage\n\nreq.Cwd usage: Only for multi-repo routing. Local daemon always serves 1 repo, so routing is unused.\n\nMCP server: Uses separate daemons per repo (no req.Cwd usage found). NOT affected by cache removal.\n\nCache env vars to deprecate:\n- BEADS_DAEMON_MAX_CACHE_SIZE (used in server_core.go:63)\n- BEADS_DAEMON_CACHE_TTL (used in server_core.go:72)\n- BEADS_DAEMON_MEMORY_THRESHOLD_MB (used in server_cache_storage.go:47)\n\nServer struct fields to remove:\n- storageCache, cacheMu, maxCacheSize, cacheTTL, cleanupTicker, cacheHits, cacheMisses\n\nTests to delete:\n- server_eviction_test.go (entire file - 9 tests)\n- limits_test.go cache assertions\n\nSpecial consideration: ValidateDatabase endpoint uses findDatabaseForCwd() outside cache. Verify if used, then remove or inline.\n\nSafe to proceed with removal - cache always had 1 entry in local daemon model.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:19.3723-07:00","updated_at":"2025-12-17T23:18:29.111369-08:00","deleted_at":"2025-12-17T23:18:29.111369-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-dwh","title":"Implement or remove ExpectExit/ExpectStdout verification fields","description":"The Verification struct in internal/types/workflow.go has ExpectExit and ExpectStdout fields that are never used by workflowVerifyCmd. Either implement the functionality or remove the dead fields.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-17T22:23:02.708627-08:00","updated_at":"2025-12-17T22:34:07.300348-08:00","closed_at":"2025-12-17T22:34:07.300348-08:00"} -{"id":"bd-pbh.17","title":"Install 0.30.4 Go binary locally","description":"Rebuild and install the Go binary:\n```bash\ngo install ./cmd/bd\n# OR\nmake install\n```\n\nVerify:\n```bash\nbd --version\n```\n\n\n```verify\nbd --version 2\u003e\u00261 | grep -q '0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.108597-08:00","updated_at":"2025-12-17T21:46:46.352702-08:00","closed_at":"2025-12-17T21:46:46.352702-08:00","dependencies":[{"issue_id":"bd-pbh.17","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.108917-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.17","depends_on_id":"bd-pbh.13","type":"blocks","created_at":"2025-12-17T21:19:11.322091-08:00","created_by":"daemon"}]} -{"id":"bd-cb64c226.6","title":"Verify MCP Server Compatibility","description":"Ensure MCP server works with cache-free daemon","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:56:03.241615-07:00","updated_at":"2025-12-17T23:18:29.109644-08:00","deleted_at":"2025-12-17T23:18:29.109644-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-dsdh","title":"Document sync.branch 'always dirty' working tree behavior","description":"## Context\n\nWhen sync.branch is configured, the .beads/issues.jsonl file in main's working tree is ALWAYS dirty. This is by design:\n\n1. bd sync commits to beads-sync branch (via worktree)\n2. bd sync copies JSONL to main's working tree (so CLI commands work)\n3. This copy is NOT committed to main (to reduce commit noise)\n\nContributors who watch main branch history pushed for sync.branch to avoid constant beads commit noise. But users need to understand the trade-off.\n\n## Documentation Needed\n\nUpdate README.md sync.branch section with:\n\n1. **Clear explanation** of why .beads/ is always dirty on main\n2. **\"Be Zen about it\"** - this is expected, not a bug\n3. **Workflow options:**\n - Accept dirty state, use `bd sync --merge` periodically to snapshot to main\n - Or disable sync.branch if clean working tree is more important\n4. **Shell alias tip** to hide beads from git status:\n ```bash\n alias gs='git status -- \":!.beads/\"'\n ```\n5. **When to merge**: releases, milestones, or periodic snapshots\n\n## Related\n\n- bd-7b7h: Fix that allows bd sync --merge to work with dirty .beads/\n- bd-elqd: Investigation that identified this as expected behavior","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T23:16:12.253559-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-kwro.11","title":"Documentation for messaging and graph links","description":"Document all new features.\n\nFiles to update:\n- README.md - brief mention of messaging capability\n- AGENTS.md - update for AI agents using bd mail\n- docs/messaging.md (new) - full messaging reference\n- docs/graph-links.md (new) - graph link reference\n- CHANGELOG.md - v0.30.2 release notes\n\nTopics to cover:\n- Mail commands with examples\n- Graph link types and use cases\n- Identity configuration\n- Hooks setup for notifications\n- Migration notes","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T03:02:39.548518-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-czss","title":"Update CHANGELOG.md with release notes","description":"Add meaningful release notes to CHANGELOG.md describing what changed in {{version}}","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:55:59.909641-08:00","updated_at":"2025-12-20T17:59:26.262153-08:00","closed_at":"2025-12-20T01:23:51.407302-08:00","dependencies":[{"issue_id":"bd-czss","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:14.862724-08:00","created_by":"daemon"},{"issue_id":"bd-czss","depends_on_id":"bd-qkw9","type":"blocks","created_at":"2025-12-19T22:56:23.145894-08:00","created_by":"daemon"}]} -{"id":"bd-c2xs","title":"Exclude pinned issues from bd blocked","description":"Update bd blocked to exclude pinned issues. Pinned issues are context markers and should not appear in the blocked work list.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:44.684242-08:00","updated_at":"2025-12-18T23:33:44.684242-08:00","dependencies":[{"issue_id":"bd-c2xs","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.521323-08:00","created_by":"daemon"},{"issue_id":"bd-c2xs","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.736681-08:00","created_by":"daemon"}]} -{"id":"bd-pbh.13","title":"Monitor GoReleaser CI job","description":"Watch the GoReleaser action:\nhttps://github.com/steveyegge/beads/actions/workflows/release.yml\n\nShould complete in ~10 minutes and create:\n- GitHub Release with binaries for all platforms\n- Checksums and signatures\n\nCheck status:\n```bash\ngh run list --workflow=release.yml -L 1\ngh run watch # to monitor live\n```\n\nVerify release exists:\n```bash\ngh release view v0.30.4\n```\n\n\n```verify\ngh release view v0.30.4 --json tagName -q .tagName | grep -q 'v0.30.4'\n```","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.074476-08:00","updated_at":"2025-12-17T21:46:46.311506-08:00","closed_at":"2025-12-17T21:46:46.311506-08:00","dependencies":[{"issue_id":"bd-pbh.13","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.074833-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.13","depends_on_id":"bd-pbh.12","type":"blocks","created_at":"2025-12-17T21:19:11.279092-08:00","created_by":"daemon"}]} -{"id":"bd-x1xs","title":"Work on beads-1ra: Add molecules.jsonl as separate catalo...","description":"Work on beads-1ra: Add molecules.jsonl as separate catalog file for template molecules","status":"in_progress","priority":2,"issue_type":"task","created_at":"2025-12-19T20:17:44.840032-08:00","updated_at":"2025-12-19T20:17:44.905944-08:00"} -{"id":"bd-kwro.9","title":"Cleanup: --ephemeral flag","description":"Update bd cleanup to handle ephemeral issues.\n\nNew flag:\n- bd cleanup --ephemeral - deletes all CLOSED issues with ephemeral=true\n\nBehavior:\n- Only deletes if status=closed AND ephemeral=true\n- Respects --dry-run flag\n- Reports count of deleted ephemeral issues\n\nThis allows swarm cleanup to remove transient messages without affecting permanent issues.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T03:02:28.563871-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-r36u","title":"gt mq list shows empty when MRs exist","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-20T01:13:07.561256-08:00","updated_at":"2025-12-20T01:13:07.561256-08:00"} -{"id":"bd-d4jl","title":"Commit and push release","description":"git add -A \u0026\u0026 git commit -m 'chore: bump version to 0.32.1' \u0026\u0026 git push","status":"in_progress","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:21.928138-08:00","updated_at":"2025-12-20T21:55:49.122362-08:00","dependencies":[{"issue_id":"bd-d4jl","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:21.930015-08:00","created_by":"daemon"},{"issue_id":"bd-d4jl","depends_on_id":"bd-tj00","type":"blocks","created_at":"2025-12-20T21:53:29.884457-08:00","created_by":"daemon"}]} -{"id":"bd-pbh.4","title":"Update .claude-plugin/plugin.json to 0.30.4","description":"Update version field in .claude-plugin/plugin.json:\n```json\n\"version\": \"0.30.4\"\n```\n\n\n```verify\njq -e '.version == \"0.30.4\"' .claude-plugin/plugin.json\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.976866-08:00","updated_at":"2025-12-17T21:46:46.23159-08:00","closed_at":"2025-12-17T21:46:46.23159-08:00","dependencies":[{"issue_id":"bd-pbh.4","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.97729-08:00","created_by":"daemon"}]} -{"id":"bd-hlsw","title":"Add sync resilience guardrails for forced pushes and prefix mismatches","description":"Beads can get into unrecoverable sync states when remote forces pushes occur (e.g., rebases) combined with prefix mismatches from multi-worker scenarios. Add detection, prevention, and auto-recovery features to handle this gracefully.","status":"open","priority":2,"issue_type":"epic","created_at":"2025-12-14T10:40:14.872875259-07:00","updated_at":"2025-12-14T10:40:14.872875259-07:00"} -{"id":"bd-zc3","title":"Add --pinned and --no-pinned flags to bd list","description":"Add filtering flags to bd list: --pinned shows only pinned issues, --no-pinned excludes pinned issues. Default behavior shows all issues with a pin indicator.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:29.518028-08:00","updated_at":"2025-12-18T23:33:29.518028-08:00","dependencies":[{"issue_id":"bd-zc3","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.256764-08:00","created_by":"daemon"},{"issue_id":"bd-zc3","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.486361-08:00","created_by":"daemon"}]} -{"id":"bd-thgk","title":"Improve test coverage for internal/compact (18.2% ā†’ 70%)","description":"The compact package has only 18.2% test coverage. This is a core package handling issue compaction and should have at least 70% coverage.\n\nKey functions needing tests:\n- runCompactSingle (0%)\n- runCompactAll (0%)\n- runCompactRPC (0%)\n- runCompactStatsRPC (0%)\n- runCompactAnalyze (0%)\n- runCompactApply (0%)\n- pruneDeletionsManifest (0%)\n\nCurrent coverage: 18.2%\nTarget coverage: 70%","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-13T20:42:58.455767-08:00","updated_at":"2025-12-13T21:01:15.070551-08:00"} -{"id":"bd-y2v","title":"Refactor duplicate JSONL-from-git parsing code","description":"Both readFirstIssueFromGit() in init.go and importFromGit() in autoimport.go have similar code patterns for:\n1. Running git show \u003cref\u003e:\u003cpath\u003e\n2. Scanning the output with bufio.Scanner\n3. Parsing JSON lines\n\nCould be refactored to share a helper like:\n- readJSONLFromGit(gitRef, path string) ([]byte, error)\n- Or a streaming version: streamJSONLFromGit(gitRef, path string) (io.Reader, error)\n\nFiles:\n- cmd/bd/autoimport.go:225-256 (importFromGit)\n- cmd/bd/init.go:1212-1243 (readFirstIssueFromGit)\n\nPriority is low since code duplication is minimal and both functions work correctly.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-05T14:51:18.41124-08:00","updated_at":"2025-12-05T14:51:18.41124-08:00"} -{"id":"bd-in7","title":"Test message","description":"Hello world","status":"closed","priority":2,"issue_type":"message","created_at":"2025-12-17T23:16:13.184946-08:00","updated_at":"2025-12-18T17:42:26.000073-08:00","closed_at":"2025-12-17T23:37:38.563369-08:00"} -{"id":"bd-pe4s","title":"JSON test issue","description":"Line 1\nLine 2\nLine 3","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T16:14:36.969074-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-2wh","title":"Test pinned for stats","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-18T21:47:09.334108-08:00","updated_at":"2025-12-18T21:47:25.17917-08:00","deleted_at":"2025-12-18T21:47:25.17917-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-ncwo","title":"Ghost resurrection: remote status:closed wins during git merge","description":"During bd sync, the 3-way git merge sometimes keeps remote's status:closed instead of local's status:tombstone. This causes ghost issues to resurrect even when tombstones exist.\n\nRoot cause: Git 3-way merge doesn't understand tombstone semantics. If base had closed, local changed to tombstone, and remote has closed, git might keep remote's version.\n\nThe early tombstone check in importer.go only prevents CREATION when tombstones exist in DB. But if applyDeletionsFromMerge hard-deletes the tombstones before import runs (because they're not in the merged result), the check doesn't help.\n\nPotential fixes:\n1. Make tombstones 'win' in the beads merge driver (internal/merge/merge.go)\n2. Don't hard-delete tombstones in applyDeletionsFromMerge if they're in the DB\n3. Export tombstones to a separate file that's not subject to merge\n\nGhost issues: bd-cb64c226.*, bd-cbed9619.*","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T22:01:03.56423-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-b3og","title":"Fix TestImportBugIntegration deadlock in importer_test.go","description":"Code health review found internal/importer/importer_test.go has TestImportBugIntegration skipped with:\n\nTODO: Test hangs due to database deadlock - needs investigation\n\nThis indicates a potential unresolved concurrency issue in the importer. The test has been skipped for an unknown duration.\n\nFix: Investigate the deadlock, fix the underlying issue, and re-enable the test.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T18:17:22.103838-08:00","updated_at":"2025-12-17T23:13:40.529671-08:00","closed_at":"2025-12-17T17:25:26.645901-08:00","dependencies":[{"issue_id":"bd-b3og","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.740642-08:00","created_by":"daemon"}]} -{"id":"bd-20j","title":"sync branch not match config","description":"./bd sync\nā†’ Exporting pending changes to JSONL...\nā†’ No changes to commit\nā†’ Pulling from sync branch 'gh-386'...\nError pulling from sync branch: failed to create worktree: failed to create worktree parent directory: mkdir /var/home/matt/dev/beads/worktree-db-fail/.git: not a directory\nmatt@blufin-framation ~/d/b/worktree-db-fail (worktree-db-fail) [1]\u003e bd config list\n\nConfiguration:\n auto_compact_enabled = false\n compact_batch_size = 50\n compact_model = claude-3-5-haiku-20241022\n compact_parallel_workers = 5\n compact_tier1_days = 30\n compact_tier1_dep_levels = 2\n compact_tier2_commits = 100\n compact_tier2_days = 90\n compact_tier2_dep_levels = 5\n compaction_enabled = false\n issue_prefix = worktree-db-fail\n sync.branch = worktree-db-fail","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-08T06:49:04.449094018-07:00","updated_at":"2025-12-08T06:49:04.449094018-07:00"} -{"id":"bd-elqd","title":"Systematic bd sync stability investigation","description":"## Context\n\nbd sync has chronic instability issues that have persisted since inception:\n- issues.jsonl is always dirty after push\n- bd sync often creates messes requiring manual cleanup\n- Problems escalating despite accumulated bug fixes\n- Workarounds are getting increasingly draconian\n\n## Goal\n\nSystematically observe and diagnose bd sync failures rather than applying band-aid fixes.\n\n## Approach\n\n1. Start fresh session with latest binary (all fixes applied)\n2. Run bd sync and carefully observe what happens\n3. Document exact sequence of events when things go wrong\n4. File specific issues for each discrete problem identified\n5. Track the root causes, not just symptoms\n\n## Test Environment\n\n- Fresh clone or clean state\n- Latest bd binary with all bug fixes\n- Monitor both local and remote JSONL state\n- Check for timing issues, race conditions, merge conflicts\n\n## Success Criteria\n\n- Identify root causes of sync instability\n- Create actionable issues for each problem\n- Eventually achieve stable bd sync (no manual intervention needed)","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T22:57:25.35289-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-4ec8","title":"Widespread double JSON encoding bug in daemon mode RPC calls","description":"Multiple CLI commands had the same double JSON encoding bug found in bd-1048. All commands that called ResolveID via RPC used string(resp.Data) instead of properly unmarshaling the JSON response. This caused IDs to retain JSON quotes (\"bd-1048\" instead of bd-1048), which then got double-encoded when passed to subsequent RPC calls.\n\nAffected commands:\n- bd show (3 instances)\n- bd dep add/remove/tree (5 instances)\n- bd label add/remove/list (3 instances)\n- bd reopen (1 instance)\n\nRoot cause: resp.Data is json.RawMessage (already JSON-encoded), so string() conversion preserves quotes.\n\nFix: Replace all string(resp.Data) with json.Unmarshal(resp.Data, \u0026id) for proper deserialization.\n\nAll commands now tested and working correctly with daemon mode.","status":"closed","issue_type":"bug","created_at":"2025-11-02T22:33:01.632691-08:00","updated_at":"2025-12-17T23:13:40.533631-08:00","closed_at":"2025-12-17T16:26:05.851197-08:00"} -{"id":"bd-haze","title":"Fix beads-9yc: pinned column missing from schema. gt mail...","description":"Fix beads-9yc: pinned column missing from schema. gt mail send fails because some beads DBs lack the pinned column. Add migration to ensure it exists.","status":"in_progress","priority":2,"issue_type":"task","created_at":"2025-12-19T15:05:33.394801-08:00","updated_at":"2025-12-19T15:05:33.524491-08:00"} -{"id":"bd-8v2","title":"Add {{version}} to versionChanges in info.go","description":"Add new entry at TOP of versionChanges in cmd/bd/info.go with release notes from CHANGELOG.md. Must do before bump-version.sh --commit.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:00.482846-08:00","updated_at":"2025-12-18T22:45:21.465817-08:00","closed_at":"2025-12-18T22:45:21.465817-08:00","dependencies":[{"issue_id":"bd-8v2","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.496649-08:00","created_by":"daemon"},{"issue_id":"bd-8v2","depends_on_id":"bd-kyo","type":"blocks","created_at":"2025-12-18T22:43:20.69619-08:00","created_by":"daemon"}]} -{"id":"bd-ykd9","title":"Add bd doctor --fix flag to automatically repair issues","description":"Implement a --fix flag for bd doctor that can automatically repair detected issues.\n\nRequirements:\n- Add --fix flag to bd doctor command\n- Show all fixable issues and prompt for confirmation before applying fixes\n- Organize fix implementations under doctor/fix/\u003ctype_of_fix\u003e.go\n- Each fix type should have its own file (e.g., doctor/fix/hooks.go, doctor/fix/sync.go)\n- Display what will be fixed and ask user to confirm (Y/n) before proceeding\n- Support fixing issues like:\n - Missing or broken git hooks\n - Sync problems with remote\n - File permission issues\n - Any other auto-repairable issues doctor detects\n\nImplementation notes:\n- Maintain separation between detection (existing doctor code) and repair (new fix code)\n- Each fix should be idempotent and safe to run multiple times\n- Provide clear output about what was fixed\n- Log any fixes that fail with actionable error messages","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-14T18:17:48.411264-08:00","updated_at":"2025-11-14T18:17:58.88609-08:00"} -{"id":"bd-4q8","title":"bd cleanup --hard should skip tombstone creation for true permanent deletion","description":"## Problem\n\nWhen using bd cleanup --hard --older-than N --force, the command:\n1. Deletes closed issues older than N days (converting them to tombstones with NOW timestamp)\n2. Then tries to prune tombstones older than N days (finds none because they were just created)\n\nThis leaves the database bloated with fresh tombstones that will not be pruned.\n\n## Expected Behavior\n\nIn --hard mode, the deletion should be permanent without creating tombstones, since the user explicitly requested bypassing sync safety.\n\n## Workaround\n\nManually delete from database: sqlite3 .beads/beads.db 'DELETE FROM issues WHERE status=tombstone'\n\n## Fix Options\n\n1. In --hard mode, use a different delete path that does not create tombstones\n2. After deleting, immediately prune the just-created tombstones regardless of age\n3. Pass a skip_tombstone flag to the delete operation\n\nOption 1 is cleanest - --hard should mean permanent delete without tombstone.","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T01:33:36.580657-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-0kai","title":"Work on beads-ocs: Thin shim hooks to eliminate version d...","description":"Work on beads-ocs: Thin shim hooks to eliminate version drift (GH#615). Replace full hook scripts with thin shims that call bd hooks run. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:57:22.91347-08:00","updated_at":"2025-12-20T00:49:51.926425-08:00","closed_at":"2025-12-19T23:24:08.828172-08:00"} -{"id":"bd-hlsw.3","title":"Auto-recovery mode (bd sync --auto-recover)","description":"Add bd sync --auto-recover flag that: detects problematic sync state, backs up .beads/issues.db with timestamp, rebuilds DB from JSONL atomically, verifies consistency, reports what was fixed. Provides safety valve when sync integrity fails.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-14T10:40:20.599836875-07:00","updated_at":"2025-12-14T10:40:20.599836875-07:00","dependencies":[{"issue_id":"bd-hlsw.3","depends_on_id":"bd-hlsw","type":"parent-child","created_at":"2025-12-14T10:40:20.600435888-07:00","created_by":"daemon"}]} -{"id":"bd-au0.10","title":"Add global verbosity flags (--verbose, --quiet)","description":"Add consistent verbosity controls across all commands.\n\n**Current state:**\n- bd init has --quiet flag\n- No other commands have verbosity controls\n- Debug output controlled by BD_VERBOSE env var\n\n**Proposal:**\nAdd persistent flags:\n- --verbose / -v: Enable debug output\n- --quiet / -q: Suppress non-essential output\n\n**Implementation:**\n- Add to rootCmd.PersistentFlags()\n- Replace BD_VERBOSE checks with flag checks\n- Standardize output levels:\n * Quiet: Errors only\n * Normal: Errors + success messages\n * Verbose: Errors + success + debug info\n\n**Files to modify:**\n- cmd/bd/main.go (add flags)\n- internal/debug/debug.go (respect flags)\n- Update all commands to respect quiet mode\n\n**Testing:**\n- Verify --verbose shows debug output\n- Verify --quiet suppresses normal output\n- Ensure errors always show regardless of mode","status":"open","priority":3,"issue_type":"task","created_at":"2025-11-21T21:08:21.600209-05:00","updated_at":"2025-11-21T21:08:21.600209-05:00","dependencies":[{"issue_id":"bd-au0.10","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:08:21.602557-05:00","created_by":"daemon"}]} +{"id":"bd-cils","title":"Work on beads-2nh: Fix gt spawn --issue to find issues in...","description":"Work on beads-2nh: Fix gt spawn --issue to find issues in rig's beads database. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:47.573854-08:00","updated_at":"2025-12-20T00:49:51.927884-08:00","closed_at":"2025-12-19T23:28:28.605343-08:00"} {"id":"bd-e1085716","title":"bd validate - Comprehensive health check","description":"Run all validation checks in one command.\n\nChecks:\n- Duplicates\n- Orphaned dependencies\n- Test pollution\n- Git conflicts\n\nSupports --fix-all for auto-repair.\n\nDepends on bd-cbed9619.1, bd-0dcea000, bd-31aab707, bd-9826b69a.\n\nFiles: cmd/bd/validate.go (new)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-10-29T23:05:13.980679-07:00","updated_at":"2025-12-17T22:58:34.562008-08:00","closed_at":"2025-12-17T22:58:34.562008-08:00"} -{"id":"bd-p5za","title":"mol-christmas-launch: 3-day execution plan","description":"Christmas Launch Molecule - execute phases in order, survive restarts.\n\nPIN THIS BEAD. Check progress each session start.\n\n## Step: phase0-beads-foundation\nFix blocking issues before swarming:\n1. Verify gastown beads schema works: bd list --status=open\n2. Ensure bd mol bond exists (check bd-usro)\n3. Verify bd-2vh3 (squash) is filed\n\n## Step: phase1-polecat-loop\nSerial work on polecat execution:\n1. gt-9nf: Fresh polecats only\n2. gt-975: Molecule execution support\n3. gt-8v8: Refuse uncommitted work\nThen swarm: gt-e1y, gt-f8v, gt-eu9\nNeeds: phase0-beads-foundation\n\n## Step: phase2-refinery\nSerial work on refinery autonomy:\n1. gt-5gkd: Refinery CLAUDE.md\n2. gt-bj6f: Refinery context in gt prime\n3. gt-0qki: Refinery-Witness protocol\nNeeds: phase1-polecat-loop\n\n## Step: phase3-deacon\nHealth monitoring infrastructure:\n1. gt-5af.4: Simplify daemon\n2. gt-5af.7: Crew session patterns\n3. gt-976: Crew lifecycle\nNeeds: phase2-refinery\n\n## Step: phase4-code-review\nSelf-improvement flywheel:\n1. Define mol-code-review (gt-fjvo)\n2. Test on open MRs\n3. Integrate with Refinery\nNeeds: phase3-deacon\n\n## Step: phase5-polish\nDemo readiness:\n1. gt-b2hj: Find orphaned work\n2. Doctor checks\n3. Clean up open MRs\nNeeds: phase4-code-review\n\n## Step: verify-flywheel\nSuccess criteria:\n- gt spawn works with molecules\n- Refinery processes MRs autonomously\n- mol-code-review runs on a PR\n- bd cleanup --ephemeral works\nNeeds: phase5-polish","status":"open","issue_type":"epic","created_at":"2025-12-20T21:20:02.462889-08:00","updated_at":"2025-12-20T21:20:02.462889-08:00"} -{"id":"bd-de6","title":"Fix FindBeadsDir to prioritize main repo .beads for worktrees","description":"The FindBeadsDir function should prioritize finding .beads in the main repository root when accessed from a worktree, rather than finding worktree-local .beads directories. This ensures proper sharing of the database across all worktrees.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-07T16:48:36.883117467-07:00","updated_at":"2025-12-07T16:48:36.883117467-07:00"} -{"id":"bd-kqo1","title":"Show pin indicator in bd list output","description":"Add a visual indicator (e.g., pin emoji or [P] marker) for pinned issues in bd list output so users can easily identify them.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-18T23:33:47.402549-08:00","updated_at":"2025-12-18T23:33:47.402549-08:00","dependencies":[{"issue_id":"bd-kqo1","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.771791-08:00","created_by":"daemon"},{"issue_id":"bd-kqo1","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.985271-08:00","created_by":"daemon"}]} -{"id":"bd-pbh.15","title":"Monitor npm publish","description":"Watch the npm publish action:\nhttps://github.com/steveyegge/beads/actions/workflows/npm-publish.yml\n\nVerify at: https://www.npmjs.com/package/@anthropics/claude-code-beads-plugin/v/0.30.4\n\nCheck:\n```bash\nnpm view @anthropics/claude-code-beads-plugin@0.30.4 version\n```\n\n\n```verify\nnpm view @anthropics/claude-code-beads-plugin@0.30.4 version 2\u003e/dev/null | grep -q '0.30.4'\n```","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.091806-08:00","updated_at":"2025-12-17T21:46:46.333213-08:00","closed_at":"2025-12-17T21:46:46.333213-08:00","dependencies":[{"issue_id":"bd-pbh.15","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.092205-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.15","depends_on_id":"bd-pbh.12","type":"blocks","created_at":"2025-12-17T21:19:11.301843-08:00","created_by":"daemon"}]} -{"id":"bd-1tw","title":"Fix G104 errors unhandled in internal/storage/sqlite/queries.go:1186","description":"Linting issue: G104: Errors unhandled (gosec) at internal/storage/sqlite/queries.go:1186:2. Error: rows.Close()","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:13.051671889-07:00","updated_at":"2025-12-17T23:13:40.53486-08:00","closed_at":"2025-12-17T16:46:11.0289-08:00"} -{"id":"bd-crgr","title":"GH#517: Claude sets priority wrong on new install","description":"Claude uses 'medium/high/low' for priority instead of P0-P4. Update bd prime/onboard output to be clearer about priority syntax. See GitHub issue #517.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:34.803084-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-fgw3","title":"Update local installation","description":"Run install script or brew upgrade to get new version locally: curl -fsSL .../install.sh | bash","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:05.052016-08:00","updated_at":"2025-12-20T00:49:51.928221-08:00","closed_at":"2025-12-20T00:25:52.805029-08:00","dependencies":[{"issue_id":"bd-fgw3","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.248427-08:00","created_by":"daemon"},{"issue_id":"bd-fgw3","depends_on_id":"bd-si4g","type":"blocks","created_at":"2025-12-19T22:56:23.497325-08:00","created_by":"daemon"}]} -{"id":"bd-4lm3","title":"Correction: Pinned field already in v0.31.0","description":"Quick correction - the Pinned field is already in the current bd v0.31.0:\n\n```go\n// In beads internal/types/types.go\nPinned bool `json:\"pinned,omitempty\"`\n```\n\nSo you just need to:\n1. Add `Pinned bool `json:\"pinned,omitempty\"`` to BeadsMessage in types.go\n2. Sort pinned messages first in listBeads() after fetching\n\nNo migration needed - the field is already there.\n\n-- Mayor","status":"open","priority":2,"issue_type":"message","created_at":"2025-12-20T17:52:27.321458-08:00","updated_at":"2025-12-20T17:52:27.321458-08:00"} -{"id":"bd-lw0x","title":"Fix bd sync race condition with daemon causing dirty working directory","description":"After bd sync completes with sync.branch mode, subsequent bd commands or daemon file watcher would see a hash mismatch and trigger auto-import, which then schedules re-export, dirtying the working directory.\n\n**Root cause:**\n1. bd sync exports JSONL with NEW content (hash H1)\n2. bd sync updates jsonl_content_hash = H1 in DB\n3. bd sync restores JSONL from HEAD (OLD content, hash H0)\n4. Now: file hash = H0, DB hash = H1 (MISMATCH)\n5. Daemon or next CLI command sees mismatch, imports from OLD JSONL\n6. Import triggers re-export ā†’ file is dirty\n\n**Fix:**\nAfter restoreBeadsDirFromBranch(), update jsonl_content_hash to match the restored file's hash. This ensures daemon and CLI see file hash = DB hash ā†’ no spurious import/export cycle.\n\nRelated: bd-c83r (multiple daemon prevention)","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-13T06:42:17.130839-08:00","updated_at":"2025-12-13T06:43:33.329042-08:00","closed_at":"2025-12-13T06:43:33.329042-08:00"} -{"id":"bd-toy3","title":"Test hook","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T18:33:39.717036-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-t4sb","title":"Work on beads-d8h: Fix prefix mismatch false positive wit...","description":"Work on beads-d8h: Fix prefix mismatch false positive with multi-hyphen prefixes like 'asianops-audit-' (GH#422). When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:19.545069-08:00","updated_at":"2025-12-20T00:26:12.606657-08:00","closed_at":"2025-12-19T23:21:45.471711-08:00"} -{"id":"bd-8pyn","title":"Version Bump: 0.30.7","description":"Release checklist for version 0.30.7. This molecule ensures all release steps are completed properly.","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-19T22:56:48.648694-08:00","updated_at":"2025-12-20T00:49:51.927518-08:00","closed_at":"2025-12-20T00:25:59.529183-08:00"} -{"id":"bd-f5cc","title":"Thread Test","description":"Testing the thread feature","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:01.244501-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-f5cc","depends_on_id":"bd-x36g","type":"supersedes","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} -{"id":"bd-3sz0","title":"Auto-repair stale merge driver configs with invalid placeholders","description":"Old bd versions (\u003c0.24.0) installed merge driver with invalid placeholders %L %R instead of %A %B. Add detection to bd doctor --fix: check if git config merge.beads.driver contains %L or %R, auto-repair to 'bd merge %A %O %A %B'. One-time migration for users who initialized with old versions.","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-21T23:16:10.762808-08:00","updated_at":"2025-11-21T23:16:28.892655-08:00","dependencies":[{"issue_id":"bd-3sz0","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:10.763612-08:00","created_by":"daemon"}]} -{"id":"bd-y8tn","title":"Test Molecule","description":"A test molecule","status":"closed","priority":2,"issue_type":"molecule","created_at":"2025-12-19T18:30:24.491279-08:00","updated_at":"2025-12-19T18:31:12.49898-08:00","closed_at":"2025-12-19T18:31:12.49898-08:00"} -{"id":"bd-otf4","title":"Code Review: PR #481 - Context Engineering Optimizations","description":"Comprehensive code review of the merged context engineering PR (PR #481) that reduces MCP context usage by 80-90%.\n\n## Summary\nThe PR successfully implements lazy tool schema loading and minimal issue models to reduce context window usage. Overall implementation is solid and well-tested.\n\n## Positive Findings\nāœ… Well-designed models (IssueMinimal, CompactedResult)\nāœ… Comprehensive test coverage (28 tests, all passing)\nāœ… Clear documentation and comments\nāœ… Backward compatibility preserved (show() still returns full Issue)\nāœ… Sensible defaults (COMPACTION_THRESHOLD=20, PREVIEW_COUNT=5)\nāœ… Tool catalog complete with all 15 tools documented\n\n## Issues Identified\nSee linked issues for specific followup tasks.\n\n## Context Engineering Architecture\n- discover_tools(): List tool names only (~500 bytes vs ~15KB)\n- get_tool_info(name): Get specific tool details on-demand\n- IssueMinimal: Lightweight model for list views (~80 bytes vs ~400 bytes)\n- CompactedResult: Auto-compacts results with \u003e20 issues\n- _to_minimal(): Conversion function (efficient, no N+1 issues)","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:24:13.523532-08:00","updated_at":"2025-12-14T14:24:13.523532-08:00"} +{"id":"bd-077e","title":"Add close_reason field to CLI schema and documentation","description":"PR #551 persists close_reason, but the CLI documentation may not mention this field as part of the issue schema.\n\n## Current State\n- close_reason is now persisted in database\n- `bd show --json` will return close_reason in JSON output\n- Documentation may not reflect this new field\n\n## What's Missing\n- CLI reference documentation for close_reason field\n- Schema documentation showing close_reason is a top-level issue field\n- Example output showing close_reason in bd show --json\n- bd close command documentation should mention close_reason parameter is optional\n\n## Suggested Action\n1. Update README.md or CLI reference docs to list close_reason as an issue field\n2. Add example to bd close documentation\n3. Update any type definitions or schema specs\n4. Consider adding close_reason to verbose list output (bd list --verbose)","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-14T14:25:28.448654-08:00","updated_at":"2025-12-14T14:25:28.448654-08:00","dependencies":[{"issue_id":"bd-077e","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:28.449968-08:00","created_by":"stevey"}]} {"id":"bd-r46","title":"Support --reason flag in daemon mode for reopen command","description":"The reopen.go command has a TODO at line 61 to add reason as a comment once RPC supports AddComment. Currently --reason flag is ignored in daemon mode with a warning.","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-21T18:55:10.773626-05:00","updated_at":"2025-11-21T18:55:10.773626-05:00"} +{"id":"bd-d3e5","title":"Test issue 2","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-14T11:21:13.878680387-07:00","updated_at":"2025-12-14T11:21:13.878680387-07:00","closed_at":"2025-12-14T00:32:13.890274-08:00"} +{"id":"bd-vgi5","title":"Push version bump to GitHub","description":"git push origin main - triggers CI but no release yet.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:05.363604-08:00","updated_at":"2025-12-18T22:46:57.50777-08:00","closed_at":"2025-12-18T22:46:57.50777-08:00","dependencies":[{"issue_id":"bd-vgi5","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.87736-08:00","created_by":"daemon"},{"issue_id":"bd-vgi5","depends_on_id":"bd-3ggb","type":"blocks","created_at":"2025-12-18T22:43:21.078208-08:00","created_by":"daemon"}]} +{"id":"bd-r6a","title":"Redesign workflow system: templates as native Beads","description":"## Problem\n\nThe current workflow system (YAML templates in cmd/bd/templates/workflows/) is architecturally flawed:\n\n1. **Out-of-band data plane** - YAML files are a parallel system outside Beads itself\n2. **Heavyweight DSL** - YAML is gross; even TOML would have been better, but neither is ideal\n3. **Not graph-native** - Beads IS already a dependency graph with priorities, so why reinvent it?\n4. **Can't use bd commands on templates** - They're opaque YAML, not viewable/editable Beads\n\n## The Right Design\n\n**Templates should be Beads themselves.**\n\nA \"workflow template\" should be:\n- An epic marked as a template (via label, type, or prefix like `tpl-`)\n- Child issues with dependencies between them (using normal bd dep)\n- Titles and descriptions containing `{{variable}}` placeholders\n- Normal priorities that control serialization order\n\n\"Instantiation\" becomes:\n1. Clone the template subgraph (epic + children + dependencies)\n2. Substitute variables in titles/descriptions\n3. Generate new IDs for all cloned issues\n4. Return the new epic ID\n\n## Benefits\n\n- **No YAML** - Templates are just Beads\n- **Use existing tools** - `bd show`, `bd edit`, `bd dep` work on templates\n- **Graph-native** - Dependencies are real Beads dependencies\n- **Simpler codebase** - Remove all the YAML parsing/workflow code\n- **Composable** - Templates can reference other templates\n\n## Tasks\n\n1. Delete the YAML workflow system code (revert recent push + remove existing workflow code)\n2. Design template marking convention (label? type? id prefix?)\n3. Implement `bd template create` or `bd clone --as-template`\n4. Implement `bd template instantiate \u003ctemplate-id\u003e --var key=value`\n5. Migrate version-bump workflow to native Beads template\n6. Update documentation","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-17T22:41:57.359643-08:00","updated_at":"2025-12-18T17:42:26.000769-08:00","closed_at":"2025-12-18T13:47:04.632525-08:00"} +{"id":"bd-y8tn","title":"Test Molecule","description":"A test molecule","status":"closed","priority":2,"issue_type":"molecule","created_at":"2025-12-19T18:30:24.491279-08:00","updated_at":"2025-12-19T18:31:12.49898-08:00","closed_at":"2025-12-19T18:31:12.49898-08:00"} +{"id":"bd-pbh.18","title":"Restart beads daemon","description":"Kill any running daemons so they pick up the new version:\n```bash\nbd daemons killall\n```\n\nStart fresh daemon:\n```bash\nbd list # triggers daemon start\n```\n\nVerify daemon version:\n```bash\nbd version --daemon\n```\n\n\n```verify\nbd version --daemon 2\u003e\u00261 | grep -q '0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.11636-08:00","updated_at":"2025-12-17T21:46:46.364842-08:00","closed_at":"2025-12-17T21:46:46.364842-08:00","dependencies":[{"issue_id":"bd-pbh.18","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.116706-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.18","depends_on_id":"bd-pbh.17","type":"blocks","created_at":"2025-12-17T21:19:11.330411-08:00","created_by":"daemon"}]} +{"id":"bd-pe4s","title":"JSON test issue","description":"Line 1\nLine 2\nLine 3","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T16:14:36.969074-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pbh.4","title":"Update .claude-plugin/plugin.json to 0.30.4","description":"Update version field in .claude-plugin/plugin.json:\n```json\n\"version\": \"0.30.4\"\n```\n\n\n```verify\njq -e '.version == \"0.30.4\"' .claude-plugin/plugin.json\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.976866-08:00","updated_at":"2025-12-17T21:46:46.23159-08:00","closed_at":"2025-12-17T21:46:46.23159-08:00","dependencies":[{"issue_id":"bd-pbh.4","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.97729-08:00","created_by":"daemon"}]} +{"id":"bd-a15d","title":"Add test files for internal/storage","description":"The internal/storage package has no test files at all. This package provides the storage interface abstraction.\n\nCurrent coverage: N/A (no test files)\nTarget: Add basic interface tests","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:11.363017-08:00","updated_at":"2025-12-13T21:01:20.925779-08:00"} +{"id":"bd-4hn","title":"wish: list \u0026 ready show issues as hierarchy tree","description":"`bd ready` and `bd list` just show a flat list, and it's up to the reader to parse which ones are dependent or sub-issues of others. It would be much easier to understand if they were shown in a tree format","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-08T06:38:24.016316945-07:00","updated_at":"2025-12-08T06:39:04.065882225-07:00"} +{"id":"bd-dp4w","title":"Test message","description":"This is a test message body","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:11:58.467876-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} +{"id":"bd-pbh.14","title":"Monitor PyPI publish","description":"Watch the PyPI publish action:\nhttps://github.com/steveyegge/beads/actions/workflows/pypi-publish.yml\n\nVerify at: https://pypi.org/project/beads-mcp/0.30.4/\n\nCheck:\n```bash\npip index versions beads-mcp 2\u003e/dev/null | grep -q '0.30.4'\n```\n\n\n```verify\npip index versions beads-mcp 2\u003e/dev/null | grep -q '0.30.4' || curl -s https://pypi.org/pypi/beads-mcp/json | jq -e '.releases[\"0.30.4\"]'\n```","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.083809-08:00","updated_at":"2025-12-17T21:46:46.320922-08:00","closed_at":"2025-12-17T21:46:46.320922-08:00","dependencies":[{"issue_id":"bd-pbh.14","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.084126-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.14","depends_on_id":"bd-pbh.12","type":"blocks","created_at":"2025-12-17T21:19:11.289698-08:00","created_by":"daemon"}]} +{"id":"bd-kyo","title":"Run tests and linting","description":"Run the full test suite and linter:\n\n```bash\nTMPDIR=/tmp go test -short ./...\ngolangci-lint run ./...\n```\n\nFix any failures. Linting warnings acceptable (see LINTING.md).","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:59.290588-08:00","updated_at":"2025-12-18T22:44:36.570262-08:00","closed_at":"2025-12-18T22:44:36.570262-08:00","dependencies":[{"issue_id":"bd-kyo","depends_on_id":"bd-8hy","type":"blocks","created_at":"2025-12-18T22:43:20.570742-08:00","created_by":"daemon"},{"issue_id":"bd-kyo","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.370234-08:00","created_by":"daemon"}]} +{"id":"bd-m8ro","title":"Improve test coverage for internal/rpc (47.5% ā†’ 60%)","description":"The RPC package has only 47.5% test coverage. RPC is the communication layer for daemon operations.\n\nCurrent coverage: 47.5%\nTarget coverage: 60%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:09.515299-08:00","updated_at":"2025-12-13T21:01:17.17404-08:00"} +{"id":"bd-3sz0","title":"Auto-repair stale merge driver configs with invalid placeholders","description":"Old bd versions (\u003c0.24.0) installed merge driver with invalid placeholders %L %R instead of %A %B. Add detection to bd doctor --fix: check if git config merge.beads.driver contains %L or %R, auto-repair to 'bd merge %A %O %A %B'. One-time migration for users who initialized with old versions.","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-21T23:16:10.762808-08:00","updated_at":"2025-11-21T23:16:28.892655-08:00","dependencies":[{"issue_id":"bd-3sz0","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:10.763612-08:00","created_by":"daemon"}]} +{"id":"bd-qqc.11","title":"Update go install bd to {{version}}","description":"Rebuild and install bd to ~/go/bin:\n\n```bash\ngo install ./cmd/bd\n~/go/bin/bd version # Verify shows {{version}}\n```\n\nNote: If ~/go/bin is in PATH before /opt/homebrew/bin, this is the version that runs by default.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:07:55.838013-08:00","updated_at":"2025-12-18T23:09:05.775582-08:00","closed_at":"2025-12-18T23:09:05.775582-08:00","dependencies":[{"issue_id":"bd-qqc.11","depends_on_id":"bd-qqc.10","type":"blocks","created_at":"2025-12-18T23:08:19.629947-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.11","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T23:07:55.838432-08:00","created_by":"daemon"}]} +{"id":"bd-7yg","title":"Git merge driver uses invalid placeholders (%L, %R instead of %A, %B)","description":"## Problem\n\nThe beads git merge driver is configured with invalid Git placeholders:\n\n```\ngit config merge.beads.driver \"bd merge %A %O %L %R\"\n```\n\nGit doesn't recognize `%L` or `%R` as valid merge driver placeholders. The valid placeholders are:\n- `%O` = base (common ancestor)\n- `%A` = current version (ours)\n- `%B` = other version (theirs)\n\n## Impact\n\n- Affects ALL users when they have `.beads/beads.jsonl` merge conflicts\n- Automatic JSONL merge fails with error: \"error reading left file: failed to open file: open 7: no such file or directory\"\n- Users must manually resolve conflicts instead of getting automatic merge\n\n## Root Cause\n\nThe `bd init` command (or wherever the merge driver is configured) is using non-standard placeholders. When Git encounters `%L` and `%R`, it either passes them literally or interprets them incorrectly.\n\n## Fix\n\nUpdate the merge driver configuration to:\n```\ngit config merge.beads.driver \"bd merge %A %O %A %B\"\n```\n\nWhere:\n- 1st `%A` = output file (current file, will be overwritten)\n- `%O` = base (common ancestor)\n- 2nd `%A` = left/current version\n- `%B` = right/other version\n\n## Action Items\n\n1. Fix `bd init` (or equivalent setup command) to use correct placeholders\n2. Add migration/warning for existing users with misconfigured merge driver\n3. Update documentation with correct merge driver setup\n4. Consider adding validation when `bd init` is run","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-21T19:51:55.747608-05:00","updated_at":"2025-12-17T23:13:40.532368-08:00","closed_at":"2025-12-17T17:24:52.678668-08:00"} +{"id":"bd-s2t","title":"wish: a 'continue' or similar cmd/flag which means alter last issue","description":"so many time I create an issue and then have another thought: 'oh, before I did X and it crashed there was ZZZ happening' or 'actually that is P4 not P2'. It would be nice if when `bd {cmd}` is used without a {title} or {id} it just adds or updates the most recently touched issue.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-08T06:46:37.529160416-07:00","updated_at":"2025-12-08T06:46:37.529160416-07:00"} +{"id":"bd-bw6","title":"Fix G104 errors unhandled in internal/storage/sqlite/queries.go:1181","description":"Linting issue: G104: Errors unhandled (gosec) at internal/storage/sqlite/queries.go:1181:4. Error: rows.Close()","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:09.008444133-07:00","updated_at":"2025-12-17T23:13:40.536627-08:00","closed_at":"2025-12-17T16:46:11.029355-08:00"} +{"id":"bd-pbh.7","title":"Update beads_mcp/__init__.py to 0.30.4","description":"Update __version__ in integrations/beads-mcp/src/beads_mcp/__init__.py:\n```python\n__version__ = \"0.30.4\"\n```\n\n\n```verify\ngrep -q '__version__ = \"0.30.4\"' integrations/beads-mcp/src/beads_mcp/__init__.py\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.005334-08:00","updated_at":"2025-12-17T21:46:46.254885-08:00","closed_at":"2025-12-17T21:46:46.254885-08:00","dependencies":[{"issue_id":"bd-pbh.7","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.005699-08:00","created_by":"daemon"}]} +{"id":"bd-ola6","title":"Implement transaction retry logic for SQLITE_BUSY","description":"BEGIN IMMEDIATE fails immediately on SQLITE_BUSY instead of retrying with exponential backoff.\n\nLocation: internal/storage/sqlite/sqlite.go:223-225\n\nProblem:\n- Under concurrent write load, BEGIN IMMEDIATE can fail with SQLITE_BUSY\n- Current implementation fails immediately instead of retrying\n- Results in spurious failures under normal concurrent usage\n\nSolution: Implement exponential backoff retry:\n- Retry up to N times (e.g., 5)\n- Backoff: 10ms, 20ms, 40ms, 80ms, 160ms\n- Check for context cancellation between retries\n- Only retry on SQLITE_BUSY/database locked errors\n\nImpact: Spurious failures under concurrent write load\n\nEffort: 3 hours","status":"open","priority":1,"issue_type":"feature","created_at":"2025-11-16T14:51:31.247147-08:00","updated_at":"2025-11-16T14:51:31.247147-08:00"} +{"id":"bd-qqc.7","title":"Push release v{{version}} to remote","description":"Push the commit and tag:\n\n```bash\ngit push \u0026\u0026 git push --tags\n```\n\nVerify on GitHub that the tag appears in releases.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T13:00:26.933082-08:00","updated_at":"2025-12-18T23:34:18.630538-08:00","closed_at":"2025-12-18T22:41:41.882956-08:00","dependencies":[{"issue_id":"bd-qqc.7","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T13:00:26.933687-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.7","depends_on_id":"bd-qqc.6","type":"blocks","created_at":"2025-12-18T13:01:12.711161-08:00","created_by":"stevey"}]} +{"id":"bd-uqfn","title":"Work on beads-wkt: Output control parameters for MCP tool...","description":"Work on beads-wkt: Output control parameters for MCP tools (GH#622). Add brief, fields, max_description_length params to ready/list/show. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:57:10.675535-08:00","updated_at":"2025-12-20T00:49:51.929271-08:00","closed_at":"2025-12-19T23:28:25.362931-08:00"} +{"id":"bd-2oo.4","title":"Create migration script for edge field to dependency conversion","description":"Migration must:\n1. Read existing JSONL with old fields\n2. Convert field values to dependency records\n3. Write updated JSONL without old fields\n4. Handle edge cases (missing refs, duplicates)\n\nRun via: bd migrate or automatic on bd prime","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:01.760277-08:00","updated_at":"2025-12-18T02:49:10.602446-08:00","closed_at":"2025-12-18T02:49:10.602446-08:00","dependencies":[{"issue_id":"bd-2oo.4","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:01.760694-08:00","created_by":"daemon"}]} +{"id":"bd-sh4c","title":"Improve test coverage for cmd/bd/setup (28.4% ā†’ 50%)","description":"The setup package has only 28.4% test coverage. Setup commands are critical for first-time user experience.\n\nCurrent coverage: 28.4%\nTarget coverage: 50%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:04.409346-08:00","updated_at":"2025-12-13T21:01:18.98833-08:00"} +{"id":"bd-aydr.4","title":"Implement CLI command (cmd/bd/reset.go)","description":"Wire up the reset command with Cobra CLI.\n\n## Responsibilities\n- Define command and all flags\n- User confirmation prompt (unless --force)\n- Display impact summary before confirmation\n- Colored output and progress indicators\n- Call core reset package\n- Handle errors with user-friendly messages\n- Register command with rootCmd in init()\n\n## Flags\n```go\n--hard bool \"Also remove from git and commit\"\n--force bool \"Skip confirmation prompt\"\n--backup bool \"Create backup before reset\"\n--dry-run bool \"Preview what would happen\"\n--skip-init bool \"Do not re-initialize after reset\"\n--verbose bool \"Show detailed progress output\"\n```\n\n## Output Format\n```\nāš ļø This will reset beads to a clean state.\n\nWill be deleted:\n ā€¢ 47 issues (23 open, 24 closed)\n ā€¢ 12 tombstones\n\nContinue? [y/N] y\n\nā†’ Stopping daemons... āœ“\nā†’ Removing .beads/... āœ“\nā†’ Initializing fresh... āœ“\n\nāœ“ Reset complete. Run 'bd onboard' to set up hooks.\n```\n\n## Implementation Notes\n- Confirmation logic lives HERE, not in core package\n- Use color package (github.com/fatih/color) for output\n- Follow patterns from other commands (init.go, doctor.go)\n- Add to rootCmd in init() function\n\n## File Location\n`cmd/bd/reset.go`","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:54.318854+11:00","updated_at":"2025-12-13T10:13:32.611434+11:00","closed_at":"2025-12-13T09:59:41.72638+11:00","dependencies":[{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:54.319237+11:00","created_by":"daemon"},{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr.1","type":"blocks","created_at":"2025-12-13T08:45:09.762138+11:00","created_by":"daemon"},{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr.2","type":"blocks","created_at":"2025-12-13T08:45:09.817854+11:00","created_by":"daemon"},{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr.3","type":"blocks","created_at":"2025-12-13T08:45:09.883658+11:00","created_by":"daemon"}]} +{"id":"bd-28db","title":"Add 'bd status' command for issue database overview","description":"Implement a bd status command that provides a quick snapshot of the issue database state, similar to how git status shows working tree state.\n\nExpected output: Show summary including counts by state (open, in-progress, blocked, closed), recent activity (last 7 days), and quick overview without needing multiple queries.\n\nExample output showing issue counts, recent activity stats, and pointer to bd list for details.\n\nProposed options: --all (show all issues), --assigned (show issues assigned to current user), --json (JSON format output)\n\nUse cases: Quick project health check, onboarding for new contributors, integration with shell prompts or CI/CD, daily standup reference","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-02T17:25:59.203549-08:00","updated_at":"2025-11-02T17:25:59.203549-08:00"} +{"id":"bd-dqu8","title":"Restart running daemons","description":"Kill and restart any running bd daemons to pick up new version: pkill -f 'bd daemon' \u0026\u0026 bd daemon --start","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T00:32:26.559311-08:00","updated_at":"2025-12-20T00:32:59.123766-08:00","closed_at":"2025-12-20T00:32:59.123766-08:00","dependencies":[{"issue_id":"bd-dqu8","depends_on_id":"bd-fgw3","type":"blocks","created_at":"2025-12-20T00:32:39.427846-08:00","created_by":"daemon"},{"issue_id":"bd-dqu8","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-20T00:32:39.36213-08:00","created_by":"daemon"}]} +{"id":"bd-cb64c226.1","title":"Performance Validation","description":"Confirm no performance regression from cache removal","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T10:50:15.126019-07:00","updated_at":"2025-12-17T23:18:29.108883-08:00","deleted_at":"2025-12-17T23:18:29.108883-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-4q8","title":"bd cleanup --hard should skip tombstone creation for true permanent deletion","description":"## Problem\n\nWhen using bd cleanup --hard --older-than N --force, the command:\n1. Deletes closed issues older than N days (converting them to tombstones with NOW timestamp)\n2. Then tries to prune tombstones older than N days (finds none because they were just created)\n\nThis leaves the database bloated with fresh tombstones that will not be pruned.\n\n## Expected Behavior\n\nIn --hard mode, the deletion should be permanent without creating tombstones, since the user explicitly requested bypassing sync safety.\n\n## Workaround\n\nManually delete from database: sqlite3 .beads/beads.db 'DELETE FROM issues WHERE status=tombstone'\n\n## Fix Options\n\n1. In --hard mode, use a different delete path that does not create tombstones\n2. After deleting, immediately prune the just-created tombstones regardless of age\n3. Pass a skip_tombstone flag to the delete operation\n\nOption 1 is cleanest - --hard should mean permanent delete without tombstone.","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T01:33:36.580657-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-pbh.16","title":"Update Homebrew formula","description":"After GoReleaser completes, the Homebrew tap should be auto-updated.\n\nIf manual update needed:\n```bash\n./scripts/update-homebrew.sh v0.30.4\n```\n\nOr manually update steveyegge/homebrew-beads with new SHA256.\n\nVerify:\n```bash\nbrew update\nbrew info beads\n```\n","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.100213-08:00","updated_at":"2025-12-17T21:46:46.341942-08:00","closed_at":"2025-12-17T21:46:46.341942-08:00","dependencies":[{"issue_id":"bd-pbh.16","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.100541-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.16","depends_on_id":"bd-pbh.13","type":"blocks","created_at":"2025-12-17T21:19:11.312625-08:00","created_by":"daemon"}]} +{"id":"bd-aydr.5","title":"Enhance bd doctor to suggest reset for broken states","description":"Update bd doctor to detect severely broken states and suggest reset.\n\n## Detection Criteria\nSuggest reset when:\n- Multiple unfixable errors detected\n- Corrupted JSONL that can't be repaired\n- Schema version mismatch that can't be migrated\n- Daemon state inconsistent and unkillable\n\n## Implementation\nAdd to doctor's check/fix flow:\n```go\nif unfixableErrors \u003e threshold {\n suggest('State may be too broken to fix. Consider: bd reset')\n}\n```\n\n## Output Example\n```\nāœ— Found 5 unfixable errors\n \n Your beads state may be too corrupted to repair.\n Consider running 'bd reset' to start fresh.\n (Use 'bd reset --backup' to save current state first)\n```\n\n## Notes\n- Don't auto-run reset, just suggest\n- This is lower priority, can be done in parallel with main work","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-13T08:44:55.591986+11:00","updated_at":"2025-12-13T06:24:29.561624-08:00","closed_at":"2025-12-13T10:17:23.4522+11:00","dependencies":[{"issue_id":"bd-aydr.5","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:55.59239+11:00","created_by":"daemon"}]} +{"id":"bd-2oo.3","title":"Update all code to use dependencies API for edges","description":"Find and update all code that reads/writes:\n- replies_to field -\u003e use dependency API\n- relates_to field -\u003e use dependency API\n- duplicate_of field -\u003e use dependency API\n- superseded_by field -\u003e use dependency API\n\nCommands affected: bd mail, bd relate, bd duplicate, bd supersede, bd show, etc.","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:01.317006-08:00","updated_at":"2025-12-18T02:49:10.59233-08:00","closed_at":"2025-12-18T02:49:10.59233-08:00","dependencies":[{"issue_id":"bd-2oo.3","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:01.31856-08:00","created_by":"daemon"}]} +{"id":"bd-f3ll","title":"Merge: bd-ot0w","description":"branch: polecat/dementus\ntarget: main\nsource_issue: bd-ot0w\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:20:33.495772-08:00","updated_at":"2025-12-19T23:20:33.495772-08:00"} +{"id":"bd-x1xs","title":"Work on beads-1ra: Add molecules.jsonl as separate catalo...","description":"Work on beads-1ra: Add molecules.jsonl as separate catalog file for template molecules","status":"in_progress","priority":2,"issue_type":"task","created_at":"2025-12-19T20:17:44.840032-08:00","updated_at":"2025-12-19T20:17:44.905944-08:00"} +{"id":"bd-6fe4622f","title":"Remove unreachable utility functions","description":"Several small utility functions are unreachable:\n\nFiles to clean:\n1. `internal/storage/sqlite/hash.go` - `computeIssueContentHash` (line 17)\n - Check if entire file can be deleted if only contains this function\n\n2. `internal/config/config.go` - `FileUsed` (line 151)\n - Delete unused config helper\n\n3. `cmd/bd/git_sync_test.go` - `verifyIssueOpen` (line 300)\n - Delete dead test helper\n\n4. `internal/compact/haiku.go` - `HaikuClient.SummarizeTier2` (line 81)\n - Tier 2 summarization not implemented\n - Options: implement feature OR delete method\n\nImpact: Removes 50-100 LOC depending on decisions","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-28T16:20:02.434573-07:00","updated_at":"2025-12-17T22:58:34.563993-08:00","closed_at":"2025-12-17T22:58:34.563993-08:00"} +{"id":"bd-kwro.6","title":"Mail Commands: bd mail send/inbox/read/ack","description":"Implement core mail commands in cmd/bd/mail.go\n\nCommands:\n- bd mail send \u003crecipient\u003e -s 'Subject' -m 'Body' [--urgent]\n - Creates issue with type=message, sender=identity, assignee=recipient\n - --urgent sets priority=0\n \n- bd mail inbox [--from \u003csender\u003e] [--priority \u003cn\u003e]\n - Lists open messages where assignee=my identity\n - Sorted by priority, then date\n \n- bd mail read \u003cid\u003e\n - Shows full message content (subject, body, sender, timestamp)\n - Does NOT close (separate from ack)\n \n- bd mail ack \u003cid\u003e\n - Marks message as read by closing it\n - Can ack multiple: bd mail ack \u003cid1\u003e \u003cid2\u003e ...\n\nRequires: Identity configuration (bd-kwro.7)","status":"tombstone","issue_type":"task","created_at":"2025-12-16T03:02:12.103755-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pbh.10","title":"Run check-versions.sh - all must pass","description":"Run the version consistency check:\n```bash\n./scripts/check-versions.sh\n```\n\nAll versions must match 0.30.4.\n\n\n```verify\n./scripts/check-versions.sh\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.047311-08:00","updated_at":"2025-12-17T21:46:46.28316-08:00","closed_at":"2025-12-17T21:46:46.28316-08:00","dependencies":[{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.7","type":"blocks","created_at":"2025-12-17T21:19:11.199955-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.047888-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.1","type":"blocks","created_at":"2025-12-17T21:19:11.159084-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.8","type":"blocks","created_at":"2025-12-17T21:19:11.211479-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.9","type":"blocks","created_at":"2025-12-17T21:19:11.224059-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.4","type":"blocks","created_at":"2025-12-17T21:19:11.168248-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.5","type":"blocks","created_at":"2025-12-17T21:19:11.177869-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.6","type":"blocks","created_at":"2025-12-17T21:19:11.187629-08:00","created_by":"daemon"}]} +{"id":"bd-0w5","title":"Fix update-hooks verification in version-bump.yaml","description":"The update-hooks task verification command at version-bump.yaml:358 always succeeds due to '|| echo ...' fallback. Remove the fallback so verification actually fails when hooks aren't installed.","status":"closed","priority":3,"issue_type":"bug","created_at":"2025-12-17T22:23:06.55467-08:00","updated_at":"2025-12-17T22:34:07.290409-08:00","closed_at":"2025-12-17T22:34:07.290409-08:00"} +{"id":"bd-kwro","title":"Beads Messaging \u0026 Knowledge Graph (v0.30.2)","description":"Add messaging semantics and extended graph links to Beads, enabling it to serve as\nthe universal substrate for knowledge work - issues, messages, documents, and threads\nas nodes in a queryable graph.\n\n## Motivation\n\nGas Town (GGT) needs inter-agent communication. Rather than a separate mail system,\ncollapse messaging into Beads - one system, one sync, one query interface, all in git.\n\nThis also positions Beads as a foundation for:\n- Company-wide issue tracking (like Notion)\n- Threaded conversations (like Reddit/Slack)\n- Knowledge graphs with loose associations\n- Arbitrary workflow UIs built on top\n\n## New Issue Type\n\n**message** - ephemeral communication between workers\n- sender: who sent it\n- assignee: recipient\n- priority: P0 (urgent) to P4 (routine)\n- status: open (unread) -\u003e closed (read)\n- ephemeral: true = can be bulk-deleted after swarm\n\n## New Graph Links\n\n**replies_to** - conversation threading\n- Messages reply to messages\n- Enables Reddit-style nested threads\n- Different from parent_id (not hierarchy, its conversation flow)\n\n**relates_to** - loose see also associations\n- Bidirectional knowledge graph edges\n- Not blocking, not hierarchical, just related\n- Enables discovery and traversal\n\n**duplicates** - deduplication at scale\n- Mark issue B as duplicate of canonical issue A\n- Close B, link to A\n- Essential for large issue databases\n\n**supersedes** - version chains\n- Design Doc v2 supersedes Design Doc v1\n- Track evolution of artifacts\n\n## New Fields (optional, any issue type)\n\n- sender (string) - who created this (for messages)\n- ephemeral (boolean) - can be bulk-deleted when closed\n\n## New Commands\n\nMessaging:\n- bd mail send \u003crecipient\u003e -s Subject -m Body\n- bd mail inbox (list open messages for me)\n- bd mail read \u003cid\u003e (show message content)\n- bd mail ack \u003cid\u003e (mark as read/close)\n- bd mail reply \u003cid\u003e -m Response (reply to thread)\n\nGraph links:\n- bd relate \u003cid1\u003e \u003cid2\u003e (create relates_to link)\n- bd duplicate \u003cid\u003e --of \u003ccanonical\u003e (mark as duplicate)\n- bd supersede \u003cid\u003e --with \u003cnew\u003e (mark superseded)\n\nCleanup:\n- bd cleanup --ephemeral (delete closed ephemeral issues)\n\n## Identity Configuration\n\nWorkers need identity for sender field:\n- BEADS_IDENTITY env var\n- Or .beads/config.json: identity field\n\n## Hooks (for GGT integration)\n\nBeads as platform - extensible without knowing about GGT.\nHook files in .beads/hooks/:\n- on_create (runs after bd create)\n- on_update (runs after bd update)\n- on_close (runs after bd close)\n- on_message (runs after bd mail send)\n\nGGT registers hooks to notify daemons of new messages.\n\n## Schema Changes (Migration Required)\n\nAdd to issue schema:\n- type: message (new valid type)\n- sender: string (optional)\n- ephemeral: boolean (optional)\n- replies_to: string (issue ID, optional)\n- relates_to: []string (issue IDs, optional)\n- duplicates: string (canonical issue ID, optional)\n- superseded_by: string (new issue ID, optional)\n\nMigration adds fields as optional - existing beads unchanged.\n\n## Success Criteria\n\n1. bd mail send/inbox/read/ack/reply work end-to-end\n2. replies_to creates proper thread structure\n3. relates_to, duplicates, supersedes links queryable\n4. Hooks fire on create/update/close/message\n5. Identity configurable via env or config\n6. Migration preserves all existing data\n7. All new features have tests","status":"tombstone","issue_type":"epic","created_at":"2025-12-16T03:00:53.912223-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"epic"} +{"id":"bd-o4qy","title":"Improve CheckStaleness error handling","description":"## Problem\n\nCheckStaleness returns 'false' (not stale) for multiple error conditions instead of returning errors. This masks problems.\n\n**Location:** internal/autoimport/autoimport.go:253-285\n\n## Edge Cases That Return False\n\n1. **Invalid last_import_time format** (line 259-262)\n2. **No JSONL file found** (line 267-277) \n3. **JSONL stat fails** (line 279-282)\n\n## Fix\n\nReturn errors for abnormal conditions:\n\n```go\nlastImportTime, err := time.Parse(time.RFC3339, lastImportStr)\nif err != nil {\n return false, fmt.Errorf(\"corrupted last_import_time: %w\", err)\n}\n\nif jsonlPath == \"\" {\n return false, fmt.Errorf(\"no JSONL file found\")\n}\n\nstat, err := os.Stat(jsonlPath)\nif err != nil {\n return false, fmt.Errorf(\"cannot stat JSONL: %w\", err)\n}\n```\n\n## Impact\nMedium - edge cases are rare but should be handled\n\n## Effort \n30 minutes - requires updating callers in RPC server","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-11-20T20:17:27.606219-05:00","updated_at":"2025-12-17T23:13:40.536905-08:00","closed_at":"2025-12-17T19:11:12.965289-08:00","dependencies":[{"issue_id":"bd-o4qy","depends_on_id":"bd-2q6d","type":"blocks","created_at":"2025-11-20T20:18:26.81065-05:00","created_by":"stevey"}]} +{"id":"bd-czss","title":"Update CHANGELOG.md with release notes","description":"Add meaningful release notes to CHANGELOG.md describing what changed in {{version}}","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:55:59.909641-08:00","updated_at":"2025-12-20T17:59:26.262153-08:00","closed_at":"2025-12-20T01:23:51.407302-08:00","dependencies":[{"issue_id":"bd-czss","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:14.862724-08:00","created_by":"daemon"},{"issue_id":"bd-czss","depends_on_id":"bd-qkw9","type":"blocks","created_at":"2025-12-19T22:56:23.145894-08:00","created_by":"daemon"}]} +{"id":"bd-4nqq","title":"Remove dead test code in info_test.go","description":"Code health review found cmd/bd/info_test.go has two tests permanently skipped:\n\n- TestInfoCommand\n- TestInfoCommandNoDaemon\n\nBoth skip with: 'Manual test - bd info command is working, see manual testing'\n\nThese are essentially dead code. Either automate them or remove them entirely.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:27.554019-08:00","updated_at":"2025-12-16T18:17:27.554019-08:00","dependencies":[{"issue_id":"bd-4nqq","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.381694-08:00","created_by":"daemon"}]} +{"id":"bd-usro","title":"Rename 'template instantiate' to 'mol bond'","description":"Rename the template instantiation command to match molecule metaphor.\n\nCurrent: bd template instantiate \u003cid\u003e --var key=value\nTarget: bd mol bond \u003cid\u003e --var key=value\n\nChanges needed:\n- Add 'mol' command group (or extend existing)\n- Add 'bond' subcommand that wraps template instantiate logic\n- Keep 'template instantiate' as deprecated alias for backward compat\n- Update help text and docs to use molecule terminology\n\nThe 'bond' verb captures:\n1. Chemistry metaphor (molecules bond to form structures)\n2. Dependency linking (child issues bonded in a DAG)\n3. Short and active\n\nSee also: molecule execution model in Gas Town","status":"open","priority":1,"issue_type":"feature","created_at":"2025-12-20T16:56:37.582795-08:00","updated_at":"2025-12-20T16:56:37.582795-08:00"} +{"id":"bd-si4g","title":"Verify release artifacts","description":"Check GitHub releases page - binaries for darwin/linux/windows should be available","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:04.183029-08:00","updated_at":"2025-12-20T00:49:51.92894-08:00","closed_at":"2025-12-20T00:25:52.720816-08:00","dependencies":[{"issue_id":"bd-si4g","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.173619-08:00","created_by":"daemon"},{"issue_id":"bd-si4g","depends_on_id":"bd-otli","type":"blocks","created_at":"2025-12-19T22:56:23.428507-08:00","created_by":"daemon"}]} +{"id":"bd-cb64c226.9","title":"Remove Cache-Related Tests","description":"Delete or update tests that assume multi-repo caching","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:44.511897-07:00","updated_at":"2025-12-17T23:18:29.110385-08:00","deleted_at":"2025-12-17T23:18:29.110385-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-6s61","title":"Version Bump: {{version}}","description":"Release checklist for version {{version}}. This molecule ensures all release steps are completed properly.","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-19T22:55:42.487701-08:00","updated_at":"2025-12-20T17:59:26.261233-08:00","closed_at":"2025-12-20T01:18:47.905306-08:00"} +{"id":"bd-bxha","title":"Default to YES for git hooks and merge driver installation","description":"Currently bd init prompts user to install git hooks and merge driver, but setup is incomplete if user declines. Change to install by default unless --skip-hooks or --skip-merge-driver flags are passed. Better safe defaults. If installation fails, warn user and suggest bd doctor --fix.","status":"open","priority":1,"issue_type":"feature","created_at":"2025-11-21T23:16:10.172238-08:00","updated_at":"2025-11-21T23:16:28.369137-08:00","dependencies":[{"issue_id":"bd-bxha","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:10.173034-08:00","created_by":"daemon"}]} +{"id":"bd-au0.5","title":"Add date and priority filters to bd search","description":"Add filter parity with bd list for consistent querying.\n\n**Missing filters to add:**\n- --priority, --priority-min, --priority-max\n- --created-after, --created-before\n- --updated-after, --updated-before\n- --closed-after, --closed-before\n- --empty-description, --no-assignee, --no-labels\n- --desc-contains, --notes-contains\n\n**Files to modify:**\n- cmd/bd/search.go\n- internal/rpc/protocol.go (SearchArgs)\n- internal/storage/storage.go (Search method)\n\n**Testing:**\n- All filter combinations\n- Date format parsing\n- Daemon and direct mode","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-21T21:07:05.496726-05:00","updated_at":"2025-11-21T21:07:05.496726-05:00","dependencies":[{"issue_id":"bd-au0.5","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:05.497762-05:00","created_by":"daemon"}]} +{"id":"bd-u0g9","title":"GH#405: Prefix parsing with hyphens treats first segment as prefix","description":"Prefix me-py-toolkit gets parsed as just me- when detecting mismatches. Fix prefix parsing to handle multi-hyphen prefixes. See GitHub issue #405.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:18.354066-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-hvng","title":"Merge: bd-w193","description":"branch: polecat/nux\ntarget: main\nsource_issue: bd-w193\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:23:47.496139-08:00","updated_at":"2025-12-19T23:23:47.496139-08:00"} +{"id":"bd-746","title":"Fix resolvePartialID stub in workflow.go","description":"The resolvePartialID function at workflow.go:921-925 is a stub that just returns the ID unchanged. Should use utils.ResolvePartialID for proper partial ID resolution in direct mode (non-daemon).","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-17T22:22:57.586917-08:00","updated_at":"2025-12-17T22:34:07.270168-08:00","closed_at":"2025-12-17T22:34:07.270168-08:00"} +{"id":"bd-4ec8","title":"Widespread double JSON encoding bug in daemon mode RPC calls","description":"Multiple CLI commands had the same double JSON encoding bug found in bd-1048. All commands that called ResolveID via RPC used string(resp.Data) instead of properly unmarshaling the JSON response. This caused IDs to retain JSON quotes (\"bd-1048\" instead of bd-1048), which then got double-encoded when passed to subsequent RPC calls.\n\nAffected commands:\n- bd show (3 instances)\n- bd dep add/remove/tree (5 instances)\n- bd label add/remove/list (3 instances)\n- bd reopen (1 instance)\n\nRoot cause: resp.Data is json.RawMessage (already JSON-encoded), so string() conversion preserves quotes.\n\nFix: Replace all string(resp.Data) with json.Unmarshal(resp.Data, \u0026id) for proper deserialization.\n\nAll commands now tested and working correctly with daemon mode.","status":"closed","issue_type":"bug","created_at":"2025-11-02T22:33:01.632691-08:00","updated_at":"2025-12-17T23:13:40.533631-08:00","closed_at":"2025-12-17T16:26:05.851197-08:00"} +{"id":"bd-fa2h","title":"šŸ¤ HANDOFF: v0.31.0 released, molecules discussion","description":"Session completed 0.31.0 release and had important molecules discussion.\n\n## Completed\n- v0.31.0 released (deferred status, audit trail, directory labels, etc.)\n- Fixed lint issues, hook version markers, codesigning\n- All CI green, artifacts verified\n\n## Filed Issues\n- bd-usro: Rename template instantiate ā†’ bd mol bond\n- bd-y8bj: Auto-detect identity for bd mail (P1 bug)\n- gt-975: Molecule execution support for polecats/crew\n- gt-976: Crew lifecycle support in Deacon\n\n## Key Insight\nMolecules are the future - TodoWrite is ephemeral, molecules are persistent institutional memory on the world chain. I tried to use TodoWrite for version bump and missed steps (codesigning, MCP verification). Molecules would have caught this.\n\n## Next Steps\n- bd mol bond implementation is priority\n- Max has gt-976 for crew lifecycle (enables automated refresh mid-molecule)\n\nCheck bd ready and gt-975/976 status.","status":"open","priority":2,"issue_type":"message","created_at":"2025-12-20T17:23:09.889562-08:00","updated_at":"2025-12-20T17:23:09.889562-08:00"} +{"id":"bd-4lm3","title":"Correction: Pinned field already in v0.31.0","description":"Quick correction - the Pinned field is already in the current bd v0.31.0:\n\n```go\n// In beads internal/types/types.go\nPinned bool `json:\"pinned,omitempty\"`\n```\n\nSo you just need to:\n1. Add `Pinned bool `json:\"pinned,omitempty\"`` to BeadsMessage in types.go\n2. Sort pinned messages first in listBeads() after fetching\n\nNo migration needed - the field is already there.\n\n-- Mayor","status":"open","priority":2,"issue_type":"message","created_at":"2025-12-20T17:52:27.321458-08:00","updated_at":"2025-12-20T17:52:27.321458-08:00"} +{"id":"bd-ziy5","title":"GH#409: bd init uses issues.jsonl but docs say beads.jsonl","description":"bd init creates config referencing issues.jsonl but README/docs reference beads.jsonl as canonical. Standardize naming. See GitHub issue #409.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:58.109954-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-svb5","title":"GH#505: Add bd reset/wipe command","description":"Add command to cleanly reset/wipe beads database. User reports painful manual process to start fresh. See GitHub issue #505.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:03:42.160966-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} +{"id":"bd-thgk","title":"Improve test coverage for internal/compact (18.2% ā†’ 70%)","description":"The compact package has only 18.2% test coverage. This is a core package handling issue compaction and should have at least 70% coverage.\n\nKey functions needing tests:\n- runCompactSingle (0%)\n- runCompactAll (0%)\n- runCompactRPC (0%)\n- runCompactStatsRPC (0%)\n- runCompactAnalyze (0%)\n- runCompactApply (0%)\n- pruneDeletionsManifest (0%)\n\nCurrent coverage: 18.2%\nTarget coverage: 70%","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-13T20:42:58.455767-08:00","updated_at":"2025-12-13T21:01:15.070551-08:00"} +{"id":"bd-77gm","title":"Import reports misleading '0 created, 0 updated' when actually importing all issues","description":"When running 'bd import' on a fresh database (no existing issues), the command reports 'Import complete: 0 created, 0 updated' even though it successfully imported all issues from the JSONL file.\n\n**Steps to reproduce:**\n1. Delete .beads/beads.db\n2. Run: bd import .beads/issues.jsonl\n3. Observe output: 'Import complete: 0 created, 0 updated'\n4. Run: bd list\n5. Confirm: All issues are actually present in the database\n\n**Expected behavior:**\nReport the actual number of issues imported, e.g., 'Import complete: 523 created, 0 updated'\n\n**Actual behavior:**\n'Import complete: 0 created, 0 updated' (misleading - makes user think import failed)\n\n**Impact:**\n- Users think import failed when it succeeded\n- Confusing during database sync operations (e.g., after git pull)\n- Makes debugging harder (can't tell if import actually worked)\n\n**Context:**\nDiscovered during VC session when syncing database after git pull. The misleading message caused confusion about whether the database was properly synced with the canonical JSONL file.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-11-09T16:20:13.191156-08:00","updated_at":"2025-11-09T16:20:13.191156-08:00"} +{"id":"bd-pgcs","title":"Clean up orphaned child issues (bd-cb64c226.*, bd-cbed9619.*)","description":"## Problem\n\nEvery bd command shows warnings about 12 orphaned child issues:\n- bd-cb64c226.1, .6, .8, .9, .10, .12, .13\n- bd-cbed9619.1, .2, .3, .4, .5\n\nThese are hierarchical IDs (parent.child format) where the parent issues no longer exist.\n\n## Impact\n\n- Clutters output of every bd command\n- Confusing for users\n- Indicates incomplete cleanup of deleted parent issues\n\n## Proposed Solution\n\n1. Delete the orphaned issues since their parents no longer exist:\n ```bash\n bd delete bd-cb64c226.1 bd-cb64c226.6 bd-cb64c226.8 ...\n ```\n\n2. Or convert them to top-level issues if they contain useful content\n\n## Investigation Needed\n\n- What were the parent issues bd-cb64c226 and bd-cbed9619?\n- Why were they deleted without their children?\n- Should bd delete cascade to children automatically?","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T23:06:17.240571-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-8pyn","title":"Version Bump: 0.30.7","description":"Release checklist for version 0.30.7. This molecule ensures all release steps are completed properly.","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-19T22:56:48.648694-08:00","updated_at":"2025-12-20T00:49:51.927518-08:00","closed_at":"2025-12-20T00:25:59.529183-08:00"} +{"id":"bd-y2v","title":"Refactor duplicate JSONL-from-git parsing code","description":"Both readFirstIssueFromGit() in init.go and importFromGit() in autoimport.go have similar code patterns for:\n1. Running git show \u003cref\u003e:\u003cpath\u003e\n2. Scanning the output with bufio.Scanner\n3. Parsing JSON lines\n\nCould be refactored to share a helper like:\n- readJSONLFromGit(gitRef, path string) ([]byte, error)\n- Or a streaming version: streamJSONLFromGit(gitRef, path string) (io.Reader, error)\n\nFiles:\n- cmd/bd/autoimport.go:225-256 (importFromGit)\n- cmd/bd/init.go:1212-1243 (readFirstIssueFromGit)\n\nPriority is low since code duplication is minimal and both functions work correctly.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-05T14:51:18.41124-08:00","updated_at":"2025-12-05T14:51:18.41124-08:00"} +{"id":"bd-r6a.4","title":"Add bd template list command","description":"Add a convenience command to list available templates:\n\nbd template list\n\nThis is equivalent to 'bd list --label=template' but more discoverable.\nCould also show variable placeholders found in each template.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T22:43:47.525316-08:00","updated_at":"2025-12-17T23:02:45.700582-08:00","closed_at":"2025-12-17T23:02:45.700582-08:00","dependencies":[{"issue_id":"bd-r6a.4","depends_on_id":"bd-r6a.2","type":"blocks","created_at":"2025-12-17T22:44:03.474353-08:00","created_by":"daemon"},{"issue_id":"bd-r6a.4","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:47.525743-08:00","created_by":"daemon"}]} +{"id":"bd-otli","title":"Wait for CI to pass","description":"Monitor GitHub Actions - all checks must pass before release artifacts are built","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:03.022281-08:00","updated_at":"2025-12-20T00:49:51.928591-08:00","closed_at":"2025-12-20T00:25:52.635223-08:00","dependencies":[{"issue_id":"bd-otli","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.097564-08:00","created_by":"daemon"},{"issue_id":"bd-otli","depends_on_id":"bd-7tuu","type":"blocks","created_at":"2025-12-19T22:56:23.360436-08:00","created_by":"daemon"}]} +{"id":"bd-r6a.3","title":"Create version-bump template as native Beads","description":"Migrate the version-bump workflow from YAML to a native Beads template:\n\n1. Create epic with template label: Release {{version}}\n2. Create child tasks for each step (update version files, changelog, commit, push, publish)\n3. Set up dependencies between tasks\n4. Add verification commands in task descriptions\n\nThis serves as both migration and validation of the new system.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T22:43:40.694931-08:00","updated_at":"2025-12-18T17:42:26.001149-08:00","closed_at":"2025-12-18T13:02:09.039457-08:00","dependencies":[{"issue_id":"bd-r6a.3","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:40.695392-08:00","created_by":"daemon"},{"issue_id":"bd-r6a.3","depends_on_id":"bd-r6a.2","type":"blocks","created_at":"2025-12-17T22:44:03.311902-08:00","created_by":"daemon"}]} +{"id":"bd-pbh.2","title":"Update CHANGELOG.md for 0.30.4","description":"1. Change `## [Unreleased]` to `## [0.30.4] - 2025-12-17`\n2. Add new empty `## [Unreleased]` section at top\n3. Ensure all changes since 0.30.3 are documented\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.956332-08:00","updated_at":"2025-12-17T21:46:46.214512-08:00","closed_at":"2025-12-17T21:46:46.214512-08:00","dependencies":[{"issue_id":"bd-pbh.2","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.95683-08:00","created_by":"daemon"}]} +{"id":"bd-aydr.1","title":"Implement core reset package (internal/reset)","description":"Create the core reset logic in internal/reset/ package.\n\n## Responsibilities\n- ResetOptions struct with all flag options\n- CountImpact() - count issues/tombstones that will be deleted\n- ValidateState() - check .beads/ exists, check git dirty state\n- ExecuteReset() - main reset logic (without CLI concerns)\n- Integrate with daemon killall\n\n## Interface Design\n```go\ntype ResetOptions struct {\n Hard bool // Include git operations (git rm, commit)\n Backup bool // Create backup before reset\n DryRun bool // Preview only, don't execute\n SkipInit bool // Don't re-initialize after reset\n}\n\ntype ResetResult struct {\n IssuesDeleted int\n TombstonesDeleted int\n BackupPath string // if backup was created\n DaemonsKilled int\n}\n\ntype ImpactSummary struct {\n IssueCount int\n OpenCount int\n ClosedCount int\n TombstoneCount int\n HasUncommitted bool // git dirty state\n}\n\nfunc Reset(opts ResetOptions) (*ResetResult, error)\nfunc CountImpact() (*ImpactSummary, error)\nfunc ValidateState() error\n```\n\n## IMPORTANT: CLI vs Core Separation\n- `Force` (skip confirmation) is NOT in ResetOptions - that's a CLI concern\n- Core always executes when called; CLI decides whether to prompt first\n- Keep CLI-agnostic: no prompts, no colored output, no user interaction\n- Return errors for CLI to handle with user-friendly messages\n- Unit testable in isolation\n\n## Dependencies\n- Uses daemon.KillAllDaemons() from internal/daemon/\n- Calls bd init logic after reset (unless SkipInit)","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:50.145364+11:00","updated_at":"2025-12-13T10:13:32.610253+11:00","closed_at":"2025-12-13T09:20:06.184893+11:00","dependencies":[{"issue_id":"bd-aydr.1","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:50.145775+11:00","created_by":"daemon"}]} +{"id":"bd-rgyd","title":"Split internal/storage/sqlite/queries.go (1586 lines)","description":"Code health review found queries.go is too large at 1586 lines with:\n\n- Issue scanning logic duplicated between transaction.go and queries.go\n- Timestamp defensive fixes duplicated in CreateIssue, CreateIssues, batch_ops.go\n- Multiple similar patterns that should be consolidated\n\nAlso: transaction.go at 1284 lines, dependencies.go at 893 lines\n\nRecommendation:\n1. Extract common scanning into shared function\n2. Consolidate timestamp defensive fixes\n3. Split queries.go by domain (CRUD, search, batch, events)","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-16T18:17:23.85869-08:00","updated_at":"2025-12-16T18:17:23.85869-08:00","dependencies":[{"issue_id":"bd-rgyd","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.062038-08:00","created_by":"daemon"}]} +{"id":"bd-tm2p","title":"Polecats get stuck on interactive shell prompts (cp/mv/rm -i)","description":"During swarm operations, polecats frequently get stuck waiting for interactive prompts from shell commands like:\n- cp prompting 'overwrite file? (y/n)'\n- mv prompting 'overwrite file? (y/n)' \n- rm prompting 'remove file?'\n\nThis happens because macOS aliases or shell configs may have -i flags set by default.\n\nRoot cause: Claude Code runs commands that trigger interactive confirmation prompts, but cannot respond to them, causing the agent to hang indefinitely.\n\nObserved in: Multiple polecats during GH issues swarm (Dec 2024)\n- Derrick, Roustabout, Prospector, Warboy all got stuck on y/n prompts\n\nSuggested fixes:\n1. AGENTS.md should instruct agents to always use -f flag with cp/mv/rm\n2. Polecat startup could set shell aliases to use non-interactive versions\n3. bd prime hook could include guidance about non-interactive commands\n4. Consider detecting stuck prompts and auto-recovering","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-14T16:51:24.572271-08:00","updated_at":"2025-12-17T23:13:40.536312-08:00","closed_at":"2025-12-17T19:13:04.074424-08:00"} +{"id":"bd-tbz3","title":"bd init UX Improvements","description":"bd init leaves users with incomplete setup, requiring manual bd doctor --fix. Issues found: (1) git hooks not installed if user declines prompt, (2) no auto-migration when CLI is upgraded, (3) stale merge driver configs from old versions. Fix by making bd init more robust with better defaults and auto-migration.","status":"open","priority":1,"issue_type":"epic","created_at":"2025-11-21T23:16:00.333543-08:00","updated_at":"2025-11-21T23:16:37.811233-08:00"} +{"id":"bd-5b6e","title":"Add tests for helper functions (GetDirtyIssueHash, GetAllDependencyRecords, export hashes)","description":"Several utility functions have 0% coverage:\n- GetDirtyIssueHash (dirty.go)\n- GetAllDependencyRecords (dependencies.go)\n- GetExportHash, SetExportHash, ClearAllExportHashes (hash.go)\n\nThese are lower priority but should have basic coverage.","status":"open","priority":4,"issue_type":"task","created_at":"2025-11-01T22:40:58.989976-07:00","updated_at":"2025-11-01T22:40:58.989976-07:00"} +{"id":"bd-r36u","title":"gt mq list shows empty when MRs exist","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-20T01:13:07.561256-08:00","updated_at":"2025-12-20T01:13:07.561256-08:00"} +{"id":"bd-kwro.7","title":"Identity Configuration","description":"Implement identity system for sender field.\n\nConfiguration sources (in priority order):\n1. --identity flag on commands\n2. BEADS_IDENTITY environment variable\n3. .beads/config.json: {\"identity\": \"worker-name\"}\n4. Default: git user.name or hostname\n\nNew config file support:\n- .beads/config.json for per-repo settings\n- identity field for messaging\n\nHelper function:\n- GetIdentity() string - resolves identity from sources\n\nUpdate bd mail send to use GetIdentity() for sender field.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:02:17.603608-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-qkw9","title":"Run bump-version.sh {{version}}","description":"Run ./scripts/bump-version.sh {{version}} to update version in all files","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:55:58.841424-08:00","updated_at":"2025-12-20T17:59:26.262877-08:00","closed_at":"2025-12-20T01:18:48.99813-08:00","dependencies":[{"issue_id":"bd-qkw9","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:14.786027-08:00","created_by":"daemon"}]} +{"id":"bd-pbh.8","title":"Update npm-package/package.json to 0.30.4","description":"Update version field in npm-package/package.json:\n```json\n\"version\": \"0.30.4\"\n```\n\n\n```verify\njq -e '.version == \"0.30.4\"' npm-package/package.json\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.014905-08:00","updated_at":"2025-12-17T21:46:46.268821-08:00","closed_at":"2025-12-17T21:46:46.268821-08:00","dependencies":[{"issue_id":"bd-pbh.8","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.01529-08:00","created_by":"daemon"}]} +{"id":"bd-pbh.13","title":"Monitor GoReleaser CI job","description":"Watch the GoReleaser action:\nhttps://github.com/steveyegge/beads/actions/workflows/release.yml\n\nShould complete in ~10 minutes and create:\n- GitHub Release with binaries for all platforms\n- Checksums and signatures\n\nCheck status:\n```bash\ngh run list --workflow=release.yml -L 1\ngh run watch # to monitor live\n```\n\nVerify release exists:\n```bash\ngh release view v0.30.4\n```\n\n\n```verify\ngh release view v0.30.4 --json tagName -q .tagName | grep -q 'v0.30.4'\n```","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.074476-08:00","updated_at":"2025-12-17T21:46:46.311506-08:00","closed_at":"2025-12-17T21:46:46.311506-08:00","dependencies":[{"issue_id":"bd-pbh.13","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.074833-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.13","depends_on_id":"bd-pbh.12","type":"blocks","created_at":"2025-12-17T21:19:11.279092-08:00","created_by":"daemon"}]} +{"id":"bd-dwh","title":"Implement or remove ExpectExit/ExpectStdout verification fields","description":"The Verification struct in internal/types/workflow.go has ExpectExit and ExpectStdout fields that are never used by workflowVerifyCmd. Either implement the functionality or remove the dead fields.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-17T22:23:02.708627-08:00","updated_at":"2025-12-17T22:34:07.300348-08:00","closed_at":"2025-12-17T22:34:07.300348-08:00"} +{"id":"bd-whgv","title":"Merge: bd-401h","description":"branch: polecat/rictus\ntarget: main\nsource_issue: bd-401h\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:20:37.854953-08:00","updated_at":"2025-12-19T23:20:37.854953-08:00"} +{"id":"bd-pbh.21","title":"Final release verification","description":"Verify all release artifacts are accessible:\n\n- [ ] `bd --version` shows 0.30.4\n- [ ] `bd version --daemon` shows 0.30.4\n- [ ] GitHub release exists: https://github.com/steveyegge/beads/releases/tag/v0.30.4\n- [ ] `brew upgrade beads \u0026\u0026 bd --version` shows 0.30.4 (if using Homebrew)\n- [ ] `pip show beads-mcp` shows 0.30.4\n- [ ] npm package available at 0.30.4\n- [ ] `bd info --whats-new` shows 0.30.4 notes\n\nRun final checks:\n```bash\nbd --version\nbd version --daemon\npip show beads-mcp | grep Version\nbd info --whats-new\n```\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.141249-08:00","updated_at":"2025-12-17T21:46:46.390985-08:00","closed_at":"2025-12-17T21:46:46.390985-08:00","dependencies":[{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.15","type":"blocks","created_at":"2025-12-17T21:19:11.389733-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.16","type":"blocks","created_at":"2025-12-17T21:19:11.398347-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.141549-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.18","type":"blocks","created_at":"2025-12-17T21:19:11.364839-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.19","type":"blocks","created_at":"2025-12-17T21:19:11.373656-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.20","type":"blocks","created_at":"2025-12-17T21:19:11.382-08:00","created_by":"daemon"}]} +{"id":"bd-3852","title":"Add orphan detection migration","description":"Create migration to detect orphaned children in existing databases. Query: SELECT id FROM issues WHERE id LIKE '%.%' AND substr(id, 1, instr(id || '.', '.') - 1) NOT IN (SELECT id FROM issues). Log results, let user decide action (delete orphans or convert to top-level).","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-04T12:32:30.727044-08:00","updated_at":"2025-11-04T12:32:30.727044-08:00"} +{"id":"bd-lfak","title":"bd preflight: PR readiness checks for contributors","description":"## Vision\n\nEncode project-specific institutional knowledge into executable checks. CONTRIBUTING.md is documentation that's read once and forgotten; `bd preflight` is documentation that runs at exactly the right moment.\n\n## Problem Statement\n\nContributors face a \"last mile\" problem - they do the work but stumble on project-specific gotchas at PR time:\n- Nix vendorHash gets stale when go.sum changes\n- Beads artifacts leak into PRs (see bd-umbf for namespace solution)\n- Version mismatches between version.go and default.nix\n- Tests/lint not run locally before pushing\n- Other project-specific checks that only surface when CI fails\n\nThese are too obscure to remember, exist in docs nobody reads end-to-end, and waste CI round-trips.\n\n## Why beads?\n\nBeads already has a foothold in the contributor workflow. It knows:\n- Git state (staged files, branch, dirty status)\n- Project structure\n- The specific issue being worked on\n- Project-specific configuration\n\n## Proposed Interface\n\n### Tier 1: Checklist Mode (v1)\n\n $ bd preflight\n PR Readiness Checklist:\n\n [ ] Tests pass: go test -short ./...\n [ ] Lint passes: golangci-lint run ./...\n [ ] No beads pollution: check .beads/issues.jsonl diff\n [ ] Nix hash current: go.sum unchanged or vendorHash updated\n [ ] Version sync: version.go matches default.nix\n\n Run 'bd preflight --check' to validate automatically.\n\n### Tier 2: Check Mode (v2)\n\n $ bd preflight --check\n āœ“ Tests pass\n āœ“ Lint passes\n āš  Beads pollution: 3 issues in diff - are these project issues or personal?\n āœ— Nix hash stale: go.sum changed, vendorHash needs update\n Fix: sha256-KRR6dXzsSw8OmEHGBEVDBOoIgfoZ2p0541T9ayjGHlI=\n āœ“ Version sync\n\n 1 error, 1 warning. Run 'bd preflight --fix' to auto-fix where possible.\n\n### Tier 3: Fix Mode (v3)\n\n $ bd preflight --fix\n āœ“ Updated vendorHash in default.nix\n āš  Cannot auto-fix beads pollution - manual review needed\n\n## Checks to Implement\n\n| Check | Description | Auto-fixable |\n|-------|-------------|--------------|\n| tests | Run go test -short ./... | No |\n| lint | Run golangci-lint | Partial (gofmt) |\n| beads-pollution | Detect personal issues in diff | No (see bd-umbf) |\n| nix-hash | Detect stale vendorHash | Yes (if nix available) |\n| version-sync | version.go matches default.nix | Yes |\n| no-debug | No TODO/FIXME/console.log | Warn only |\n| clean-stage | No unintended files staged | Warn only |\n\n## Future: Configuration\n\nMake checks configurable per-project via .beads/preflight.yaml:\n\n preflight:\n checks:\n - name: tests\n run: go test -short ./...\n required: true\n - name: no-secrets\n pattern: \"**/*.env\"\n staged: deny\n - name: custom-check\n run: ./scripts/validate.sh\n\nThis lets any project using beads define their own preflight checks.\n\n## Implementation Phases\n\n### Phase 1: Static Checklist\n- Implement bd preflight with hardcoded checklist for beads\n- No execution, just prints what to check\n- Update CONTRIBUTING.md to reference it\n\n### Phase 2: Automated Checks\n- Implement bd preflight --check\n- Run tests, lint, detect stale hashes\n- Clear pass/fail/warn output\n\n### Phase 3: Auto-fix\n- Implement bd preflight --fix\n- Fix vendorHash, version sync\n- Integrate with bd-umbf solution for pollution\n\n### Phase 4: Configuration\n- .beads/preflight.yaml support\n- Make it useful for other projects using beads\n- Plugin/hook system for custom checks\n\n## Dependencies\n\n- bd-umbf: Namespace isolation for beads pollution (blocking for full solution)\n\n## Success Metrics\n\n- Fewer CI failures on first PR push\n- Reduced \"fix nix hash\" commits\n- Contributors report preflight caught issues before CI","status":"open","priority":2,"issue_type":"epic","created_at":"2025-12-13T18:01:39.587078-08:00","updated_at":"2025-12-13T18:01:39.587078-08:00","dependencies":[{"issue_id":"bd-lfak","depends_on_id":"bd-umbf","type":"blocks","created_at":"2025-12-13T18:01:46.059901-08:00","created_by":"daemon"}]} +{"id":"bd-de6","title":"Fix FindBeadsDir to prioritize main repo .beads for worktrees","description":"The FindBeadsDir function should prioritize finding .beads in the main repository root when accessed from a worktree, rather than finding worktree-local .beads directories. This ensures proper sharing of the database across all worktrees.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-07T16:48:36.883117467-07:00","updated_at":"2025-12-07T16:48:36.883117467-07:00"} +{"id":"bd-ot0w","title":"Work on beads-tip: Fix broken Claude integration link in ...","description":"Work on beads-tip: Fix broken Claude integration link in bd doctor (GH#623). Update URL that doesn't exist. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:08.429157-08:00","updated_at":"2025-12-19T23:20:39.790305-08:00","closed_at":"2025-12-19T23:20:39.790305-08:00"} +{"id":"bd-4sfl","title":"Merge: bd-14ie","description":"branch: polecat/toast\ntarget: main\nsource_issue: bd-14ie\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:23:37.360782-08:00","updated_at":"2025-12-19T23:23:37.360782-08:00"} +{"id":"bd-rupw","title":"Run bump-version.sh 0.30.7","description":"Run ./scripts/bump-version.sh 0.30.7 to update version in all files","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649647-08:00","updated_at":"2025-12-19T22:57:31.512956-08:00","closed_at":"2025-12-19T22:57:31.512956-08:00","dependencies":[{"issue_id":"bd-rupw","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.653475-08:00","created_by":"stevey"}]} +{"id":"bd-qqc.2","title":"Add {{version}} to versionChanges in info.go","description":"Add new entry at the TOP of versionChanges array in cmd/bd/info.go:\n\n```go\n{\n Version: \"{{version}}\",\n Date: \"{{date}}\",\n Changes: []string{\n // Add notable changes here\n },\n},\n```\n\nCopy changes from CHANGELOG.md [Unreleased] section.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:27.032117-08:00","updated_at":"2025-12-18T23:34:18.631996-08:00","closed_at":"2025-12-18T22:41:41.836137-08:00","dependencies":[{"issue_id":"bd-qqc.2","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:27.032746-08:00","created_by":"stevey"}]} +{"id":"bd-8g8","title":"Fix G304 potential file inclusion in cmd/bd/tips.go:259","description":"Linting issue: G304: Potential file inclusion via variable (gosec) at cmd/bd/tips.go:259:18. Error: if data, err := os.ReadFile(settingsPath); err == nil {","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:34:57.189730843-07:00","updated_at":"2025-12-17T23:13:40.534569-08:00","closed_at":"2025-12-17T16:46:11.029837-08:00"} +{"id":"bd-9usz","title":"Test suite hangs/never finishes","description":"Running 'go test ./... -count=1' hangs indefinitely. The full test suite never completes, making it difficult to verify changes. Need to investigate which tests are hanging and fix or add timeouts.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-16T21:56:27.80191-08:00","updated_at":"2025-12-16T21:56:27.80191-08:00"} +{"id":"bd-cb64c226.12","title":"Remove Storage Cache from Server Struct","description":"Eliminate cache fields and use s.storage directly","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:25.474412-07:00","updated_at":"2025-12-17T23:18:29.111039-08:00","deleted_at":"2025-12-17T23:18:29.111039-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-gjla","title":"Test Thread","description":"Initial message for threading test","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:19:51.704324-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-gjla","depends_on_id":"bd-f5cc","type":"duplicates","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} +{"id":"bd-aay","title":"Warn on invalid depends_on references in workflow templates","description":"workflow.go:780-781 silently skips invalid dependency names. Should log a warning when a depends_on reference doesn't match any task ID in the template.","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T22:23:04.325253-08:00","updated_at":"2025-12-17T22:34:07.309495-08:00","closed_at":"2025-12-17T22:34:07.309495-08:00"} +{"id":"bd-kwro.1","title":"Schema: Add message type and new fields","description":"Add to internal/storage/sqlite/schema.go and models:\n\nNew issue_type value:\n- message\n\nNew optional fields on Issue struct:\n- Sender string (who sent this)\n- Ephemeral bool (can be bulk-deleted)\n- RepliesTo string (issue ID for threading)\n- RelatesTo []string (issue IDs for knowledge graph)\n- Duplicates string (canonical issue ID)\n- SupersededBy string (replacement issue ID)\n\nUpdate:\n- internal/storage/sqlite/schema.go - add columns\n- internal/models/issue.go - add fields to struct\n- internal/storage/sqlite/sqlite.go - CRUD operations\n- Create migration from v0.30.1\n\nEnsure backward compatibility - all new fields optional.","status":"tombstone","issue_type":"task","created_at":"2025-12-16T03:01:19.777604-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pdr2","title":"Consider backwards compatibility for ready() and list() return type change","description":"PR #481 changed the return types of `ready()` and `list()` from `list[Issue]` to `list[IssueMinimal] | CompactedResult`. This is a breaking change for MCP clients.\n\n## Impact Assessment\nBreaking change affects:\n- Any MCP client expecting `list[Issue]` from ready()\n- Any MCP client expecting `list[Issue]` from list()\n- Client code that accesses full Issue fields (description, design, acceptance_criteria, timestamps, dependencies, dependents)\n\n## Current Behavior\n- ready() returns `list[IssueMinimal] | CompactedResult`\n- list() returns `list[IssueMinimal] | CompactedResult`\n- show() still returns full `Issue` (good)\n\n## Considerations\n**Pros of current approach:**\n- Forces clients to use show() for full details (good for context efficiency)\n- Simple mental model (always use show for full data)\n- Documentation warns about this\n\n**Cons:**\n- Clients expecting list[Issue] will break\n- No graceful degradation option\n- No migration period\n\n## Potential Solutions\n1. Add optional parameter `full_details=false` to ready/list (would increase payload)\n2. Create separate tools: ready_minimal/list_minimal + ready_full/list_full\n3. Accept breaking change and document upgrade path (current approach)\n4. Version the MCP server and document migration guide\n\n## Recommendation\nCurrent approach (solution 3) is reasonable if:\n- Changelog clearly documents the breaking change\n- Migration guide provided to clients\n- Error handling is graceful for clients expecting specific fields","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:24:56.460465-08:00","updated_at":"2025-12-14T14:24:56.460465-08:00","dependencies":[{"issue_id":"bd-pdr2","depends_on_id":"bd-otf4","type":"discovered-from","created_at":"2025-12-14T14:24:56.461959-08:00","created_by":"stevey"}]} +{"id":"bd-7b7h","title":"bd sync --merge fails due to chicken-and-egg: .beads/ always dirty","description":"## Problem\n\nWhen sync.branch is configured (e.g., beads-sync), the bd sync workflow creates a chicken-and-egg problem:\n\n1. `bd sync` commits changes to beads-sync via worktree\n2. `bd sync` copies JSONL to main working dir via `copyJSONLToMainRepo()` (sync.go line 364, worktree.go line 678-685)\n3. The copy is NOT committed to main - it just updates the working tree\n4. `bd sync --merge` checks for clean working dir (sync.go line 1547-1548)\n5. `bd sync --merge` FAILS because .beads/issues.jsonl is uncommitted!\n\n## Impact\n\n- sync.branch workflow is fundamentally broken\n- Users cannot periodically merge beads-sync ā†’ main\n- Main branch always shows as dirty\n- Creates confusion about git state\n\n## Root Cause\n\nsync.go:1547-1548:\n```go\nif len(strings.TrimSpace(string(statusOutput))) \u003e 0 {\n return fmt.Errorf(\"main branch has uncommitted changes, please commit or stash them first\")\n}\n```\n\nThis check blocks merge when ANY uncommitted changes exist, including the .beads/ changes that `bd sync` itself created.\n\n## Proposed Fix\n\nOption A: Exclude .beads/ from the clean check in `mergeSyncBranch`:\n```go\n// Check if there are non-beads uncommitted changes\nstatusCmd := exec.CommandContext(ctx, \"git\", \"status\", \"--porcelain\", \"--\", \":!.beads/\")\n```\n\nOption B: Auto-stash .beads/ changes before merge, restore after\n\nOption C: Change the workflow - do not copy JSONL to main working dir, instead always read from worktree\n\n## Files to Modify\n\n- cmd/bd/sync.go:1540-1549 (mergeSyncBranch function)\n- Possibly internal/syncbranch/worktree.go (copyJSONLToMainRepo)","notes":"## Fix Implemented\n\nModified cmd/bd/sync.go mergeSyncBranch function:\n\n1. **Exclude .beads/ from dirty check** (line 1543):\n Changed `git status --porcelain` to `git status --porcelain -- :!.beads/`\n This allows merge to proceed when only .beads/ has uncommitted changes.\n\n2. **Restore .beads/ to HEAD before merge** (lines 1553-1561):\n Added `git checkout HEAD -- .beads/` before merge to prevent\n \"Your local changes would be overwritten by merge\" errors.\n The .beads/ changes are redundant since they came FROM beads-sync.\n\n## Testing\n\n- All cmd/bd sync/merge tests pass\n- All internal/syncbranch tests pass\n- Manual verification needed for full workflow","status":"tombstone","issue_type":"bug","created_at":"2025-12-16T23:06:06.97703-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-qqc.1","title":"Update version to {{version}} in version.go","description":"Edit cmd/bd/version.go line 17:\n\n```go\nVersion = \"{{version}}\"\n```\n\nVerify with: `grep 'Version =' cmd/bd/version.go`","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:13.887087-08:00","updated_at":"2025-12-18T23:34:18.630067-08:00","closed_at":"2025-12-18T22:41:41.82664-08:00","dependencies":[{"issue_id":"bd-qqc.1","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:13.887655-08:00","created_by":"stevey"}]} +{"id":"bd-0d5p","title":"Fix TestRunSync_Timeout failing on macOS","description":"The hooks timeout test fails because exec.CommandContext doesn't properly terminate child processes of shell scripts on macOS. The test creates a hook that runs 'sleep 60' with a 500ms timeout, but it waits the full 60 seconds.\n\nOptions to fix:\n- Use SysProcAttr{Setpgid: true} to create process group and kill the group\n- Skip test on darwin with build tag\n- Use a different approach for timeout testing\n\nLocation: internal/hooks/hooks_test.go:220-253","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T20:52:51.771217-08:00","updated_at":"2025-12-17T23:13:40.532688-08:00","closed_at":"2025-12-17T17:23:55.678799-08:00"} +{"id":"bd-pbh","title":"Release v0.30.4","description":"## Version Bump Workflow\n\nCoordinating release from 0.30.3 to 0.30.4.\n\n### Components Updated\n- Go CLI (cmd/bd/version.go)\n- Claude Plugin (.claude-plugin/*.json)\n- MCP Server (integrations/beads-mcp/)\n- npm Package (npm-package/package.json)\n- Git hooks (cmd/bd/templates/hooks/)\n\n### Release Channels\n- GitHub Releases (GoReleaser)\n- PyPI (beads-mcp)\n- npm (@beads/cli)\n- Homebrew (homebrew-beads tap)\n","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-17T21:19:10.926133-08:00","updated_at":"2025-12-17T21:46:46.192948-08:00","closed_at":"2025-12-17T21:46:46.192948-08:00"} +{"id":"bd-c2xs","title":"Exclude pinned issues from bd blocked","description":"Update bd blocked to exclude pinned issues. Pinned issues are context markers and should not appear in the blocked work list.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:44.684242-08:00","updated_at":"2025-12-18T23:33:44.684242-08:00","dependencies":[{"issue_id":"bd-c2xs","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.521323-08:00","created_by":"daemon"},{"issue_id":"bd-c2xs","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.736681-08:00","created_by":"daemon"}]} +{"id":"bd-pbh.3","title":"Add 0.30.4 to info.go release notes","description":"Update cmd/bd/info.go versionChanges map with release notes for 0.30.4.\nInclude any workflow-impacting changes for --whats-new output.\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.966781-08:00","updated_at":"2025-12-17T21:46:46.222445-08:00","closed_at":"2025-12-17T21:46:46.222445-08:00","dependencies":[{"issue_id":"bd-pbh.3","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.967287-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.3","depends_on_id":"bd-pbh.2","type":"blocks","created_at":"2025-12-17T21:19:11.149584-08:00","created_by":"daemon"}]} +{"id":"bd-a0cp","title":"Consider using types.Status in merge package for type safety","description":"The merge package uses string for status comparison (e.g., result.Status == closed, issue.Status == StatusTombstone). The types package defines Status as a type alias with validation. While the merge package needs its own Issue struct for JSONL flexibility, it could import and use types.Status for constants to get compile-time type checking. Current code: if left == closed || right == closed. Could be: if left == string(types.StatusClosed). This is low priority since string comparison works correctly. Files: internal/merge/merge.go:44, 488, 501-521","status":"open","priority":4,"issue_type":"task","created_at":"2025-12-05T16:37:10.690424-08:00","updated_at":"2025-12-05T16:37:10.690424-08:00"} +{"id":"bd-elqd","title":"Systematic bd sync stability investigation","description":"## Context\n\nbd sync has chronic instability issues that have persisted since inception:\n- issues.jsonl is always dirty after push\n- bd sync often creates messes requiring manual cleanup\n- Problems escalating despite accumulated bug fixes\n- Workarounds are getting increasingly draconian\n\n## Goal\n\nSystematically observe and diagnose bd sync failures rather than applying band-aid fixes.\n\n## Approach\n\n1. Start fresh session with latest binary (all fixes applied)\n2. Run bd sync and carefully observe what happens\n3. Document exact sequence of events when things go wrong\n4. File specific issues for each discrete problem identified\n5. Track the root causes, not just symptoms\n\n## Test Environment\n\n- Fresh clone or clean state\n- Latest bd binary with all bug fixes\n- Monitor both local and remote JSONL state\n- Check for timing issues, race conditions, merge conflicts\n\n## Success Criteria\n\n- Identify root causes of sync instability\n- Create actionable issues for each problem\n- Eventually achieve stable bd sync (no manual intervention needed)","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T22:57:25.35289-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pbh.20","title":"Update git hooks","description":"Install the updated hooks:\n```bash\nbd hooks install\n```\n\nVerify hook version:\n```bash\ngrep 'bd-hooks-version' .git/hooks/pre-commit\n```\n\n\n```verify\ngrep -q 'bd-hooks-version: 0.30.4' .git/hooks/pre-commit 2\u003e/dev/null || echo 'Hooks may not be installed - verify manually'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.13198-08:00","updated_at":"2025-12-17T21:46:46.381519-08:00","closed_at":"2025-12-17T21:46:46.381519-08:00","dependencies":[{"issue_id":"bd-pbh.20","depends_on_id":"bd-pbh.17","type":"blocks","created_at":"2025-12-17T21:19:11.352288-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.20","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.132306-08:00","created_by":"daemon"}]} +{"id":"bd-1tw","title":"Fix G104 errors unhandled in internal/storage/sqlite/queries.go:1186","description":"Linting issue: G104: Errors unhandled (gosec) at internal/storage/sqlite/queries.go:1186:2. Error: rows.Close()","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:13.051671889-07:00","updated_at":"2025-12-17T23:13:40.53486-08:00","closed_at":"2025-12-17T16:46:11.0289-08:00"} +{"id":"bd-ndye","title":"mergeDependencies uses union instead of 3-way merge","description":"## Critical Bug\n\nThe `mergeDependencies` function in internal/merge/merge.go performs a UNION of left and right dependencies instead of a proper 3-way merge. This causes removed dependencies to be resurrected.\n\n### Root Cause\n\n```go\n// Current code (lines 795-816):\nfunc mergeDependencies(left, right []Dependency) []Dependency {\n // Just unions left + right\n // NEVER REMOVES anything\n // Doesn't even look at base!\n}\n```\n\nAnd `mergeIssue` (line 579) doesn't pass `base`:\n```go\nresult.Dependencies = mergeDependencies(left.Dependencies, right.Dependencies)\n```\n\n### Impact\n\nIf:\n- Base has dependency D\n- Left removes D (intentional)\n- Right still has D (stale)\n\nCurrent: D is in result (resurrection!)\nCorrect: Left removed it, D should NOT be in result\n\nThis breaks Gas Town's workflow and data integrity. Closed means closed.\n\n### Fix\n\nChange `mergeDependencies` to take `base` and do proper 3-way merge:\n- If dep was in base and removed by left ā†’ exclude (left wins)\n- If dep was in base and removed by right ā†’ exclude (right wins)\n- If dep wasn't in base and added by either ā†’ include\n- If dep was in base and both still have it ā†’ include\n\nKey principle: **REMOVALS ARE AUTHORITATIVE**\n\n### Files to Change\n\n1. internal/merge/merge.go:\n - `mergeDependencies(left, right)` ā†’ `mergeDependencies(base, left, right)`\n - `mergeIssue` line 579: pass `base.Dependencies`\n\n### Related\n\nThis also explains why `ProtectLocalExportIDs` in importer is defined but never used - the protection was never actually implemented.","status":"closed","issue_type":"bug","created_at":"2025-12-18T23:15:54.475872-08:00","updated_at":"2025-12-18T23:21:10.709571-08:00","closed_at":"2025-12-18T23:21:10.709571-08:00"} +{"id":"bd-dhza","title":"Reduce global state in cmd/bd/main.go (25+ variables)","description":"Code health review found main.go has 25+ global variables (lines 57-112):\n\n- dbPath, actor, store, jsonOutput, daemonClient, noDaemon\n- rootCtx, rootCancel, autoFlushEnabled\n- isDirty (marked 'USED BY LEGACY CODE')\n- needsFullExport (marked 'USED BY LEGACY CODE')\n- flushTimer (marked 'DEPRECATED')\n- flushMutex, storeMutex, storeActive\n- flushFailureCount, lastFlushError, flushManager\n- skipFinalFlush, autoImportEnabled\n- versionUpgradeDetected, previousVersion, upgradeAcknowledged\n\nImpact:\n- Hard to test individual commands\n- Race conditions possible\n- State leakage between commands\n\nFix: Move toward dependency injection. Remove deprecated variables. Consider cmd/bd/internal package.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:29.643293-08:00","updated_at":"2025-12-16T18:17:29.643293-08:00","dependencies":[{"issue_id":"bd-dhza","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.492112-08:00","created_by":"daemon"}]} +{"id":"bd-r6a.5","title":"Update documentation for template system","description":"Update AGENTS.md and help text to document the new template system:\n\n- How to create a template (epic + template label + child issues)\n- How to define variables (just use {{name}} placeholders)\n- How to instantiate (bd template instantiate)\n- Migration from YAML workflows (if any users had custom ones)","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-17T22:43:55.461345-08:00","updated_at":"2025-12-18T17:42:26.001474-08:00","closed_at":"2025-12-18T13:46:53.446262-08:00","dependencies":[{"issue_id":"bd-r6a.5","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:55.461763-08:00","created_by":"daemon"},{"issue_id":"bd-r6a.5","depends_on_id":"bd-r6a.3","type":"blocks","created_at":"2025-12-17T22:44:03.632404-08:00","created_by":"daemon"},{"issue_id":"bd-r6a.5","depends_on_id":"bd-r6a.4","type":"blocks","created_at":"2025-12-17T22:44:03.788517-08:00","created_by":"daemon"}]} +{"id":"bd-pbh.11","title":"Commit changes and create v0.30.4 tag","description":"```bash\ngit add -A\ngit commit -m \"chore: Bump version to 0.30.4\"\ngit tag -a v0.30.4 -m \"Release v0.30.4\"\n```\n\n\n```verify\ngit describe --tags --exact-match HEAD 2\u003e/dev/null | grep -q 'v0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.056575-08:00","updated_at":"2025-12-17T21:46:46.292166-08:00","closed_at":"2025-12-17T21:46:46.292166-08:00","dependencies":[{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh.2","type":"blocks","created_at":"2025-12-17T21:19:11.245316-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh.3","type":"blocks","created_at":"2025-12-17T21:19:11.255362-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.056934-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh.10","type":"blocks","created_at":"2025-12-17T21:19:11.234175-08:00","created_by":"daemon"}]} +{"id":"bd-aydr.9","title":"Add .beads-backup-* pattern to gitignore template","description":"Update the gitignore template in doctor package to include backup directories.\n\n## Change\nAdd `.beads-backup-*/` to the GitignoreTemplate in `cmd/bd/doctor/gitignore.go`\n\n## Why\nBackup directories created by `bd reset --backup` should not be committed to git.\nThey are local-only recovery tools.\n\n## File\n`cmd/bd/doctor/gitignore.go` - look for GitignoreTemplate constant","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-13T08:49:42.453483+11:00","updated_at":"2025-12-13T09:16:44.201889+11:00","closed_at":"2025-12-13T09:16:44.201889+11:00","dependencies":[{"issue_id":"bd-aydr.9","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:49:42.453886+11:00","created_by":"daemon"}]} +{"id":"bd-tvu3","title":"Improve test coverage for internal/beads (48.1% ā†’ 70%)","description":"The beads package is a core package with 48.1% coverage. As the primary package for issue management, it should have at least 70% coverage.\n\nCurrent coverage: 48.1%\nTarget coverage: 70%","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-13T20:42:59.739142-08:00","updated_at":"2025-12-13T21:01:14.874359-08:00"} +{"id":"bd-n386","title":"Improve test coverage for internal/daemon (27.3% ā†’ 60%)","description":"The daemon package has only 27.3% test coverage. The daemon is critical for background operations and reliability.\n\nKey areas needing tests:\n- Daemon autostart logic\n- Socket handling\n- PID file management\n- Health checks\n\nCurrent coverage: 27.3%\nTarget coverage: 60%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:00.895238-08:00","updated_at":"2025-12-13T21:01:17.274438-08:00"} +{"id":"bd-lo4","title":"Test pinned issue","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-18T21:44:49.031385-08:00","updated_at":"2025-12-18T21:47:25.055109-08:00","deleted_at":"2025-12-18T21:47:25.055109-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-nuh1","title":"GH#403: bd doctor --fix circular error message","description":"bd doctor --fix suggests running bd doctor --fix for deletions manifest issue. Fix to provide actual resolution. See GitHub issue #403.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:16.290018-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-zc3","title":"Add --pinned and --no-pinned flags to bd list","description":"Add filtering flags to bd list: --pinned shows only pinned issues, --no-pinned excludes pinned issues. Default behavior shows all issues with a pin indicator.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:29.518028-08:00","updated_at":"2025-12-18T23:33:29.518028-08:00","dependencies":[{"issue_id":"bd-zc3","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.486361-08:00","created_by":"daemon"},{"issue_id":"bd-zc3","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.256764-08:00","created_by":"daemon"}]} +{"id":"bd-b3og","title":"Fix TestImportBugIntegration deadlock in importer_test.go","description":"Code health review found internal/importer/importer_test.go has TestImportBugIntegration skipped with:\n\nTODO: Test hangs due to database deadlock - needs investigation\n\nThis indicates a potential unresolved concurrency issue in the importer. The test has been skipped for an unknown duration.\n\nFix: Investigate the deadlock, fix the underlying issue, and re-enable the test.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T18:17:22.103838-08:00","updated_at":"2025-12-17T23:13:40.529671-08:00","closed_at":"2025-12-17T17:25:26.645901-08:00","dependencies":[{"issue_id":"bd-b3og","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.740642-08:00","created_by":"daemon"}]} +{"id":"bd-pbh.15","title":"Monitor npm publish","description":"Watch the npm publish action:\nhttps://github.com/steveyegge/beads/actions/workflows/npm-publish.yml\n\nVerify at: https://www.npmjs.com/package/@anthropics/claude-code-beads-plugin/v/0.30.4\n\nCheck:\n```bash\nnpm view @anthropics/claude-code-beads-plugin@0.30.4 version\n```\n\n\n```verify\nnpm view @anthropics/claude-code-beads-plugin@0.30.4 version 2\u003e/dev/null | grep -q '0.30.4'\n```","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.091806-08:00","updated_at":"2025-12-17T21:46:46.333213-08:00","closed_at":"2025-12-17T21:46:46.333213-08:00","dependencies":[{"issue_id":"bd-pbh.15","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.092205-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.15","depends_on_id":"bd-pbh.12","type":"blocks","created_at":"2025-12-17T21:19:11.301843-08:00","created_by":"daemon"}]} +{"id":"bd-io8c","title":"Improve test coverage for internal/syncbranch (33.0% ā†’ 70%)","description":"The syncbranch package has only 33.0% test coverage. This package handles git sync operations and is critical for data integrity.\n\nCurrent coverage: 33.0%\nTarget coverage: 70%","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-13T20:43:02.079145-08:00","updated_at":"2025-12-13T21:01:14.972533-08:00"} +{"id":"bd-2vh3","title":"Ephemeral issue cleanup and history compaction","description":"## Problem\n\nBeads history grows without bound. Every message, handoff, work assignment\nstays in issues.jsonl forever. Enterprise users will balk at \"git as database.\"\n\n## Solution: Two-Tier Cleanup\n\n### Tier 1: Ephemeral Cleanup (v1)\n\nbd cleanup --ephemeral --closed\n\n- Deletes closed issues where ephemeral=true from issues.jsonl\n- Safe: only removes explicitly marked ephemeral + closed\n- Preserves git history (commits still exist)\n- Run after swarm completion\n\n### Tier 2: History Compaction (v2)\n\nbd compact --squash\n\n- Rewrites issues.jsonl to remove tombstones\n- Optionally squashes git history (interactive rebase equivalent)\n- Preserves Merkle proofs for deleted items\n- Advanced: cold storage tiering\n\n## HOP Context\n\n| Layer | HOP Role | Persistence |\n|-------|----------|-------------|\n| Execution trace | None | Ephemeral |\n| Work scaffolding | None | Summarizable |\n| Work outcome | CV entry | Permanent |\n| Validation record | Stake proof | Permanent |\n\n\"Execution is ephemeral. Outcomes are permanent. You can't squash your CV.\"\n\n## Success Criteria\n\n- After cleanup --ephemeral: issues.jsonl only contains persistent work\n- Work outcomes preserved (CV entries)\n- Validation records preserved (stake proofs)\n- Execution scaffolding removed (transient coordination)","status":"open","priority":1,"issue_type":"feature","created_at":"2025-12-20T21:02:20.101367-08:00","updated_at":"2025-12-20T21:02:20.101367-08:00"} +{"id":"bd-g9eu","title":"Investigate TestRoutingIntegration failure","description":"TestRoutingIntegration/maintainer_with_SSH_remote failed during pre-commit check with \"expected role maintainer, got contributor\".\nThis occurred while running `go test -short ./...` on darwin/arm64.\nThe failure appears unrelated to storage/sqlite changes.\nNeed to investigate if this is a flaky test or environmental issue.","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-20T15:55:19.337094-08:00","updated_at":"2025-11-20T15:55:19.337094-08:00"} +{"id":"bd-qqc.13","title":"Upgrade beads-mcp to {{version}}","description":"Upgrade the MCP server via pip:\n\n```bash\npip install --upgrade beads-mcp\npip show beads-mcp | grep Version # Verify {{version}}\n```\n\nNote: Restart Claude Code or MCP session to use new version.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:08:04.318233-08:00","updated_at":"2025-12-18T23:09:05.77824-08:00","closed_at":"2025-12-18T23:09:05.77824-08:00","dependencies":[{"issue_id":"bd-qqc.13","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T23:08:04.318709-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.13","depends_on_id":"bd-qqc.11","type":"blocks","created_at":"2025-12-18T23:08:19.927825-08:00","created_by":"daemon"}]} +{"id":"bd-s0qf","title":"GH#405: Fix prefix parsing with hyphens - multi-hyphen prefixes parsed incorrectly","description":"Fixed: ExtractIssuePrefix was falling back to first-hyphen for word-like suffixes, breaking multi-hyphen prefixes like 'hacker-news' and 'me-py-toolkit'.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:13:56.951359-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-qqc.6","title":"Create git tag v{{version}}","description":"Create the release tag:\n\n```bash\ngit tag v{{version}}\n```\n\nVerify: `git tag | grep {{version}}`","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T13:00:15.495086-08:00","updated_at":"2025-12-18T23:34:18.632308-08:00","closed_at":"2025-12-18T22:41:41.874099-08:00","dependencies":[{"issue_id":"bd-qqc.6","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T13:00:15.496036-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.6","depends_on_id":"bd-qqc.5","type":"blocks","created_at":"2025-12-18T13:01:07.478315-08:00","created_by":"stevey"}]} +{"id":"bd-aec5439f","title":"Update LINTING.md with current baseline","description":"After cleanup, document the remaining acceptable baseline in LINTING.md so we can track regression.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-27T18:53:10.38679-07:00","updated_at":"2025-12-17T22:58:34.564854-08:00","closed_at":"2025-12-17T22:58:34.564854-08:00"} +{"id":"bd-sumr","title":"Merge: bd-t4sb","description":"branch: polecat/capable\ntarget: main\nsource_issue: bd-t4sb\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:22:21.343724-08:00","updated_at":"2025-12-19T23:22:21.343724-08:00"} +{"id":"bd-qqc.8","title":"Create and push git tag v{{version}}","description":"Create the release tag and push it:\n\n```bash\ngit tag v{{version}}\ngit push origin v{{version}}\n```\n\nThis triggers the GoReleaser GitHub Action to build release binaries.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:34.659927-08:00","updated_at":"2025-12-18T22:47:14.054232-08:00","closed_at":"2025-12-18T22:47:14.054232-08:00","dependencies":[{"issue_id":"bd-qqc.8","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:34.660248-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.8","depends_on_id":"bd-vgi5","type":"blocks","created_at":"2025-12-18T22:43:21.209529-08:00","created_by":"daemon"}]} +{"id":"bd-pbh.1","title":"Update cmd/bd/version.go to 0.30.4","description":"Update the Version constant in cmd/bd/version.go:\n```go\nVersion = \"0.30.4\"\n```\n\n\n```verify\ngrep -q 'Version = \"0.30.4\"' cmd/bd/version.go\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.9462-08:00","updated_at":"2025-12-17T21:46:46.20387-08:00","closed_at":"2025-12-17T21:46:46.20387-08:00","dependencies":[{"issue_id":"bd-pbh.1","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.946633-08:00","created_by":"daemon"}]} +{"id":"bd-aydr.7","title":"Add integration tests for bd reset command","description":"End-to-end integration tests for the reset command.\n\n## Test Scenarios\n\n### Basic reset\n1. Init beads, create some issues\n2. Run bd reset --force\n3. Verify .beads/ is fresh, issues gone\n\n### Hard reset\n1. Init beads, create issues, commit\n2. Run bd reset --hard --force \n3. Verify git history has reset commits\n\n### Backup functionality\n1. Init beads, create issues\n2. Run bd reset --backup --force\n3. Verify backup exists with correct contents\n4. Verify main .beads/ is reset\n\n### Dry run\n1. Init beads, create issues\n2. Run bd reset --dry-run\n3. Verify nothing changed\n\n### Confirmation prompt\n1. Init beads\n2. Run bd reset (no --force)\n3. Verify prompts for confirmation\n4. Test both y and n responses\n\n## Location\ntests/integration/reset_test.go or similar","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:58.479282+11:00","updated_at":"2025-12-13T06:24:29.561908-08:00","closed_at":"2025-12-13T10:15:59.221637+11:00","dependencies":[{"issue_id":"bd-aydr.7","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:58.479686+11:00","created_by":"daemon"},{"issue_id":"bd-aydr.7","depends_on_id":"bd-aydr.4","type":"blocks","created_at":"2025-12-13T08:45:11.15972+11:00","created_by":"daemon"}]} +{"id":"bd-uutv","title":"Work on beads-rs0: Namepool configuration for themed pole...","description":"Work on beads-rs0: Namepool configuration for themed polecat names. See bd show beads-rs0 for full details.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T21:49:48.129778-08:00","updated_at":"2025-12-19T21:59:25.565894-08:00","closed_at":"2025-12-19T21:59:25.565894-08:00"} +{"id":"bd-06px","title":"bd sync --from-main fails: unknown flag --no-git-history","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-17T14:32:02.998106-08:00","updated_at":"2025-12-17T23:13:40.531756-08:00","closed_at":"2025-12-17T17:21:48.506039-08:00"} +{"id":"bd-401h","title":"Work on beads-7jl: Fix Windows installer file locking iss...","description":"Work on beads-7jl: Fix Windows installer file locking issue (GH#652). Close file handle before extraction in postinstall.js. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:57.873767-08:00","updated_at":"2025-12-19T23:20:05.747664-08:00","closed_at":"2025-12-19T23:20:05.747664-08:00"} +{"id":"bd-2q6d","title":"Beads commands operate on stale database without warning","description":"All beads read operations should validate database is in sync with JSONL before proceeding.\n\n**Current Behavior:**\n- Commands can query/read from stale database\n- Only mutation operations (like 'bd sync') check if JSONL is newer\n- User gets incorrect results without realizing database is out of sync\n\n**Expected Behavior:**\n- All beads commands should have pre-flight check for database freshness\n- If JSONL is newer than database, refuse to operate with error: \"Database out of sync. Run 'bd import' first.\"\n- Same safety check that exists for 'bd sync' should apply to ALL operations\n\n**Impact:**\n- Users make decisions based on incomplete/outdated data\n- Silent failures lead to confusion (e.g., thinking issues don't exist when they do)\n- Similar to running git commands on stale repo without being warned to pull\n\n**Example:**\n- Searched for bd-g9eu issue file: not found\n- Issue exists in .beads/issues.jsonl (in git)\n- Database was stale, but no warning was given\n- Led to incorrect conclusion that issue was already closed/deleted","notes":"## Implementation Complete\n\n**Phase 1: Created staleness check (cmd/bd/staleness.go)**\n- ensureDatabaseFresh() function checks JSONL mtime vs last_import_time\n- Returns error with helpful message when database is stale\n- Auto-skips in daemon mode (daemon has auto-import)\n\n**Phase 2: Added to all read commands**\n- list, show, ready, status, stale, info, duplicates, validate\n- Check runs before database queries in direct mode\n- Daemon mode already protected via checkAndAutoImportIfStale()\n\n**Phase 3: Code Review Findings**\nSee follow-up issues:\n- bd-XXXX: Add warning when staleness check errors\n- bd-YYYY: Improve CheckStaleness error handling\n- bd-ZZZZ: Refactor redundant daemon checks (low priority)\n\n**Testing:**\n- Build successful: go build ./cmd/bd\n- Binary works: ./bd --version\n- Ready for manual testing\n\n**Next Steps:**\n1. Test with stale database scenario\n2. Implement review improvements\n3. Close issue when tests pass","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-20T19:33:40.019297-05:00","updated_at":"2025-12-17T23:13:40.535149-08:00","closed_at":"2025-12-17T19:11:12.982639-08:00"} +{"id":"bd-siz1","title":"GH#532: bd sync circular error (suggests running bd sync)","description":"bd sync error message recommends running bd sync to fix the bd sync error. Fix error handling to provide useful guidance. See GitHub issue #532.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:04:00.543573-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-z8a6","title":"bd delete --from-file should add deleted issues to deletions manifest","description":"When using bd delete --from-file to bulk delete issues, the deleted issue IDs are not being added to the deletions.jsonl manifest.\n\nThis causes those issues to be resurrected during bd sync when git history scanning finds them in old commits.\n\nExpected: All deleted issues should be added to deletions.jsonl so they wont be reimported from git history.\n\nWorkaround: Manually add deletion records to deletions.jsonl.","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T01:48:14.099855-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-3ggb","title":"Rebuild local binary","description":"Build and verify: go build -o bd ./cmd/bd \u0026\u0026 ./bd version","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:03.101428-08:00","updated_at":"2025-12-18T22:46:40.955673-08:00","closed_at":"2025-12-18T22:46:40.955673-08:00","dependencies":[{"issue_id":"bd-3ggb","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.748289-08:00","created_by":"daemon"},{"issue_id":"bd-3ggb","depends_on_id":"bd-4y4g","type":"blocks","created_at":"2025-12-18T22:43:20.950376-08:00","created_by":"daemon"}]} +{"id":"bd-adoe","title":"Add --hard flag to bd cleanup to permanently cull tombstones before cutoff date","description":"Currently tombstones persist for 30 days before cleanup prunes them. Need an official way to force-cull tombstones earlier than the default TTL, for scenarios like cleaning house after extended absence where resurrection from old clones is not a concern. Proposed: bd cleanup --hard --older-than N to bypass the 30-day tombstone TTL.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:17:31.064914-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} +{"id":"bd-n777","title":"Timer beads for scheduled agent callbacks","description":"## Problem\n\nAgents frequently need to wait for external events (CI completion, PR reviews, artifact builds) but have no good mechanism:\n- `sleep N` blocks and is unreliable (often times out at 8+ minutes)\n- Polling wastes context and is easy to forget\n- No way to survive session restarts\n\n## Proposal: Timer Beads\n\nA new bead type or field that represents a scheduled callback:\n\n### Creating timers\n```bash\nbd timer create --in 30s --callback \"Check CI run 12345\" --issue bd-xyz\nbd timer create --at \"2025-12-20T08:00:00\" --callback \"Morning standup\"\nbd timer create --in 5m --on-expire \"tmux send-keys -t dave 'bd show bd-xyz'\"\n```\n\n### Timer storage\n- Store in beads (survives restarts)\n- Fields: `expires_at`, `callback_description`, `on_expire_command`, `linked_issue`\n- Status: pending, fired, cancelled\n\n### Deacon integration\nThe Deacon daemon monitors timer beads:\n1. Wakes on next timer expiry\n2. Executes `on_expire` command (e.g., tmux send-keys to interrupt agent)\n3. Marks timer as fired\n4. Optionally updates linked issue\n\n### Use cases\n- CI monitoring: \"ping me when build completes\"\n- PR reviews: \"check back in 1 hour\"\n- Scheduled tasks: \"remind me at EOD to sync\"\n- Blocking waits: agent registers callback instead of sleeping\n\n## Acceptance criteria\n- [ ] Timer bead type or field design\n- [ ] `bd timer create/list/cancel` commands\n- [ ] Deacon timer monitoring loop\n- [ ] tmux integration for agent interrupts\n- [ ] Survives daemon restarts","status":"open","priority":2,"issue_type":"feature","created_at":"2025-12-19T23:05:33.051861-08:00","updated_at":"2025-12-19T23:05:33.051861-08:00"} +{"id":"bd-o55a","title":"GH#509: bd doesn't find .beads when running from nested worktrees","description":"When worktrees are nested under main repo (.worktrees/feature/), bd stops at worktree git root instead of continuing to find .beads in parent. See GitHub issue #509 for detailed fix suggestion.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:20.281591-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-au0.7","title":"Audit and standardize JSON output across all commands","description":"Ensure consistent JSON format and error handling when --json flag is used.\n\n**Scope:**\n1. Verify all commands respect --json flag\n2. Standardize success response format\n3. Standardize error response format\n4. Document JSON schemas\n\n**Commands to audit:**\n- Core CRUD: create, update, delete, show, list, search āœ“\n- Queries: ready, blocked, stale, count, stats, status\n- Deps: dep add/remove/tree/cycles\n- Labels: label commands\n- Comments: comments add/list/delete\n- Epics: epic status/close-eligible\n- Export/import: already support --json āœ“\n\n**Testing:**\n- Success cases return valid JSON\n- Error cases return valid JSON (not plain text)\n- Consistent field naming (snake_case vs camelCase)\n- Array vs object wrapping consistency","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-21T21:07:35.304424-05:00","updated_at":"2025-11-21T21:07:35.304424-05:00","dependencies":[{"issue_id":"bd-au0.7","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:35.305663-05:00","created_by":"daemon"}]} +{"id":"bd-hlsw","title":"Add sync resilience guardrails for forced pushes and prefix mismatches","description":"Beads can get into unrecoverable sync states when remote forces pushes occur (e.g., rebases) combined with prefix mismatches from multi-worker scenarios. Add detection, prevention, and auto-recovery features to handle this gracefully.","status":"open","priority":2,"issue_type":"epic","created_at":"2025-12-14T10:40:14.872875259-07:00","updated_at":"2025-12-14T10:40:14.872875259-07:00"} +{"id":"bd-589x","title":"HANDOFF: Version 0.30.7 release in progress","description":"## Context\nDoing a 0.30.7 patch release with bug fixes.\n\n## What's done\n- Fixed #657: bd graph nil pointer crash (graph.go:102)\n- Fixed #652: Windows npm installer file lock (postinstall.js)\n- Updated CHANGELOG.md and info.go\n- Pushed to main, CI running (run 20390861825)\n- Created version-bump molecule template (bd-6s61) and instantiated for 0.30.7 (bd-8pyn)\n\n## In progress\nMolecule bd-8pyn has 3 remaining tasks:\n - bd-dxo7: Wait for CI to pass\n - bd-7l70: Verify release artifacts \n - bd-5c91: Update local installation\n\n## Check CI\n gh run list --repo steveyegge/beads --limit 1\n gh run view 20390861825 --repo steveyegge/beads\n\n## New feature filed\nbd-n777: Timer beads for scheduled agent callbacks\nDesign for Deacon-managed timers that can interrupt agents via tmux\n\n## Resume commands\n bd --no-daemon show bd-8pyn\n gh run list --repo steveyegge/beads --limit 1","status":"closed","priority":2,"issue_type":"message","created_at":"2025-12-19T23:06:14.902334-08:00","updated_at":"2025-12-20T00:49:51.927111-08:00","closed_at":"2025-12-20T00:25:59.596546-08:00"} +{"id":"bd-7h5","title":"Add pinned field to issue schema","description":"Add boolean 'pinned' field to the issue schema. When true, the issue is marked as a persistent context marker that should not be treated as a work item.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:26.767247-08:00","updated_at":"2025-12-19T00:08:59.854605-08:00","closed_at":"2025-12-19T00:08:59.854605-08:00","dependencies":[{"issue_id":"bd-7h5","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:55.98635-08:00","created_by":"daemon"}]} +{"id":"bd-8v2","title":"Add {{version}} to versionChanges in info.go","description":"Add new entry at TOP of versionChanges in cmd/bd/info.go with release notes from CHANGELOG.md. Must do before bump-version.sh --commit.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:00.482846-08:00","updated_at":"2025-12-18T22:45:21.465817-08:00","closed_at":"2025-12-18T22:45:21.465817-08:00","dependencies":[{"issue_id":"bd-8v2","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.496649-08:00","created_by":"daemon"},{"issue_id":"bd-8v2","depends_on_id":"bd-kyo","type":"blocks","created_at":"2025-12-18T22:43:20.69619-08:00","created_by":"daemon"}]} +{"id":"bd-fi05","title":"bd sync fails with orphaned issues and duplicate ID conflict","description":"After fixing the deleted_at TEXT column scanning bug (commit 18b1eb2), bd sync still fails with two issues:\n\n1. Orphan Detection Warning: 12 orphaned child issues whose parents no longer exist (bd-cb64c226.* and bd-cbed9619.*)\n\n2. Import Failure: UNIQUE constraint failed for bd-360 - this tombstone exists in both DB and JSONL\n\nError: \"Import failed: error creating depth-0 issues: bulk insert issues: failed to insert issue bd-360: sqlite3: constraint failed: UNIQUE constraint failed: issues.id\"\n\nFix options:\n- Delete orphaned child issues with bd delete\n- Resolve bd-360 duplicate (in deletions.jsonl vs tombstone in DB)\n- Reset sync branch: git branch -f beads-sync main \u0026\u0026 git push --force-with-lease origin beads-sync","notes":"Fixed tombstone constraint violation bug. When deleting closed issues, the CHECK constraint (status = 'closed') = (closed_at IS NOT NULL) was violated because CreateTombstone didn't clear closed_at. Fix: set closed_at = NULL in tombstone creation SQL.\n\nThe sync data corruption (orphaned issues in beads-sync branch) requires manual cleanup: reset sync branch with 'git branch -f beads-sync main \u0026\u0026 git push --force-with-lease origin beads-sync'","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-13T07:14:33.831346-08:00","updated_at":"2025-12-13T10:50:48.545465-08:00","closed_at":"2025-12-13T07:30:33.843986-08:00"} +{"id":"bd-kwro.11","title":"Documentation for messaging and graph links","description":"Document all new features.\n\nFiles to update:\n- README.md - brief mention of messaging capability\n- AGENTS.md - update for AI agents using bd mail\n- docs/messaging.md (new) - full messaging reference\n- docs/graph-links.md (new) - graph link reference\n- CHANGELOG.md - v0.30.2 release notes\n\nTopics to cover:\n- Mail commands with examples\n- Graph link types and use cases\n- Identity configuration\n- Hooks setup for notifications\n- Migration notes","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T03:02:39.548518-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-b6xo","title":"Remove or fix ClearDirtyIssues() - race condition risk (bd-52)","description":"Code health review found internal/storage/sqlite/dirty.go still exposes old ClearDirtyIssues() method (lines 103-108) which clears ALL dirty issues without checking what was actually exported.\n\nData loss risk: If export fails after some issues written to JSONL but before ClearDirtyIssues called, changes to remaining dirty issues will be lost.\n\nThe safer ClearDirtyIssuesByID() (lines 113-132) exists and clears only exported issues.\n\nFix: Either remove old method or mark it deprecated and ensure no code paths use it.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T18:17:20.534625-08:00","updated_at":"2025-12-17T23:13:40.530703-08:00","closed_at":"2025-12-17T18:59:18.693791-08:00","dependencies":[{"issue_id":"bd-b6xo","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.633738-08:00","created_by":"daemon"}]} +{"id":"bd-qqc.5","title":"Commit release v{{version}}","description":"Stage and commit the version bump:\n\n```bash\ngit add cmd/bd/version.go cmd/bd/info.go CHANGELOG.md\ngit commit -m \"release: v{{version}}\"\n```\n\nDo NOT push yet - tag first.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T13:00:04.097628-08:00","updated_at":"2025-12-18T23:34:18.630946-08:00","closed_at":"2025-12-18T22:41:41.864839-08:00","dependencies":[{"issue_id":"bd-qqc.5","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T13:00:04.098265-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.5","depends_on_id":"bd-qqc.4","type":"blocks","created_at":"2025-12-18T13:01:02.275008-08:00","created_by":"stevey"}]} +{"id":"bd-gocx","title":"Run bump-version.sh 0.32.1","description":"Execute ./scripts/bump-version.sh 0.32.1 to update all version references","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:18.470174-08:00","updated_at":"2025-12-20T21:54:54.500836-08:00","closed_at":"2025-12-20T21:54:54.500836-08:00","dependencies":[{"issue_id":"bd-gocx","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:18.471793-08:00","created_by":"daemon"},{"issue_id":"bd-gocx","depends_on_id":"bd-x3j8","type":"blocks","created_at":"2025-12-20T21:53:29.688436-08:00","created_by":"daemon"}]} +{"id":"bd-jgxi","title":"Auto-migrate database on CLI version bump","description":"When CLI is upgraded (e.g., 0.24.0 ā†’ 0.24.1), database version becomes stale. Add auto-migration in PersistentPreRun or daemon startup. Check dbVersion != CLIVersion and run bd migrate automatically. Fixes recurring UX issue where bd doctor shows version mismatch after every CLI upgrade.","status":"closed","issue_type":"feature","created_at":"2025-11-21T23:16:09.004619-08:00","updated_at":"2025-12-17T23:13:40.535453-08:00","closed_at":"2025-12-17T17:15:43.605762-08:00","dependencies":[{"issue_id":"bd-jgxi","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:09.005513-08:00","created_by":"daemon"}]} +{"id":"bd-au0.10","title":"Add global verbosity flags (--verbose, --quiet)","description":"Add consistent verbosity controls across all commands.\n\n**Current state:**\n- bd init has --quiet flag\n- No other commands have verbosity controls\n- Debug output controlled by BD_VERBOSE env var\n\n**Proposal:**\nAdd persistent flags:\n- --verbose / -v: Enable debug output\n- --quiet / -q: Suppress non-essential output\n\n**Implementation:**\n- Add to rootCmd.PersistentFlags()\n- Replace BD_VERBOSE checks with flag checks\n- Standardize output levels:\n * Quiet: Errors only\n * Normal: Errors + success messages\n * Verbose: Errors + success + debug info\n\n**Files to modify:**\n- cmd/bd/main.go (add flags)\n- internal/debug/debug.go (respect flags)\n- Update all commands to respect quiet mode\n\n**Testing:**\n- Verify --verbose shows debug output\n- Verify --quiet suppresses normal output\n- Ensure errors always show regardless of mode","status":"open","priority":3,"issue_type":"task","created_at":"2025-11-21T21:08:21.600209-05:00","updated_at":"2025-11-21T21:08:21.600209-05:00","dependencies":[{"issue_id":"bd-au0.10","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:08:21.602557-05:00","created_by":"daemon"}]} +{"id":"bd-0a43","title":"Split monolithic sqlite.go into focused files","description":"internal/storage/sqlite/sqlite.go is 1050 lines containing initialization, 20+ CRUD methods, query building, and schema management.\n\nSplit into:\n- store.go: Store struct \u0026 initialization (150 lines)\n- bead_queries.go: Bead CRUD (300 lines)\n- work_queries.go: Work queries (200 lines) \n- stats_queries.go: Statistics (150 lines)\n- schema.go: Schema \u0026 migrations (150 lines)\n- helpers.go: Common utilities (100 lines)\n\nImpact: Impossible to understand at a glance; hard to find specific functionality; high cognitive load\n\nEffort: 6-8 hours","status":"closed","issue_type":"task","created_at":"2025-11-16T14:51:16.520465-08:00","updated_at":"2025-12-17T23:13:40.533947-08:00","closed_at":"2025-12-17T16:51:30.236012-08:00"} +{"id":"bd-abjw","title":"Consider consolidating config.yaml parsing into shared utility","description":"Multiple places parse config.yaml with custom structs:\n\n1. **autoimport.go:148** - `localConfig{SyncBranch}`\n2. **main.go:310** - strings.Contains for no-db (fragile, see bd-r6k2)\n3. **doctor.go:863** - strings.Contains for no-db (fragile, see bd-r6k2)\n4. **internal/config/config.go** - Uses viper (but caches at startup, problematic for tests)\n\nConsider creating a shared utility in `internal/configfile/` or extending the viper config:\n\n```go\n// internal/configfile/yaml.go\ntype YAMLConfig struct {\n SyncBranch string `yaml:\"sync-branch\"`\n NoDb bool `yaml:\"no-db\"`\n IssuePrefix string `yaml:\"issue-prefix\"`\n Author string `yaml:\"author\"`\n}\n\nfunc LoadYAML(beadsDir string) (*YAMLConfig, error) {\n // Parse config.yaml with proper YAML library\n}\n```\n\nBenefits:\n- Single source of truth for config.yaml structure\n- Proper YAML parsing everywhere\n- Easier to add new config fields\n\nTrade-off: May add complexity for simple one-off reads.","status":"open","priority":4,"issue_type":"task","created_at":"2025-12-07T02:03:26.067311-08:00","updated_at":"2025-12-07T02:03:26.067311-08:00"} +{"id":"bd-j3il","title":"Add bd reset command for clean slate restart","description":"Implement a command to reset beads to a clean starting state.\n\n**Context:** GitHub issue #479 - users sometimes get beads into an invalid state after updates, and there's no clean way to start fresh. The git backup/restore mechanism that protects against accidental deletion also makes it hard to intentionally reset.\n\n**Current workaround** (from maphew):\n```bash\nbd daemons killall\ngit rm .beads/*.jsonl\ngit commit -m 'remove old issues'\nrm .beads/*\nbd init\nbd onboard\n```\n\n**Desired:** A proper `bd reset` command that handles this cleanly and safely.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-13T08:41:34.956552+11:00","updated_at":"2025-12-13T08:43:49.970591+11:00","closed_at":"2025-12-13T08:43:49.970591+11:00"} +{"id":"bd-rgd7","title":"Update CHANGELOG.md with release notes","description":"Add release notes for 0.32.1: MCP output control params (#667), pin field fix","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:16.031879-08:00","updated_at":"2025-12-20T21:54:07.982164-08:00","closed_at":"2025-12-20T21:54:07.982164-08:00","dependencies":[{"issue_id":"bd-rgd7","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:16.034926-08:00","created_by":"daemon"}]} +{"id":"bd-kwro.8","title":"Hooks System","description":"Implement hook system for extensibility.\n\nHook directory: .beads/hooks/\nHook files (executable scripts):\n- on_create - runs after bd create\n- on_update - runs after bd update \n- on_close - runs after bd close\n- on_message - runs after bd mail send\n\nHook invocation:\n- Pass issue ID as first argument\n- Pass event type as second argument\n- Pass JSON issue data on stdin\n- Run asynchronously (dont block command)\n\nExample hook (GGT notification):\n #!/bin/bash\n gt notify --event=$2 --issue=$1\n\nThis allows GGT to register notification handlers without Beads knowing about GGT.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:02:23.086393-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pbh.9","title":"Update hook templates to 0.30.4","description":"Update bd-hooks-version comment in all 4 hook templates:\n- cmd/bd/templates/hooks/pre-commit\n- cmd/bd/templates/hooks/post-merge\n- cmd/bd/templates/hooks/pre-push\n- cmd/bd/templates/hooks/post-checkout\n\nEach should have:\n```bash\n# bd-hooks-version: 0.30.4\n```\n\n\n```verify\ngrep -l 'bd-hooks-version: 0.30.4' cmd/bd/templates/hooks/* | wc -l | grep -q '4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.0248-08:00","updated_at":"2025-12-17T21:46:46.27561-08:00","closed_at":"2025-12-17T21:46:46.27561-08:00","dependencies":[{"issue_id":"bd-pbh.9","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.025124-08:00","created_by":"daemon"}]} +{"id":"bd-o9o","title":"Exclude pinned issues from bd ready","description":"Update bd ready to exclude pinned issues. Pinned issues are context markers, not work items, and should never appear in the ready-to-work list.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:41.979073-08:00","updated_at":"2025-12-18T23:33:41.979073-08:00","dependencies":[{"issue_id":"bd-o9o","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.392931-08:00","created_by":"daemon"},{"issue_id":"bd-o9o","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.612655-08:00","created_by":"daemon"}]} +{"id":"bd-kpy","title":"Sync race: rebase-based divergence recovery resurrects tombstones","description":"## Problem\nWhen two repos sync simultaneously, tombstones can be resurrected:\n\n1. Repo A deletes issue (creates tombstone), pushes to sync branch\n2. Repo B (with 'closed' status) exports and tries to push\n3. Push fails (non-fast-forward)\n4. fetchAndRebaseInWorktree does git rebase\n5. Git rebase applies B's 'closed' patch on top of A's 'tombstone'\n6. TEXT-level rebase doesn't invoke beads merge driver\n7. 'closed' overwrites 'tombstone' = resurrection\n\n## Root Cause\nCommitToSyncBranch uses git rebase for divergence recovery, but rebase is text-level, not content-level. The proper content-level merge in PullFromSyncBranch handles tombstones correctly, but it runs AFTER the problematic push.\n\n## Proposed Fix\nOption 1: Don't push in CommitToSyncBranch - let PullFromSyncBranch handle merge+push\nOption 2: Replace git rebase with content-level merge in fetchAndRebaseInWorktree\nOption 3: Reorder sync steps: Export ā†’ Pull/Merge ā†’ Commit ā†’ Push\n\n## Workaround Applied\nExcluded tombstones from orphan detection warnings (commit 1e97d9cc).\n\nSee also: bd-3852 (Add orphan detection migration)","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-17T23:29:33.049272-08:00","updated_at":"2025-12-17T23:29:33.049272-08:00"} +{"id":"bd-jvu","title":"Add bd update --parent flag to change issue parent","description":"Allow changing an issue's parent with bd update --parent \u003cnew-parent-id\u003e. Useful for reorganizing tasks under different epics or moving issues between hierarchies. Should update the parent-child dependency relationship.","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-17T22:24:07.274485-08:00","updated_at":"2025-12-17T22:34:07.318938-08:00","closed_at":"2025-12-17T22:34:07.318938-08:00"} +{"id":"bd-6pc","title":"Implement bd pin/unpin commands","description":"Add 'bd pin \u003cid\u003e' and 'bd unpin \u003cid\u003e' commands to toggle the pinned status of issues. Should support multiple IDs like other bd commands.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:28.292937-08:00","updated_at":"2025-12-19T17:43:35.713398-08:00","closed_at":"2025-12-19T00:35:31.612589-08:00","dependencies":[{"issue_id":"bd-6pc","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.119852-08:00","created_by":"daemon"},{"issue_id":"bd-6pc","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.352848-08:00","created_by":"daemon"}]} +{"id":"bd-14ie","title":"Work on beads-2vn: Add simple built-in beads viewer (GH#6...","description":"Work on beads-2vn: Add simple built-in beads viewer (GH#654). Add bd list --pretty with --watch flag, tree view with priority/status symbols. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:47.305831-08:00","updated_at":"2025-12-20T00:26:12.605897-08:00","closed_at":"2025-12-19T23:23:13.928323-08:00"} +{"id":"bd-0kai","title":"Work on beads-ocs: Thin shim hooks to eliminate version d...","description":"Work on beads-ocs: Thin shim hooks to eliminate version drift (GH#615). Replace full hook scripts with thin shims that call bd hooks run. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:57:22.91347-08:00","updated_at":"2025-12-20T00:49:51.926425-08:00","closed_at":"2025-12-19T23:24:08.828172-08:00"} +{"id":"bd-z86n","title":"Code Review: PR #551 - Persist close_reason to issues table","description":"Code review of PR #551 which fixes close_reason persistence bug.\n\n## Summary\nThe PR correctly fixes a bug where close_reason was only stored in the events table, not in the issues.close_reason column. This caused `bd show --json` to return empty close_reason.\n\n## What Was Fixed\n- āœ… CloseIssue now updates both close_reason and closed_at\n- āœ… ReOpenIssue clears both close_reason and closed_at\n- āœ… Comprehensive tests added for both storage and CLI layers\n- āœ… Clear documentation in queries.go about dual storage strategy\n\n## Quality Assessment\nāœ… Tests cover both storage layer and CLI JSON output\nāœ… Handles reopen case (clearing close_reason)\nāœ… Good comments explaining dual-storage design\nāœ… No known issues\n\n## Potential Followups\nSee linked issues for suggestions.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:06.887069-08:00","updated_at":"2025-12-14T14:25:06.887069-08:00"} +{"id":"bd-u0sb","title":"Merge: bd-uqfn","description":"branch: polecat/cheedo\ntarget: main\nsource_issue: bd-uqfn\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-20T01:11:52.033964-08:00","updated_at":"2025-12-20T01:11:52.033964-08:00"} +{"id":"bd-qioh","title":"Standardize error handling: replace direct fmt.Fprintf+os.Exit with FatalError","description":"Code health review found inconsistent error handling patterns:\n\nPattern A (preferred): FatalError() from errors.go:21-24\nPattern B (inconsistent): Direct fmt.Fprintf(os.Stderr) + os.Exit(1)\n\nAffected files:\n- delete.go:35-49 uses direct pattern\n- create.go:213 ignores error silently\n- Various other commands\n\nFix: Standardize on FatalError() wrapper for consistent error messages and testability.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-16T18:17:19.309394-08:00","updated_at":"2025-12-16T18:17:19.309394-08:00","dependencies":[{"issue_id":"bd-qioh","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.953559-08:00","created_by":"daemon"}]} +{"id":"bd-t4sb","title":"Work on beads-d8h: Fix prefix mismatch false positive wit...","description":"Work on beads-d8h: Fix prefix mismatch false positive with multi-hyphen prefixes like 'asianops-audit-' (GH#422). When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:19.545069-08:00","updated_at":"2025-12-20T00:26:12.606657-08:00","closed_at":"2025-12-19T23:21:45.471711-08:00"} +{"id":"bd-y4vz","title":"Work on beads-eub: Consolidated context tool for MCP serv...","description":"Work on beads-eub: Consolidated context tool for MCP server (GH#636). Merge set_context, where_am_i, init into single 'context' tool. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:58.527144-08:00","updated_at":"2025-12-20T00:49:51.929597-08:00","closed_at":"2025-12-19T23:31:11.906952-08:00"} +{"id":"bd-tggf","title":"Code Health Review Dec 2025: Technical Debt Cleanup","description":"Epic grouping technical debt identified in the Dec 16, 2025 code health review.\n\n## Overall Health Grade: B (Solid foundation, needs cleanup)\n\n### P1 (High Priority):\n- bd-74w1: Consolidate duplicate path-finding utilities\n- bd-b6xo: Remove/fix ClearDirtyIssues() race condition\n- bd-b3og: Fix TestImportBugIntegration deadlock\n\n### P2 (Medium Priority):\n- bd-05a8: Split large files (doctor.go, sync.go)\n- bd-qioh: Standardize error handling patterns\n- bd-rgyd: Split queries.go (1586 lines)\n- bd-9g1z: Fix/remove TestFindJSONLPathDefault\n\n### P3 (Low Priority):\n- bd-ork0: Add comments to 30+ ignored errors\n- bd-4nqq: Remove dead test code in info_test.go\n- bd-dhza: Reduce global state in main.go\n\n## Key Areas:\n1. Code duplication in path utilities\n2. Large monolithic files (5 files \u003e1000 lines)\n3. Global state (25+ variables, 3 deprecated)\n4. Silent error suppression (30+ instances)\n5. Test gaps and dead test code\n6. Atomicity risks in batch operations","status":"open","priority":2,"issue_type":"epic","created_at":"2025-12-16T18:18:58.115507-08:00","updated_at":"2025-12-16T18:21:50.561709-08:00"} +{"id":"bd-5qim","title":"Optimize GetReadyWork performance - 752ms on 10K database (target: \u003c50ms)","notes":"# Performance Analysis (10K Issue Database)\n\nAnalyzed using CPU profiles from benchmark suite on Apple M2 Pro.\n\n## Operation Performance\n\n| Operation | Time | Allocations | Memory |\n|----------------------------------|---------|-------------|--------|\n| bd ready (GetReadyWork) | ~752ms | 167,466 | 16MB |\n| bd list (SearchIssues no filter) | ~11.6ms | 89,214 | 5.8MB |\n| bd list (SearchIssues filtered) | ~9.2ms | 62,365 | 3.5MB |\n| bd create (CreateIssue) | ~2.6ms | 146 | 8.6KB |\n| bd update (UpdateIssue) | ~0.32ms | 364 | 15KB |\n| bd close (UpdateIssue) | ~0.32ms | 364 | 15KB |\n\n**Target: \u003c50ms for all operations on 10K database**\n\n**Current issue: GetReadyWork is 15x over target (752ms vs 50ms)**\n\n## Root Cause\n\nGetReadyWork (internal/storage/sqlite/ready.go:90-128) uses recursive CTE to propagate blocking:\n- 65x slower than SearchIssues\n- Recalculates entire blocked issue tree on every call\n- Algorithm:\n 1. Find directly blocked issues via 'blocks' dependencies\n 2. Recursively propagate blockage to descendants (max depth: 50)\n 3. Exclude all blocked issues from results\n\n## CPU Profile Analysis\n\n- Database syscalls (pthread_cond_signal, syscall6): ~75%\n- SQLite engine overhead: inherent to recursive CTE\n- Application code (query construction): \u003c1%\n\n**Bottleneck is the recursive CTE query execution, not application code.**\n\n## Optimization Recommendations\n\n### High Impact (Likely to achieve \u003c50ms target)\n\n1. **Cache blocked issue calculation**\n - Add `blocked_issues` table updated on dependency changes\n - Trade write complexity for read speed (ready called \u003e\u003e dependency changes)\n - Eliminates recursive CTE on every read\n\n2. **Add/verify database indexes**\n ```sql\n CREATE INDEX IF NOT EXISTS idx_dependencies_blocked \n ON dependencies(issue_id, type, depends_on_id);\n CREATE INDEX IF NOT EXISTS idx_issues_status \n ON issues(status);\n ```\n\n### Medium Impact\n\n3. **Reduce allocations** (167K allocations for GetReadyWork)\n - Profile `scanIssues()` for object pooling opportunities\n - Reuse slice capacity for repeated calls\n\n### Low Impact (Not recommended)\n- Query optimization for CRUD operations (already \u003c3ms)\n- Connection pooling tuning (not showing in profiles)\n\n## Verification\n\nRun benchmarks to validate optimization:\n```bash\nmake bench-quick\ngo tool pprof -http=:8080 internal/storage/sqlite/bench-cpu-*.prof\n```\n\nProfile files automatically generated in `internal/storage/sqlite/`.","status":"closed","issue_type":"bug","created_at":"2025-11-14T09:02:46.507526-08:00","updated_at":"2025-12-17T23:13:40.534258-08:00","closed_at":"2025-12-17T16:21:37.918868-08:00"} +{"id":"bd-3x9o","title":"Merge: bd-by0d","description":"branch: polecat/furiosa\ntarget: main\nsource_issue: bd-by0d\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:21:26.817906-08:00","updated_at":"2025-12-19T23:21:26.817906-08:00"} +{"id":"bd-kwro.5","title":"Graph Link: supersedes for version chains","description":"Implement supersedes link type for version tracking.\n\nNew command:\n- bd supersede \u003cid\u003e --with \u003cnew\u003e - marks id as superseded by new\n- Auto-closes the superseded issue\n\nQuery support:\n- bd show \u003cid\u003e shows 'Superseded by: \u003cnew\u003e'\n- bd show \u003cnew\u003e shows 'Supersedes: \u003cid\u003e'\n- bd list --superseded shows version chains\n\nStorage:\n- superseded_by column pointing to replacement issue\n\nUseful for design docs, specs, and evolving artifacts.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:41.749294-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-ykd9","title":"Add bd doctor --fix flag to automatically repair issues","description":"Implement a --fix flag for bd doctor that can automatically repair detected issues.\n\nRequirements:\n- Add --fix flag to bd doctor command\n- Show all fixable issues and prompt for confirmation before applying fixes\n- Organize fix implementations under doctor/fix/\u003ctype_of_fix\u003e.go\n- Each fix type should have its own file (e.g., doctor/fix/hooks.go, doctor/fix/sync.go)\n- Display what will be fixed and ask user to confirm (Y/n) before proceeding\n- Support fixing issues like:\n - Missing or broken git hooks\n - Sync problems with remote\n - File permission issues\n - Any other auto-repairable issues doctor detects\n\nImplementation notes:\n- Maintain separation between detection (existing doctor code) and repair (new fix code)\n- Each fix should be idempotent and safe to run multiple times\n- Provide clear output about what was fixed\n- Log any fixes that fail with actionable error messages","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-14T18:17:48.411264-08:00","updated_at":"2025-11-14T18:17:58.88609-08:00"} +{"id":"bd-vs9","title":"Fix unparam unused parameter in cmd/bd/doctor.go:541","description":"Linting issue: checkHooksQuick - path is unused (unparam) at cmd/bd/doctor.go:541:22. Error: func checkHooksQuick(path string) string {","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:17.02177046-07:00","updated_at":"2025-12-17T23:13:40.535743-08:00","closed_at":"2025-12-17T16:46:11.028332-08:00"} +{"id":"bd-d4jl","title":"Commit and push release","description":"git add -A \u0026\u0026 git commit -m 'chore: bump version to 0.32.1' \u0026\u0026 git push","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:21.928138-08:00","updated_at":"2025-12-20T21:57:12.81943-08:00","closed_at":"2025-12-20T21:57:12.81943-08:00","dependencies":[{"issue_id":"bd-d4jl","depends_on_id":"bd-tj00","type":"blocks","created_at":"2025-12-20T21:53:29.884457-08:00","created_by":"daemon"},{"issue_id":"bd-d4jl","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:21.930015-08:00","created_by":"daemon"}]} +{"id":"bd-1slh","title":"Investigate charmbracelet-based TUI for beads","description":"Now that we've merged the create-form command (PR #603) which uses charmbracelet/huh, investigate whether beads should have a more comprehensive TUI.\n\nConsiderations:\n- Should this be in core or a separate binary (bd-tui)?\n- What functionality would benefit from a TUI? (list view, issue details, search, bulk operations)\n- Plugin/extension architecture vs build tags vs separate binary\n- Dependency cost vs user experience tradeoff\n- Target audience: humans who want interactive workflows vs CLI/scripting users\n\nRelated: PR #603 added charmbracelet/huh dependency for create-form command.","status":"open","priority":3,"issue_type":"feature","created_at":"2025-12-17T14:20:51.503563-08:00","updated_at":"2025-12-17T14:20:51.503563-08:00"} +{"id":"bd-9g1z","title":"Fix or remove TestFindJSONLPathDefault (issue #356)","description":"Code health review found .test-skip permanently skips TestFindJSONLPathDefault.\n\nThe test references issue #356 about wrong JSONL filename expectations (issues.jsonl vs beads.jsonl).\n\nTest file: internal/beads/beads_test.go\n\nThe underlying migration from beads.jsonl to issues.jsonl may be complete, so either:\n1. Fix the test expectations\n2. Remove the test if no longer needed\n3. Document why it remains skipped","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-16T18:17:31.33975-08:00","updated_at":"2025-12-16T18:17:31.33975-08:00","dependencies":[{"issue_id":"bd-9g1z","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.169617-08:00","created_by":"daemon"}]} +{"id":"bd-dsdh","title":"Document sync.branch 'always dirty' working tree behavior","description":"## Context\n\nWhen sync.branch is configured, the .beads/issues.jsonl file in main's working tree is ALWAYS dirty. This is by design:\n\n1. bd sync commits to beads-sync branch (via worktree)\n2. bd sync copies JSONL to main's working tree (so CLI commands work)\n3. This copy is NOT committed to main (to reduce commit noise)\n\nContributors who watch main branch history pushed for sync.branch to avoid constant beads commit noise. But users need to understand the trade-off.\n\n## Documentation Needed\n\nUpdate README.md sync.branch section with:\n\n1. **Clear explanation** of why .beads/ is always dirty on main\n2. **\"Be Zen about it\"** - this is expected, not a bug\n3. **Workflow options:**\n - Accept dirty state, use `bd sync --merge` periodically to snapshot to main\n - Or disable sync.branch if clean working tree is more important\n4. **Shell alias tip** to hide beads from git status:\n ```bash\n alias gs='git status -- \":!.beads/\"'\n ```\n5. **When to merge**: releases, milestones, or periodic snapshots\n\n## Related\n\n- bd-7b7h: Fix that allows bd sync --merge to work with dirty .beads/\n- bd-elqd: Investigation that identified this as expected behavior","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T23:16:12.253559-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-qqc.12","title":"Restart daemon with {{version}}","description":"Restart the bd daemon to pick up new version:\n\n```bash\nbd daemon --stop\nbd daemon --start\nbd daemon --health # Verify Version: {{version}}\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:08:04.155448-08:00","updated_at":"2025-12-18T23:09:05.777375-08:00","closed_at":"2025-12-18T23:09:05.777375-08:00","dependencies":[{"issue_id":"bd-qqc.12","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T23:08:04.155832-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.12","depends_on_id":"bd-qqc.11","type":"blocks","created_at":"2025-12-18T23:08:19.779897-08:00","created_by":"daemon"}]} +{"id":"bd-tj00","title":"Update local installation","description":"go build -o ~/.local/bin/bd ./cmd/bd \u0026\u0026 codesign -s - ~/.local/bin/bd","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:20.616907-08:00","updated_at":"2025-12-20T21:55:42.756171-08:00","closed_at":"2025-12-20T21:55:42.756171-08:00","dependencies":[{"issue_id":"bd-tj00","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:20.619834-08:00","created_by":"daemon"},{"issue_id":"bd-tj00","depends_on_id":"bd-9l0h","type":"blocks","created_at":"2025-12-20T21:53:29.817989-08:00","created_by":"daemon"}]} +{"id":"bd-au0.8","title":"Improve clean vs cleanup command naming/documentation","description":"Clarify the difference between bd clean and bd cleanup to reduce user confusion.\n\n**Current state:**\n- bd clean: Remove temporary artifacts (.beads/bd.sock, logs, etc.)\n- bd cleanup: Delete old closed issues from database\n\n**Options:**\n1. Rename for clarity:\n - bd clean ā†’ bd clean-temp\n - bd cleanup ā†’ bd cleanup-issues\n \n2. Keep names but improve help text and documentation\n\n3. Add prominent warnings in help output\n\n**Preferred approach:** Option 2 (improve documentation)\n- Update short/long descriptions in commands\n- Add examples to help text\n- Update README.md\n- Add cross-references in help output\n\n**Files to modify:**\n- cmd/bd/clean.go\n- cmd/bd/cleanup.go\n- README.md or ADVANCED.md","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-21T21:07:49.960534-05:00","updated_at":"2025-11-21T21:07:49.960534-05:00","dependencies":[{"issue_id":"bd-au0.8","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:49.962743-05:00","created_by":"daemon"}]} +{"id":"bd-aydr.8","title":"Respond to GitHub issue #479 with solution","description":"Once bd reset is implemented and released, respond to GitHub issue #479.\n\n## Response should include\n- Announce the new bd reset command\n- Show basic usage examples\n- Link to any documentation\n- Thank the user for the feedback\n\n## Example response\n```\nThanks for raising this! We've added a `bd reset` command to handle this case.\n\nUsage:\n- `bd reset` - Reset to clean state (prompts for confirmation)\n- `bd reset --backup` - Create backup first\n- `bd reset --hard` - Also clean up git history\n\nThis is available in version X.Y.Z.\n```\n\n## Notes\n- Wait until feature is merged and released\n- Consider if issue should be closed or left for user confirmation","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-13T08:45:00.112351+11:00","updated_at":"2025-12-13T06:24:29.562177-08:00","closed_at":"2025-12-13T10:18:06.646796+11:00","dependencies":[{"issue_id":"bd-aydr.8","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:45:00.112732+11:00","created_by":"daemon"},{"issue_id":"bd-aydr.8","depends_on_id":"bd-aydr.7","type":"blocks","created_at":"2025-12-13T08:45:12.640243+11:00","created_by":"daemon"}]} +{"id":"bd-kwro.10","title":"Tests for messaging and graph links","description":"Comprehensive test coverage for all new features.\n\nTest files:\n- cmd/bd/mail_test.go - mail command tests\n- internal/storage/sqlite/graph_links_test.go - graph link tests\n- internal/hooks/hooks_test.go - hook execution tests\n\nTest cases:\n- Mail send/inbox/read/ack lifecycle\n- Thread creation and traversal (replies_to)\n- Bidirectional relates_to\n- Duplicate marking and queries\n- Supersedes chains\n- Ephemeral cleanup\n- Identity resolution priority\n- Hook execution (mock hooks)\n- Schema migration preserves data\n\nTarget: \u003e80% coverage on new code","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T03:02:34.050136-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-hy9p","title":"Add --body-file flag to bd create for reading descriptions from files","description":"## Problem\n\nCreating issues with long/complex descriptions via CLI requires shell escaping gymnastics:\n\n```bash\n# Current workaround - awkward heredoc quoting\nbd create --title=\"...\" --description=\"$(cat \u003c\u003c'EOF'\n...markdown...\nEOF\n)\"\n\n# Often fails with quote escaping errors in eval context\n# Agents resort to writing temp files then reading them\n```\n\n## Proposed Solution\n\nAdd `--body-file` and `--description-file` flags to read description from a file, matching `gh` CLI pattern.\n\n```bash\n# Natural pattern that aligns with training data\ncat \u003e /tmp/desc.md \u003c\u003c 'EOF'\n...markdown content...\nEOF\n\nbd create --title=\"...\" --body-file=/tmp/desc.md\n```\n\n## Implementation\n\n### 1. Add new flags to `bd create`\n\n```go\ncreateCmd.Flags().String(\"body-file\", \"\", \"Read description from file (use - for stdin)\")\ncreateCmd.Flags().String(\"description-file\", \"\", \"Alias for --body-file\")\n```\n\n### 2. Flag precedence\n\n- If `--body-file` or `--description-file` is provided, read from file\n- If value is `-`, read from stdin\n- Otherwise fall back to `--body` or `--description` flag\n- If neither provided, description is empty (current behavior)\n\n### 3. Error handling\n\n- File doesn't exist ā†’ clear error message\n- File not readable ā†’ clear error message\n- stdin specified but not available ā†’ clear error message\n\n## Benefits\n\nāœ… **Matches training data**: `gh issue create --body-file file.txt` is a common pattern\nāœ… **No shell escaping issues**: File content is read directly\nāœ… **Works with any content**: Markdown, special characters, quotes, etc.\nāœ… **Agent-friendly**: Agents already write complex content to temp files\nāœ… **User-friendly**: Easier for humans too when pasting long descriptions\n\n## Related Commands\n\nConsider adding similar support to:\n- `bd update --body-file` (for updating descriptions)\n- `bd comment --body-file` (if/when we add comments)\n\n## Examples\n\n```bash\n# From file\nbd create --title=\"Add new feature\" --body-file=feature.md\n\n# From stdin\necho \"Quick description\" | bd create --title=\"Bug fix\" --body-file=-\n\n# With other flags\nbd create \\\n --title=\"Security issue\" \\\n --type=bug \\\n --priority=0 \\\n --body-file=security-report.md \\\n --label=security\n```\n\n## Testing\n\n- Test with normal files\n- Test with stdin (`-`)\n- Test with non-existent files (error handling)\n- Test with binary files (should handle gracefully)\n- Test with empty files (valid - empty description)\n- Test that `--description-file` and `--body-file` are equivalent aliases","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-11-22T00:02:08.762684-08:00","updated_at":"2025-12-17T23:13:40.536024-08:00","closed_at":"2025-12-17T17:28:52.505239-08:00"} +{"id":"bd-6sm6","title":"Improve test coverage for internal/export (37.1% ā†’ 60%)","description":"The export package has only 37.1% test coverage. Export functionality needs good coverage to ensure data integrity.\n\nCurrent coverage: 37.1%\nTarget coverage: 60%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:06.802277-08:00","updated_at":"2025-12-13T21:01:19.08088-08:00"} +{"id":"bd-n4td","title":"Add warning when staleness check errors","description":"## Problem\n\nWhen ensureDatabaseFresh() calls CheckStaleness() and it errors (corrupted metadata, permission issues, etc.), we silently proceed with potentially stale data.\n\n**Location:** cmd/bd/staleness.go:27-32\n\n**Scenarios:**\n- Corrupted metadata table\n- Database locked by another process \n- Permission issues reading JSONL file\n- Invalid last_import_time format in DB\n\n## Current Code\n\n```go\nisStale, err := autoimport.CheckStaleness(ctx, store, dbPath)\nif err \\!= nil {\n // If we can't determine staleness, allow operation to proceed\n // (better to show potentially stale data than block user)\n return nil\n}\n```\n\n## Fix\n\n```go\nisStale, err := autoimport.CheckStaleness(ctx, store, dbPath)\nif err \\!= nil {\n fmt.Fprintf(os.Stderr, \"Warning: Could not verify database freshness: %v\\n\", err)\n fmt.Fprintf(os.Stderr, \"Proceeding anyway. Data may be stale.\\n\\n\")\n return nil\n}\n```\n\n## Impact\nMedium - users should know when staleness check fails\n\n## Effort\nEasy - 5 minutes","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-11-20T20:16:34.889997-05:00","updated_at":"2025-12-17T23:13:40.531031-08:00","closed_at":"2025-12-17T19:11:12.950618-08:00","dependencies":[{"issue_id":"bd-n4td","depends_on_id":"bd-2q6d","type":"blocks","created_at":"2025-11-20T20:18:20.154723-05:00","created_by":"stevey"}]} +{"id":"bd-379","title":"Implement `bd setup cursor` for Cursor IDE integration","description":"Create a `bd setup cursor` command that integrates Beads workflow into Cursor IDE via .cursorrules file. Unlike Claude Code (which has hooks), Cursor uses a static rules file to provide context to its AI.","status":"open","priority":3,"issue_type":"feature","created_at":"2025-11-11T23:32:22.170083-08:00","updated_at":"2025-11-11T23:32:22.170083-08:00"} +{"id":"bd-eyto","title":"Time-dependent tests may be flaky near TTL boundary","description":"Several tombstone merge tests use time.Now() to create test data: time.Now().Add(-24 * time.Hour), time.Now().Add(-60 * 24 * time.Hour), etc. While these work reliably in practice (24h vs 30d TTL has large margin), they could theoretically be flaky if: 1) Tests run slowly, 2) System clock changes during test, 3) TTL constants change. Recommendation: Consider using a fixed reference time or time injection for deterministic tests. Lower priority since current margin is large. Files: internal/merge/merge_test.go:1337-1338, 1352-1353, 1548-1549, 1590-1591","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-05T16:37:02.348143-08:00","updated_at":"2025-12-05T16:37:02.348143-08:00"} +{"id":"bd-kwro.9","title":"Cleanup: --ephemeral flag","description":"Update bd cleanup to handle ephemeral issues.\n\nNew flag:\n- bd cleanup --ephemeral - deletes all CLOSED issues with ephemeral=true\n\nBehavior:\n- Only deletes if status=closed AND ephemeral=true\n- Respects --dry-run flag\n- Reports count of deleted ephemeral issues\n\nThis allows swarm cleanup to remove transient messages without affecting permanent issues.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T03:02:28.563871-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-cbed9619.1","title":"Fix multi-round convergence for N-way collisions","description":"**Summary:** Multi-round collision resolution was identified as a critical issue preventing complete synchronization across distributed clones. The problem stemmed from incomplete final pulls that didn't fully propagate all changes between system instances.\n\n**Key Decisions:**\n- Implement multi-round sync mechanism\n- Ensure bounded convergence (ā‰¤N rounds)\n- Guarantee idempotent import without data loss\n\n**Resolution:** Developed a sync strategy that ensures all clones converge to the same complete set of issues, unblocking the bd-cbed9619 epic and improving distributed system reliability.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T21:22:21.486109-07:00","updated_at":"2025-12-17T23:18:29.111713-08:00","deleted_at":"2025-12-17T23:18:29.111713-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-ao0s","title":"bd graph crashes with --no-daemon on closed issues","description":"The `bd graph` command panics with nil pointer dereference when using `--no-daemon` flag on an issue with closed children.\n\n**Reproduction:**\n```bash\nbd graph bd-qqc --no-daemon\n# panic: runtime error: invalid memory address or nil pointer dereference\n# in main.computeDependencyCounts\n```\n\n**Stack trace:**\n```\npanic: runtime error: invalid memory address or nil pointer dereference\n[signal SIGSEGV: segmentation violation code=0x2 addr=0x20 pc=0x1010bdfb0]\n\ngoroutine 1 [running]:\nmain.computeDependencyCounts(...)\n /Users/stevey/gt/beads/crew/emma/cmd/bd/graph.go:428\nmain.renderGraph(0x1400033bb80, 0x0)\n /Users/stevey/gt/beads/crew/emma/cmd/bd/graph.go:307 +0x300\n```\n\n**Location:** cmd/bd/graph.go:428 - computeDependencyCounts() not handling nil case","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-18T22:57:36.972585-08:00","updated_at":"2025-12-20T18:12:46.798548-08:00","closed_at":"2025-12-20T18:12:46.798548-08:00"} +{"id":"bd-95k8","title":"Pinned field available in beads v0.37.0","description":"Hey max,\n\nHeads up on your mail overhaul work:\n\n1. **Pinned field is available** - beads v0.37.0 (released by dave earlier) includes the pinned field on issues. You'll want to add this to BeadsMessage in types.go.\n\n2. **Database migration** - Check if existing .beads databases need migration to support the pinned field. Run `bd doctor` to see if it flags anything.\n\n3. **Sorting task** - Once you have the pinned field, gt-ngu1 (pinned beads first in mail inbox) needs implementing. Since messages now come from `bd list --type=message`, you'll need to either:\n - Sort in listBeads() after fetching, or\n - Ensure bd list returns pinned items first (may already do this?)\n\nCheck what version of bd you're building against.\n\n-- Mayor","status":"open","priority":2,"issue_type":"message","created_at":"2025-12-20T17:51:57.315956-08:00","updated_at":"2025-12-20T17:51:57.315956-08:00"} +{"id":"bd-qqc.9","title":"Update Homebrew formula","description":"Update the Homebrew tap with new version:\n\n```bash\n./scripts/update-homebrew.sh {{version}}\n```\n\nThis script waits for GitHub Actions to complete (~5 min), then updates the formula with new SHA256 hashes.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:35.815096-08:00","updated_at":"2025-12-18T22:51:07.863862-08:00","closed_at":"2025-12-18T22:51:07.863862-08:00","dependencies":[{"issue_id":"bd-qqc.9","depends_on_id":"bd-qqc.8","type":"blocks","created_at":"2025-12-18T22:43:21.332955-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.9","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:35.816752-08:00","created_by":"daemon"}]} +{"id":"bd-hlsw.4","title":"Sync branch integrity guards","description":"Track sync branch parent commit. If sync branch was force-pushed, warn user and require confirmation before proceeding. Add option to reset to remote if user accepts rebase. Prevents silent corruption from forced pushes.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-14T10:40:20.645402352-07:00","updated_at":"2025-12-14T10:40:20.645402352-07:00","dependencies":[{"issue_id":"bd-hlsw.4","depends_on_id":"bd-hlsw","type":"parent-child","created_at":"2025-12-14T10:40:20.646425761-07:00","created_by":"daemon"}]} +{"id":"bd-lw0x","title":"Fix bd sync race condition with daemon causing dirty working directory","description":"After bd sync completes with sync.branch mode, subsequent bd commands or daemon file watcher would see a hash mismatch and trigger auto-import, which then schedules re-export, dirtying the working directory.\n\n**Root cause:**\n1. bd sync exports JSONL with NEW content (hash H1)\n2. bd sync updates jsonl_content_hash = H1 in DB\n3. bd sync restores JSONL from HEAD (OLD content, hash H0)\n4. Now: file hash = H0, DB hash = H1 (MISMATCH)\n5. Daemon or next CLI command sees mismatch, imports from OLD JSONL\n6. Import triggers re-export ā†’ file is dirty\n\n**Fix:**\nAfter restoreBeadsDirFromBranch(), update jsonl_content_hash to match the restored file's hash. This ensures daemon and CLI see file hash = DB hash ā†’ no spurious import/export cycle.\n\nRelated: bd-c83r (multiple daemon prevention)","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-13T06:42:17.130839-08:00","updated_at":"2025-12-13T06:43:33.329042-08:00","closed_at":"2025-12-13T06:43:33.329042-08:00"} +{"id":"bd-d148","title":"GH#483: Pre-commit hook fails unnecessarily when .beads removed","description":"Pre-commit hook fails on bd sync when .beads directory exists but user is on branch without beads. Should exit gracefully. See GitHub issue #483.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:40.049785-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-cb64c226.13","title":"Audit Current Cache Usage","description":"**Summary:** Comprehensive audit of storage cache usage revealed minimal dependency across server components, with most calls following a consistent pattern. Investigation confirmed cache was largely unnecessary in single-repository daemon architecture.\n\n**Key Decisions:** \n- Remove all cache-related environment variables\n- Delete server struct cache management fields\n- Eliminate cache-specific test files\n- Deprecate req.Cwd routing logic\n\n**Resolution:** Cache system will be completely removed, simplifying server storage access and reducing unnecessary complexity with negligible performance impact.","notes":"AUDIT COMPLETE\n\ngetStorageForRequest() callers: 17 production + 11 test\n- server_issues_epics.go: 8 calls\n- server_labels_deps_comments.go: 4 calls \n- server_export_import_auto.go: 2 calls\n- server_compact.go: 2 calls\n- server_routing_validation_diagnostics.go: 1 call\n- server_eviction_test.go: 11 calls (DELETE entire file)\n\nPattern everywhere: store, err := s.getStorageForRequest(req) ā†’ store := s.storage\n\nreq.Cwd usage: Only for multi-repo routing. Local daemon always serves 1 repo, so routing is unused.\n\nMCP server: Uses separate daemons per repo (no req.Cwd usage found). NOT affected by cache removal.\n\nCache env vars to deprecate:\n- BEADS_DAEMON_MAX_CACHE_SIZE (used in server_core.go:63)\n- BEADS_DAEMON_CACHE_TTL (used in server_core.go:72)\n- BEADS_DAEMON_MEMORY_THRESHOLD_MB (used in server_cache_storage.go:47)\n\nServer struct fields to remove:\n- storageCache, cacheMu, maxCacheSize, cacheTTL, cleanupTicker, cacheHits, cacheMisses\n\nTests to delete:\n- server_eviction_test.go (entire file - 9 tests)\n- limits_test.go cache assertions\n\nSpecial consideration: ValidateDatabase endpoint uses findDatabaseForCwd() outside cache. Verify if used, then remove or inline.\n\nSafe to proceed with removal - cache always had 1 entry in local daemon model.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:19.3723-07:00","updated_at":"2025-12-17T23:18:29.111369-08:00","deleted_at":"2025-12-17T23:18:29.111369-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-2ep8","title":"Update CHANGELOG.md with release notes","description":"Add meaningful release notes to CHANGELOG.md describing what changed in 0.30.7","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649053-08:00","updated_at":"2025-12-19T22:57:31.69559-08:00","closed_at":"2025-12-19T22:57:31.69559-08:00","dependencies":[{"issue_id":"bd-2ep8","depends_on_id":"bd-rupw","type":"blocks","created_at":"2025-12-19T22:56:48.651136-08:00","created_by":"stevey"},{"issue_id":"bd-2ep8","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.650816-08:00","created_by":"stevey"}]} +{"id":"bd-x3hi","title":"Support redirect files in .beads/ directory","description":"Gas Town creates polecat worktrees with .beads/redirect files that point to a shared beads database. The bd CLI should:\n\n1. When finding a .beads/ directory, check if it contains a 'redirect' file\n2. If redirect exists, read the relative path and use that as the beads directory\n3. This allows multiple git worktrees to share a single beads database\n\nExample:\n- polecats/alpha/.beads/redirect contains '../../mayor/rig/.beads'\n- bd commands from alpha should use mayor/rig/.beads\n\nCurrently bd ignores redirect files and either uses the local .beads/ or walks up to find a parent .beads/.\n\nRelated: gt-nriy (test message that can't be retrieved due to missing redirect support)","status":"open","priority":1,"issue_type":"feature","created_at":"2025-12-20T21:46:23.415172-08:00","updated_at":"2025-12-20T21:46:23.415172-08:00"} +{"id":"bd-iq7n","title":"Audit and fix JSONL filename mismatches across all repo clones","description":"## Problem\n\nMultiple clones of repos are configured with different JSONL filenames (issues.jsonl vs beads.jsonl), causing:\n1. JSONL files to be resurrected after deletion (one clone pushes issues.jsonl, another pushes beads.jsonl)\n2. Agents unable to see issues filed by other agents after sync\n3. Merge conflicts and data inconsistencies\n\n## Root Cause\n\nWhen repos were \"bd doctored\" or initialized at different times, some got issues.jsonl (old default) and others got beads.jsonl (Beads repo specific). These clones push their respective files, creating duplicates.\n\n## Task\n\nScan all repo clones under ~/src/ (1-2 levels deep) and standardize their JSONL configuration.\n\n### Step 1: Find all beads-enabled repos\n\n```bash\n# Find all directories named 'beads' at levels 1-2 under ~/src/\nfind ~/src -maxdepth 2 -type d -name beads\n```\n\n### Step 2: For each repo found, check configuration\n\nFor each directory from Step 1, check:\n- Does `.beads/metadata.json` exist?\n- What is the `jsonl_export` value?\n- What JSONL files actually exist in `.beads/`?\n- Are there multiple JSONL files (problem!)?\n\n### Step 3: Create audit report\n\nGenerate a report showing:\n```\nRepo Path | Config | Actual Files | Status\n----------------------------------- | ------------- | ---------------------- | --------\n~/src/beads | beads.jsonl | beads.jsonl | OK\n~/src/dave/beads | issues.jsonl | issues.jsonl | MISMATCH\n~/src/emma/beads | issues.jsonl | issues.jsonl, beads.jsonl | DUPLICATE!\n```\n\n### Step 4: Determine canonical name for each repo\n\nFor repos that are the SAME git repository (check `git remote -v`):\n- Group them together\n- Determine which JSONL filename should be canonical (majority wins, or beads.jsonl for the beads repo itself)\n- List which clones need to be updated\n\n### Step 5: Generate fix script\n\nCreate a script that for each mismatched clone:\n1. Updates `.beads/metadata.json` to use the canonical name\n2. If JSONL file needs renaming: `git mv .beads/old.jsonl .beads/new.jsonl`\n3. Removes any duplicate JSONL files: `git rm .beads/duplicate.jsonl`\n4. Commits the change\n5. Syncs: `bd sync`\n\n### Expected Output\n\n1. Audit report showing all repos and their config status\n2. List of repos grouped by git remote (same repository)\n3. Fix script or manual instructions for standardizing each repo\n4. Verification that after fixes, all clones of the same repo use the same JSONL filename\n\n### Edge Cases\n\n- Handle repos without metadata.json (use default discovery)\n- Handle repos with no git remote (standalone/local)\n- Handle repos that are not git repositories\n- Don't modify repos with uncommitted changes (warn instead)\n\n### Success Criteria\n\n- All clones of the same git repository use the same JSONL filename\n- No duplicate JSONL files in any repo\n- All configurations documented in metadata.json\n- bd doctor passes on all repos","status":"closed","issue_type":"task","created_at":"2025-11-21T23:58:35.044762-08:00","updated_at":"2025-12-17T23:13:40.531403-08:00","closed_at":"2025-12-17T16:50:59.510972-08:00"} +{"id":"bd-bwk2","title":"Centralize error handling patterns in storage layer","description":"80+ instances of inconsistent error handling across sqlite.go with mix of %w, %v, and no wrapping.\n\nLocation: internal/storage/sqlite/sqlite.go (throughout)\n\nProblem:\n- Some use fmt.Errorf(\"op failed: %w\", err) - correct wrapping\n- Some use fmt.Errorf(\"op failed: %v\", err) - loses error chain\n- Some return err directly - no context\n- Hard to debug production issues\n- Can't distinguish error types\n\nSolution: Create internal/storage/sqlite/errors.go:\n- Define sentinel errors (ErrNotFound, ErrInvalidID, etc.)\n- Create wrapDBError(op string, err error) helper\n- Convert sql.ErrNoRows to ErrNotFound\n- Always wrap with operation context\n\nImpact: Lost error context; inconsistent messages; hard to debug\n\nEffort: 5-7 hours","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-16T14:51:54.974909-08:00","updated_at":"2025-11-16T14:51:54.974909-08:00"} +{"id":"bd-581b80b3","title":"bd find-duplicates - AI-powered duplicate detection","description":"Find semantically duplicate issues.\n\nApproaches:\n1. Mechanical: Exact title/description matching\n2. Embeddings: Cosine similarity (cheap, scalable)\n3. AI: LLM-based semantic comparison (expensive, accurate)\n\nUses embeddings by default for \u003e100 issues.\n\nFiles: cmd/bd/find_duplicates.go (new)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-10-29T20:49:49.126801-07:00","updated_at":"2025-12-17T22:58:34.563511-08:00","closed_at":"2025-12-17T22:58:34.563511-08:00"} +{"id":"bd-x36g","title":"Thread Test 2","description":"Testing direct mode","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:16.470631-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} +{"id":"bd-fu83","title":"Fix daemon/direct mode inconsistency in relate and duplicate commands","description":"The relate.go and duplicate.go commands have inconsistent daemon/direct mode handling:\n\nWhen daemonClient is connected, they resolve IDs via RPC but then perform updates directly via store.UpdateIssue(), bypassing the daemon.\n\nAffected locations:\n- relate.go:125-139 (runRelate update)\n- relate.go:235-246 (runUnrelate update) \n- duplicate.go:120 (runDuplicate update)\n- duplicate.go:207 (runSupersede update)\n\nShould either use RPC for updates when daemon is running, or document why direct access is intentional.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-16T20:52:54.164189-08:00","updated_at":"2025-12-16T20:52:54.164189-08:00"} +{"id":"bd-hnkg","title":"GH#540: Add silent quick-capture mode (bd q)","description":"Add bd q alias for quick capture that outputs only issue ID. Useful for piping/scripting. See GitHub issue #540.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:03:38.260135-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} +{"id":"bd-mql4","title":"getLocalSyncBranch silently ignores YAML parse errors","description":"In autoimport.go:170-172, YAML parsing errors are silently ignored. If a user has malformed YAML in config.yaml, sync-branch will just silently be empty with no feedback.\n\nRecommendation: Add debug logging since this function is only called during auto-import, and debugging silent failures is painful.\n\nAdd: debug.Logf(\"Warning: failed to parse config.yaml: %v\", err)","status":"open","priority":4,"issue_type":"task","created_at":"2025-12-07T02:03:44.217728-08:00","updated_at":"2025-12-07T02:03:44.217728-08:00"} +{"id":"bd-7m16","title":"GH#519: bd sync fails when sync.branch is currently checked-out branch","description":"bd sync tries to create worktree for sync.branch even when already on that branch. Should commit directly instead. See GitHub issue #519.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:36.613211-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-05a8","title":"Split large cmd/bd files: doctor.go (2948 lines), sync.go (2121 lines)","description":"Code health review found several oversized files:\n\n1. doctor.go - 2948 lines, 48 functions mixed together\n - Should split into doctor/checks/*.go for individual diagnostics\n - applyFixes() and previewFixes() are nearly identical\n\n2. sync.go - 2121 lines\n - ZFC (Zero Flush Check) logic embedded inline (lines 213-247)\n - Multiple mode handlers should be extracted\n\n3. init.go - 1732 lines\n4. compact.go - 1097 lines\n5. show.go - 1069 lines\n\nRecommendation: Extract into focused sub-packages or split into logical files.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-16T18:17:18.169927-08:00","updated_at":"2025-12-16T18:17:18.169927-08:00","dependencies":[{"issue_id":"bd-05a8","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.846503-08:00","created_by":"daemon"}]} +{"id":"bd-hkr6","title":"GH#518: Document bd setup command","description":"bd setup is undiscoverable. Add to README/docs. Currently only findable by grepping source. See GitHub issue #518.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:54.664668-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-otf4","title":"Code Review: PR #481 - Context Engineering Optimizations","description":"Comprehensive code review of the merged context engineering PR (PR #481) that reduces MCP context usage by 80-90%.\n\n## Summary\nThe PR successfully implements lazy tool schema loading and minimal issue models to reduce context window usage. Overall implementation is solid and well-tested.\n\n## Positive Findings\nāœ… Well-designed models (IssueMinimal, CompactedResult)\nāœ… Comprehensive test coverage (28 tests, all passing)\nāœ… Clear documentation and comments\nāœ… Backward compatibility preserved (show() still returns full Issue)\nāœ… Sensible defaults (COMPACTION_THRESHOLD=20, PREVIEW_COUNT=5)\nāœ… Tool catalog complete with all 15 tools documented\n\n## Issues Identified\nSee linked issues for specific followup tasks.\n\n## Context Engineering Architecture\n- discover_tools(): List tool names only (~500 bytes vs ~15KB)\n- get_tool_info(name): Get specific tool details on-demand\n- IssueMinimal: Lightweight model for list views (~80 bytes vs ~400 bytes)\n- CompactedResult: Auto-compacts results with \u003e20 issues\n- _to_minimal(): Conversion function (efficient, no N+1 issues)","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:24:13.523532-08:00","updated_at":"2025-12-14T14:24:13.523532-08:00"} +{"id":"bd-rp4o","title":"Deleted issues resurrect during bd sync (tombstones not propagating)","description":"## Problem\n\nWhen issues are deleted with bd delete --force, they get deleted from the local DB but resurrect during the next bd sync.\n\n## Reproduction\n\n1. Observe orphan warnings (bd-cb64c226.*, bd-cbed9619.*)\n2. Delete them: bd delete bd-cb64c226.1 ... --force\n3. Run bd sync\n4. Orphan warnings reappear - issues were resurrected!\n\n## Root Cause Hypothesis\n\nThe sync branch workflow (beads-sync) has the old state before deletions. When bd sync pulls from beads-sync and copies JSONL to main, the deleted issues are re-imported.\n\nTombstones may not be properly:\n1. Written to beads-sync during export\n2. Propagated during pull/merge\n3. Honored during import\n\n## Related\n\n- bd-7b7h: chicken-and-egg sync.branch bug (same workflow)\n- bd-ncwo: ID-based fallback matching to prevent ghost resurrection\n\n## Files to Investigate\n\n- cmd/bd/sync.go (export/import flow)\n- internal/syncbranch/worktree.go (PullFromSyncBranch, copyJSONLToMainRepo)\n- internal/importer/ (tombstone handling)","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T23:09:43.072696-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-wc2","title":"Test body-file","description":"This is a test description from a file.\n\nIt has multiple lines.\n","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T17:27:20.508724-08:00","updated_at":"2025-12-17T17:28:33.83142-08:00","closed_at":"2025-12-17T17:28:33.83142-08:00"} +{"id":"bd-d73u","title":"Re: Thread Test 2","description":"Great! Thread is working well.","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:46.655093-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-d73u","depends_on_id":"bd-vpan","type":"replies-to","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} +{"id":"bd-au0.9","title":"Review and document rarely-used commands","description":"Document use cases or consider deprecation for infrequently-used commands.\n\n**Commands to review:**\n1. bd rename-prefix - How often is this used? Document use cases\n2. bd detect-pollution - Consider integrating into bd validate\n3. bd migrate-hash-ids - One-time migration, keep but document as legacy\n\n**For each command:**\n- Document typical use cases\n- Add examples to help text\n- Consider if it should be a subcommand instead\n- Add deprecation warning if appropriate\n\n**Not changing:**\n- duplicates āœ“ (useful for data quality)\n- repair-deps āœ“ (useful for fixing broken refs)\n- restore āœ“ (critical for compacted issues)\n- compact āœ“ (performance feature)\n\n**Deliverable:**\n- Updated help text\n- Documentation in ADVANCED.md\n- Deprecation plan if needed","status":"open","priority":3,"issue_type":"task","created_at":"2025-11-21T21:08:05.588275-05:00","updated_at":"2025-11-21T21:08:05.588275-05:00","dependencies":[{"issue_id":"bd-au0.9","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:08:05.59003-05:00","created_by":"daemon"}]} +{"id":"bd-6rl","title":"Merge3Way public API does not expose TTL parameter","description":"The public Merge3Way() function in merge.go does not allow callers to configure the tombstone TTL. It hard-codes the default via merge3WayWithTTL(). While merge3WayWithTTL() exists, it is unexported (lowercase). This means the CLI and tests cannot configure TTL at merge time. Use cases: testing with different TTL values, per-repository TTL configuration, debugging with short TTL, supporting --ttl flag in bd merge command (mentioned in design doc bd-zvg). Recommendation: Export Merge3WayWithTTL (rename to uppercase). Files: internal/merge/merge.go:77, 292-298","status":"open","priority":3,"issue_type":"feature","created_at":"2025-12-05T16:36:15.756814-08:00","updated_at":"2025-12-05T16:36:15.756814-08:00"} +{"id":"bd-47tn","title":"Add bd daemon --stop-all command to kill all daemon processes","description":"Currently there's no easy way to stop all running bd daemon processes. Users must resort to pkill -f 'bd daemon' or similar shell commands.\n\nAdd a --stop-all flag to bd daemon that:\n1. Finds all running bd daemon processes (not just the current repo's daemon)\n2. Gracefully stops them all\n3. Reports how many were stopped\n\nThis is useful when:\n- Multiple daemons are running and causing race conditions\n- User wants a clean slate before running bd sync\n- Debugging daemon-related issues","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-13T06:34:45.080633-08:00","updated_at":"2025-12-16T01:14:49.501989-08:00","closed_at":"2025-12-14T17:33:03.057089-08:00"} +{"id":"bd-2oo","title":"Edge Schema Consolidation: Unify all edges in dependencies table","description":"Consolidate all edge types into the dependency table per decision 004.\n\n## Changes\n- Add metadata column to dependencies table\n- Add thread_id column for conversation grouping\n- Remove redundant Issue fields: replies_to, relates_to, duplicate_of, superseded_by\n- Update all code to use dependencies API\n- Migration script for existing data\n- JSONL format change (breaking)\n\nReference: ~/gt/hop/decisions/004-edge-schema-consolidation.md","status":"closed","issue_type":"epic","created_at":"2025-12-18T02:01:48.785558-08:00","updated_at":"2025-12-18T02:49:10.61237-08:00","closed_at":"2025-12-18T02:49:10.61237-08:00"} +{"id":"bd-f5cc","title":"Thread Test","description":"Testing the thread feature","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:01.244501-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-f5cc","depends_on_id":"bd-x36g","type":"supersedes","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} +{"id":"bd-lsv4","title":"GH#444: Fix inconsistent status naming in_progress vs in-progress","description":"Documentation uses in-progress (hyphen) but code expects in_progress (underscore). Update all docs to use canonical in_progress. See GitHub issue #444.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:14.349425-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-8fgn","title":"test hash length","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T13:49:32.113843-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pbh.12","title":"Push commit and tag to origin","description":"```bash\ngit push origin main\ngit push origin v0.30.4\n```\n\nThis triggers GitHub Actions:\n- GoReleaser build\n- PyPI publish\n- npm publish\n\n\n```verify\ngit ls-remote origin refs/tags/v0.30.4 | grep -q 'v0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.066074-08:00","updated_at":"2025-12-17T21:46:46.301948-08:00","closed_at":"2025-12-17T21:46:46.301948-08:00","dependencies":[{"issue_id":"bd-pbh.12","depends_on_id":"bd-pbh.11","type":"blocks","created_at":"2025-12-17T21:19:11.265986-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.12","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.066442-08:00","created_by":"daemon"}]} +{"id":"bd-cb64c226.10","title":"Delete server_cache_storage.go","description":"Remove the entire cache implementation file (~286 lines)","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:38.729299-07:00","updated_at":"2025-12-17T23:18:29.110716-08:00","deleted_at":"2025-12-17T23:18:29.110716-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-cbed9619.2","title":"Implement content-first idempotent import","description":"**Summary:** Refactored issue import to be content-first and idempotent, ensuring consistent data synchronization across multiple import rounds by prioritizing content hash matching over ID-based updates.\n\n**Key Decisions:** \n- Implement content hash as primary matching mechanism\n- Create global collision resolution algorithm\n- Ensure importing same data multiple times results in no-op\n\n**Resolution:** The new import strategy guarantees predictable convergence across distributed systems, solving rename detection and collision handling while maintaining data integrity during multi-stage imports.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:38:25.671302-07:00","updated_at":"2025-12-17T23:18:29.112032-08:00","dependencies":[{"issue_id":"bd-cbed9619.2","depends_on_id":"bd-cbed9619.5","type":"blocks","created_at":"2025-10-28T18:39:28.360026-07:00","created_by":"daemon"},{"issue_id":"bd-cbed9619.2","depends_on_id":"bd-cbed9619.4","type":"blocks","created_at":"2025-10-28T18:39:28.383624-07:00","created_by":"daemon"},{"issue_id":"bd-cbed9619.2","depends_on_id":"bd-cbed9619.3","type":"blocks","created_at":"2025-10-28T18:39:28.407157-07:00","created_by":"daemon"}],"deleted_at":"2025-12-17T23:18:29.112032-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-20j","title":"sync branch not match config","description":"./bd sync\nā†’ Exporting pending changes to JSONL...\nā†’ No changes to commit\nā†’ Pulling from sync branch 'gh-386'...\nError pulling from sync branch: failed to create worktree: failed to create worktree parent directory: mkdir /var/home/matt/dev/beads/worktree-db-fail/.git: not a directory\nmatt@blufin-framation ~/d/b/worktree-db-fail (worktree-db-fail) [1]\u003e bd config list\n\nConfiguration:\n auto_compact_enabled = false\n compact_batch_size = 50\n compact_model = claude-3-5-haiku-20241022\n compact_parallel_workers = 5\n compact_tier1_days = 30\n compact_tier1_dep_levels = 2\n compact_tier2_commits = 100\n compact_tier2_days = 90\n compact_tier2_dep_levels = 5\n compaction_enabled = false\n issue_prefix = worktree-db-fail\n sync.branch = worktree-db-fail","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-08T06:49:04.449094018-07:00","updated_at":"2025-12-08T06:49:04.449094018-07:00"} +{"id":"bd-indn","title":"bd template commands fail with daemon mode","description":"The `bd template show` and `bd template instantiate` commands fail with 'Error loading template: no database connection' when daemon is running.\n\n**Reproduction:**\n```bash\nbd daemon --start\nbd template show bd-qqc # Error: no database connection\nbd template show bd-qqc --no-daemon # Works\n```\n\n**Expected:** Template commands should work with daemon like other commands.\n\n**Workaround:** Use `--no-daemon` flag.\n\n**Location:** Likely in cmd/bd/template.go - daemon RPC path not implemented for template operations.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-18T22:57:35.16596-08:00","updated_at":"2025-12-18T22:57:35.16596-08:00"} +{"id":"bd-nl2","title":"No logging/debugging for tombstone resurrection events","description":"Per the design document bd-zvg Open Question 1: Should resurrection log a warning? Recommendation was Yes. Currently, when an expired tombstone loses to a live issue (resurrection), there is no logging or debugging output. This makes it hard to understand why an issue reappeared. Recommendation: Add optional debug logging when resurrection occurs, e.g., Issue bd-abc resurrected (tombstone expired). Files: internal/merge/merge.go:359-366, 371-378, 400-405, 410-415","status":"open","priority":4,"issue_type":"feature","created_at":"2025-12-05T16:36:52.27525-08:00","updated_at":"2025-12-05T16:36:52.27525-08:00"} +{"id":"bd-cb64c226.6","title":"Verify MCP Server Compatibility","description":"Ensure MCP server works with cache-free daemon","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:56:03.241615-07:00","updated_at":"2025-12-17T23:18:29.109644-08:00","deleted_at":"2025-12-17T23:18:29.109644-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-umbf","title":"Design contributor namespace isolation for beads pollution prevention","description":"## Problem\n\nWhen contributors work on beads-the-project using beads-the-tool, their personal work-tracking issues leak into PRs. The .beads/issues.jsonl is intentionally tracked (it's the project's issue database), but contributors' local issues pollute the diff.\n\nThis is a recursion problem unique to self-hosting projects.\n\n## Possible Solutions to Explore\n\n1. **Contributor namespaces** - Each contributor gets a private prefix (e.g., `bd-steve-xxxx`) that's gitignored or filtered\n2. **Separate database** - Contributors use BEADS_DIR pointing elsewhere for personal tracking\n3. **Issue ownership/visibility flags** - Mark issues as \"local-only\" vs \"project\"\n4. **Prefix-based filtering** - Configure which prefixes are committed vs ignored\n\n## Design Considerations\n\n- Should be zero-friction for contributors (no manual setup)\n- Must not break existing workflows\n- Needs to work with sync/collaboration features\n- Consider: what if a \"personal\" issue graduates to \"project\" issue?\n\n## Expansion Needed\n\nThis is a placeholder. Needs detailed design exploration before implementation.","status":"open","priority":2,"issue_type":"feature","created_at":"2025-12-13T18:00:29.638743-08:00","updated_at":"2025-12-13T18:00:41.345673-08:00"} +{"id":"bd-0fvq","title":"bd doctor should recommend bd prime migration for existing repos","description":"bd doctor should detect old beads integration patterns and recommend migrating to bd prime approach.\n\n## Current behavior\n- bd doctor checks if Claude hooks are installed globally\n- Doesn't check project-level integration (AGENTS.md, CLAUDE.md)\n- Doesn't recommend migration for repos using old patterns\n\n## Desired behavior\nbd doctor should detect and suggest:\n\n1. **Old slash command pattern detected**\n - Check for /beads:* references in AGENTS.md, CLAUDE.md\n - Suggest: These slash commands are deprecated, use bd prime hooks instead\n \n2. **No agent documentation**\n - Check if AGENTS.md or CLAUDE.md exists\n - Suggest: Run 'bd onboard' or 'bd setup claude' to document workflow\n \n3. **Old MCP-only pattern**\n - Check for instructions to use MCP tools but no bd prime hooks\n - Suggest: Add bd prime hooks for better token efficiency\n\n4. **Migration path**\n - Show: 'Run bd setup claude to add SessionStart/PreCompact hooks'\n - Show: 'Update AGENTS.md to reference bd prime instead of slash commands'\n\n## Example output\n\nāš  Warning: Old beads integration detected in CLAUDE.md\n Found: /beads:* slash command references (deprecated)\n Recommend: Migrate to bd prime hooks for better token efficiency\n Fix: Run 'bd setup claude' and update CLAUDE.md\n\nšŸ’” Tip: bd prime + hooks reduces token usage by 80-99% vs slash commands\n MCP mode: ~50 tokens vs ~10.5k for full MCP scan\n CLI mode: ~1-2k tokens with automatic context recovery\n\n## Benefits\n- Helps existing repos adopt new best practices\n- Clear migration path for users\n- Better token efficiency messaging","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-12T03:20:25.567748-08:00","updated_at":"2025-11-12T03:20:25.567748-08:00"} +{"id":"bd-0vg","title":"Pinned issues: persistent context markers","description":"Add ability to pin issues so they remain visible and are excluded from work-finding commands. Pinned issues serve as persistent context markers (handoffs, architectural notes, recovery instructions) that should not be claimed as work items.\n\nUse Cases:\n1. Handoff messages - Pin session handoffs so new agents always see them\n2. Architecture decisions - Pin ADRs or design notes for reference \n3. Recovery context - Pin amnesia-cure notes that help agents orient\n\nCore commands: bd pin, bd unpin, bd list --pinned/--no-pinned","status":"open","priority":1,"issue_type":"epic","created_at":"2025-12-18T23:33:10.911092-08:00","updated_at":"2025-12-18T23:33:17.882415-08:00"} +{"id":"bd-cbed9619.5","title":"Add content-addressable identity to Issue type","description":"**Summary:** Added content-addressable identity to Issue type by implementing a ContentHash field that generates a unique SHA256 fingerprint based on semantic issue content. This resolves issue identification challenges when multiple system instances create issues with identical IDs but different contents.\n\n**Key Decisions:**\n- Use SHA256 for content hashing\n- Hash excludes ID and timestamps\n- Compute hash automatically at creation/import time\n- Add database column for hash storage\n\n**Resolution:** Successfully implemented a deterministic content hashing mechanism that enables reliable issue identification across distributed systems, improving data integrity and collision detection.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:36:44.914967-07:00","updated_at":"2025-12-17T23:18:29.112933-08:00","deleted_at":"2025-12-17T23:18:29.112933-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-by0d","title":"Work on beads-ldv: Fix bd graph crashes with nil pointer ...","description":"Work on beads-ldv: Fix bd graph crashes with nil pointer dereference (GH#657). Fix nil pointer in computeDependencyCounts at graph.go:428. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:27.829359-08:00","updated_at":"2025-12-20T00:26:12.607018-08:00","closed_at":"2025-12-19T23:20:49.038441-08:00"} +{"id":"bd-kwro.4","title":"Graph Link: duplicates for deduplication","description":"Implement duplicates link type for marking issues as duplicates.\n\nNew command:\n- bd duplicate \u003cid\u003e --of \u003ccanonical\u003e - marks id as duplicate of canonical\n- Auto-closes the duplicate issue\n\nQuery support:\n- bd show \u003cid\u003e shows 'Duplicate of: \u003ccanonical\u003e'\n- bd list --duplicates shows all duplicate pairs\n\nStorage:\n- duplicates column pointing to canonical issue ID\n\nEssential for large issue databases with many similar reports.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:36.257223-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-hw3w","title":"Update info.go versionChanges","description":"Add entry to versionChanges in cmd/bd/info.go with agent-actionable changes for {{version}}","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:01.016558-08:00","updated_at":"2025-12-20T17:59:26.262511-08:00","closed_at":"2025-12-20T01:23:50.3879-08:00","dependencies":[{"issue_id":"bd-hw3w","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:14.941855-08:00","created_by":"daemon"},{"issue_id":"bd-hw3w","depends_on_id":"bd-czss","type":"blocks","created_at":"2025-12-19T22:56:23.219257-08:00","created_by":"daemon"}]} +{"id":"bd-crgr","title":"GH#517: Claude sets priority wrong on new install","description":"Claude uses 'medium/high/low' for priority instead of P0-P4. Update bd prime/onboard output to be clearer about priority syntax. See GitHub issue #517.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:34.803084-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-pbh.6","title":"Update integrations/beads-mcp/pyproject.toml to 0.30.4","description":"Update version in pyproject.toml:\n```toml\nversion = \"0.30.4\"\n```\n\n\n```verify\ngrep -q 'version = \"0.30.4\"' integrations/beads-mcp/pyproject.toml\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.994004-08:00","updated_at":"2025-12-17T21:46:46.246574-08:00","closed_at":"2025-12-17T21:46:46.246574-08:00","dependencies":[{"issue_id":"bd-pbh.6","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.994376-08:00","created_by":"daemon"}]} +{"id":"bd-qqc","title":"Release v{{version}}","description":"Version bump workflow for beads release {{version}}.\n\n## Variables\n- `{{version}}` - The new version number (e.g., 0.31.0)\n- `{{date}}` - Release date (YYYY-MM-DD format)\n\n## Workflow Steps\n1. Kill running daemons\n2. Run tests and linting\n3. Bump version in all files (10 files total)\n4. Update cmd/bd/info.go with release notes\n5. Commit and push version bump\n6. Create and push git tag\n7. Update Homebrew formula\n8. Upgrade local Homebrew installation\n9. Verify installation\n\n## Files Updated by bump-version.sh\n- cmd/bd/version.go\n- .claude-plugin/plugin.json\n- .claude-plugin/marketplace.json\n- integrations/beads-mcp/pyproject.toml\n- integrations/beads-mcp/src/beads_mcp/__init__.py\n- README.md\n- npm-package/package.json\n- cmd/bd/templates/hooks/* (4 files)\n- CHANGELOG.md\n\n## Manual Step Required\n- cmd/bd/info.go - Add versionChanges entry with release notes","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-18T12:59:00.610371-08:00","updated_at":"2025-12-20T17:59:26.263219-08:00","closed_at":"2025-12-20T01:18:46.71424-08:00"} +{"id":"bd-w193","title":"Work on beads-399: Add omitempty to JSONL fields for smal...","description":"Work on beads-399: Add omitempty to JSONL fields for smaller notifications. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:37.440894-08:00","updated_at":"2025-12-20T00:26:12.607705-08:00","closed_at":"2025-12-19T23:23:09.542288-08:00"} +{"id":"bd-bgr","title":"Test stdin 2","description":"Description from stdin test\n","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T17:28:05.41434-08:00","updated_at":"2025-12-17T17:28:33.833288-08:00","closed_at":"2025-12-17T17:28:33.833288-08:00"} +{"id":"bd-r6a.2","title":"Implement subgraph cloning with variable substitution","description":"Core implementation of template instantiation:\n\n1. Add `bd template instantiate \u003ctemplate-id\u003e [--var key=value]...` command\n2. Implement subgraph loading:\n - Load template epic\n - Recursively load all children (and their children)\n - Load all dependencies between issues in the subgraph\n3. Implement variable substitution:\n - Scan titles and descriptions for `{{name}}` patterns\n - Replace with provided values\n - Error on missing required variables (or prompt interactively)\n4. Implement cloning:\n - Generate new IDs for all issues\n - Create cloned issues with substituted text\n - Remap and create dependencies\n5. Return the new epic ID\n\nConsider adding `--dry-run` flag to preview what would be created.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T22:43:25.179848-08:00","updated_at":"2025-12-17T23:02:29.034444-08:00","closed_at":"2025-12-17T23:02:29.034444-08:00","dependencies":[{"issue_id":"bd-r6a.2","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:25.180286-08:00","created_by":"daemon"},{"issue_id":"bd-r6a.2","depends_on_id":"bd-r6a.1","type":"blocks","created_at":"2025-12-17T22:44:03.15413-08:00","created_by":"daemon"}]} +{"id":"bd-9l0h","title":"Run tests and linting","description":"go test -short ./... \u0026\u0026 golangci-lint run ./...","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:19.527602-08:00","updated_at":"2025-12-20T21:55:29.660914-08:00","closed_at":"2025-12-20T21:55:29.660914-08:00","dependencies":[{"issue_id":"bd-9l0h","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:19.529203-08:00","created_by":"daemon"},{"issue_id":"bd-9l0h","depends_on_id":"bd-gocx","type":"blocks","created_at":"2025-12-20T21:53:29.753682-08:00","created_by":"daemon"}]} +{"id":"bd-gxq","title":"Simplify bd onboard to minimal AGENTS.md snippet pointing to bd prime","description":"## Context\nGH#604 raised concerns about bd onboard bloating AGENTS.md with ~100+ lines of static instructions that:\n- Load every session whether beads is being used or not\n- Get stale when bd upgrades\n- Waste tokens\n\n## Solution\nSimplify `bd onboard` to output a minimal snippet (~2 lines) that points to `bd prime`:\n\n```markdown\n## Issue Tracking\nThis project uses beads (`bd`) for issue tracking.\nRun `bd prime` for workflow context, or hooks auto-inject it.\n```\n\n## Rationale\n- `bd prime` is dynamic, concise (~80 lines), and always matches installed bd version\n- Hooks already auto-inject `bd prime` at session start when .beads/ detected\n- AGENTS.md only needs to mention beads exists, not contain full instructions\n\n## Implementation\n1. Update `cmd/bd/onboard.go` to output minimal snippet\n2. Keep `--output` flag for BD_GUIDE.md generation (may still be useful)\n3. Update help text to explain the new approach","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T11:42:38.604891-08:00","updated_at":"2025-12-18T11:47:28.020419-08:00","closed_at":"2025-12-18T11:47:28.020419-08:00"} +{"id":"bd-hzvz","title":"Update info.go versionChanges","description":"Add entry to versionChanges in cmd/bd/info.go with agent-actionable changes for 0.30.7","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649359-08:00","updated_at":"2025-12-19T22:57:31.604229-08:00","closed_at":"2025-12-19T22:57:31.604229-08:00","dependencies":[{"issue_id":"bd-hzvz","depends_on_id":"bd-2ep8","type":"blocks","created_at":"2025-12-19T22:56:48.652376-08:00","created_by":"stevey"},{"issue_id":"bd-hzvz","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.652068-08:00","created_by":"stevey"}]} +{"id":"bd-fx7v","title":"Improve test coverage for cmd/bd/doctor/fix (23.9% ā†’ 50%)","description":"The doctor/fix package has only 23.9% test coverage. The doctor fix functionality is important for troubleshooting.\n\nCurrent coverage: 23.9%\nTarget coverage: 50%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:05.67127-08:00","updated_at":"2025-12-13T21:01:20.839298-08:00"} +{"id":"bd-llfl","title":"Improve test coverage for cmd/bd CLI (26.2% ā†’ 50%)","description":"The main CLI package (cmd/bd) has only 26.2% test coverage. CLI commands should have at least 50% coverage to ensure reliability.\n\nKey areas with low/no coverage:\n- daemon_autostart.go (multiple 0% functions)\n- compact.go (several 0% functions)\n- Various command handlers\n\nCurrent coverage: 26.2%\nTarget coverage: 50%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:03.123341-08:00","updated_at":"2025-12-13T21:01:18.901944-08:00"} +{"id":"bd-9cdc","title":"Update docs for import bug fix","description":"Update AGENTS.md, README.md, TROUBLESHOOTING.md with import.orphan_handling config documentation. Document resurrection behavior, tombstones, config modes. Add troubleshooting section for import failures with deleted parents.","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-04T12:32:30.770415-08:00","updated_at":"2025-11-04T12:32:30.770415-08:00"} +{"id":"bd-pzw7","title":"gt handoff deadlock at handoff.go:125","notes":"When running 'gt handoff -m \"message\"' after successful MR submit, go panics with 'fatal error: all goroutines are asleep - deadlock\\!' at handoff.go:125. The shutdown request still appears to be sent successfully but the command crashes. Stack trace shows issue is in runHandoff select statement.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-19T23:22:12.46315-08:00","updated_at":"2025-12-19T23:22:18.613883-08:00"} +{"id":"bd-4ri","title":"Fix TestFallbackToDirectModeEnablesFlush deadlock causing 10min test timeout","description":"## Problem\n\nTestFallbackToDirectModeEnablesFlush in direct_mode_test.go deadlocks for 9m59s before timing out, causing the entire test suite to take 10+ minutes instead of \u003c10 seconds.\n\n## Root Cause\n\nDatabase lock contention between test cleanup and flushToJSONL():\n- Test cleanup (line 36) tries to close DB via defer\n- flushToJSONL() (line 132) is still accessing DB\n- Results in deadlock: database/sql.(*DB).Close() waits for mutex while GetJSONLFileHash() holds it\n\n## Stack Trace Evidence\n\n```\ngoroutine 512 [sync.Mutex.Lock, 9 minutes]:\ndatabase/sql.(*DB).Close(0x14000643790)\n .../database/sql/sql.go:927 +0x84\ngithub.com/steveyegge/beads/cmd/bd.TestFallbackToDirectModeEnablesFlush.func1()\n .../direct_mode_test.go:36 +0xf4\n\nWhile goroutine running flushToJSONL() holds DB connection via GetJSONLFileHash()\n```\n\n## Impact\n\n- Test suite: 10+ minutes ā†’ should be \u003c10 seconds\n- ALL other tests pass in ~4 seconds\n- This ONE test accounts for 99.9% of test runtime\n\n## Related\n\nThis is the EXACT same issue documented in MAIN_TEST_REFACTOR_NOTES.md for why main_test.go refactoring was deferred - global state manipulation + DB cleanup = deadlock.\n\n## Fix Approaches\n\n1. **Add proper cleanup sequencing** - stop flush goroutines BEFORE closing DB\n2. **Use test-specific DB lifecycle** - ensure flush completes before cleanup\n3. **Mock the flush mechanism** - avoid real DB for testing this code path \n4. **Add explicit timeout handling** - fail fast with clear error instead of hanging\n\n## Files\n\n- cmd/bd/direct_mode_test.go:36-132\n- cmd/bd/autoflush.go:353 (validateJSONLIntegrity)\n- cmd/bd/autoflush.go:508 (flushToJSONLWithState)\n\n## Acceptance\n\n- Test passes without timeout\n- Test suite completes in \u003c10 seconds\n- No deadlock between cleanup and flush operations","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-21T20:09:00.794372-05:00","updated_at":"2025-12-17T23:13:40.533279-08:00","closed_at":"2025-12-17T17:25:07.626617-08:00"} +{"id":"bd-haze","title":"Fix beads-9yc: pinned column missing from schema. gt mail...","description":"Fix beads-9yc: pinned column missing from schema. gt mail send fails because some beads DBs lack the pinned column. Add migration to ensure it exists.","status":"in_progress","priority":2,"issue_type":"task","created_at":"2025-12-19T15:05:33.394801-08:00","updated_at":"2025-12-19T15:05:33.524491-08:00"} +{"id":"bd-2oo.1","title":"Add metadata and thread_id columns to dependencies table","description":"Schema changes:\n- ALTER TABLE dependencies ADD COLUMN metadata TEXT DEFAULT '{}'\n- ALTER TABLE dependencies ADD COLUMN thread_id TEXT DEFAULT ''\n- CREATE INDEX idx_dependencies_thread ON dependencies(thread_id) WHERE thread_id != ''","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:00.468223-08:00","updated_at":"2025-12-18T02:49:10.575133-08:00","closed_at":"2025-12-18T02:49:10.575133-08:00","dependencies":[{"issue_id":"bd-2oo.1","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:00.470012-08:00","created_by":"daemon"}]} +{"id":"bd-eyrh","title":"šŸ¤ HANDOFF: Review remaining beads PRs","description":"## Current State\nJust merged PR #653 (doctor refactor) and added tests to restore coverage.\n\n## Remaining Open PRs to Review\nRun `gh pr list --repo steveyegge/beads` to see current list. As of handoff:\n\n1. #655 - feat: Linear Integration (jblwilliams)\n2. #651 - feat(audit): agent audit trail (dchichkov)\n3. #648 - Stop init creating redundant @AGENTS.md (maphew)\n4. #646 - fix(unix): handle Statfs field types (jordanhubbard)\n5. #645 - feat: /plan-to-beads Claude Code command (petebytes)\n6. #642, #641, #640 - sync branch fixes (cpdata)\n\n## Review Checklist\n- Check CI status with `gh pr checks \u003cnum\u003e --repo steveyegge/beads`\n- Verify no .beads/ data leaking (we have a hook now)\n- Review code quality\n- Merge good ones, request changes on problematic ones\n\n## Notes\n- User wants us to be proactive about merging good PRs\n- Can add tests ourselves if coverage drops","status":"closed","priority":2,"issue_type":"message","created_at":"2025-12-19T17:44:34.149837-08:00","updated_at":"2025-12-19T23:28:32.428731-08:00","closed_at":"2025-12-19T17:53:20.386937-08:00"} +{"id":"bd-qqc.3","title":"Update CHANGELOG.md for {{version}}","description":"In CHANGELOG.md:\n\n1. Change `## [Unreleased]` section header to `## [{{version}}] - {{date}}`\n2. Add new empty `## [Unreleased]` section above it\n3. Review and clean up the changes list\n\nFormat:\n```markdown\n## [Unreleased]\n\n## [{{version}}] - {{date}}\n\n### Added\n- ...\n\n### Changed\n- ...\n\n### Fixed\n- ...\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:39.738561-08:00","updated_at":"2025-12-18T23:34:18.629213-08:00","closed_at":"2025-12-18T22:41:41.846609-08:00","dependencies":[{"issue_id":"bd-qqc.3","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:39.739138-08:00","created_by":"stevey"}]} +{"id":"bd-qqc.4","title":"Run tests and verify build","description":"Run the test suite to verify nothing is broken:\n\n```bash\n./scripts/test.sh\n```\n\nOr manually:\n```bash\ngo build ./cmd/bd/...\ngo test ./...\n```\n\nFix any failures before proceeding.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:52.308314-08:00","updated_at":"2025-12-18T23:34:18.631671-08:00","closed_at":"2025-12-18T22:41:41.856318-08:00","dependencies":[{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc.3","type":"blocks","created_at":"2025-12-18T13:00:51.014568-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:52.308943-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc.1","type":"blocks","created_at":"2025-12-18T13:00:40.62142-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc.2","type":"blocks","created_at":"2025-12-18T13:00:45.820132-08:00","created_by":"stevey"}]} +{"id":"bd-7tuu","title":"Commit and push release","description":"git add -A \u0026\u0026 git commit \u0026\u0026 git push to trigger CI","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:02.053382-08:00","updated_at":"2025-12-20T01:23:52.484043-08:00","closed_at":"2025-12-20T01:23:52.484043-08:00","dependencies":[{"issue_id":"bd-7tuu","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.021087-08:00","created_by":"daemon"},{"issue_id":"bd-7tuu","depends_on_id":"bd-hw3w","type":"blocks","created_at":"2025-12-19T22:56:23.291591-08:00","created_by":"daemon"}]} +{"id":"bd-yck","title":"Fix checkExistingBeadsData to be worktree-aware","description":"The checkExistingBeadsData function in cmd/bd/init.go checks for .beads in the current working directory, but for worktrees it should check the main repository root instead. This prevents proper worktree compatibility.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-07T16:48:32.082776345-07:00","updated_at":"2025-12-07T16:48:32.082776345-07:00"} +{"id":"bd-c83r","title":"Prevent multiple daemons from running on the same repo","description":"Multiple bd daemons running on the same repo clone causes race conditions and data corruption risks.\n\n**Problem:**\n- Nothing prevents spawning multiple daemons for the same repository\n- Multiple daemons watching the same files can conflict during sync operations\n- Observed: 4 daemons running simultaneously caused sync race condition\n\n**Solution:**\nImplement daemon singleton enforcement per repo:\n1. Use a lock file (e.g., .beads/.daemon.lock) with PID\n2. On daemon start, check if lock exists and process is alive\n3. If stale lock (dead PID), clean up and acquire lock\n4. If active daemon exists, either:\n - Exit with message 'daemon already running (PID xxx)'\n - Or offer --replace flag to kill existing and take over\n5. Release lock on graceful shutdown\n\n**Edge cases to handle:**\n- Daemon crashes without releasing lock (stale PID detection)\n- Multiple repos in same directory tree (each repo gets own lock)\n- Race between two daemons starting simultaneously (atomic lock acquisition)","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-13T06:37:23.377131-08:00","updated_at":"2025-12-16T01:14:49.50347-08:00","closed_at":"2025-12-14T17:34:14.990077-08:00"} +{"id":"bd-pbh.19","title":"Install 0.30.4 MCP server locally","description":"Upgrade the MCP server (after PyPI publish):\n```bash\npip install --upgrade beads-mcp\n# OR if using uv:\nuv tool upgrade beads-mcp\n```\n\nVerify:\n```bash\npip show beads-mcp | grep Version\n```\n\n\n```verify\npip show beads-mcp 2\u003e/dev/null | grep -q 'Version: 0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.124496-08:00","updated_at":"2025-12-17T21:46:46.372989-08:00","closed_at":"2025-12-17T21:46:46.372989-08:00","dependencies":[{"issue_id":"bd-pbh.19","depends_on_id":"bd-pbh.14","type":"blocks","created_at":"2025-12-17T21:19:11.343558-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.19","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.124829-08:00","created_by":"daemon"}]} +{"id":"bd-p5za","title":"mol-christmas-launch: 3-day execution plan","description":"Christmas Launch Molecule - execute phases in order, survive restarts.\n\nPIN THIS BEAD. Check progress each session start.\n\n## Step: phase0-beads-foundation\nFix blocking issues before swarming:\n1. Verify gastown beads schema works: bd list --status=open\n2. Ensure bd mol bond exists (check bd-usro)\n3. Verify bd-2vh3 (squash) is filed\n\n## Step: phase1-polecat-loop\nSerial work on polecat execution:\n1. gt-9nf: Fresh polecats only\n2. gt-975: Molecule execution support\n3. gt-8v8: Refuse uncommitted work\nThen swarm: gt-e1y, gt-f8v, gt-eu9\nNeeds: phase0-beads-foundation\n\n## Step: phase2-refinery\nSerial work on refinery autonomy:\n1. gt-5gkd: Refinery CLAUDE.md\n2. gt-bj6f: Refinery context in gt prime\n3. gt-0qki: Refinery-Witness protocol\nNeeds: phase1-polecat-loop\n\n## Step: phase3-deacon\nHealth monitoring infrastructure:\n1. gt-5af.4: Simplify daemon\n2. gt-5af.7: Crew session patterns\n3. gt-976: Crew lifecycle\nNeeds: phase2-refinery\n\n## Step: phase4-code-review\nSelf-improvement flywheel:\n1. Define mol-code-review (gt-fjvo)\n2. Test on open MRs\n3. Integrate with Refinery\nNeeds: phase3-deacon\n\n## Step: phase5-polish\nDemo readiness:\n1. gt-b2hj: Find orphaned work\n2. Doctor checks\n3. Clean up open MRs\nNeeds: phase4-code-review\n\n## Step: verify-flywheel\nSuccess criteria:\n- gt spawn works with molecules\n- Refinery processes MRs autonomously\n- mol-code-review runs on a PR\n- bd cleanup --ephemeral works\nNeeds: phase5-polish","status":"open","issue_type":"epic","created_at":"2025-12-20T21:20:02.462889-08:00","updated_at":"2025-12-20T21:20:02.462889-08:00"} +{"id":"bd-8e0q","title":"Merge: beads-ocs","description":"branch: polecat/valkyrie\ntarget: main\nsource_issue: beads-ocs\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:24:45.281478-08:00","updated_at":"2025-12-19T23:24:45.281478-08:00"} +{"id":"bd-kwro.2","title":"Graph Link: replies_to for conversation threading","description":"Implement replies_to link type for message threading.\n\nNew command:\n- bd mail reply \u003cid\u003e -m 'Response' creates a message with replies_to set\n\nQuery support:\n- bd show \u003cid\u003e --thread shows full conversation thread\n- Thread traversal in storage layer\n\nStorage:\n- replies_to column in issues table\n- Index for efficient thread queries\n\nThis enables Reddit-style nested threads where messages reply to other messages.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:25.292728-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pbh.17","title":"Install 0.30.4 Go binary locally","description":"Rebuild and install the Go binary:\n```bash\ngo install ./cmd/bd\n# OR\nmake install\n```\n\nVerify:\n```bash\nbd --version\n```\n\n\n```verify\nbd --version 2\u003e\u00261 | grep -q '0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.108597-08:00","updated_at":"2025-12-17T21:46:46.352702-08:00","closed_at":"2025-12-17T21:46:46.352702-08:00","dependencies":[{"issue_id":"bd-pbh.17","depends_on_id":"bd-pbh.13","type":"blocks","created_at":"2025-12-17T21:19:11.322091-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.17","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.108917-08:00","created_by":"daemon"}]} +{"id":"bd-bgm","title":"Fix unparam unused parameter in cmd/bd/doctor.go:1879","description":"Linting issue: checkGitHooks - path is unused (unparam) at cmd/bd/doctor.go:1879:20. Error: func checkGitHooks(path string) doctorCheck {","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:25.270293252-07:00","updated_at":"2025-12-17T23:13:40.532991-08:00","closed_at":"2025-12-17T16:46:11.026693-08:00"} +{"id":"bd-cb64c226.8","title":"Update Metrics and Health Endpoints","description":"Remove cache-related metrics from health/metrics endpoints","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:49.212047-07:00","updated_at":"2025-12-17T23:18:29.110022-08:00","deleted_at":"2025-12-17T23:18:29.110022-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-411u","title":"Document BEADS_DIR pattern for multi-agent workspaces (Gas Town)","description":"Gas Town and similar multi-agent systems need to configure separate beads databases per workspace/rig, distinct from any project-level beads.\n\n## Use Case\n\nIn Gas Town:\n- Each 'rig' (managed project) has multiple agents (polecats, refinery, witness)\n- All agents in a rig should share a single beads database at the rig level\n- This should be separate from any .beads/ the project itself uses\n- The BEADS_DIR env var enables this\n\n## Documentation Needed\n\n1. Add a section to docs explaining BEADS_DIR for multi-agent setups\n2. Example: setting BEADS_DIR in agent startup scripts/hooks\n3. Clarify interaction with project-level .beads/ (BEADS_DIR takes precedence)\n\n## Current Support\n\nAlready implemented in internal/beads/beads.go:FindDatabasePath():\n- BEADS_DIR env var is checked first (preferred)\n- BEADS_DB env var still supported (deprecated)\n- Falls back to .beads/ search in tree\n\nJust needs documentation for the multi-agent workspace pattern.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-15T22:08:22.158027-08:00","updated_at":"2025-12-15T22:08:22.158027-08:00"} +{"id":"bd-kwro.3","title":"Graph Link: relates_to for knowledge graph","description":"Implement relates_to link type for loose associations.\n\nNew command:\n- bd relate \u003cid1\u003e \u003cid2\u003e - creates bidirectional relates_to link\n\nQuery support:\n- bd show \u003cid\u003e --related shows related issues\n- bd list --related-to \u003cid\u003e\n\nStorage:\n- relates_to stored as JSON array of issue IDs\n- Consider: separate junction table for efficiency at scale?\n\nThis enables 'see also' connections without blocking or hierarchy.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:30.793115-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-aydr","title":"Add bd reset command for clean slate restart","description":"Implement a `bd reset` command to reset beads to a clean starting state.\n\n## Context\nGitHub issue #479 - users sometimes get beads into an invalid state after updates, and there's no clean way to start fresh. The git backup/restore mechanism that protects against accidental deletion also makes it hard to intentionally reset.\n\n## Design\n\n### Command Interface\n```\nbd reset [--hard] [--force] [--backup] [--dry-run] [--no-init]\n```\n\n| Flag | Effect |\n|------|--------|\n| `--hard` | Also remove from git index and commit |\n| `--force` | Skip confirmation prompt |\n| `--backup` | Create `.beads-backup-{timestamp}/` first |\n| `--dry-run` | Preview what would happen |\n| `--no-init` | Don't re-initialize after clearing |\n\n### Reset Levels\n1. **Soft Reset (default)** - Kill daemons, clear .beads/, re-init. Git history unchanged.\n2. **Hard Reset (`--hard`)** - Also git rm and commit the removal, then commit fresh state.\n\n### Implementation Flow\n1. Validate .beads/ exists\n2. If not --force: show impact summary, prompt confirmation\n3. If --backup: copy .beads/ to .beads-backup-{timestamp}/\n4. Kill daemons\n5. If --hard: git rm + commit\n6. rm -rf .beads/*\n7. If not --no-init: bd init (and git add+commit if --hard)\n8. Print summary\n\n### Safety Mechanisms\n- Confirmation prompt (skip with --force)\n- Impact summary (issue/tombstone counts)\n- Backup option\n- Dry-run preview\n- Git dirty check warning\n\n### Code Structure\n- `cmd/bd/reset.go` - CLI command\n- `internal/reset/` - Core logic package","status":"closed","priority":2,"issue_type":"epic","created_at":"2025-12-13T08:44:01.38379+11:00","updated_at":"2025-12-13T06:24:29.561294-08:00","closed_at":"2025-12-13T10:18:19.965287+11:00"} +{"id":"bd-7bbc4e6a","title":"Add MCP server functions for repair commands","description":"**Summary:** Added MCP server repair functions for agent dependency management, system validation, and pollution detection. Implemented across BdClientBase, BdCliClient, and daemon clients to enhance system diagnostics and self-healing capabilities.\n\n**Key Decisions:** \n- Expose repair_deps(), detect_pollution(), validate() via MCP server\n- Create abstract method stubs with fallback to CLI execution\n- Use @mcp.tool decorators for function registration\n\n**Resolution:** Successfully implemented comprehensive repair command infrastructure, enabling more robust system health monitoring and automated remediation with full CLI and daemon support.","notes":"Implemented all three MCP server functions:\n\n1. **repair_deps(fix=False)** - Find/fix orphaned dependencies\n2. **detect_pollution(clean=False)** - Detect/clean test issues \n3. **validate(checks=None, fix_all=False)** - Run comprehensive health checks\n\nChanges:\n- Added abstract methods to BdClientBase\n- Implemented in BdCliClient (CLI execution)\n- Added NotImplementedError stubs in BdDaemonClient (falls back to CLI)\n- Created wrapper functions in tools.py\n- Registered @mcp.tool decorators in server.py\n\nAll commands tested and working with --no-daemon flag.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-28T19:37:55.72639-07:00","updated_at":"2025-12-16T01:08:11.983953-08:00","closed_at":"2025-11-07T19:38:12.152437-08:00"} +{"id":"bd-xj2e","title":"GH#522: Add --type flag to bd update command","description":"Add --type flag to bd update for changing issue type (task/epic/bug/feature). Storage layer already supports it. See GitHub issue #522.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:12.506583-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-fom","title":"Remove all deletions.jsonl code except migration","description":"There's deletions manifest code spread across the entire codebase that should have been removed after tombstone migration:\n\nFiles with deletions code (non-migration):\n- internal/deletions/ - entire package\n- cmd/bd/sync.go - 25+ references, auto-compact, sanitize\n- cmd/bd/delete.go - dual-writes to deletions.jsonl\n- internal/importer/importer.go - checks deletions manifest\n- internal/syncbranch/worktree.go - merges deletions.jsonl\n- cmd/bd/doctor/fix/sync.go - cleanupDeletionsManifest\n- cmd/bd/doctor/fix/deletions.go - HydrateDeletionsManifest\n- cmd/bd/integrity.go - checks deletions for data loss\n- cmd/bd/deleted.go - entire command\n- cmd/bd/compact.go - pruneDeletionsManifest\n- cmd/bd/doctor.go - checkDeletionsManifest\n- Plus many more\n\nAction: Aggressively remove all non-migration deletions code. Tombstones are the only deletion mechanism now.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T13:29:04.960863-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-i0rx","title":"Merge: bd-ao0s","description":"branch: polecat/rictus\ntarget: main\nsource_issue: bd-ao0s\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-20T01:13:42.716658-08:00","updated_at":"2025-12-20T01:13:42.716658-08:00"} +{"id":"bd-aydr.6","title":"Add unit tests for reset package","description":"Comprehensive unit tests for internal/reset package.\n\n## Test Cases\n\n### ValidateState tests\n- .beads/ exists ā†’ success\n- .beads/ missing ā†’ appropriate error\n- git dirty state detection\n\n### CountImpact tests \n- Empty .beads/ ā†’ zero counts\n- With issues ā†’ correct count (open vs closed)\n- With tombstones ā†’ correct count\n- Returns HasUncommitted correctly\n\n### Backup tests\n- Creates backup with correct timestamp format\n- Preserves all files and permissions\n- Returns correct path\n- Handles missing .beads/ gracefully\n- Errors on pre-existing backup dir\n\n### Git operation tests\n- CheckGitState detects dirty, detached, not-a-repo\n- GitRemoveBeads removes correct files\n- GitCommitReset creates commit with message\n- Operations skip gracefully when not in git repo\n\n### Reset tests (with mocks/temp dirs)\n- Soft reset removes files, calls init\n- Hard reset includes git operations\n- Dry run doesn't modify anything\n- SkipInit flag prevents re-initialization\n- Daemon killall is called\n- Backup is created when requested\n\n## Approach\n- Can start with interface definitions (TDD style)\n- Use testify for assertions\n- Create temp directories for isolation\n- Mock git operations where needed\n- Test completion depends on implementation tasks\n\n## File Location\n`internal/reset/reset_test.go`\n`internal/reset/backup_test.go`\n`internal/reset/git_test.go`","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:57.01739+11:00","updated_at":"2025-12-13T10:13:32.611698+11:00","closed_at":"2025-12-13T09:59:20.820314+11:00","dependencies":[{"issue_id":"bd-aydr.6","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:57.017813+11:00","created_by":"daemon"}]} +{"id":"bd-au0.6","title":"Add comprehensive filters to bd export","description":"Enhance bd export with filtering options for selective exports.\n\n**Currently only has:**\n- --status\n\n**Add filters:**\n- --label, --label-any\n- --assignee\n- --type\n- --priority, --priority-min, --priority-max\n- --created-after, --created-before\n- --updated-after, --updated-before\n\n**Use case:**\n- Export only open issues: bd export --status open\n- Export high-priority bugs: bd export --type bug --priority-max 1\n- Export recent issues: bd export --created-after 2025-01-01\n\n**Files to modify:**\n- cmd/bd/export.go\n- Reuse filter logic from list.go","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-21T21:07:19.431307-05:00","updated_at":"2025-11-21T21:07:19.431307-05:00","dependencies":[{"issue_id":"bd-au0.6","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:19.432983-05:00","created_by":"daemon"}]} +{"id":"bd-vpan","title":"Re: Thread Test 2","description":"Got your message. Testing reply feature.","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:29.144352-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-vpan","depends_on_id":"bd-x36g","type":"replies-to","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} +{"id":"bd-6gd","title":"Remove legacy MCP Agent Mail integration","description":"## Summary\n\nRemove the legacy MCP Agent Mail system that requires an external HTTP server. Keep the native `bd mail` system which stores messages as git-synced issues.\n\n## Background\n\nTwo mail systems exist in the codebase:\n1. **Legacy Agent Mail** (`bd message`) - External server dependency, complex setup\n2. **Native bd mail** (`bd mail`) - Built-in, git-synced, no dependencies\n\nThe legacy system causes confusion and is no longer needed. Gas Town's Town Mail will use the native `bd mail` system.\n\n## Files to Delete\n\n### CLI Command\n- [ ] `cmd/bd/message.go` - The `bd message` command implementation\n\n### MCP Integration\n- [ ] `integrations/beads-mcp/src/beads_mcp/mail.py` - HTTP wrapper for Agent Mail server\n- [ ] `integrations/beads-mcp/src/beads_mcp/mail_tools.py` - MCP tool definitions\n- [ ] `integrations/beads-mcp/tests/test_mail.py` - Tests for legacy mail\n\n### Documentation\n- [ ] `docs/AGENT_MAIL.md`\n- [ ] `docs/AGENT_MAIL_QUICKSTART.md`\n- [ ] `docs/AGENT_MAIL_DEPLOYMENT.md`\n- [ ] `docs/AGENT_MAIL_MULTI_WORKSPACE_SETUP.md`\n- [ ] `docs/adr/002-agent-mail-integration.md`\n\n## Code to Update\n\n- [ ] Remove `message` command registration from `cmd/bd/main.go`\n- [ ] Remove mail tool imports/registration from MCP server `__init__.py` or `server.py`\n- [ ] Check for any other references to Agent Mail in the codebase\n\n## Verification\n\n- [ ] `bd message` command no longer exists\n- [ ] `bd mail` command still works\n- [ ] MCP server starts without errors\n- [ ] Tests pass\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T23:04:04.099935-08:00","updated_at":"2025-12-17T23:13:24.128752-08:00","closed_at":"2025-12-17T23:13:24.128752-08:00"} +{"id":"bd-2wh","title":"Test pinned for stats","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-18T21:47:09.334108-08:00","updated_at":"2025-12-18T21:47:25.17917-08:00","deleted_at":"2025-12-18T21:47:25.17917-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-qqc.10","title":"Upgrade local Homebrew installation","description":"Upgrade bd via Homebrew:\n\n```bash\nbrew update\nbrew upgrade bd\n/opt/homebrew/bin/bd version # Verify shows {{version}}\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:37.60241-08:00","updated_at":"2025-12-18T23:07:55.686598-08:00","closed_at":"2025-12-18T22:52:00.331429-08:00","dependencies":[{"issue_id":"bd-qqc.10","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:37.603893-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.10","depends_on_id":"bd-qqc.9","type":"blocks","created_at":"2025-12-18T22:43:21.458817-08:00","created_by":"daemon"}]} +{"id":"bd-toy3","title":"Test hook","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T18:33:39.717036-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-r6a.1","title":"Revert/remove YAML workflow system","description":"Revert the recent commit and remove all YAML workflow code:\n\n1. `git revert aae8407a` (the commit we just pushed with workflow fixes)\n2. Remove `cmd/bd/templates/workflows/` directory\n3. Remove workflow.go or gut it to minimal stub\n4. Remove WorkflowTemplate types from internal/types/workflow.go\n5. Remove any workflow-related RPC handlers\n\nKeep only minimal scaffolding if needed for the new template system.","status":"closed","issue_type":"task","created_at":"2025-12-17T22:42:07.339684-08:00","updated_at":"2025-12-17T22:46:08.606088-08:00","closed_at":"2025-12-17T22:46:08.606088-08:00","dependencies":[{"issue_id":"bd-r6a.1","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:42:07.340117-08:00","created_by":"daemon"}]} +{"id":"bd-n3v","title":"Error committing to sync branch: failed to create worktree","description":"\u003e bd sync --no-daemon\nā†’ Exporting pending changes to JSONL...\nā†’ Committing changes to sync branch 'beads-sync'...\nError committing to sync branch: failed to create worktree: failed to create worktree parent directory: mkdir /var/home/matt/dev/beads/fix-ci/.git: not a directory","notes":"**Problem Diagnosed**: The `bd sync` command was failing with \"mkdir /var/home/matt/dev/beads/fix-ci/.git: not a directory\" because it was being executed from the wrong directory.\n\n**Root Cause**: The command was run from `/var/home/matt/dev/beads` (where the `fix-ci` worktree exists) instead of the main repository directory `/var/home/matt/dev/beads/main`. Since `fix-ci` is a git worktree with a `.git` file (not directory), the worktree creation logic failed when trying to create `\u003ccurrent_dir\u003e/.git/beads-worktrees/\u003cbranch\u003e`.\n\n**Solution Verified**: Execute `bd sync` from the main repository directory:\n```bash\ncd main \u0026\u0026 bd sync --dry-run\n```\n","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-05T15:25:24.514998248-07:00","updated_at":"2025-12-05T15:42:32.910166956-07:00"} +{"id":"bd-7h7","title":"bd init should stop running daemon to avoid stale cache","description":"When running bd init, any running daemon continues with stale cached data, causing bd stats and other commands to show old counts.\n\nRepro:\n1. Have daemon running with 788 issues cached\n2. Clean JSONL to 128 issues, delete db, run bd init\n3. bd stats still shows 788 (daemon cache)\n4. Must manually run bd daemon --stop\n\nFix: bd init should automatically stop any running daemon before reinitializing.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T13:26:47.117226-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-j6lr","title":"GH#402: Add --parent flag documentation to bd onboard","description":"bd onboard output is missing --parent flag for epic subtasks. Agents guess wrong syntax (--deps parent:). See GitHub issue #402.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:56.594829-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-dyy","title":"Review PR #513: fix hooks install docs","description":"Review and merge PR #513 from aspiers. This PR fixes incorrect docs for how to install git hooks - updates README to use bd hooks install instead of removed install.sh. Simple 1-line change. URL: https://github.com/anthropics/beads/pull/513","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:15:14.838772+11:00","updated_at":"2025-12-13T07:07:19.718544-08:00","closed_at":"2025-12-13T07:07:19.718544-08:00"} +{"id":"bd-kqo1","title":"Show pin indicator in bd list output","description":"Add a visual indicator (e.g., pin emoji or [P] marker) for pinned issues in bd list output so users can easily identify them.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-18T23:33:47.402549-08:00","updated_at":"2025-12-18T23:33:47.402549-08:00","dependencies":[{"issue_id":"bd-kqo1","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.771791-08:00","created_by":"daemon"},{"issue_id":"bd-kqo1","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.985271-08:00","created_by":"daemon"}]} +{"id":"bd-0zp7","title":"Add missing hook calls in mail reply and ack","description":"The mail commands are missing hook calls:\n\n1. runMailReply (mail.go:525-672) creates a message but doesn't call hookRunner.Run(hooks.EventMessage, ...) after creating the reply in direct mode (around line 640)\n\n2. runMailAck (mail.go:432-523) closes messages but doesn't call hookRunner.Run(hooks.EventClose, ...) after closing each message (around line 487 for daemon mode, 493 for direct mode)\n\nThis means GGT hooks won't fire for replies or message acknowledgments.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T20:52:53.069412-08:00","updated_at":"2025-12-17T23:13:40.532054-08:00","closed_at":"2025-12-17T17:22:59.368024-08:00"} +{"id":"bd-cbed9619.3","title":"Implement global N-way collision resolution algorithm","description":"**Summary:** Replaced pairwise collision resolution with a global N-way algorithm that deterministically resolves issue ID conflicts across multiple clones. The new approach groups collisions, deduplicates by content hash, and assigns sequential IDs to ensure consistent synchronization.\n\n**Key Decisions:**\n- Use content hash for global, stable sorting\n- Group collisions by base ID\n- Assign sequential IDs based on sorted unique versions\n- Eliminate order-dependent remapping logic\n\n**Resolution:** Implemented ResolveNWayCollisions function that guarantees deterministic issue ID assignment across multiple synchronization scenarios, solving the core challenge of maintaining consistency in distributed systems with potential conflicts.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:37:42.85616-07:00","updated_at":"2025-12-17T23:18:29.112335-08:00","dependencies":[{"issue_id":"bd-cbed9619.3","depends_on_id":"bd-cbed9619.5","type":"blocks","created_at":"2025-10-28T18:39:28.30886-07:00","created_by":"daemon"},{"issue_id":"bd-cbed9619.3","depends_on_id":"bd-cbed9619.4","type":"blocks","created_at":"2025-10-28T18:39:28.336312-07:00","created_by":"daemon"}],"deleted_at":"2025-12-17T23:18:29.112335-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-xctp","title":"GH#519: bd sync fails when sync.branch is currently checked-out branch","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:06:05.319281-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-hlsw.3","title":"Auto-recovery mode (bd sync --auto-recover)","description":"Add bd sync --auto-recover flag that: detects problematic sync state, backs up .beads/issues.db with timestamp, rebuilds DB from JSONL atomically, verifies consistency, reports what was fixed. Provides safety valve when sync integrity fails.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-14T10:40:20.599836875-07:00","updated_at":"2025-12-14T10:40:20.599836875-07:00","dependencies":[{"issue_id":"bd-hlsw.3","depends_on_id":"bd-hlsw","type":"parent-child","created_at":"2025-12-14T10:40:20.600435888-07:00","created_by":"daemon"}]} +{"id":"bd-4y4g","title":"Bump version in all files","description":"Run ./scripts/bump-version.sh {{version}} to update 10 version files. Then run with --commit after info.go is updated.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:01.859728-08:00","updated_at":"2025-12-18T22:46:24.537336-08:00","closed_at":"2025-12-18T22:46:24.537336-08:00","dependencies":[{"issue_id":"bd-4y4g","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.623724-08:00","created_by":"daemon"},{"issue_id":"bd-4y4g","depends_on_id":"bd-8v2","type":"blocks","created_at":"2025-12-18T22:43:20.823329-08:00","created_by":"daemon"}]} +{"id":"bd-t4u1","title":"False positive detection by Kaspersky Antivirus (Trojan)","description":"Kaspersky Antivirus falsely detects beads (bd.exe v0.23.1) as a Trojan (PDM:Trojan.Win32.Generic) and removes it.\nEvent: Malicious object detected\nComponent: System Watcher\nObject name: bd.exe\n","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-20T18:56:12.498187-05:00","updated_at":"2025-11-20T18:56:12.498187-05:00"} +{"id":"bd-muw","title":"Add empty tasks validation in workflow create","description":"workflow.go:321 will panic if wf.Tasks is empty. Add validation that len(wf.Tasks) \u003e 0 before accessing wf.Tasks[0].","status":"closed","priority":3,"issue_type":"bug","created_at":"2025-12-17T22:23:00.75707-08:00","updated_at":"2025-12-17T22:34:07.281133-08:00","closed_at":"2025-12-17T22:34:07.281133-08:00"} +{"id":"bd-aydr.2","title":"Implement backup functionality for reset","description":"Add backup capability that can be used by reset command.\n\n## Functionality\n- Copy .beads/ to .beads-backup-{timestamp}/\n- Timestamp format: YYYYMMDD-HHMMSS\n- Preserve file permissions\n- Return backup path for user feedback\n\n## Location\n`internal/reset/backup.go` - keep with reset package for now (YAGNI)\n\n## Interface\n```go\nfunc CreateBackup(beadsDir string) (backupPath string, err error)\n```\n\n## Notes\n- Simple recursive file copy, no compression needed\n- Error if backup dir already exists (unlikely with timestamp)\n- Backup directories SHOULD be gitignored\n- Add `.beads-backup-*/` pattern to .beads/.gitignore template in doctor package\n- Consider: ListBackups() for future `bd backup list` command (not for this PR)","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:51.306103+11:00","updated_at":"2025-12-13T10:13:32.610819+11:00","closed_at":"2025-12-13T09:20:20.590488+11:00","dependencies":[{"issue_id":"bd-aydr.2","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:51.306474+11:00","created_by":"daemon"}]} +{"id":"bd-4uoc","title":"Code Review Followup Summary: PR #481 + PR #551","description":"## Merged PRs Summary\n\n### PR #551: Persist close_reason to issues table\n- āœ… Merged successfully\n- āœ… Bug fix: close_reason now persisted in database column (not just events table)\n- āœ… Comprehensive test coverage added\n- āœ… Handles reopen case (clearing close_reason)\n\n**Followup Issues Filed:**\n- bd-lxzx: Document close_reason in JSONL export format\n- bd-077e: Update CLI documentation for close_reason field\n\n---\n\n### PR #481: Context Engineering Optimizations (80-90% context reduction)\n- āœ… Merged successfully \n- āœ… Lazy tool discovery: discover_tools() + get_tool_info()\n- āœ… Minimal issue models: IssueMinimal (~80% smaller than full Issue)\n- āœ… Result compaction: Auto-compacts results \u003e20 items\n- āœ… All 28 tests passing\n- āš ļø Breaking change: ready() and list() return type changed\n\n**Followup Issues Filed:**\n- bd-b318: Add integration tests for CompactedResult\n- bd-4u2b: Make compaction settings configurable (THRESHOLD, PREVIEW_COUNT)\n- bd-2kf8: Document CompactedResult response format in CONTEXT_ENGINEERING.md\n- bd-pdr2: Document backwards compatibility considerations\n\n---\n\n## Overall Assessment\n\nBoth PRs are production-ready with solid implementations. All critical functionality works and tests pass. Followup issues focus on:\n1. Documentation improvements (5 issues)\n2. Integration test coverage (1 issue)\n3. Configuration flexibility (1 issue)\n4. Backwards compatibility guidance (1 issue)\n\nNo critical bugs or design issues found.\n\n## Review Completed By\nCode review process completed. Issues auto-created for tracking improvements.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:59.214886-08:00","updated_at":"2025-12-14T14:25:59.214886-08:00","dependencies":[{"issue_id":"bd-4uoc","depends_on_id":"bd-otf4","type":"discovered-from","created_at":"2025-12-14T14:25:59.216884-08:00","created_by":"stevey"},{"issue_id":"bd-4uoc","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:59.217296-08:00","created_by":"stevey"}]} +{"id":"bd-lxzx","title":"Add close_reason to JSONL export format documentation","description":"PR #551 now persists close_reason to the database, but there's a question about whether this field should be exported to JSONL format.\n\n## Current State\n- close_reason is stored in issues.close_reason column\n- close_reason is also stored in events table (audit trail)\n- The JSONL export format may or may not include close_reason\n\n## Questions\n1. Should close_reason be exported to JSONL format?\n2. If yes, where should it go (root level or nested in events)?\n3. Should there be any special handling to avoid duplication?\n4. How should close_reason be handled during JSONL import?\n\n## Why This Matters\n- JSONL is the git-friendly sync format\n- Other beads instances import from JSONL\n- close_reason is meaningful data that should be preserved across clones\n\n## Suggested Action\n- Check if close_reason is currently exported in JSONL\n- If not, add it to the export schema\n- Document the field in JSONL format spec\n- Add tests for round-trip (export -\u003e import -\u003e verify close_reason)","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:17.414916-08:00","updated_at":"2025-12-14T14:25:17.414916-08:00","dependencies":[{"issue_id":"bd-lxzx","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:17.416131-08:00","created_by":"stevey"}]} +{"id":"bd-90v","title":"bd prime: AI context loading and Claude Code integration","description":"Implement `bd prime` command and Claude Code hooks for context recovery. Hooks work with BOTH MCP server and CLI approaches - they solve the context memory problem (keeping bd workflow fresh after compaction) not the tool access problem (MCP vs CLI).","status":"open","priority":2,"issue_type":"epic","created_at":"2025-11-11T23:31:12.119012-08:00","updated_at":"2025-11-12T00:11:07.743189-08:00"} +{"id":"bd-ncwo","title":"Ghost resurrection: remote status:closed wins during git merge","description":"During bd sync, the 3-way git merge sometimes keeps remote's status:closed instead of local's status:tombstone. This causes ghost issues to resurrect even when tombstones exist.\n\nRoot cause: Git 3-way merge doesn't understand tombstone semantics. If base had closed, local changed to tombstone, and remote has closed, git might keep remote's version.\n\nThe early tombstone check in importer.go only prevents CREATION when tombstones exist in DB. But if applyDeletionsFromMerge hard-deletes the tombstones before import runs (because they're not in the merged result), the check doesn't help.\n\nPotential fixes:\n1. Make tombstones 'win' in the beads merge driver (internal/merge/merge.go)\n2. Don't hard-delete tombstones in applyDeletionsFromMerge if they're in the DB\n3. Export tombstones to a separate file that's not subject to merge\n\nGhost issues: bd-cb64c226.*, bd-cbed9619.*","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T22:01:03.56423-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-74w1","title":"Consolidate duplicate path-finding utilities (findJSONLPath, findBeadsDir, findGitRoot)","description":"Code health review found these functions defined in multiple places:\n\n- findJSONLPath() in autoflush.go:45-73 and doctor/fix/migrate.go\n- findBeadsDir() in autoimport.go:197-239 (with git worktree handling)\n- findGitRoot() in autoimport.go:242-269 (Windows path conversion)\n\nThe beads package has public FindBeadsDir() and FindJSONLPath() APIs that should be used consistently.\n\nImpact: Bug fixes need to be applied in multiple places. Git worktree handling may not be replicated everywhere.\n\nFix: Consolidate all implementations to use the beads package APIs. Remove duplicates.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-16T18:17:16.694293-08:00","updated_at":"2025-12-16T18:17:16.694293-08:00","dependencies":[{"issue_id":"bd-74w1","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.526122-08:00","created_by":"daemon"}]} +{"id":"bd-dsp","title":"Test stdin body-file","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T17:27:32.098806-08:00","updated_at":"2025-12-17T17:28:33.832749-08:00","closed_at":"2025-12-17T17:28:33.832749-08:00"} +{"id":"bd-c3u","title":"Review PR #512: clarify bd ready docs","description":"Review and merge PR #512 from aspiers. This PR clarifies what bd ready does after git pull in README.md. Simple 1-line change. URL: https://github.com/anthropics/beads/pull/512","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:15:13.405161+11:00","updated_at":"2025-12-13T07:07:29.641265-08:00","closed_at":"2025-12-13T07:07:29.641265-08:00"} +{"id":"bd-fgw3","title":"Update local installation","description":"Run install script or brew upgrade to get new version locally: curl -fsSL .../install.sh | bash","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:05.052016-08:00","updated_at":"2025-12-20T00:49:51.928221-08:00","closed_at":"2025-12-20T00:25:52.805029-08:00","dependencies":[{"issue_id":"bd-fgw3","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.248427-08:00","created_by":"daemon"},{"issue_id":"bd-fgw3","depends_on_id":"bd-si4g","type":"blocks","created_at":"2025-12-19T22:56:23.497325-08:00","created_by":"daemon"}]} +{"id":"bd-an4s","title":"Version Bump: 0.32.1","description":"Release checklist for version 0.32.1. Patch release with MCP output control params and pin field fix.","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-20T21:53:01.315592-08:00","updated_at":"2025-12-20T21:57:13.909864-08:00","closed_at":"2025-12-20T21:57:13.909864-08:00"} +{"id":"bd-49kw","title":"Workaround for FastMCP outputSchema bug in Claude Code","description":"The beads MCP server (v0.23.1) successfully connects to Claude Code, but all tools fail to load with a schema validation error due to a bug in FastMCP 2.13.1.\n\nError: \"Invalid literal value, expected \\\"object\\\"\" in outputSchema.\n\nRoot Cause: FastMCP generates outputSchema with $ref at root level without \"type\": \"object\" for self-referential models (Issue).\n\nWorkaround: Use slash commands (/beads:ready) or wait for FastMCP fix.\n","status":"open","priority":1,"issue_type":"bug","created_at":"2025-11-20T18:55:39.041831-05:00","updated_at":"2025-11-20T18:55:39.041831-05:00"} +{"id":"bd-7di","title":"worktree: any bd command is slow","description":"in a git worktree any bd command is slow, with a 2-3s pause before any results are shown. The identical command with `--no-daemon` is near instant.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-05T15:33:42.924618693-07:00","updated_at":"2025-12-05T15:33:42.924618693-07:00"} +{"id":"bd-y8bj","title":"Auto-detect identity from directory context for bd mail","description":"Currently bd mail inbox defaults to git user name, requiring --identity flag with exact format.\n\n## Problem\n- Mail sent to `gastown/crew/max`\n- Max runs `bd mail inbox` ā†’ defaults to 'Steve Yegge' (git user)\n- Max must know to use `--identity 'gastown/crew/max'` with exact slashes\n\n## Proposed Fix\nAuto-detect identity from directory context when in a Gas Town workspace:\n- In `/Users/stevey/gt/gastown/crew/max`, infer identity = `gastown/crew/max`\n- Pattern: `\u003ctown\u003e/\u003crig\u003e/\u003crole\u003e/\u003cname\u003e` ā†’ `\u003crig\u003e/\u003crole\u003e/\u003cname\u003e`\n\n## Additional Improvements\n1. Support GT_IDENTITY env var (set by gt crew at / session spawning)\n2. Support identity in .beads/config.yaml\n3. Normalize format: accept both slashes and dashes as equivalent\n\n## Context\nDiscovered during crew-to-crew work assignment. Max couldn't see mail despite correct nudge because identity defaulted wrong.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-20T17:22:53.938586-08:00","updated_at":"2025-12-20T18:12:58.472262-08:00","closed_at":"2025-12-20T17:58:51.034201-08:00"} +{"id":"bd-aydr.3","title":"Add git operations for --hard reset","description":"Implement git integration for hard reset mode.\n\n## Operations Needed\n1. `git rm -rf .beads/*.jsonl` - remove data files from index\n2. `git commit -m 'beads: reset to clean state'` - commit removal\n3. After re-init: `git add .beads/` and commit fresh state\n\n## Edge Cases to Handle\n- Uncommitted changes in .beads/ - warn or error\n- Detached HEAD state - warn, maybe block\n- Git not initialized - skip git ops, warn\n- Git operations fail mid-way - clear error messaging\n\n## Interface\n```go\ntype GitState struct {\n IsRepo bool\n IsDirty bool // uncommitted changes in .beads/\n IsDetached bool // detached HEAD\n Branch string // current branch name\n}\n\nfunc CheckGitState(beadsDir string) (*GitState, error)\nfunc GitRemoveBeads(beadsDir string) error\nfunc GitCommitReset(message string) error\nfunc GitAddAndCommit(beadsDir, message string) error\n```\n\n## Location\n`internal/reset/git.go` - keep with reset package for now\n\nNote: Codebase has no central git package. internal/compact/git.go is compact-specific.\nFuture refactoring could extract shared git utilities, but YAGNI for now.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:52.798312+11:00","updated_at":"2025-12-13T10:13:32.611131+11:00","closed_at":"2025-12-13T09:17:40.785927+11:00","dependencies":[{"issue_id":"bd-aydr.3","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:52.798715+11:00","created_by":"daemon"}]} +{"id":"bd-x3j8","title":"Update info.go versionChanges","description":"Add 0.32.1 entry to versionChanges map in cmd/bd/info.go","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:17.344841-08:00","updated_at":"2025-12-20T21:54:31.906761-08:00","closed_at":"2025-12-20T21:54:31.906761-08:00","dependencies":[{"issue_id":"bd-x3j8","depends_on_id":"bd-rgd7","type":"blocks","created_at":"2025-12-20T21:53:29.62309-08:00","created_by":"daemon"},{"issue_id":"bd-x3j8","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:17.346736-08:00","created_by":"daemon"}]} +{"id":"bd-4qfb","title":"Improve bd doctor output formatting for better readability","description":"The current bd doctor output is a wall of text that's hard to process. Consider improvements like:\n- Grouping related checks into collapsible sections\n- Using color/bold for section headers\n- Showing only failures/warnings by default with --verbose for full output\n- Better visual hierarchy between major sections\n- Summary line at top (e.g., '24 checks passed, 0 warnings, 0 errors')","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T09:29:27.557578+11:00","updated_at":"2025-12-13T09:29:27.557578+11:00"} +{"id":"bd-su45","title":"Protect pinned issues from bd cleanup/compact","description":"Update bd cleanup and bd compact to never delete pinned issues, even if they are closed. Pinned issues should persist indefinitely as reference material.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:46.204783-08:00","updated_at":"2025-12-19T17:43:35.712617-08:00","closed_at":"2025-12-19T00:43:04.06406-08:00","dependencies":[{"issue_id":"bd-su45","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.64582-08:00","created_by":"daemon"},{"issue_id":"bd-su45","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.857586-08:00","created_by":"daemon"}]} +{"id":"bd-pbh.5","title":"Update .claude-plugin/marketplace.json to 0.30.4","description":"Update version field in .claude-plugin/marketplace.json:\n```json\n\"version\": \"0.30.4\"\n```\n\n\n```verify\njq -e '.plugins[0].version == \"0.30.4\"' .claude-plugin/marketplace.json\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.985619-08:00","updated_at":"2025-12-17T21:46:46.239122-08:00","closed_at":"2025-12-17T21:46:46.239122-08:00","dependencies":[{"issue_id":"bd-pbh.5","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.985942-08:00","created_by":"daemon"}]} +{"id":"bd-8hy","title":"Kill running daemons","description":"Stop all bd daemons before release:\n\n```bash\npkill -f 'bd.*daemon' || true\nsleep 1\npgrep -lf 'bd.*daemon' # Should show nothing\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:58.255478-08:00","updated_at":"2025-12-18T22:43:55.394966-08:00","closed_at":"2025-12-18T22:43:55.394966-08:00","dependencies":[{"issue_id":"bd-8hy","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.23168-08:00","created_by":"daemon"}]} +{"id":"bd-56x","title":"Review PR #514: fix plugin install docs","description":"Review and merge PR #514 from aspiers. This PR fixes incorrect docs for installing Claude Code plugin from source in docs/PLUGIN.md. Clarifies shell vs Claude Code commands and fixes the . vs ./beads argument issue. URL: https://github.com/anthropics/beads/pull/514","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:15:16.865354+11:00","updated_at":"2025-12-13T07:07:19.729213-08:00","closed_at":"2025-12-13T07:07:19.729213-08:00"} +{"id":"bd-cbed9619.4","title":"Make DetectCollisions read-only (separate detection from modification)","description":"**Summary:** The project restructured the collision detection process in the database to separate read-only detection from state modification, eliminating race conditions and improving system reliability. This was achieved by introducing a two-phase approach: first detecting potential collisions, then applying resolution separately.\n\n**Key Decisions:**\n- Create read-only DetectCollisions method\n- Add RenameDetail to track potential issue renames\n- Implement atomic ApplyCollisionResolution function\n- Separate detection logic from database modification\n\n**Resolution:** The refactoring creates a more robust, composable collision handling mechanism that prevents partial failures and maintains database consistency during complex issue import scenarios.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:37:09.652326-07:00","updated_at":"2025-12-17T23:18:29.112637-08:00","dependencies":[{"issue_id":"bd-cbed9619.4","depends_on_id":"bd-cbed9619.5","type":"blocks","created_at":"2025-10-28T18:39:28.285653-07:00","created_by":"daemon"}],"deleted_at":"2025-12-17T23:18:29.112637-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-2oo.2","title":"Remove redundant edge fields from Issue struct","description":"Remove from Issue struct:\n- RepliesTo -\u003e dependency with type replies-to\n- RelatesTo -\u003e dependencies with type relates-to \n- DuplicateOf -\u003e dependency with type duplicates\n- SupersededBy -\u003e dependency with type supersedes\n\nKeep: Sender, Ephemeral (these are attributes, not relationships)","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:00.891206-08:00","updated_at":"2025-12-18T02:49:10.584381-08:00","closed_at":"2025-12-18T02:49:10.584381-08:00","dependencies":[{"issue_id":"bd-2oo.2","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:00.891655-08:00","created_by":"daemon"}]} +{"id":"bd-in7","title":"Test message","description":"Hello world","status":"closed","priority":2,"issue_type":"message","created_at":"2025-12-17T23:16:13.184946-08:00","updated_at":"2025-12-18T17:42:26.000073-08:00","closed_at":"2025-12-17T23:37:38.563369-08:00"} +{"id":"bd-au0","title":"Command Set Standardization \u0026 Flag Consistency","description":"Comprehensive improvements to bd command set based on 2025 audit findings.\n\n## Background\nSee docs/command-audit-2025.md for detailed analysis.\n\n## Goals\n1. Standardize flag naming and behavior across all commands\n2. Add missing flags for feature parity\n3. Fix naming confusion\n4. Improve consistency in JSON output\n\n## Success Criteria\n- All mutating commands support --dry-run (no --preview variants)\n- bd update supports label operations\n- bd search has filter parity with bd list\n- Priority flags accept both int and P0-P4 format everywhere\n- JSON output is consistent across all commands","status":"open","priority":2,"issue_type":"epic","created_at":"2025-11-21T21:05:55.672749-05:00","updated_at":"2025-11-21T21:05:55.672749-05:00"} +{"id":"bd-ork0","title":"Add comments to 30+ silently ignored errors or fix them","description":"Code health review found 30+ instances of error suppression using blank identifier without explanation:\n\nGood examples (with comments):\n- merge.go: _ = gitRmCmd.Run() // Ignore errors\n- daemon_watcher.go: _ = watcher.Add(...) // Ignore error\n\nBad examples (no context):\n- create.go:213: dbPrefix, _ = store.GetConfig(ctx, \"issue_prefix\")\n- daemon_sync_branch.go: _ = daemonClient.Close()\n- migrate_hash_ids.go, version_tracking.go: _ = store.Close()\n\nFix: Add comments explaining WHY errors are ignored, or handle them properly.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:25.899372-08:00","updated_at":"2025-12-16T18:17:25.899372-08:00","dependencies":[{"issue_id":"bd-ork0","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.275843-08:00","created_by":"daemon"}]} +{"id":"bd-zf5w","title":"bd mail uses git user.name for sender instead of BEADS_AGENT_NAME","description":"When sending mail via `bd mail send`, the sender field in the stored issue uses git config user.name instead of the BEADS_AGENT_NAME environment variable.\n\nReproduction:\n1. Set BEADS_AGENT_NAME=gastown-alpha\n2. Run: bd mail send mayor/ -s 'Test' -m 'Body'\n3. Check the issue.jsonl: sender is 'Steve Yegge' (git user.name) not 'gastown-alpha'\n\nExpected: The sender field should use BEADS_AGENT_NAME when set.\n\nThis breaks the mail system for multi-agent workflows where agents need to identify themselves by their role (polecat, refinery, etc.) rather than the human user's git identity.\n\nRelated: gt mail routing integration with Gas Town","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-20T21:46:33.646746-08:00","updated_at":"2025-12-20T21:46:33.646746-08:00"} +{"id":"bd-zwtq","title":"Run bd doctor at end of bd init to verify setup","description":"Run bd doctor diagnostics at end of bd init (after line 398 in init.go). If issues found, warn user immediately: 'āš  Setup incomplete. Run bd doctor --fix to complete setup.' Catches configuration problems before user encounters them in normal workflow.","status":"open","priority":1,"issue_type":"feature","created_at":"2025-11-21T23:16:09.596778-08:00","updated_at":"2025-11-21T23:16:27.781976-08:00","dependencies":[{"issue_id":"bd-zwtq","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:09.597617-08:00","created_by":"daemon"}]} From ecea63da75f3fd3739b83a8b7bc0dbd121e1583a Mon Sep 17 00:00:00 2001 From: Steve Yegge Date: Sat, 20 Dec 2025 21:59:07 -0800 Subject: [PATCH 14/18] bd sync: 2025-12-20 21:59:07 --- .beads/issues.jsonl | 616 ++++++++++++++++++++++---------------------- 1 file changed, 308 insertions(+), 308 deletions(-) diff --git a/.beads/issues.jsonl b/.beads/issues.jsonl index 5a69af54..559854f7 100644 --- a/.beads/issues.jsonl +++ b/.beads/issues.jsonl @@ -1,318 +1,318 @@ -{"id":"bd-89f89fc0","title":"Remove unreachable RPC methods","description":"Several RPC server and client methods are unreachable and should be removed:\n\nServer methods (internal/rpc/server.go):\n- `Server.GetLastImportTime` (line 2116)\n- `Server.SetLastImportTime` (line 2123)\n- `Server.findJSONLPath` (line 2255)\n\nClient methods (internal/rpc/client.go):\n- `Client.Import` (line 311) - RPC import not used (daemon uses autoimport)\n\nEvidence:\n```bash\ngo run golang.org/x/tools/cmd/deadcode@latest -test ./...\n```\n\nImpact: Removes ~80 LOC of unused RPC code","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-28T16:20:02.432202-07:00","updated_at":"2025-12-17T22:58:34.564401-08:00","closed_at":"2025-12-17T22:58:34.564401-08:00"} -{"id":"bd-cils","title":"Work on beads-2nh: Fix gt spawn --issue to find issues in...","description":"Work on beads-2nh: Fix gt spawn --issue to find issues in rig's beads database. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:47.573854-08:00","updated_at":"2025-12-20T00:49:51.927884-08:00","closed_at":"2025-12-19T23:28:28.605343-08:00"} -{"id":"bd-e1085716","title":"bd validate - Comprehensive health check","description":"Run all validation checks in one command.\n\nChecks:\n- Duplicates\n- Orphaned dependencies\n- Test pollution\n- Git conflicts\n\nSupports --fix-all for auto-repair.\n\nDepends on bd-cbed9619.1, bd-0dcea000, bd-31aab707, bd-9826b69a.\n\nFiles: cmd/bd/validate.go (new)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-10-29T23:05:13.980679-07:00","updated_at":"2025-12-17T22:58:34.562008-08:00","closed_at":"2025-12-17T22:58:34.562008-08:00"} -{"id":"bd-077e","title":"Add close_reason field to CLI schema and documentation","description":"PR #551 persists close_reason, but the CLI documentation may not mention this field as part of the issue schema.\n\n## Current State\n- close_reason is now persisted in database\n- `bd show --json` will return close_reason in JSON output\n- Documentation may not reflect this new field\n\n## What's Missing\n- CLI reference documentation for close_reason field\n- Schema documentation showing close_reason is a top-level issue field\n- Example output showing close_reason in bd show --json\n- bd close command documentation should mention close_reason parameter is optional\n\n## Suggested Action\n1. Update README.md or CLI reference docs to list close_reason as an issue field\n2. Add example to bd close documentation\n3. Update any type definitions or schema specs\n4. Consider adding close_reason to verbose list output (bd list --verbose)","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-14T14:25:28.448654-08:00","updated_at":"2025-12-14T14:25:28.448654-08:00","dependencies":[{"issue_id":"bd-077e","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:28.449968-08:00","created_by":"stevey"}]} -{"id":"bd-r46","title":"Support --reason flag in daemon mode for reopen command","description":"The reopen.go command has a TODO at line 61 to add reason as a comment once RPC supports AddComment. Currently --reason flag is ignored in daemon mode with a warning.","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-21T18:55:10.773626-05:00","updated_at":"2025-11-21T18:55:10.773626-05:00"} -{"id":"bd-d3e5","title":"Test issue 2","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-14T11:21:13.878680387-07:00","updated_at":"2025-12-14T11:21:13.878680387-07:00","closed_at":"2025-12-14T00:32:13.890274-08:00"} -{"id":"bd-vgi5","title":"Push version bump to GitHub","description":"git push origin main - triggers CI but no release yet.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:05.363604-08:00","updated_at":"2025-12-18T22:46:57.50777-08:00","closed_at":"2025-12-18T22:46:57.50777-08:00","dependencies":[{"issue_id":"bd-vgi5","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.87736-08:00","created_by":"daemon"},{"issue_id":"bd-vgi5","depends_on_id":"bd-3ggb","type":"blocks","created_at":"2025-12-18T22:43:21.078208-08:00","created_by":"daemon"}]} -{"id":"bd-r6a","title":"Redesign workflow system: templates as native Beads","description":"## Problem\n\nThe current workflow system (YAML templates in cmd/bd/templates/workflows/) is architecturally flawed:\n\n1. **Out-of-band data plane** - YAML files are a parallel system outside Beads itself\n2. **Heavyweight DSL** - YAML is gross; even TOML would have been better, but neither is ideal\n3. **Not graph-native** - Beads IS already a dependency graph with priorities, so why reinvent it?\n4. **Can't use bd commands on templates** - They're opaque YAML, not viewable/editable Beads\n\n## The Right Design\n\n**Templates should be Beads themselves.**\n\nA \"workflow template\" should be:\n- An epic marked as a template (via label, type, or prefix like `tpl-`)\n- Child issues with dependencies between them (using normal bd dep)\n- Titles and descriptions containing `{{variable}}` placeholders\n- Normal priorities that control serialization order\n\n\"Instantiation\" becomes:\n1. Clone the template subgraph (epic + children + dependencies)\n2. Substitute variables in titles/descriptions\n3. Generate new IDs for all cloned issues\n4. Return the new epic ID\n\n## Benefits\n\n- **No YAML** - Templates are just Beads\n- **Use existing tools** - `bd show`, `bd edit`, `bd dep` work on templates\n- **Graph-native** - Dependencies are real Beads dependencies\n- **Simpler codebase** - Remove all the YAML parsing/workflow code\n- **Composable** - Templates can reference other templates\n\n## Tasks\n\n1. Delete the YAML workflow system code (revert recent push + remove existing workflow code)\n2. Design template marking convention (label? type? id prefix?)\n3. Implement `bd template create` or `bd clone --as-template`\n4. Implement `bd template instantiate \u003ctemplate-id\u003e --var key=value`\n5. Migrate version-bump workflow to native Beads template\n6. Update documentation","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-17T22:41:57.359643-08:00","updated_at":"2025-12-18T17:42:26.000769-08:00","closed_at":"2025-12-18T13:47:04.632525-08:00"} -{"id":"bd-y8tn","title":"Test Molecule","description":"A test molecule","status":"closed","priority":2,"issue_type":"molecule","created_at":"2025-12-19T18:30:24.491279-08:00","updated_at":"2025-12-19T18:31:12.49898-08:00","closed_at":"2025-12-19T18:31:12.49898-08:00"} -{"id":"bd-pbh.18","title":"Restart beads daemon","description":"Kill any running daemons so they pick up the new version:\n```bash\nbd daemons killall\n```\n\nStart fresh daemon:\n```bash\nbd list # triggers daemon start\n```\n\nVerify daemon version:\n```bash\nbd version --daemon\n```\n\n\n```verify\nbd version --daemon 2\u003e\u00261 | grep -q '0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.11636-08:00","updated_at":"2025-12-17T21:46:46.364842-08:00","closed_at":"2025-12-17T21:46:46.364842-08:00","dependencies":[{"issue_id":"bd-pbh.18","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.116706-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.18","depends_on_id":"bd-pbh.17","type":"blocks","created_at":"2025-12-17T21:19:11.330411-08:00","created_by":"daemon"}]} -{"id":"bd-pe4s","title":"JSON test issue","description":"Line 1\nLine 2\nLine 3","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T16:14:36.969074-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-pbh.4","title":"Update .claude-plugin/plugin.json to 0.30.4","description":"Update version field in .claude-plugin/plugin.json:\n```json\n\"version\": \"0.30.4\"\n```\n\n\n```verify\njq -e '.version == \"0.30.4\"' .claude-plugin/plugin.json\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.976866-08:00","updated_at":"2025-12-17T21:46:46.23159-08:00","closed_at":"2025-12-17T21:46:46.23159-08:00","dependencies":[{"issue_id":"bd-pbh.4","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.97729-08:00","created_by":"daemon"}]} -{"id":"bd-a15d","title":"Add test files for internal/storage","description":"The internal/storage package has no test files at all. This package provides the storage interface abstraction.\n\nCurrent coverage: N/A (no test files)\nTarget: Add basic interface tests","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:11.363017-08:00","updated_at":"2025-12-13T21:01:20.925779-08:00"} -{"id":"bd-4hn","title":"wish: list \u0026 ready show issues as hierarchy tree","description":"`bd ready` and `bd list` just show a flat list, and it's up to the reader to parse which ones are dependent or sub-issues of others. It would be much easier to understand if they were shown in a tree format","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-08T06:38:24.016316945-07:00","updated_at":"2025-12-08T06:39:04.065882225-07:00"} -{"id":"bd-dp4w","title":"Test message","description":"This is a test message body","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:11:58.467876-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} -{"id":"bd-pbh.14","title":"Monitor PyPI publish","description":"Watch the PyPI publish action:\nhttps://github.com/steveyegge/beads/actions/workflows/pypi-publish.yml\n\nVerify at: https://pypi.org/project/beads-mcp/0.30.4/\n\nCheck:\n```bash\npip index versions beads-mcp 2\u003e/dev/null | grep -q '0.30.4'\n```\n\n\n```verify\npip index versions beads-mcp 2\u003e/dev/null | grep -q '0.30.4' || curl -s https://pypi.org/pypi/beads-mcp/json | jq -e '.releases[\"0.30.4\"]'\n```","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.083809-08:00","updated_at":"2025-12-17T21:46:46.320922-08:00","closed_at":"2025-12-17T21:46:46.320922-08:00","dependencies":[{"issue_id":"bd-pbh.14","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.084126-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.14","depends_on_id":"bd-pbh.12","type":"blocks","created_at":"2025-12-17T21:19:11.289698-08:00","created_by":"daemon"}]} -{"id":"bd-kyo","title":"Run tests and linting","description":"Run the full test suite and linter:\n\n```bash\nTMPDIR=/tmp go test -short ./...\ngolangci-lint run ./...\n```\n\nFix any failures. Linting warnings acceptable (see LINTING.md).","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:59.290588-08:00","updated_at":"2025-12-18T22:44:36.570262-08:00","closed_at":"2025-12-18T22:44:36.570262-08:00","dependencies":[{"issue_id":"bd-kyo","depends_on_id":"bd-8hy","type":"blocks","created_at":"2025-12-18T22:43:20.570742-08:00","created_by":"daemon"},{"issue_id":"bd-kyo","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.370234-08:00","created_by":"daemon"}]} -{"id":"bd-m8ro","title":"Improve test coverage for internal/rpc (47.5% ā†’ 60%)","description":"The RPC package has only 47.5% test coverage. RPC is the communication layer for daemon operations.\n\nCurrent coverage: 47.5%\nTarget coverage: 60%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:09.515299-08:00","updated_at":"2025-12-13T21:01:17.17404-08:00"} -{"id":"bd-3sz0","title":"Auto-repair stale merge driver configs with invalid placeholders","description":"Old bd versions (\u003c0.24.0) installed merge driver with invalid placeholders %L %R instead of %A %B. Add detection to bd doctor --fix: check if git config merge.beads.driver contains %L or %R, auto-repair to 'bd merge %A %O %A %B'. One-time migration for users who initialized with old versions.","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-21T23:16:10.762808-08:00","updated_at":"2025-11-21T23:16:28.892655-08:00","dependencies":[{"issue_id":"bd-3sz0","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:10.763612-08:00","created_by":"daemon"}]} -{"id":"bd-qqc.11","title":"Update go install bd to {{version}}","description":"Rebuild and install bd to ~/go/bin:\n\n```bash\ngo install ./cmd/bd\n~/go/bin/bd version # Verify shows {{version}}\n```\n\nNote: If ~/go/bin is in PATH before /opt/homebrew/bin, this is the version that runs by default.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:07:55.838013-08:00","updated_at":"2025-12-18T23:09:05.775582-08:00","closed_at":"2025-12-18T23:09:05.775582-08:00","dependencies":[{"issue_id":"bd-qqc.11","depends_on_id":"bd-qqc.10","type":"blocks","created_at":"2025-12-18T23:08:19.629947-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.11","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T23:07:55.838432-08:00","created_by":"daemon"}]} -{"id":"bd-7yg","title":"Git merge driver uses invalid placeholders (%L, %R instead of %A, %B)","description":"## Problem\n\nThe beads git merge driver is configured with invalid Git placeholders:\n\n```\ngit config merge.beads.driver \"bd merge %A %O %L %R\"\n```\n\nGit doesn't recognize `%L` or `%R` as valid merge driver placeholders. The valid placeholders are:\n- `%O` = base (common ancestor)\n- `%A` = current version (ours)\n- `%B` = other version (theirs)\n\n## Impact\n\n- Affects ALL users when they have `.beads/beads.jsonl` merge conflicts\n- Automatic JSONL merge fails with error: \"error reading left file: failed to open file: open 7: no such file or directory\"\n- Users must manually resolve conflicts instead of getting automatic merge\n\n## Root Cause\n\nThe `bd init` command (or wherever the merge driver is configured) is using non-standard placeholders. When Git encounters `%L` and `%R`, it either passes them literally or interprets them incorrectly.\n\n## Fix\n\nUpdate the merge driver configuration to:\n```\ngit config merge.beads.driver \"bd merge %A %O %A %B\"\n```\n\nWhere:\n- 1st `%A` = output file (current file, will be overwritten)\n- `%O` = base (common ancestor)\n- 2nd `%A` = left/current version\n- `%B` = right/other version\n\n## Action Items\n\n1. Fix `bd init` (or equivalent setup command) to use correct placeholders\n2. Add migration/warning for existing users with misconfigured merge driver\n3. Update documentation with correct merge driver setup\n4. Consider adding validation when `bd init` is run","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-21T19:51:55.747608-05:00","updated_at":"2025-12-17T23:13:40.532368-08:00","closed_at":"2025-12-17T17:24:52.678668-08:00"} -{"id":"bd-s2t","title":"wish: a 'continue' or similar cmd/flag which means alter last issue","description":"so many time I create an issue and then have another thought: 'oh, before I did X and it crashed there was ZZZ happening' or 'actually that is P4 not P2'. It would be nice if when `bd {cmd}` is used without a {title} or {id} it just adds or updates the most recently touched issue.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-08T06:46:37.529160416-07:00","updated_at":"2025-12-08T06:46:37.529160416-07:00"} -{"id":"bd-bw6","title":"Fix G104 errors unhandled in internal/storage/sqlite/queries.go:1181","description":"Linting issue: G104: Errors unhandled (gosec) at internal/storage/sqlite/queries.go:1181:4. Error: rows.Close()","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:09.008444133-07:00","updated_at":"2025-12-17T23:13:40.536627-08:00","closed_at":"2025-12-17T16:46:11.029355-08:00"} -{"id":"bd-pbh.7","title":"Update beads_mcp/__init__.py to 0.30.4","description":"Update __version__ in integrations/beads-mcp/src/beads_mcp/__init__.py:\n```python\n__version__ = \"0.30.4\"\n```\n\n\n```verify\ngrep -q '__version__ = \"0.30.4\"' integrations/beads-mcp/src/beads_mcp/__init__.py\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.005334-08:00","updated_at":"2025-12-17T21:46:46.254885-08:00","closed_at":"2025-12-17T21:46:46.254885-08:00","dependencies":[{"issue_id":"bd-pbh.7","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.005699-08:00","created_by":"daemon"}]} -{"id":"bd-ola6","title":"Implement transaction retry logic for SQLITE_BUSY","description":"BEGIN IMMEDIATE fails immediately on SQLITE_BUSY instead of retrying with exponential backoff.\n\nLocation: internal/storage/sqlite/sqlite.go:223-225\n\nProblem:\n- Under concurrent write load, BEGIN IMMEDIATE can fail with SQLITE_BUSY\n- Current implementation fails immediately instead of retrying\n- Results in spurious failures under normal concurrent usage\n\nSolution: Implement exponential backoff retry:\n- Retry up to N times (e.g., 5)\n- Backoff: 10ms, 20ms, 40ms, 80ms, 160ms\n- Check for context cancellation between retries\n- Only retry on SQLITE_BUSY/database locked errors\n\nImpact: Spurious failures under concurrent write load\n\nEffort: 3 hours","status":"open","priority":1,"issue_type":"feature","created_at":"2025-11-16T14:51:31.247147-08:00","updated_at":"2025-11-16T14:51:31.247147-08:00"} -{"id":"bd-qqc.7","title":"Push release v{{version}} to remote","description":"Push the commit and tag:\n\n```bash\ngit push \u0026\u0026 git push --tags\n```\n\nVerify on GitHub that the tag appears in releases.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T13:00:26.933082-08:00","updated_at":"2025-12-18T23:34:18.630538-08:00","closed_at":"2025-12-18T22:41:41.882956-08:00","dependencies":[{"issue_id":"bd-qqc.7","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T13:00:26.933687-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.7","depends_on_id":"bd-qqc.6","type":"blocks","created_at":"2025-12-18T13:01:12.711161-08:00","created_by":"stevey"}]} -{"id":"bd-uqfn","title":"Work on beads-wkt: Output control parameters for MCP tool...","description":"Work on beads-wkt: Output control parameters for MCP tools (GH#622). Add brief, fields, max_description_length params to ready/list/show. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:57:10.675535-08:00","updated_at":"2025-12-20T00:49:51.929271-08:00","closed_at":"2025-12-19T23:28:25.362931-08:00"} -{"id":"bd-2oo.4","title":"Create migration script for edge field to dependency conversion","description":"Migration must:\n1. Read existing JSONL with old fields\n2. Convert field values to dependency records\n3. Write updated JSONL without old fields\n4. Handle edge cases (missing refs, duplicates)\n\nRun via: bd migrate or automatic on bd prime","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:01.760277-08:00","updated_at":"2025-12-18T02:49:10.602446-08:00","closed_at":"2025-12-18T02:49:10.602446-08:00","dependencies":[{"issue_id":"bd-2oo.4","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:01.760694-08:00","created_by":"daemon"}]} -{"id":"bd-sh4c","title":"Improve test coverage for cmd/bd/setup (28.4% ā†’ 50%)","description":"The setup package has only 28.4% test coverage. Setup commands are critical for first-time user experience.\n\nCurrent coverage: 28.4%\nTarget coverage: 50%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:04.409346-08:00","updated_at":"2025-12-13T21:01:18.98833-08:00"} -{"id":"bd-aydr.4","title":"Implement CLI command (cmd/bd/reset.go)","description":"Wire up the reset command with Cobra CLI.\n\n## Responsibilities\n- Define command and all flags\n- User confirmation prompt (unless --force)\n- Display impact summary before confirmation\n- Colored output and progress indicators\n- Call core reset package\n- Handle errors with user-friendly messages\n- Register command with rootCmd in init()\n\n## Flags\n```go\n--hard bool \"Also remove from git and commit\"\n--force bool \"Skip confirmation prompt\"\n--backup bool \"Create backup before reset\"\n--dry-run bool \"Preview what would happen\"\n--skip-init bool \"Do not re-initialize after reset\"\n--verbose bool \"Show detailed progress output\"\n```\n\n## Output Format\n```\nāš ļø This will reset beads to a clean state.\n\nWill be deleted:\n ā€¢ 47 issues (23 open, 24 closed)\n ā€¢ 12 tombstones\n\nContinue? [y/N] y\n\nā†’ Stopping daemons... āœ“\nā†’ Removing .beads/... āœ“\nā†’ Initializing fresh... āœ“\n\nāœ“ Reset complete. Run 'bd onboard' to set up hooks.\n```\n\n## Implementation Notes\n- Confirmation logic lives HERE, not in core package\n- Use color package (github.com/fatih/color) for output\n- Follow patterns from other commands (init.go, doctor.go)\n- Add to rootCmd in init() function\n\n## File Location\n`cmd/bd/reset.go`","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:54.318854+11:00","updated_at":"2025-12-13T10:13:32.611434+11:00","closed_at":"2025-12-13T09:59:41.72638+11:00","dependencies":[{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:54.319237+11:00","created_by":"daemon"},{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr.1","type":"blocks","created_at":"2025-12-13T08:45:09.762138+11:00","created_by":"daemon"},{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr.2","type":"blocks","created_at":"2025-12-13T08:45:09.817854+11:00","created_by":"daemon"},{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr.3","type":"blocks","created_at":"2025-12-13T08:45:09.883658+11:00","created_by":"daemon"}]} -{"id":"bd-28db","title":"Add 'bd status' command for issue database overview","description":"Implement a bd status command that provides a quick snapshot of the issue database state, similar to how git status shows working tree state.\n\nExpected output: Show summary including counts by state (open, in-progress, blocked, closed), recent activity (last 7 days), and quick overview without needing multiple queries.\n\nExample output showing issue counts, recent activity stats, and pointer to bd list for details.\n\nProposed options: --all (show all issues), --assigned (show issues assigned to current user), --json (JSON format output)\n\nUse cases: Quick project health check, onboarding for new contributors, integration with shell prompts or CI/CD, daily standup reference","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-02T17:25:59.203549-08:00","updated_at":"2025-11-02T17:25:59.203549-08:00"} -{"id":"bd-dqu8","title":"Restart running daemons","description":"Kill and restart any running bd daemons to pick up new version: pkill -f 'bd daemon' \u0026\u0026 bd daemon --start","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T00:32:26.559311-08:00","updated_at":"2025-12-20T00:32:59.123766-08:00","closed_at":"2025-12-20T00:32:59.123766-08:00","dependencies":[{"issue_id":"bd-dqu8","depends_on_id":"bd-fgw3","type":"blocks","created_at":"2025-12-20T00:32:39.427846-08:00","created_by":"daemon"},{"issue_id":"bd-dqu8","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-20T00:32:39.36213-08:00","created_by":"daemon"}]} -{"id":"bd-cb64c226.1","title":"Performance Validation","description":"Confirm no performance regression from cache removal","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T10:50:15.126019-07:00","updated_at":"2025-12-17T23:18:29.108883-08:00","deleted_at":"2025-12-17T23:18:29.108883-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-4q8","title":"bd cleanup --hard should skip tombstone creation for true permanent deletion","description":"## Problem\n\nWhen using bd cleanup --hard --older-than N --force, the command:\n1. Deletes closed issues older than N days (converting them to tombstones with NOW timestamp)\n2. Then tries to prune tombstones older than N days (finds none because they were just created)\n\nThis leaves the database bloated with fresh tombstones that will not be pruned.\n\n## Expected Behavior\n\nIn --hard mode, the deletion should be permanent without creating tombstones, since the user explicitly requested bypassing sync safety.\n\n## Workaround\n\nManually delete from database: sqlite3 .beads/beads.db 'DELETE FROM issues WHERE status=tombstone'\n\n## Fix Options\n\n1. In --hard mode, use a different delete path that does not create tombstones\n2. After deleting, immediately prune the just-created tombstones regardless of age\n3. Pass a skip_tombstone flag to the delete operation\n\nOption 1 is cleanest - --hard should mean permanent delete without tombstone.","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T01:33:36.580657-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-pbh.16","title":"Update Homebrew formula","description":"After GoReleaser completes, the Homebrew tap should be auto-updated.\n\nIf manual update needed:\n```bash\n./scripts/update-homebrew.sh v0.30.4\n```\n\nOr manually update steveyegge/homebrew-beads with new SHA256.\n\nVerify:\n```bash\nbrew update\nbrew info beads\n```\n","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.100213-08:00","updated_at":"2025-12-17T21:46:46.341942-08:00","closed_at":"2025-12-17T21:46:46.341942-08:00","dependencies":[{"issue_id":"bd-pbh.16","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.100541-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.16","depends_on_id":"bd-pbh.13","type":"blocks","created_at":"2025-12-17T21:19:11.312625-08:00","created_by":"daemon"}]} -{"id":"bd-aydr.5","title":"Enhance bd doctor to suggest reset for broken states","description":"Update bd doctor to detect severely broken states and suggest reset.\n\n## Detection Criteria\nSuggest reset when:\n- Multiple unfixable errors detected\n- Corrupted JSONL that can't be repaired\n- Schema version mismatch that can't be migrated\n- Daemon state inconsistent and unkillable\n\n## Implementation\nAdd to doctor's check/fix flow:\n```go\nif unfixableErrors \u003e threshold {\n suggest('State may be too broken to fix. Consider: bd reset')\n}\n```\n\n## Output Example\n```\nāœ— Found 5 unfixable errors\n \n Your beads state may be too corrupted to repair.\n Consider running 'bd reset' to start fresh.\n (Use 'bd reset --backup' to save current state first)\n```\n\n## Notes\n- Don't auto-run reset, just suggest\n- This is lower priority, can be done in parallel with main work","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-13T08:44:55.591986+11:00","updated_at":"2025-12-13T06:24:29.561624-08:00","closed_at":"2025-12-13T10:17:23.4522+11:00","dependencies":[{"issue_id":"bd-aydr.5","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:55.59239+11:00","created_by":"daemon"}]} -{"id":"bd-2oo.3","title":"Update all code to use dependencies API for edges","description":"Find and update all code that reads/writes:\n- replies_to field -\u003e use dependency API\n- relates_to field -\u003e use dependency API\n- duplicate_of field -\u003e use dependency API\n- superseded_by field -\u003e use dependency API\n\nCommands affected: bd mail, bd relate, bd duplicate, bd supersede, bd show, etc.","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:01.317006-08:00","updated_at":"2025-12-18T02:49:10.59233-08:00","closed_at":"2025-12-18T02:49:10.59233-08:00","dependencies":[{"issue_id":"bd-2oo.3","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:01.31856-08:00","created_by":"daemon"}]} -{"id":"bd-f3ll","title":"Merge: bd-ot0w","description":"branch: polecat/dementus\ntarget: main\nsource_issue: bd-ot0w\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:20:33.495772-08:00","updated_at":"2025-12-19T23:20:33.495772-08:00"} -{"id":"bd-x1xs","title":"Work on beads-1ra: Add molecules.jsonl as separate catalo...","description":"Work on beads-1ra: Add molecules.jsonl as separate catalog file for template molecules","status":"in_progress","priority":2,"issue_type":"task","created_at":"2025-12-19T20:17:44.840032-08:00","updated_at":"2025-12-19T20:17:44.905944-08:00"} -{"id":"bd-6fe4622f","title":"Remove unreachable utility functions","description":"Several small utility functions are unreachable:\n\nFiles to clean:\n1. `internal/storage/sqlite/hash.go` - `computeIssueContentHash` (line 17)\n - Check if entire file can be deleted if only contains this function\n\n2. `internal/config/config.go` - `FileUsed` (line 151)\n - Delete unused config helper\n\n3. `cmd/bd/git_sync_test.go` - `verifyIssueOpen` (line 300)\n - Delete dead test helper\n\n4. `internal/compact/haiku.go` - `HaikuClient.SummarizeTier2` (line 81)\n - Tier 2 summarization not implemented\n - Options: implement feature OR delete method\n\nImpact: Removes 50-100 LOC depending on decisions","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-28T16:20:02.434573-07:00","updated_at":"2025-12-17T22:58:34.563993-08:00","closed_at":"2025-12-17T22:58:34.563993-08:00"} -{"id":"bd-kwro.6","title":"Mail Commands: bd mail send/inbox/read/ack","description":"Implement core mail commands in cmd/bd/mail.go\n\nCommands:\n- bd mail send \u003crecipient\u003e -s 'Subject' -m 'Body' [--urgent]\n - Creates issue with type=message, sender=identity, assignee=recipient\n - --urgent sets priority=0\n \n- bd mail inbox [--from \u003csender\u003e] [--priority \u003cn\u003e]\n - Lists open messages where assignee=my identity\n - Sorted by priority, then date\n \n- bd mail read \u003cid\u003e\n - Shows full message content (subject, body, sender, timestamp)\n - Does NOT close (separate from ack)\n \n- bd mail ack \u003cid\u003e\n - Marks message as read by closing it\n - Can ack multiple: bd mail ack \u003cid1\u003e \u003cid2\u003e ...\n\nRequires: Identity configuration (bd-kwro.7)","status":"tombstone","issue_type":"task","created_at":"2025-12-16T03:02:12.103755-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-pbh.10","title":"Run check-versions.sh - all must pass","description":"Run the version consistency check:\n```bash\n./scripts/check-versions.sh\n```\n\nAll versions must match 0.30.4.\n\n\n```verify\n./scripts/check-versions.sh\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.047311-08:00","updated_at":"2025-12-17T21:46:46.28316-08:00","closed_at":"2025-12-17T21:46:46.28316-08:00","dependencies":[{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.7","type":"blocks","created_at":"2025-12-17T21:19:11.199955-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.047888-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.1","type":"blocks","created_at":"2025-12-17T21:19:11.159084-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.8","type":"blocks","created_at":"2025-12-17T21:19:11.211479-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.9","type":"blocks","created_at":"2025-12-17T21:19:11.224059-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.4","type":"blocks","created_at":"2025-12-17T21:19:11.168248-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.5","type":"blocks","created_at":"2025-12-17T21:19:11.177869-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.6","type":"blocks","created_at":"2025-12-17T21:19:11.187629-08:00","created_by":"daemon"}]} -{"id":"bd-0w5","title":"Fix update-hooks verification in version-bump.yaml","description":"The update-hooks task verification command at version-bump.yaml:358 always succeeds due to '|| echo ...' fallback. Remove the fallback so verification actually fails when hooks aren't installed.","status":"closed","priority":3,"issue_type":"bug","created_at":"2025-12-17T22:23:06.55467-08:00","updated_at":"2025-12-17T22:34:07.290409-08:00","closed_at":"2025-12-17T22:34:07.290409-08:00"} -{"id":"bd-kwro","title":"Beads Messaging \u0026 Knowledge Graph (v0.30.2)","description":"Add messaging semantics and extended graph links to Beads, enabling it to serve as\nthe universal substrate for knowledge work - issues, messages, documents, and threads\nas nodes in a queryable graph.\n\n## Motivation\n\nGas Town (GGT) needs inter-agent communication. Rather than a separate mail system,\ncollapse messaging into Beads - one system, one sync, one query interface, all in git.\n\nThis also positions Beads as a foundation for:\n- Company-wide issue tracking (like Notion)\n- Threaded conversations (like Reddit/Slack)\n- Knowledge graphs with loose associations\n- Arbitrary workflow UIs built on top\n\n## New Issue Type\n\n**message** - ephemeral communication between workers\n- sender: who sent it\n- assignee: recipient\n- priority: P0 (urgent) to P4 (routine)\n- status: open (unread) -\u003e closed (read)\n- ephemeral: true = can be bulk-deleted after swarm\n\n## New Graph Links\n\n**replies_to** - conversation threading\n- Messages reply to messages\n- Enables Reddit-style nested threads\n- Different from parent_id (not hierarchy, its conversation flow)\n\n**relates_to** - loose see also associations\n- Bidirectional knowledge graph edges\n- Not blocking, not hierarchical, just related\n- Enables discovery and traversal\n\n**duplicates** - deduplication at scale\n- Mark issue B as duplicate of canonical issue A\n- Close B, link to A\n- Essential for large issue databases\n\n**supersedes** - version chains\n- Design Doc v2 supersedes Design Doc v1\n- Track evolution of artifacts\n\n## New Fields (optional, any issue type)\n\n- sender (string) - who created this (for messages)\n- ephemeral (boolean) - can be bulk-deleted when closed\n\n## New Commands\n\nMessaging:\n- bd mail send \u003crecipient\u003e -s Subject -m Body\n- bd mail inbox (list open messages for me)\n- bd mail read \u003cid\u003e (show message content)\n- bd mail ack \u003cid\u003e (mark as read/close)\n- bd mail reply \u003cid\u003e -m Response (reply to thread)\n\nGraph links:\n- bd relate \u003cid1\u003e \u003cid2\u003e (create relates_to link)\n- bd duplicate \u003cid\u003e --of \u003ccanonical\u003e (mark as duplicate)\n- bd supersede \u003cid\u003e --with \u003cnew\u003e (mark superseded)\n\nCleanup:\n- bd cleanup --ephemeral (delete closed ephemeral issues)\n\n## Identity Configuration\n\nWorkers need identity for sender field:\n- BEADS_IDENTITY env var\n- Or .beads/config.json: identity field\n\n## Hooks (for GGT integration)\n\nBeads as platform - extensible without knowing about GGT.\nHook files in .beads/hooks/:\n- on_create (runs after bd create)\n- on_update (runs after bd update)\n- on_close (runs after bd close)\n- on_message (runs after bd mail send)\n\nGGT registers hooks to notify daemons of new messages.\n\n## Schema Changes (Migration Required)\n\nAdd to issue schema:\n- type: message (new valid type)\n- sender: string (optional)\n- ephemeral: boolean (optional)\n- replies_to: string (issue ID, optional)\n- relates_to: []string (issue IDs, optional)\n- duplicates: string (canonical issue ID, optional)\n- superseded_by: string (new issue ID, optional)\n\nMigration adds fields as optional - existing beads unchanged.\n\n## Success Criteria\n\n1. bd mail send/inbox/read/ack/reply work end-to-end\n2. replies_to creates proper thread structure\n3. relates_to, duplicates, supersedes links queryable\n4. Hooks fire on create/update/close/message\n5. Identity configurable via env or config\n6. Migration preserves all existing data\n7. All new features have tests","status":"tombstone","issue_type":"epic","created_at":"2025-12-16T03:00:53.912223-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"epic"} -{"id":"bd-o4qy","title":"Improve CheckStaleness error handling","description":"## Problem\n\nCheckStaleness returns 'false' (not stale) for multiple error conditions instead of returning errors. This masks problems.\n\n**Location:** internal/autoimport/autoimport.go:253-285\n\n## Edge Cases That Return False\n\n1. **Invalid last_import_time format** (line 259-262)\n2. **No JSONL file found** (line 267-277) \n3. **JSONL stat fails** (line 279-282)\n\n## Fix\n\nReturn errors for abnormal conditions:\n\n```go\nlastImportTime, err := time.Parse(time.RFC3339, lastImportStr)\nif err != nil {\n return false, fmt.Errorf(\"corrupted last_import_time: %w\", err)\n}\n\nif jsonlPath == \"\" {\n return false, fmt.Errorf(\"no JSONL file found\")\n}\n\nstat, err := os.Stat(jsonlPath)\nif err != nil {\n return false, fmt.Errorf(\"cannot stat JSONL: %w\", err)\n}\n```\n\n## Impact\nMedium - edge cases are rare but should be handled\n\n## Effort \n30 minutes - requires updating callers in RPC server","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-11-20T20:17:27.606219-05:00","updated_at":"2025-12-17T23:13:40.536905-08:00","closed_at":"2025-12-17T19:11:12.965289-08:00","dependencies":[{"issue_id":"bd-o4qy","depends_on_id":"bd-2q6d","type":"blocks","created_at":"2025-11-20T20:18:26.81065-05:00","created_by":"stevey"}]} -{"id":"bd-czss","title":"Update CHANGELOG.md with release notes","description":"Add meaningful release notes to CHANGELOG.md describing what changed in {{version}}","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:55:59.909641-08:00","updated_at":"2025-12-20T17:59:26.262153-08:00","closed_at":"2025-12-20T01:23:51.407302-08:00","dependencies":[{"issue_id":"bd-czss","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:14.862724-08:00","created_by":"daemon"},{"issue_id":"bd-czss","depends_on_id":"bd-qkw9","type":"blocks","created_at":"2025-12-19T22:56:23.145894-08:00","created_by":"daemon"}]} -{"id":"bd-4nqq","title":"Remove dead test code in info_test.go","description":"Code health review found cmd/bd/info_test.go has two tests permanently skipped:\n\n- TestInfoCommand\n- TestInfoCommandNoDaemon\n\nBoth skip with: 'Manual test - bd info command is working, see manual testing'\n\nThese are essentially dead code. Either automate them or remove them entirely.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:27.554019-08:00","updated_at":"2025-12-16T18:17:27.554019-08:00","dependencies":[{"issue_id":"bd-4nqq","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.381694-08:00","created_by":"daemon"}]} -{"id":"bd-usro","title":"Rename 'template instantiate' to 'mol bond'","description":"Rename the template instantiation command to match molecule metaphor.\n\nCurrent: bd template instantiate \u003cid\u003e --var key=value\nTarget: bd mol bond \u003cid\u003e --var key=value\n\nChanges needed:\n- Add 'mol' command group (or extend existing)\n- Add 'bond' subcommand that wraps template instantiate logic\n- Keep 'template instantiate' as deprecated alias for backward compat\n- Update help text and docs to use molecule terminology\n\nThe 'bond' verb captures:\n1. Chemistry metaphor (molecules bond to form structures)\n2. Dependency linking (child issues bonded in a DAG)\n3. Short and active\n\nSee also: molecule execution model in Gas Town","status":"open","priority":1,"issue_type":"feature","created_at":"2025-12-20T16:56:37.582795-08:00","updated_at":"2025-12-20T16:56:37.582795-08:00"} -{"id":"bd-si4g","title":"Verify release artifacts","description":"Check GitHub releases page - binaries for darwin/linux/windows should be available","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:04.183029-08:00","updated_at":"2025-12-20T00:49:51.92894-08:00","closed_at":"2025-12-20T00:25:52.720816-08:00","dependencies":[{"issue_id":"bd-si4g","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.173619-08:00","created_by":"daemon"},{"issue_id":"bd-si4g","depends_on_id":"bd-otli","type":"blocks","created_at":"2025-12-19T22:56:23.428507-08:00","created_by":"daemon"}]} -{"id":"bd-cb64c226.9","title":"Remove Cache-Related Tests","description":"Delete or update tests that assume multi-repo caching","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:44.511897-07:00","updated_at":"2025-12-17T23:18:29.110385-08:00","deleted_at":"2025-12-17T23:18:29.110385-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-6s61","title":"Version Bump: {{version}}","description":"Release checklist for version {{version}}. This molecule ensures all release steps are completed properly.","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-19T22:55:42.487701-08:00","updated_at":"2025-12-20T17:59:26.261233-08:00","closed_at":"2025-12-20T01:18:47.905306-08:00"} -{"id":"bd-bxha","title":"Default to YES for git hooks and merge driver installation","description":"Currently bd init prompts user to install git hooks and merge driver, but setup is incomplete if user declines. Change to install by default unless --skip-hooks or --skip-merge-driver flags are passed. Better safe defaults. If installation fails, warn user and suggest bd doctor --fix.","status":"open","priority":1,"issue_type":"feature","created_at":"2025-11-21T23:16:10.172238-08:00","updated_at":"2025-11-21T23:16:28.369137-08:00","dependencies":[{"issue_id":"bd-bxha","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:10.173034-08:00","created_by":"daemon"}]} -{"id":"bd-au0.5","title":"Add date and priority filters to bd search","description":"Add filter parity with bd list for consistent querying.\n\n**Missing filters to add:**\n- --priority, --priority-min, --priority-max\n- --created-after, --created-before\n- --updated-after, --updated-before\n- --closed-after, --closed-before\n- --empty-description, --no-assignee, --no-labels\n- --desc-contains, --notes-contains\n\n**Files to modify:**\n- cmd/bd/search.go\n- internal/rpc/protocol.go (SearchArgs)\n- internal/storage/storage.go (Search method)\n\n**Testing:**\n- All filter combinations\n- Date format parsing\n- Daemon and direct mode","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-21T21:07:05.496726-05:00","updated_at":"2025-11-21T21:07:05.496726-05:00","dependencies":[{"issue_id":"bd-au0.5","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:05.497762-05:00","created_by":"daemon"}]} -{"id":"bd-u0g9","title":"GH#405: Prefix parsing with hyphens treats first segment as prefix","description":"Prefix me-py-toolkit gets parsed as just me- when detecting mismatches. Fix prefix parsing to handle multi-hyphen prefixes. See GitHub issue #405.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:18.354066-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-hvng","title":"Merge: bd-w193","description":"branch: polecat/nux\ntarget: main\nsource_issue: bd-w193\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:23:47.496139-08:00","updated_at":"2025-12-19T23:23:47.496139-08:00"} -{"id":"bd-746","title":"Fix resolvePartialID stub in workflow.go","description":"The resolvePartialID function at workflow.go:921-925 is a stub that just returns the ID unchanged. Should use utils.ResolvePartialID for proper partial ID resolution in direct mode (non-daemon).","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-17T22:22:57.586917-08:00","updated_at":"2025-12-17T22:34:07.270168-08:00","closed_at":"2025-12-17T22:34:07.270168-08:00"} -{"id":"bd-4ec8","title":"Widespread double JSON encoding bug in daemon mode RPC calls","description":"Multiple CLI commands had the same double JSON encoding bug found in bd-1048. All commands that called ResolveID via RPC used string(resp.Data) instead of properly unmarshaling the JSON response. This caused IDs to retain JSON quotes (\"bd-1048\" instead of bd-1048), which then got double-encoded when passed to subsequent RPC calls.\n\nAffected commands:\n- bd show (3 instances)\n- bd dep add/remove/tree (5 instances)\n- bd label add/remove/list (3 instances)\n- bd reopen (1 instance)\n\nRoot cause: resp.Data is json.RawMessage (already JSON-encoded), so string() conversion preserves quotes.\n\nFix: Replace all string(resp.Data) with json.Unmarshal(resp.Data, \u0026id) for proper deserialization.\n\nAll commands now tested and working correctly with daemon mode.","status":"closed","issue_type":"bug","created_at":"2025-11-02T22:33:01.632691-08:00","updated_at":"2025-12-17T23:13:40.533631-08:00","closed_at":"2025-12-17T16:26:05.851197-08:00"} -{"id":"bd-fa2h","title":"šŸ¤ HANDOFF: v0.31.0 released, molecules discussion","description":"Session completed 0.31.0 release and had important molecules discussion.\n\n## Completed\n- v0.31.0 released (deferred status, audit trail, directory labels, etc.)\n- Fixed lint issues, hook version markers, codesigning\n- All CI green, artifacts verified\n\n## Filed Issues\n- bd-usro: Rename template instantiate ā†’ bd mol bond\n- bd-y8bj: Auto-detect identity for bd mail (P1 bug)\n- gt-975: Molecule execution support for polecats/crew\n- gt-976: Crew lifecycle support in Deacon\n\n## Key Insight\nMolecules are the future - TodoWrite is ephemeral, molecules are persistent institutional memory on the world chain. I tried to use TodoWrite for version bump and missed steps (codesigning, MCP verification). Molecules would have caught this.\n\n## Next Steps\n- bd mol bond implementation is priority\n- Max has gt-976 for crew lifecycle (enables automated refresh mid-molecule)\n\nCheck bd ready and gt-975/976 status.","status":"open","priority":2,"issue_type":"message","created_at":"2025-12-20T17:23:09.889562-08:00","updated_at":"2025-12-20T17:23:09.889562-08:00"} -{"id":"bd-4lm3","title":"Correction: Pinned field already in v0.31.0","description":"Quick correction - the Pinned field is already in the current bd v0.31.0:\n\n```go\n// In beads internal/types/types.go\nPinned bool `json:\"pinned,omitempty\"`\n```\n\nSo you just need to:\n1. Add `Pinned bool `json:\"pinned,omitempty\"`` to BeadsMessage in types.go\n2. Sort pinned messages first in listBeads() after fetching\n\nNo migration needed - the field is already there.\n\n-- Mayor","status":"open","priority":2,"issue_type":"message","created_at":"2025-12-20T17:52:27.321458-08:00","updated_at":"2025-12-20T17:52:27.321458-08:00"} -{"id":"bd-ziy5","title":"GH#409: bd init uses issues.jsonl but docs say beads.jsonl","description":"bd init creates config referencing issues.jsonl but README/docs reference beads.jsonl as canonical. Standardize naming. See GitHub issue #409.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:58.109954-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-svb5","title":"GH#505: Add bd reset/wipe command","description":"Add command to cleanly reset/wipe beads database. User reports painful manual process to start fresh. See GitHub issue #505.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:03:42.160966-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} -{"id":"bd-thgk","title":"Improve test coverage for internal/compact (18.2% ā†’ 70%)","description":"The compact package has only 18.2% test coverage. This is a core package handling issue compaction and should have at least 70% coverage.\n\nKey functions needing tests:\n- runCompactSingle (0%)\n- runCompactAll (0%)\n- runCompactRPC (0%)\n- runCompactStatsRPC (0%)\n- runCompactAnalyze (0%)\n- runCompactApply (0%)\n- pruneDeletionsManifest (0%)\n\nCurrent coverage: 18.2%\nTarget coverage: 70%","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-13T20:42:58.455767-08:00","updated_at":"2025-12-13T21:01:15.070551-08:00"} -{"id":"bd-77gm","title":"Import reports misleading '0 created, 0 updated' when actually importing all issues","description":"When running 'bd import' on a fresh database (no existing issues), the command reports 'Import complete: 0 created, 0 updated' even though it successfully imported all issues from the JSONL file.\n\n**Steps to reproduce:**\n1. Delete .beads/beads.db\n2. Run: bd import .beads/issues.jsonl\n3. Observe output: 'Import complete: 0 created, 0 updated'\n4. Run: bd list\n5. Confirm: All issues are actually present in the database\n\n**Expected behavior:**\nReport the actual number of issues imported, e.g., 'Import complete: 523 created, 0 updated'\n\n**Actual behavior:**\n'Import complete: 0 created, 0 updated' (misleading - makes user think import failed)\n\n**Impact:**\n- Users think import failed when it succeeded\n- Confusing during database sync operations (e.g., after git pull)\n- Makes debugging harder (can't tell if import actually worked)\n\n**Context:**\nDiscovered during VC session when syncing database after git pull. The misleading message caused confusion about whether the database was properly synced with the canonical JSONL file.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-11-09T16:20:13.191156-08:00","updated_at":"2025-11-09T16:20:13.191156-08:00"} -{"id":"bd-pgcs","title":"Clean up orphaned child issues (bd-cb64c226.*, bd-cbed9619.*)","description":"## Problem\n\nEvery bd command shows warnings about 12 orphaned child issues:\n- bd-cb64c226.1, .6, .8, .9, .10, .12, .13\n- bd-cbed9619.1, .2, .3, .4, .5\n\nThese are hierarchical IDs (parent.child format) where the parent issues no longer exist.\n\n## Impact\n\n- Clutters output of every bd command\n- Confusing for users\n- Indicates incomplete cleanup of deleted parent issues\n\n## Proposed Solution\n\n1. Delete the orphaned issues since their parents no longer exist:\n ```bash\n bd delete bd-cb64c226.1 bd-cb64c226.6 bd-cb64c226.8 ...\n ```\n\n2. Or convert them to top-level issues if they contain useful content\n\n## Investigation Needed\n\n- What were the parent issues bd-cb64c226 and bd-cbed9619?\n- Why were they deleted without their children?\n- Should bd delete cascade to children automatically?","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T23:06:17.240571-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-8pyn","title":"Version Bump: 0.30.7","description":"Release checklist for version 0.30.7. This molecule ensures all release steps are completed properly.","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-19T22:56:48.648694-08:00","updated_at":"2025-12-20T00:49:51.927518-08:00","closed_at":"2025-12-20T00:25:59.529183-08:00"} -{"id":"bd-y2v","title":"Refactor duplicate JSONL-from-git parsing code","description":"Both readFirstIssueFromGit() in init.go and importFromGit() in autoimport.go have similar code patterns for:\n1. Running git show \u003cref\u003e:\u003cpath\u003e\n2. Scanning the output with bufio.Scanner\n3. Parsing JSON lines\n\nCould be refactored to share a helper like:\n- readJSONLFromGit(gitRef, path string) ([]byte, error)\n- Or a streaming version: streamJSONLFromGit(gitRef, path string) (io.Reader, error)\n\nFiles:\n- cmd/bd/autoimport.go:225-256 (importFromGit)\n- cmd/bd/init.go:1212-1243 (readFirstIssueFromGit)\n\nPriority is low since code duplication is minimal and both functions work correctly.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-05T14:51:18.41124-08:00","updated_at":"2025-12-05T14:51:18.41124-08:00"} -{"id":"bd-r6a.4","title":"Add bd template list command","description":"Add a convenience command to list available templates:\n\nbd template list\n\nThis is equivalent to 'bd list --label=template' but more discoverable.\nCould also show variable placeholders found in each template.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T22:43:47.525316-08:00","updated_at":"2025-12-17T23:02:45.700582-08:00","closed_at":"2025-12-17T23:02:45.700582-08:00","dependencies":[{"issue_id":"bd-r6a.4","depends_on_id":"bd-r6a.2","type":"blocks","created_at":"2025-12-17T22:44:03.474353-08:00","created_by":"daemon"},{"issue_id":"bd-r6a.4","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:47.525743-08:00","created_by":"daemon"}]} -{"id":"bd-otli","title":"Wait for CI to pass","description":"Monitor GitHub Actions - all checks must pass before release artifacts are built","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:03.022281-08:00","updated_at":"2025-12-20T00:49:51.928591-08:00","closed_at":"2025-12-20T00:25:52.635223-08:00","dependencies":[{"issue_id":"bd-otli","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.097564-08:00","created_by":"daemon"},{"issue_id":"bd-otli","depends_on_id":"bd-7tuu","type":"blocks","created_at":"2025-12-19T22:56:23.360436-08:00","created_by":"daemon"}]} -{"id":"bd-r6a.3","title":"Create version-bump template as native Beads","description":"Migrate the version-bump workflow from YAML to a native Beads template:\n\n1. Create epic with template label: Release {{version}}\n2. Create child tasks for each step (update version files, changelog, commit, push, publish)\n3. Set up dependencies between tasks\n4. Add verification commands in task descriptions\n\nThis serves as both migration and validation of the new system.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T22:43:40.694931-08:00","updated_at":"2025-12-18T17:42:26.001149-08:00","closed_at":"2025-12-18T13:02:09.039457-08:00","dependencies":[{"issue_id":"bd-r6a.3","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:40.695392-08:00","created_by":"daemon"},{"issue_id":"bd-r6a.3","depends_on_id":"bd-r6a.2","type":"blocks","created_at":"2025-12-17T22:44:03.311902-08:00","created_by":"daemon"}]} -{"id":"bd-pbh.2","title":"Update CHANGELOG.md for 0.30.4","description":"1. Change `## [Unreleased]` to `## [0.30.4] - 2025-12-17`\n2. Add new empty `## [Unreleased]` section at top\n3. Ensure all changes since 0.30.3 are documented\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.956332-08:00","updated_at":"2025-12-17T21:46:46.214512-08:00","closed_at":"2025-12-17T21:46:46.214512-08:00","dependencies":[{"issue_id":"bd-pbh.2","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.95683-08:00","created_by":"daemon"}]} -{"id":"bd-aydr.1","title":"Implement core reset package (internal/reset)","description":"Create the core reset logic in internal/reset/ package.\n\n## Responsibilities\n- ResetOptions struct with all flag options\n- CountImpact() - count issues/tombstones that will be deleted\n- ValidateState() - check .beads/ exists, check git dirty state\n- ExecuteReset() - main reset logic (without CLI concerns)\n- Integrate with daemon killall\n\n## Interface Design\n```go\ntype ResetOptions struct {\n Hard bool // Include git operations (git rm, commit)\n Backup bool // Create backup before reset\n DryRun bool // Preview only, don't execute\n SkipInit bool // Don't re-initialize after reset\n}\n\ntype ResetResult struct {\n IssuesDeleted int\n TombstonesDeleted int\n BackupPath string // if backup was created\n DaemonsKilled int\n}\n\ntype ImpactSummary struct {\n IssueCount int\n OpenCount int\n ClosedCount int\n TombstoneCount int\n HasUncommitted bool // git dirty state\n}\n\nfunc Reset(opts ResetOptions) (*ResetResult, error)\nfunc CountImpact() (*ImpactSummary, error)\nfunc ValidateState() error\n```\n\n## IMPORTANT: CLI vs Core Separation\n- `Force` (skip confirmation) is NOT in ResetOptions - that's a CLI concern\n- Core always executes when called; CLI decides whether to prompt first\n- Keep CLI-agnostic: no prompts, no colored output, no user interaction\n- Return errors for CLI to handle with user-friendly messages\n- Unit testable in isolation\n\n## Dependencies\n- Uses daemon.KillAllDaemons() from internal/daemon/\n- Calls bd init logic after reset (unless SkipInit)","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:50.145364+11:00","updated_at":"2025-12-13T10:13:32.610253+11:00","closed_at":"2025-12-13T09:20:06.184893+11:00","dependencies":[{"issue_id":"bd-aydr.1","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:50.145775+11:00","created_by":"daemon"}]} -{"id":"bd-rgyd","title":"Split internal/storage/sqlite/queries.go (1586 lines)","description":"Code health review found queries.go is too large at 1586 lines with:\n\n- Issue scanning logic duplicated between transaction.go and queries.go\n- Timestamp defensive fixes duplicated in CreateIssue, CreateIssues, batch_ops.go\n- Multiple similar patterns that should be consolidated\n\nAlso: transaction.go at 1284 lines, dependencies.go at 893 lines\n\nRecommendation:\n1. Extract common scanning into shared function\n2. Consolidate timestamp defensive fixes\n3. Split queries.go by domain (CRUD, search, batch, events)","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-16T18:17:23.85869-08:00","updated_at":"2025-12-16T18:17:23.85869-08:00","dependencies":[{"issue_id":"bd-rgyd","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.062038-08:00","created_by":"daemon"}]} -{"id":"bd-tm2p","title":"Polecats get stuck on interactive shell prompts (cp/mv/rm -i)","description":"During swarm operations, polecats frequently get stuck waiting for interactive prompts from shell commands like:\n- cp prompting 'overwrite file? (y/n)'\n- mv prompting 'overwrite file? (y/n)' \n- rm prompting 'remove file?'\n\nThis happens because macOS aliases or shell configs may have -i flags set by default.\n\nRoot cause: Claude Code runs commands that trigger interactive confirmation prompts, but cannot respond to them, causing the agent to hang indefinitely.\n\nObserved in: Multiple polecats during GH issues swarm (Dec 2024)\n- Derrick, Roustabout, Prospector, Warboy all got stuck on y/n prompts\n\nSuggested fixes:\n1. AGENTS.md should instruct agents to always use -f flag with cp/mv/rm\n2. Polecat startup could set shell aliases to use non-interactive versions\n3. bd prime hook could include guidance about non-interactive commands\n4. Consider detecting stuck prompts and auto-recovering","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-14T16:51:24.572271-08:00","updated_at":"2025-12-17T23:13:40.536312-08:00","closed_at":"2025-12-17T19:13:04.074424-08:00"} -{"id":"bd-tbz3","title":"bd init UX Improvements","description":"bd init leaves users with incomplete setup, requiring manual bd doctor --fix. Issues found: (1) git hooks not installed if user declines prompt, (2) no auto-migration when CLI is upgraded, (3) stale merge driver configs from old versions. Fix by making bd init more robust with better defaults and auto-migration.","status":"open","priority":1,"issue_type":"epic","created_at":"2025-11-21T23:16:00.333543-08:00","updated_at":"2025-11-21T23:16:37.811233-08:00"} -{"id":"bd-5b6e","title":"Add tests for helper functions (GetDirtyIssueHash, GetAllDependencyRecords, export hashes)","description":"Several utility functions have 0% coverage:\n- GetDirtyIssueHash (dirty.go)\n- GetAllDependencyRecords (dependencies.go)\n- GetExportHash, SetExportHash, ClearAllExportHashes (hash.go)\n\nThese are lower priority but should have basic coverage.","status":"open","priority":4,"issue_type":"task","created_at":"2025-11-01T22:40:58.989976-07:00","updated_at":"2025-11-01T22:40:58.989976-07:00"} -{"id":"bd-r36u","title":"gt mq list shows empty when MRs exist","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-20T01:13:07.561256-08:00","updated_at":"2025-12-20T01:13:07.561256-08:00"} -{"id":"bd-kwro.7","title":"Identity Configuration","description":"Implement identity system for sender field.\n\nConfiguration sources (in priority order):\n1. --identity flag on commands\n2. BEADS_IDENTITY environment variable\n3. .beads/config.json: {\"identity\": \"worker-name\"}\n4. Default: git user.name or hostname\n\nNew config file support:\n- .beads/config.json for per-repo settings\n- identity field for messaging\n\nHelper function:\n- GetIdentity() string - resolves identity from sources\n\nUpdate bd mail send to use GetIdentity() for sender field.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:02:17.603608-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-qkw9","title":"Run bump-version.sh {{version}}","description":"Run ./scripts/bump-version.sh {{version}} to update version in all files","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:55:58.841424-08:00","updated_at":"2025-12-20T17:59:26.262877-08:00","closed_at":"2025-12-20T01:18:48.99813-08:00","dependencies":[{"issue_id":"bd-qkw9","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:14.786027-08:00","created_by":"daemon"}]} -{"id":"bd-pbh.8","title":"Update npm-package/package.json to 0.30.4","description":"Update version field in npm-package/package.json:\n```json\n\"version\": \"0.30.4\"\n```\n\n\n```verify\njq -e '.version == \"0.30.4\"' npm-package/package.json\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.014905-08:00","updated_at":"2025-12-17T21:46:46.268821-08:00","closed_at":"2025-12-17T21:46:46.268821-08:00","dependencies":[{"issue_id":"bd-pbh.8","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.01529-08:00","created_by":"daemon"}]} -{"id":"bd-pbh.13","title":"Monitor GoReleaser CI job","description":"Watch the GoReleaser action:\nhttps://github.com/steveyegge/beads/actions/workflows/release.yml\n\nShould complete in ~10 minutes and create:\n- GitHub Release with binaries for all platforms\n- Checksums and signatures\n\nCheck status:\n```bash\ngh run list --workflow=release.yml -L 1\ngh run watch # to monitor live\n```\n\nVerify release exists:\n```bash\ngh release view v0.30.4\n```\n\n\n```verify\ngh release view v0.30.4 --json tagName -q .tagName | grep -q 'v0.30.4'\n```","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.074476-08:00","updated_at":"2025-12-17T21:46:46.311506-08:00","closed_at":"2025-12-17T21:46:46.311506-08:00","dependencies":[{"issue_id":"bd-pbh.13","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.074833-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.13","depends_on_id":"bd-pbh.12","type":"blocks","created_at":"2025-12-17T21:19:11.279092-08:00","created_by":"daemon"}]} -{"id":"bd-dwh","title":"Implement or remove ExpectExit/ExpectStdout verification fields","description":"The Verification struct in internal/types/workflow.go has ExpectExit and ExpectStdout fields that are never used by workflowVerifyCmd. Either implement the functionality or remove the dead fields.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-17T22:23:02.708627-08:00","updated_at":"2025-12-17T22:34:07.300348-08:00","closed_at":"2025-12-17T22:34:07.300348-08:00"} -{"id":"bd-whgv","title":"Merge: bd-401h","description":"branch: polecat/rictus\ntarget: main\nsource_issue: bd-401h\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:20:37.854953-08:00","updated_at":"2025-12-19T23:20:37.854953-08:00"} -{"id":"bd-pbh.21","title":"Final release verification","description":"Verify all release artifacts are accessible:\n\n- [ ] `bd --version` shows 0.30.4\n- [ ] `bd version --daemon` shows 0.30.4\n- [ ] GitHub release exists: https://github.com/steveyegge/beads/releases/tag/v0.30.4\n- [ ] `brew upgrade beads \u0026\u0026 bd --version` shows 0.30.4 (if using Homebrew)\n- [ ] `pip show beads-mcp` shows 0.30.4\n- [ ] npm package available at 0.30.4\n- [ ] `bd info --whats-new` shows 0.30.4 notes\n\nRun final checks:\n```bash\nbd --version\nbd version --daemon\npip show beads-mcp | grep Version\nbd info --whats-new\n```\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.141249-08:00","updated_at":"2025-12-17T21:46:46.390985-08:00","closed_at":"2025-12-17T21:46:46.390985-08:00","dependencies":[{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.15","type":"blocks","created_at":"2025-12-17T21:19:11.389733-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.16","type":"blocks","created_at":"2025-12-17T21:19:11.398347-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.141549-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.18","type":"blocks","created_at":"2025-12-17T21:19:11.364839-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.19","type":"blocks","created_at":"2025-12-17T21:19:11.373656-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.20","type":"blocks","created_at":"2025-12-17T21:19:11.382-08:00","created_by":"daemon"}]} -{"id":"bd-3852","title":"Add orphan detection migration","description":"Create migration to detect orphaned children in existing databases. Query: SELECT id FROM issues WHERE id LIKE '%.%' AND substr(id, 1, instr(id || '.', '.') - 1) NOT IN (SELECT id FROM issues). Log results, let user decide action (delete orphans or convert to top-level).","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-04T12:32:30.727044-08:00","updated_at":"2025-11-04T12:32:30.727044-08:00"} -{"id":"bd-lfak","title":"bd preflight: PR readiness checks for contributors","description":"## Vision\n\nEncode project-specific institutional knowledge into executable checks. CONTRIBUTING.md is documentation that's read once and forgotten; `bd preflight` is documentation that runs at exactly the right moment.\n\n## Problem Statement\n\nContributors face a \"last mile\" problem - they do the work but stumble on project-specific gotchas at PR time:\n- Nix vendorHash gets stale when go.sum changes\n- Beads artifacts leak into PRs (see bd-umbf for namespace solution)\n- Version mismatches between version.go and default.nix\n- Tests/lint not run locally before pushing\n- Other project-specific checks that only surface when CI fails\n\nThese are too obscure to remember, exist in docs nobody reads end-to-end, and waste CI round-trips.\n\n## Why beads?\n\nBeads already has a foothold in the contributor workflow. It knows:\n- Git state (staged files, branch, dirty status)\n- Project structure\n- The specific issue being worked on\n- Project-specific configuration\n\n## Proposed Interface\n\n### Tier 1: Checklist Mode (v1)\n\n $ bd preflight\n PR Readiness Checklist:\n\n [ ] Tests pass: go test -short ./...\n [ ] Lint passes: golangci-lint run ./...\n [ ] No beads pollution: check .beads/issues.jsonl diff\n [ ] Nix hash current: go.sum unchanged or vendorHash updated\n [ ] Version sync: version.go matches default.nix\n\n Run 'bd preflight --check' to validate automatically.\n\n### Tier 2: Check Mode (v2)\n\n $ bd preflight --check\n āœ“ Tests pass\n āœ“ Lint passes\n āš  Beads pollution: 3 issues in diff - are these project issues or personal?\n āœ— Nix hash stale: go.sum changed, vendorHash needs update\n Fix: sha256-KRR6dXzsSw8OmEHGBEVDBOoIgfoZ2p0541T9ayjGHlI=\n āœ“ Version sync\n\n 1 error, 1 warning. Run 'bd preflight --fix' to auto-fix where possible.\n\n### Tier 3: Fix Mode (v3)\n\n $ bd preflight --fix\n āœ“ Updated vendorHash in default.nix\n āš  Cannot auto-fix beads pollution - manual review needed\n\n## Checks to Implement\n\n| Check | Description | Auto-fixable |\n|-------|-------------|--------------|\n| tests | Run go test -short ./... | No |\n| lint | Run golangci-lint | Partial (gofmt) |\n| beads-pollution | Detect personal issues in diff | No (see bd-umbf) |\n| nix-hash | Detect stale vendorHash | Yes (if nix available) |\n| version-sync | version.go matches default.nix | Yes |\n| no-debug | No TODO/FIXME/console.log | Warn only |\n| clean-stage | No unintended files staged | Warn only |\n\n## Future: Configuration\n\nMake checks configurable per-project via .beads/preflight.yaml:\n\n preflight:\n checks:\n - name: tests\n run: go test -short ./...\n required: true\n - name: no-secrets\n pattern: \"**/*.env\"\n staged: deny\n - name: custom-check\n run: ./scripts/validate.sh\n\nThis lets any project using beads define their own preflight checks.\n\n## Implementation Phases\n\n### Phase 1: Static Checklist\n- Implement bd preflight with hardcoded checklist for beads\n- No execution, just prints what to check\n- Update CONTRIBUTING.md to reference it\n\n### Phase 2: Automated Checks\n- Implement bd preflight --check\n- Run tests, lint, detect stale hashes\n- Clear pass/fail/warn output\n\n### Phase 3: Auto-fix\n- Implement bd preflight --fix\n- Fix vendorHash, version sync\n- Integrate with bd-umbf solution for pollution\n\n### Phase 4: Configuration\n- .beads/preflight.yaml support\n- Make it useful for other projects using beads\n- Plugin/hook system for custom checks\n\n## Dependencies\n\n- bd-umbf: Namespace isolation for beads pollution (blocking for full solution)\n\n## Success Metrics\n\n- Fewer CI failures on first PR push\n- Reduced \"fix nix hash\" commits\n- Contributors report preflight caught issues before CI","status":"open","priority":2,"issue_type":"epic","created_at":"2025-12-13T18:01:39.587078-08:00","updated_at":"2025-12-13T18:01:39.587078-08:00","dependencies":[{"issue_id":"bd-lfak","depends_on_id":"bd-umbf","type":"blocks","created_at":"2025-12-13T18:01:46.059901-08:00","created_by":"daemon"}]} -{"id":"bd-de6","title":"Fix FindBeadsDir to prioritize main repo .beads for worktrees","description":"The FindBeadsDir function should prioritize finding .beads in the main repository root when accessed from a worktree, rather than finding worktree-local .beads directories. This ensures proper sharing of the database across all worktrees.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-07T16:48:36.883117467-07:00","updated_at":"2025-12-07T16:48:36.883117467-07:00"} -{"id":"bd-ot0w","title":"Work on beads-tip: Fix broken Claude integration link in ...","description":"Work on beads-tip: Fix broken Claude integration link in bd doctor (GH#623). Update URL that doesn't exist. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:08.429157-08:00","updated_at":"2025-12-19T23:20:39.790305-08:00","closed_at":"2025-12-19T23:20:39.790305-08:00"} -{"id":"bd-4sfl","title":"Merge: bd-14ie","description":"branch: polecat/toast\ntarget: main\nsource_issue: bd-14ie\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:23:37.360782-08:00","updated_at":"2025-12-19T23:23:37.360782-08:00"} -{"id":"bd-rupw","title":"Run bump-version.sh 0.30.7","description":"Run ./scripts/bump-version.sh 0.30.7 to update version in all files","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649647-08:00","updated_at":"2025-12-19T22:57:31.512956-08:00","closed_at":"2025-12-19T22:57:31.512956-08:00","dependencies":[{"issue_id":"bd-rupw","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.653475-08:00","created_by":"stevey"}]} -{"id":"bd-qqc.2","title":"Add {{version}} to versionChanges in info.go","description":"Add new entry at the TOP of versionChanges array in cmd/bd/info.go:\n\n```go\n{\n Version: \"{{version}}\",\n Date: \"{{date}}\",\n Changes: []string{\n // Add notable changes here\n },\n},\n```\n\nCopy changes from CHANGELOG.md [Unreleased] section.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:27.032117-08:00","updated_at":"2025-12-18T23:34:18.631996-08:00","closed_at":"2025-12-18T22:41:41.836137-08:00","dependencies":[{"issue_id":"bd-qqc.2","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:27.032746-08:00","created_by":"stevey"}]} -{"id":"bd-8g8","title":"Fix G304 potential file inclusion in cmd/bd/tips.go:259","description":"Linting issue: G304: Potential file inclusion via variable (gosec) at cmd/bd/tips.go:259:18. Error: if data, err := os.ReadFile(settingsPath); err == nil {","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:34:57.189730843-07:00","updated_at":"2025-12-17T23:13:40.534569-08:00","closed_at":"2025-12-17T16:46:11.029837-08:00"} -{"id":"bd-9usz","title":"Test suite hangs/never finishes","description":"Running 'go test ./... -count=1' hangs indefinitely. The full test suite never completes, making it difficult to verify changes. Need to investigate which tests are hanging and fix or add timeouts.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-16T21:56:27.80191-08:00","updated_at":"2025-12-16T21:56:27.80191-08:00"} -{"id":"bd-cb64c226.12","title":"Remove Storage Cache from Server Struct","description":"Eliminate cache fields and use s.storage directly","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:25.474412-07:00","updated_at":"2025-12-17T23:18:29.111039-08:00","deleted_at":"2025-12-17T23:18:29.111039-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-gjla","title":"Test Thread","description":"Initial message for threading test","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:19:51.704324-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-gjla","depends_on_id":"bd-f5cc","type":"duplicates","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} -{"id":"bd-aay","title":"Warn on invalid depends_on references in workflow templates","description":"workflow.go:780-781 silently skips invalid dependency names. Should log a warning when a depends_on reference doesn't match any task ID in the template.","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T22:23:04.325253-08:00","updated_at":"2025-12-17T22:34:07.309495-08:00","closed_at":"2025-12-17T22:34:07.309495-08:00"} -{"id":"bd-kwro.1","title":"Schema: Add message type and new fields","description":"Add to internal/storage/sqlite/schema.go and models:\n\nNew issue_type value:\n- message\n\nNew optional fields on Issue struct:\n- Sender string (who sent this)\n- Ephemeral bool (can be bulk-deleted)\n- RepliesTo string (issue ID for threading)\n- RelatesTo []string (issue IDs for knowledge graph)\n- Duplicates string (canonical issue ID)\n- SupersededBy string (replacement issue ID)\n\nUpdate:\n- internal/storage/sqlite/schema.go - add columns\n- internal/models/issue.go - add fields to struct\n- internal/storage/sqlite/sqlite.go - CRUD operations\n- Create migration from v0.30.1\n\nEnsure backward compatibility - all new fields optional.","status":"tombstone","issue_type":"task","created_at":"2025-12-16T03:01:19.777604-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-pdr2","title":"Consider backwards compatibility for ready() and list() return type change","description":"PR #481 changed the return types of `ready()` and `list()` from `list[Issue]` to `list[IssueMinimal] | CompactedResult`. This is a breaking change for MCP clients.\n\n## Impact Assessment\nBreaking change affects:\n- Any MCP client expecting `list[Issue]` from ready()\n- Any MCP client expecting `list[Issue]` from list()\n- Client code that accesses full Issue fields (description, design, acceptance_criteria, timestamps, dependencies, dependents)\n\n## Current Behavior\n- ready() returns `list[IssueMinimal] | CompactedResult`\n- list() returns `list[IssueMinimal] | CompactedResult`\n- show() still returns full `Issue` (good)\n\n## Considerations\n**Pros of current approach:**\n- Forces clients to use show() for full details (good for context efficiency)\n- Simple mental model (always use show for full data)\n- Documentation warns about this\n\n**Cons:**\n- Clients expecting list[Issue] will break\n- No graceful degradation option\n- No migration period\n\n## Potential Solutions\n1. Add optional parameter `full_details=false` to ready/list (would increase payload)\n2. Create separate tools: ready_minimal/list_minimal + ready_full/list_full\n3. Accept breaking change and document upgrade path (current approach)\n4. Version the MCP server and document migration guide\n\n## Recommendation\nCurrent approach (solution 3) is reasonable if:\n- Changelog clearly documents the breaking change\n- Migration guide provided to clients\n- Error handling is graceful for clients expecting specific fields","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:24:56.460465-08:00","updated_at":"2025-12-14T14:24:56.460465-08:00","dependencies":[{"issue_id":"bd-pdr2","depends_on_id":"bd-otf4","type":"discovered-from","created_at":"2025-12-14T14:24:56.461959-08:00","created_by":"stevey"}]} -{"id":"bd-7b7h","title":"bd sync --merge fails due to chicken-and-egg: .beads/ always dirty","description":"## Problem\n\nWhen sync.branch is configured (e.g., beads-sync), the bd sync workflow creates a chicken-and-egg problem:\n\n1. `bd sync` commits changes to beads-sync via worktree\n2. `bd sync` copies JSONL to main working dir via `copyJSONLToMainRepo()` (sync.go line 364, worktree.go line 678-685)\n3. The copy is NOT committed to main - it just updates the working tree\n4. `bd sync --merge` checks for clean working dir (sync.go line 1547-1548)\n5. `bd sync --merge` FAILS because .beads/issues.jsonl is uncommitted!\n\n## Impact\n\n- sync.branch workflow is fundamentally broken\n- Users cannot periodically merge beads-sync ā†’ main\n- Main branch always shows as dirty\n- Creates confusion about git state\n\n## Root Cause\n\nsync.go:1547-1548:\n```go\nif len(strings.TrimSpace(string(statusOutput))) \u003e 0 {\n return fmt.Errorf(\"main branch has uncommitted changes, please commit or stash them first\")\n}\n```\n\nThis check blocks merge when ANY uncommitted changes exist, including the .beads/ changes that `bd sync` itself created.\n\n## Proposed Fix\n\nOption A: Exclude .beads/ from the clean check in `mergeSyncBranch`:\n```go\n// Check if there are non-beads uncommitted changes\nstatusCmd := exec.CommandContext(ctx, \"git\", \"status\", \"--porcelain\", \"--\", \":!.beads/\")\n```\n\nOption B: Auto-stash .beads/ changes before merge, restore after\n\nOption C: Change the workflow - do not copy JSONL to main working dir, instead always read from worktree\n\n## Files to Modify\n\n- cmd/bd/sync.go:1540-1549 (mergeSyncBranch function)\n- Possibly internal/syncbranch/worktree.go (copyJSONLToMainRepo)","notes":"## Fix Implemented\n\nModified cmd/bd/sync.go mergeSyncBranch function:\n\n1. **Exclude .beads/ from dirty check** (line 1543):\n Changed `git status --porcelain` to `git status --porcelain -- :!.beads/`\n This allows merge to proceed when only .beads/ has uncommitted changes.\n\n2. **Restore .beads/ to HEAD before merge** (lines 1553-1561):\n Added `git checkout HEAD -- .beads/` before merge to prevent\n \"Your local changes would be overwritten by merge\" errors.\n The .beads/ changes are redundant since they came FROM beads-sync.\n\n## Testing\n\n- All cmd/bd sync/merge tests pass\n- All internal/syncbranch tests pass\n- Manual verification needed for full workflow","status":"tombstone","issue_type":"bug","created_at":"2025-12-16T23:06:06.97703-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-qqc.1","title":"Update version to {{version}} in version.go","description":"Edit cmd/bd/version.go line 17:\n\n```go\nVersion = \"{{version}}\"\n```\n\nVerify with: `grep 'Version =' cmd/bd/version.go`","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:13.887087-08:00","updated_at":"2025-12-18T23:34:18.630067-08:00","closed_at":"2025-12-18T22:41:41.82664-08:00","dependencies":[{"issue_id":"bd-qqc.1","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:13.887655-08:00","created_by":"stevey"}]} -{"id":"bd-0d5p","title":"Fix TestRunSync_Timeout failing on macOS","description":"The hooks timeout test fails because exec.CommandContext doesn't properly terminate child processes of shell scripts on macOS. The test creates a hook that runs 'sleep 60' with a 500ms timeout, but it waits the full 60 seconds.\n\nOptions to fix:\n- Use SysProcAttr{Setpgid: true} to create process group and kill the group\n- Skip test on darwin with build tag\n- Use a different approach for timeout testing\n\nLocation: internal/hooks/hooks_test.go:220-253","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T20:52:51.771217-08:00","updated_at":"2025-12-17T23:13:40.532688-08:00","closed_at":"2025-12-17T17:23:55.678799-08:00"} -{"id":"bd-pbh","title":"Release v0.30.4","description":"## Version Bump Workflow\n\nCoordinating release from 0.30.3 to 0.30.4.\n\n### Components Updated\n- Go CLI (cmd/bd/version.go)\n- Claude Plugin (.claude-plugin/*.json)\n- MCP Server (integrations/beads-mcp/)\n- npm Package (npm-package/package.json)\n- Git hooks (cmd/bd/templates/hooks/)\n\n### Release Channels\n- GitHub Releases (GoReleaser)\n- PyPI (beads-mcp)\n- npm (@beads/cli)\n- Homebrew (homebrew-beads tap)\n","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-17T21:19:10.926133-08:00","updated_at":"2025-12-17T21:46:46.192948-08:00","closed_at":"2025-12-17T21:46:46.192948-08:00"} -{"id":"bd-c2xs","title":"Exclude pinned issues from bd blocked","description":"Update bd blocked to exclude pinned issues. Pinned issues are context markers and should not appear in the blocked work list.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:44.684242-08:00","updated_at":"2025-12-18T23:33:44.684242-08:00","dependencies":[{"issue_id":"bd-c2xs","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.521323-08:00","created_by":"daemon"},{"issue_id":"bd-c2xs","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.736681-08:00","created_by":"daemon"}]} -{"id":"bd-pbh.3","title":"Add 0.30.4 to info.go release notes","description":"Update cmd/bd/info.go versionChanges map with release notes for 0.30.4.\nInclude any workflow-impacting changes for --whats-new output.\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.966781-08:00","updated_at":"2025-12-17T21:46:46.222445-08:00","closed_at":"2025-12-17T21:46:46.222445-08:00","dependencies":[{"issue_id":"bd-pbh.3","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.967287-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.3","depends_on_id":"bd-pbh.2","type":"blocks","created_at":"2025-12-17T21:19:11.149584-08:00","created_by":"daemon"}]} -{"id":"bd-a0cp","title":"Consider using types.Status in merge package for type safety","description":"The merge package uses string for status comparison (e.g., result.Status == closed, issue.Status == StatusTombstone). The types package defines Status as a type alias with validation. While the merge package needs its own Issue struct for JSONL flexibility, it could import and use types.Status for constants to get compile-time type checking. Current code: if left == closed || right == closed. Could be: if left == string(types.StatusClosed). This is low priority since string comparison works correctly. Files: internal/merge/merge.go:44, 488, 501-521","status":"open","priority":4,"issue_type":"task","created_at":"2025-12-05T16:37:10.690424-08:00","updated_at":"2025-12-05T16:37:10.690424-08:00"} -{"id":"bd-elqd","title":"Systematic bd sync stability investigation","description":"## Context\n\nbd sync has chronic instability issues that have persisted since inception:\n- issues.jsonl is always dirty after push\n- bd sync often creates messes requiring manual cleanup\n- Problems escalating despite accumulated bug fixes\n- Workarounds are getting increasingly draconian\n\n## Goal\n\nSystematically observe and diagnose bd sync failures rather than applying band-aid fixes.\n\n## Approach\n\n1. Start fresh session with latest binary (all fixes applied)\n2. Run bd sync and carefully observe what happens\n3. Document exact sequence of events when things go wrong\n4. File specific issues for each discrete problem identified\n5. Track the root causes, not just symptoms\n\n## Test Environment\n\n- Fresh clone or clean state\n- Latest bd binary with all bug fixes\n- Monitor both local and remote JSONL state\n- Check for timing issues, race conditions, merge conflicts\n\n## Success Criteria\n\n- Identify root causes of sync instability\n- Create actionable issues for each problem\n- Eventually achieve stable bd sync (no manual intervention needed)","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T22:57:25.35289-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-pbh.20","title":"Update git hooks","description":"Install the updated hooks:\n```bash\nbd hooks install\n```\n\nVerify hook version:\n```bash\ngrep 'bd-hooks-version' .git/hooks/pre-commit\n```\n\n\n```verify\ngrep -q 'bd-hooks-version: 0.30.4' .git/hooks/pre-commit 2\u003e/dev/null || echo 'Hooks may not be installed - verify manually'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.13198-08:00","updated_at":"2025-12-17T21:46:46.381519-08:00","closed_at":"2025-12-17T21:46:46.381519-08:00","dependencies":[{"issue_id":"bd-pbh.20","depends_on_id":"bd-pbh.17","type":"blocks","created_at":"2025-12-17T21:19:11.352288-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.20","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.132306-08:00","created_by":"daemon"}]} -{"id":"bd-1tw","title":"Fix G104 errors unhandled in internal/storage/sqlite/queries.go:1186","description":"Linting issue: G104: Errors unhandled (gosec) at internal/storage/sqlite/queries.go:1186:2. Error: rows.Close()","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:13.051671889-07:00","updated_at":"2025-12-17T23:13:40.53486-08:00","closed_at":"2025-12-17T16:46:11.0289-08:00"} -{"id":"bd-ndye","title":"mergeDependencies uses union instead of 3-way merge","description":"## Critical Bug\n\nThe `mergeDependencies` function in internal/merge/merge.go performs a UNION of left and right dependencies instead of a proper 3-way merge. This causes removed dependencies to be resurrected.\n\n### Root Cause\n\n```go\n// Current code (lines 795-816):\nfunc mergeDependencies(left, right []Dependency) []Dependency {\n // Just unions left + right\n // NEVER REMOVES anything\n // Doesn't even look at base!\n}\n```\n\nAnd `mergeIssue` (line 579) doesn't pass `base`:\n```go\nresult.Dependencies = mergeDependencies(left.Dependencies, right.Dependencies)\n```\n\n### Impact\n\nIf:\n- Base has dependency D\n- Left removes D (intentional)\n- Right still has D (stale)\n\nCurrent: D is in result (resurrection!)\nCorrect: Left removed it, D should NOT be in result\n\nThis breaks Gas Town's workflow and data integrity. Closed means closed.\n\n### Fix\n\nChange `mergeDependencies` to take `base` and do proper 3-way merge:\n- If dep was in base and removed by left ā†’ exclude (left wins)\n- If dep was in base and removed by right ā†’ exclude (right wins)\n- If dep wasn't in base and added by either ā†’ include\n- If dep was in base and both still have it ā†’ include\n\nKey principle: **REMOVALS ARE AUTHORITATIVE**\n\n### Files to Change\n\n1. internal/merge/merge.go:\n - `mergeDependencies(left, right)` ā†’ `mergeDependencies(base, left, right)`\n - `mergeIssue` line 579: pass `base.Dependencies`\n\n### Related\n\nThis also explains why `ProtectLocalExportIDs` in importer is defined but never used - the protection was never actually implemented.","status":"closed","issue_type":"bug","created_at":"2025-12-18T23:15:54.475872-08:00","updated_at":"2025-12-18T23:21:10.709571-08:00","closed_at":"2025-12-18T23:21:10.709571-08:00"} -{"id":"bd-dhza","title":"Reduce global state in cmd/bd/main.go (25+ variables)","description":"Code health review found main.go has 25+ global variables (lines 57-112):\n\n- dbPath, actor, store, jsonOutput, daemonClient, noDaemon\n- rootCtx, rootCancel, autoFlushEnabled\n- isDirty (marked 'USED BY LEGACY CODE')\n- needsFullExport (marked 'USED BY LEGACY CODE')\n- flushTimer (marked 'DEPRECATED')\n- flushMutex, storeMutex, storeActive\n- flushFailureCount, lastFlushError, flushManager\n- skipFinalFlush, autoImportEnabled\n- versionUpgradeDetected, previousVersion, upgradeAcknowledged\n\nImpact:\n- Hard to test individual commands\n- Race conditions possible\n- State leakage between commands\n\nFix: Move toward dependency injection. Remove deprecated variables. Consider cmd/bd/internal package.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:29.643293-08:00","updated_at":"2025-12-16T18:17:29.643293-08:00","dependencies":[{"issue_id":"bd-dhza","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.492112-08:00","created_by":"daemon"}]} -{"id":"bd-r6a.5","title":"Update documentation for template system","description":"Update AGENTS.md and help text to document the new template system:\n\n- How to create a template (epic + template label + child issues)\n- How to define variables (just use {{name}} placeholders)\n- How to instantiate (bd template instantiate)\n- Migration from YAML workflows (if any users had custom ones)","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-17T22:43:55.461345-08:00","updated_at":"2025-12-18T17:42:26.001474-08:00","closed_at":"2025-12-18T13:46:53.446262-08:00","dependencies":[{"issue_id":"bd-r6a.5","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:55.461763-08:00","created_by":"daemon"},{"issue_id":"bd-r6a.5","depends_on_id":"bd-r6a.3","type":"blocks","created_at":"2025-12-17T22:44:03.632404-08:00","created_by":"daemon"},{"issue_id":"bd-r6a.5","depends_on_id":"bd-r6a.4","type":"blocks","created_at":"2025-12-17T22:44:03.788517-08:00","created_by":"daemon"}]} -{"id":"bd-pbh.11","title":"Commit changes and create v0.30.4 tag","description":"```bash\ngit add -A\ngit commit -m \"chore: Bump version to 0.30.4\"\ngit tag -a v0.30.4 -m \"Release v0.30.4\"\n```\n\n\n```verify\ngit describe --tags --exact-match HEAD 2\u003e/dev/null | grep -q 'v0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.056575-08:00","updated_at":"2025-12-17T21:46:46.292166-08:00","closed_at":"2025-12-17T21:46:46.292166-08:00","dependencies":[{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh.2","type":"blocks","created_at":"2025-12-17T21:19:11.245316-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh.3","type":"blocks","created_at":"2025-12-17T21:19:11.255362-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.056934-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh.10","type":"blocks","created_at":"2025-12-17T21:19:11.234175-08:00","created_by":"daemon"}]} -{"id":"bd-aydr.9","title":"Add .beads-backup-* pattern to gitignore template","description":"Update the gitignore template in doctor package to include backup directories.\n\n## Change\nAdd `.beads-backup-*/` to the GitignoreTemplate in `cmd/bd/doctor/gitignore.go`\n\n## Why\nBackup directories created by `bd reset --backup` should not be committed to git.\nThey are local-only recovery tools.\n\n## File\n`cmd/bd/doctor/gitignore.go` - look for GitignoreTemplate constant","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-13T08:49:42.453483+11:00","updated_at":"2025-12-13T09:16:44.201889+11:00","closed_at":"2025-12-13T09:16:44.201889+11:00","dependencies":[{"issue_id":"bd-aydr.9","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:49:42.453886+11:00","created_by":"daemon"}]} -{"id":"bd-tvu3","title":"Improve test coverage for internal/beads (48.1% ā†’ 70%)","description":"The beads package is a core package with 48.1% coverage. As the primary package for issue management, it should have at least 70% coverage.\n\nCurrent coverage: 48.1%\nTarget coverage: 70%","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-13T20:42:59.739142-08:00","updated_at":"2025-12-13T21:01:14.874359-08:00"} -{"id":"bd-n386","title":"Improve test coverage for internal/daemon (27.3% ā†’ 60%)","description":"The daemon package has only 27.3% test coverage. The daemon is critical for background operations and reliability.\n\nKey areas needing tests:\n- Daemon autostart logic\n- Socket handling\n- PID file management\n- Health checks\n\nCurrent coverage: 27.3%\nTarget coverage: 60%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:00.895238-08:00","updated_at":"2025-12-13T21:01:17.274438-08:00"} -{"id":"bd-lo4","title":"Test pinned issue","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-18T21:44:49.031385-08:00","updated_at":"2025-12-18T21:47:25.055109-08:00","deleted_at":"2025-12-18T21:47:25.055109-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-nuh1","title":"GH#403: bd doctor --fix circular error message","description":"bd doctor --fix suggests running bd doctor --fix for deletions manifest issue. Fix to provide actual resolution. See GitHub issue #403.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:16.290018-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-zc3","title":"Add --pinned and --no-pinned flags to bd list","description":"Add filtering flags to bd list: --pinned shows only pinned issues, --no-pinned excludes pinned issues. Default behavior shows all issues with a pin indicator.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:29.518028-08:00","updated_at":"2025-12-18T23:33:29.518028-08:00","dependencies":[{"issue_id":"bd-zc3","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.486361-08:00","created_by":"daemon"},{"issue_id":"bd-zc3","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.256764-08:00","created_by":"daemon"}]} -{"id":"bd-b3og","title":"Fix TestImportBugIntegration deadlock in importer_test.go","description":"Code health review found internal/importer/importer_test.go has TestImportBugIntegration skipped with:\n\nTODO: Test hangs due to database deadlock - needs investigation\n\nThis indicates a potential unresolved concurrency issue in the importer. The test has been skipped for an unknown duration.\n\nFix: Investigate the deadlock, fix the underlying issue, and re-enable the test.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T18:17:22.103838-08:00","updated_at":"2025-12-17T23:13:40.529671-08:00","closed_at":"2025-12-17T17:25:26.645901-08:00","dependencies":[{"issue_id":"bd-b3og","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.740642-08:00","created_by":"daemon"}]} -{"id":"bd-pbh.15","title":"Monitor npm publish","description":"Watch the npm publish action:\nhttps://github.com/steveyegge/beads/actions/workflows/npm-publish.yml\n\nVerify at: https://www.npmjs.com/package/@anthropics/claude-code-beads-plugin/v/0.30.4\n\nCheck:\n```bash\nnpm view @anthropics/claude-code-beads-plugin@0.30.4 version\n```\n\n\n```verify\nnpm view @anthropics/claude-code-beads-plugin@0.30.4 version 2\u003e/dev/null | grep -q '0.30.4'\n```","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.091806-08:00","updated_at":"2025-12-17T21:46:46.333213-08:00","closed_at":"2025-12-17T21:46:46.333213-08:00","dependencies":[{"issue_id":"bd-pbh.15","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.092205-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.15","depends_on_id":"bd-pbh.12","type":"blocks","created_at":"2025-12-17T21:19:11.301843-08:00","created_by":"daemon"}]} -{"id":"bd-io8c","title":"Improve test coverage for internal/syncbranch (33.0% ā†’ 70%)","description":"The syncbranch package has only 33.0% test coverage. This package handles git sync operations and is critical for data integrity.\n\nCurrent coverage: 33.0%\nTarget coverage: 70%","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-13T20:43:02.079145-08:00","updated_at":"2025-12-13T21:01:14.972533-08:00"} -{"id":"bd-2vh3","title":"Ephemeral issue cleanup and history compaction","description":"## Problem\n\nBeads history grows without bound. Every message, handoff, work assignment\nstays in issues.jsonl forever. Enterprise users will balk at \"git as database.\"\n\n## Solution: Two-Tier Cleanup\n\n### Tier 1: Ephemeral Cleanup (v1)\n\nbd cleanup --ephemeral --closed\n\n- Deletes closed issues where ephemeral=true from issues.jsonl\n- Safe: only removes explicitly marked ephemeral + closed\n- Preserves git history (commits still exist)\n- Run after swarm completion\n\n### Tier 2: History Compaction (v2)\n\nbd compact --squash\n\n- Rewrites issues.jsonl to remove tombstones\n- Optionally squashes git history (interactive rebase equivalent)\n- Preserves Merkle proofs for deleted items\n- Advanced: cold storage tiering\n\n## HOP Context\n\n| Layer | HOP Role | Persistence |\n|-------|----------|-------------|\n| Execution trace | None | Ephemeral |\n| Work scaffolding | None | Summarizable |\n| Work outcome | CV entry | Permanent |\n| Validation record | Stake proof | Permanent |\n\n\"Execution is ephemeral. Outcomes are permanent. You can't squash your CV.\"\n\n## Success Criteria\n\n- After cleanup --ephemeral: issues.jsonl only contains persistent work\n- Work outcomes preserved (CV entries)\n- Validation records preserved (stake proofs)\n- Execution scaffolding removed (transient coordination)","status":"open","priority":1,"issue_type":"feature","created_at":"2025-12-20T21:02:20.101367-08:00","updated_at":"2025-12-20T21:02:20.101367-08:00"} -{"id":"bd-g9eu","title":"Investigate TestRoutingIntegration failure","description":"TestRoutingIntegration/maintainer_with_SSH_remote failed during pre-commit check with \"expected role maintainer, got contributor\".\nThis occurred while running `go test -short ./...` on darwin/arm64.\nThe failure appears unrelated to storage/sqlite changes.\nNeed to investigate if this is a flaky test or environmental issue.","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-20T15:55:19.337094-08:00","updated_at":"2025-11-20T15:55:19.337094-08:00"} -{"id":"bd-qqc.13","title":"Upgrade beads-mcp to {{version}}","description":"Upgrade the MCP server via pip:\n\n```bash\npip install --upgrade beads-mcp\npip show beads-mcp | grep Version # Verify {{version}}\n```\n\nNote: Restart Claude Code or MCP session to use new version.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:08:04.318233-08:00","updated_at":"2025-12-18T23:09:05.77824-08:00","closed_at":"2025-12-18T23:09:05.77824-08:00","dependencies":[{"issue_id":"bd-qqc.13","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T23:08:04.318709-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.13","depends_on_id":"bd-qqc.11","type":"blocks","created_at":"2025-12-18T23:08:19.927825-08:00","created_by":"daemon"}]} -{"id":"bd-s0qf","title":"GH#405: Fix prefix parsing with hyphens - multi-hyphen prefixes parsed incorrectly","description":"Fixed: ExtractIssuePrefix was falling back to first-hyphen for word-like suffixes, breaking multi-hyphen prefixes like 'hacker-news' and 'me-py-toolkit'.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:13:56.951359-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-qqc.6","title":"Create git tag v{{version}}","description":"Create the release tag:\n\n```bash\ngit tag v{{version}}\n```\n\nVerify: `git tag | grep {{version}}`","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T13:00:15.495086-08:00","updated_at":"2025-12-18T23:34:18.632308-08:00","closed_at":"2025-12-18T22:41:41.874099-08:00","dependencies":[{"issue_id":"bd-qqc.6","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T13:00:15.496036-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.6","depends_on_id":"bd-qqc.5","type":"blocks","created_at":"2025-12-18T13:01:07.478315-08:00","created_by":"stevey"}]} -{"id":"bd-aec5439f","title":"Update LINTING.md with current baseline","description":"After cleanup, document the remaining acceptable baseline in LINTING.md so we can track regression.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-27T18:53:10.38679-07:00","updated_at":"2025-12-17T22:58:34.564854-08:00","closed_at":"2025-12-17T22:58:34.564854-08:00"} -{"id":"bd-sumr","title":"Merge: bd-t4sb","description":"branch: polecat/capable\ntarget: main\nsource_issue: bd-t4sb\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:22:21.343724-08:00","updated_at":"2025-12-19T23:22:21.343724-08:00"} -{"id":"bd-qqc.8","title":"Create and push git tag v{{version}}","description":"Create the release tag and push it:\n\n```bash\ngit tag v{{version}}\ngit push origin v{{version}}\n```\n\nThis triggers the GoReleaser GitHub Action to build release binaries.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:34.659927-08:00","updated_at":"2025-12-18T22:47:14.054232-08:00","closed_at":"2025-12-18T22:47:14.054232-08:00","dependencies":[{"issue_id":"bd-qqc.8","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:34.660248-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.8","depends_on_id":"bd-vgi5","type":"blocks","created_at":"2025-12-18T22:43:21.209529-08:00","created_by":"daemon"}]} -{"id":"bd-pbh.1","title":"Update cmd/bd/version.go to 0.30.4","description":"Update the Version constant in cmd/bd/version.go:\n```go\nVersion = \"0.30.4\"\n```\n\n\n```verify\ngrep -q 'Version = \"0.30.4\"' cmd/bd/version.go\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.9462-08:00","updated_at":"2025-12-17T21:46:46.20387-08:00","closed_at":"2025-12-17T21:46:46.20387-08:00","dependencies":[{"issue_id":"bd-pbh.1","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.946633-08:00","created_by":"daemon"}]} -{"id":"bd-aydr.7","title":"Add integration tests for bd reset command","description":"End-to-end integration tests for the reset command.\n\n## Test Scenarios\n\n### Basic reset\n1. Init beads, create some issues\n2. Run bd reset --force\n3. Verify .beads/ is fresh, issues gone\n\n### Hard reset\n1. Init beads, create issues, commit\n2. Run bd reset --hard --force \n3. Verify git history has reset commits\n\n### Backup functionality\n1. Init beads, create issues\n2. Run bd reset --backup --force\n3. Verify backup exists with correct contents\n4. Verify main .beads/ is reset\n\n### Dry run\n1. Init beads, create issues\n2. Run bd reset --dry-run\n3. Verify nothing changed\n\n### Confirmation prompt\n1. Init beads\n2. Run bd reset (no --force)\n3. Verify prompts for confirmation\n4. Test both y and n responses\n\n## Location\ntests/integration/reset_test.go or similar","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:58.479282+11:00","updated_at":"2025-12-13T06:24:29.561908-08:00","closed_at":"2025-12-13T10:15:59.221637+11:00","dependencies":[{"issue_id":"bd-aydr.7","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:58.479686+11:00","created_by":"daemon"},{"issue_id":"bd-aydr.7","depends_on_id":"bd-aydr.4","type":"blocks","created_at":"2025-12-13T08:45:11.15972+11:00","created_by":"daemon"}]} -{"id":"bd-uutv","title":"Work on beads-rs0: Namepool configuration for themed pole...","description":"Work on beads-rs0: Namepool configuration for themed polecat names. See bd show beads-rs0 for full details.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T21:49:48.129778-08:00","updated_at":"2025-12-19T21:59:25.565894-08:00","closed_at":"2025-12-19T21:59:25.565894-08:00"} +{"id":"bd-05a8","title":"Split large cmd/bd files: doctor.go (2948 lines), sync.go (2121 lines)","description":"Code health review found several oversized files:\n\n1. doctor.go - 2948 lines, 48 functions mixed together\n - Should split into doctor/checks/*.go for individual diagnostics\n - applyFixes() and previewFixes() are nearly identical\n\n2. sync.go - 2121 lines\n - ZFC (Zero Flush Check) logic embedded inline (lines 213-247)\n - Multiple mode handlers should be extracted\n\n3. init.go - 1732 lines\n4. compact.go - 1097 lines\n5. show.go - 1069 lines\n\nRecommendation: Extract into focused sub-packages or split into logical files.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-16T18:17:18.169927-08:00","updated_at":"2025-12-16T18:17:18.169927-08:00","dependencies":[{"issue_id":"bd-05a8","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.846503-08:00","created_by":"daemon","metadata":"{}"}]} {"id":"bd-06px","title":"bd sync --from-main fails: unknown flag --no-git-history","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-17T14:32:02.998106-08:00","updated_at":"2025-12-17T23:13:40.531756-08:00","closed_at":"2025-12-17T17:21:48.506039-08:00"} -{"id":"bd-401h","title":"Work on beads-7jl: Fix Windows installer file locking iss...","description":"Work on beads-7jl: Fix Windows installer file locking issue (GH#652). Close file handle before extraction in postinstall.js. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:57.873767-08:00","updated_at":"2025-12-19T23:20:05.747664-08:00","closed_at":"2025-12-19T23:20:05.747664-08:00"} -{"id":"bd-2q6d","title":"Beads commands operate on stale database without warning","description":"All beads read operations should validate database is in sync with JSONL before proceeding.\n\n**Current Behavior:**\n- Commands can query/read from stale database\n- Only mutation operations (like 'bd sync') check if JSONL is newer\n- User gets incorrect results without realizing database is out of sync\n\n**Expected Behavior:**\n- All beads commands should have pre-flight check for database freshness\n- If JSONL is newer than database, refuse to operate with error: \"Database out of sync. Run 'bd import' first.\"\n- Same safety check that exists for 'bd sync' should apply to ALL operations\n\n**Impact:**\n- Users make decisions based on incomplete/outdated data\n- Silent failures lead to confusion (e.g., thinking issues don't exist when they do)\n- Similar to running git commands on stale repo without being warned to pull\n\n**Example:**\n- Searched for bd-g9eu issue file: not found\n- Issue exists in .beads/issues.jsonl (in git)\n- Database was stale, but no warning was given\n- Led to incorrect conclusion that issue was already closed/deleted","notes":"## Implementation Complete\n\n**Phase 1: Created staleness check (cmd/bd/staleness.go)**\n- ensureDatabaseFresh() function checks JSONL mtime vs last_import_time\n- Returns error with helpful message when database is stale\n- Auto-skips in daemon mode (daemon has auto-import)\n\n**Phase 2: Added to all read commands**\n- list, show, ready, status, stale, info, duplicates, validate\n- Check runs before database queries in direct mode\n- Daemon mode already protected via checkAndAutoImportIfStale()\n\n**Phase 3: Code Review Findings**\nSee follow-up issues:\n- bd-XXXX: Add warning when staleness check errors\n- bd-YYYY: Improve CheckStaleness error handling\n- bd-ZZZZ: Refactor redundant daemon checks (low priority)\n\n**Testing:**\n- Build successful: go build ./cmd/bd\n- Binary works: ./bd --version\n- Ready for manual testing\n\n**Next Steps:**\n1. Test with stale database scenario\n2. Implement review improvements\n3. Close issue when tests pass","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-20T19:33:40.019297-05:00","updated_at":"2025-12-17T23:13:40.535149-08:00","closed_at":"2025-12-17T19:11:12.982639-08:00"} -{"id":"bd-siz1","title":"GH#532: bd sync circular error (suggests running bd sync)","description":"bd sync error message recommends running bd sync to fix the bd sync error. Fix error handling to provide useful guidance. See GitHub issue #532.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:04:00.543573-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-z8a6","title":"bd delete --from-file should add deleted issues to deletions manifest","description":"When using bd delete --from-file to bulk delete issues, the deleted issue IDs are not being added to the deletions.jsonl manifest.\n\nThis causes those issues to be resurrected during bd sync when git history scanning finds them in old commits.\n\nExpected: All deleted issues should be added to deletions.jsonl so they wont be reimported from git history.\n\nWorkaround: Manually add deletion records to deletions.jsonl.","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T01:48:14.099855-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-3ggb","title":"Rebuild local binary","description":"Build and verify: go build -o bd ./cmd/bd \u0026\u0026 ./bd version","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:03.101428-08:00","updated_at":"2025-12-18T22:46:40.955673-08:00","closed_at":"2025-12-18T22:46:40.955673-08:00","dependencies":[{"issue_id":"bd-3ggb","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.748289-08:00","created_by":"daemon"},{"issue_id":"bd-3ggb","depends_on_id":"bd-4y4g","type":"blocks","created_at":"2025-12-18T22:43:20.950376-08:00","created_by":"daemon"}]} -{"id":"bd-adoe","title":"Add --hard flag to bd cleanup to permanently cull tombstones before cutoff date","description":"Currently tombstones persist for 30 days before cleanup prunes them. Need an official way to force-cull tombstones earlier than the default TTL, for scenarios like cleaning house after extended absence where resurrection from old clones is not a concern. Proposed: bd cleanup --hard --older-than N to bypass the 30-day tombstone TTL.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:17:31.064914-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} -{"id":"bd-n777","title":"Timer beads for scheduled agent callbacks","description":"## Problem\n\nAgents frequently need to wait for external events (CI completion, PR reviews, artifact builds) but have no good mechanism:\n- `sleep N` blocks and is unreliable (often times out at 8+ minutes)\n- Polling wastes context and is easy to forget\n- No way to survive session restarts\n\n## Proposal: Timer Beads\n\nA new bead type or field that represents a scheduled callback:\n\n### Creating timers\n```bash\nbd timer create --in 30s --callback \"Check CI run 12345\" --issue bd-xyz\nbd timer create --at \"2025-12-20T08:00:00\" --callback \"Morning standup\"\nbd timer create --in 5m --on-expire \"tmux send-keys -t dave 'bd show bd-xyz'\"\n```\n\n### Timer storage\n- Store in beads (survives restarts)\n- Fields: `expires_at`, `callback_description`, `on_expire_command`, `linked_issue`\n- Status: pending, fired, cancelled\n\n### Deacon integration\nThe Deacon daemon monitors timer beads:\n1. Wakes on next timer expiry\n2. Executes `on_expire` command (e.g., tmux send-keys to interrupt agent)\n3. Marks timer as fired\n4. Optionally updates linked issue\n\n### Use cases\n- CI monitoring: \"ping me when build completes\"\n- PR reviews: \"check back in 1 hour\"\n- Scheduled tasks: \"remind me at EOD to sync\"\n- Blocking waits: agent registers callback instead of sleeping\n\n## Acceptance criteria\n- [ ] Timer bead type or field design\n- [ ] `bd timer create/list/cancel` commands\n- [ ] Deacon timer monitoring loop\n- [ ] tmux integration for agent interrupts\n- [ ] Survives daemon restarts","status":"open","priority":2,"issue_type":"feature","created_at":"2025-12-19T23:05:33.051861-08:00","updated_at":"2025-12-19T23:05:33.051861-08:00"} -{"id":"bd-o55a","title":"GH#509: bd doesn't find .beads when running from nested worktrees","description":"When worktrees are nested under main repo (.worktrees/feature/), bd stops at worktree git root instead of continuing to find .beads in parent. See GitHub issue #509 for detailed fix suggestion.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:20.281591-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-au0.7","title":"Audit and standardize JSON output across all commands","description":"Ensure consistent JSON format and error handling when --json flag is used.\n\n**Scope:**\n1. Verify all commands respect --json flag\n2. Standardize success response format\n3. Standardize error response format\n4. Document JSON schemas\n\n**Commands to audit:**\n- Core CRUD: create, update, delete, show, list, search āœ“\n- Queries: ready, blocked, stale, count, stats, status\n- Deps: dep add/remove/tree/cycles\n- Labels: label commands\n- Comments: comments add/list/delete\n- Epics: epic status/close-eligible\n- Export/import: already support --json āœ“\n\n**Testing:**\n- Success cases return valid JSON\n- Error cases return valid JSON (not plain text)\n- Consistent field naming (snake_case vs camelCase)\n- Array vs object wrapping consistency","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-21T21:07:35.304424-05:00","updated_at":"2025-11-21T21:07:35.304424-05:00","dependencies":[{"issue_id":"bd-au0.7","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:35.305663-05:00","created_by":"daemon"}]} -{"id":"bd-hlsw","title":"Add sync resilience guardrails for forced pushes and prefix mismatches","description":"Beads can get into unrecoverable sync states when remote forces pushes occur (e.g., rebases) combined with prefix mismatches from multi-worker scenarios. Add detection, prevention, and auto-recovery features to handle this gracefully.","status":"open","priority":2,"issue_type":"epic","created_at":"2025-12-14T10:40:14.872875259-07:00","updated_at":"2025-12-14T10:40:14.872875259-07:00"} -{"id":"bd-589x","title":"HANDOFF: Version 0.30.7 release in progress","description":"## Context\nDoing a 0.30.7 patch release with bug fixes.\n\n## What's done\n- Fixed #657: bd graph nil pointer crash (graph.go:102)\n- Fixed #652: Windows npm installer file lock (postinstall.js)\n- Updated CHANGELOG.md and info.go\n- Pushed to main, CI running (run 20390861825)\n- Created version-bump molecule template (bd-6s61) and instantiated for 0.30.7 (bd-8pyn)\n\n## In progress\nMolecule bd-8pyn has 3 remaining tasks:\n - bd-dxo7: Wait for CI to pass\n - bd-7l70: Verify release artifacts \n - bd-5c91: Update local installation\n\n## Check CI\n gh run list --repo steveyegge/beads --limit 1\n gh run view 20390861825 --repo steveyegge/beads\n\n## New feature filed\nbd-n777: Timer beads for scheduled agent callbacks\nDesign for Deacon-managed timers that can interrupt agents via tmux\n\n## Resume commands\n bd --no-daemon show bd-8pyn\n gh run list --repo steveyegge/beads --limit 1","status":"closed","priority":2,"issue_type":"message","created_at":"2025-12-19T23:06:14.902334-08:00","updated_at":"2025-12-20T00:49:51.927111-08:00","closed_at":"2025-12-20T00:25:59.596546-08:00"} -{"id":"bd-7h5","title":"Add pinned field to issue schema","description":"Add boolean 'pinned' field to the issue schema. When true, the issue is marked as a persistent context marker that should not be treated as a work item.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:26.767247-08:00","updated_at":"2025-12-19T00:08:59.854605-08:00","closed_at":"2025-12-19T00:08:59.854605-08:00","dependencies":[{"issue_id":"bd-7h5","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:55.98635-08:00","created_by":"daemon"}]} -{"id":"bd-8v2","title":"Add {{version}} to versionChanges in info.go","description":"Add new entry at TOP of versionChanges in cmd/bd/info.go with release notes from CHANGELOG.md. Must do before bump-version.sh --commit.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:00.482846-08:00","updated_at":"2025-12-18T22:45:21.465817-08:00","closed_at":"2025-12-18T22:45:21.465817-08:00","dependencies":[{"issue_id":"bd-8v2","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.496649-08:00","created_by":"daemon"},{"issue_id":"bd-8v2","depends_on_id":"bd-kyo","type":"blocks","created_at":"2025-12-18T22:43:20.69619-08:00","created_by":"daemon"}]} -{"id":"bd-fi05","title":"bd sync fails with orphaned issues and duplicate ID conflict","description":"After fixing the deleted_at TEXT column scanning bug (commit 18b1eb2), bd sync still fails with two issues:\n\n1. Orphan Detection Warning: 12 orphaned child issues whose parents no longer exist (bd-cb64c226.* and bd-cbed9619.*)\n\n2. Import Failure: UNIQUE constraint failed for bd-360 - this tombstone exists in both DB and JSONL\n\nError: \"Import failed: error creating depth-0 issues: bulk insert issues: failed to insert issue bd-360: sqlite3: constraint failed: UNIQUE constraint failed: issues.id\"\n\nFix options:\n- Delete orphaned child issues with bd delete\n- Resolve bd-360 duplicate (in deletions.jsonl vs tombstone in DB)\n- Reset sync branch: git branch -f beads-sync main \u0026\u0026 git push --force-with-lease origin beads-sync","notes":"Fixed tombstone constraint violation bug. When deleting closed issues, the CHECK constraint (status = 'closed') = (closed_at IS NOT NULL) was violated because CreateTombstone didn't clear closed_at. Fix: set closed_at = NULL in tombstone creation SQL.\n\nThe sync data corruption (orphaned issues in beads-sync branch) requires manual cleanup: reset sync branch with 'git branch -f beads-sync main \u0026\u0026 git push --force-with-lease origin beads-sync'","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-13T07:14:33.831346-08:00","updated_at":"2025-12-13T10:50:48.545465-08:00","closed_at":"2025-12-13T07:30:33.843986-08:00"} -{"id":"bd-kwro.11","title":"Documentation for messaging and graph links","description":"Document all new features.\n\nFiles to update:\n- README.md - brief mention of messaging capability\n- AGENTS.md - update for AI agents using bd mail\n- docs/messaging.md (new) - full messaging reference\n- docs/graph-links.md (new) - graph link reference\n- CHANGELOG.md - v0.30.2 release notes\n\nTopics to cover:\n- Mail commands with examples\n- Graph link types and use cases\n- Identity configuration\n- Hooks setup for notifications\n- Migration notes","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T03:02:39.548518-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-b6xo","title":"Remove or fix ClearDirtyIssues() - race condition risk (bd-52)","description":"Code health review found internal/storage/sqlite/dirty.go still exposes old ClearDirtyIssues() method (lines 103-108) which clears ALL dirty issues without checking what was actually exported.\n\nData loss risk: If export fails after some issues written to JSONL but before ClearDirtyIssues called, changes to remaining dirty issues will be lost.\n\nThe safer ClearDirtyIssuesByID() (lines 113-132) exists and clears only exported issues.\n\nFix: Either remove old method or mark it deprecated and ensure no code paths use it.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T18:17:20.534625-08:00","updated_at":"2025-12-17T23:13:40.530703-08:00","closed_at":"2025-12-17T18:59:18.693791-08:00","dependencies":[{"issue_id":"bd-b6xo","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.633738-08:00","created_by":"daemon"}]} -{"id":"bd-qqc.5","title":"Commit release v{{version}}","description":"Stage and commit the version bump:\n\n```bash\ngit add cmd/bd/version.go cmd/bd/info.go CHANGELOG.md\ngit commit -m \"release: v{{version}}\"\n```\n\nDo NOT push yet - tag first.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T13:00:04.097628-08:00","updated_at":"2025-12-18T23:34:18.630946-08:00","closed_at":"2025-12-18T22:41:41.864839-08:00","dependencies":[{"issue_id":"bd-qqc.5","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T13:00:04.098265-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.5","depends_on_id":"bd-qqc.4","type":"blocks","created_at":"2025-12-18T13:01:02.275008-08:00","created_by":"stevey"}]} -{"id":"bd-gocx","title":"Run bump-version.sh 0.32.1","description":"Execute ./scripts/bump-version.sh 0.32.1 to update all version references","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:18.470174-08:00","updated_at":"2025-12-20T21:54:54.500836-08:00","closed_at":"2025-12-20T21:54:54.500836-08:00","dependencies":[{"issue_id":"bd-gocx","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:18.471793-08:00","created_by":"daemon"},{"issue_id":"bd-gocx","depends_on_id":"bd-x3j8","type":"blocks","created_at":"2025-12-20T21:53:29.688436-08:00","created_by":"daemon"}]} -{"id":"bd-jgxi","title":"Auto-migrate database on CLI version bump","description":"When CLI is upgraded (e.g., 0.24.0 ā†’ 0.24.1), database version becomes stale. Add auto-migration in PersistentPreRun or daemon startup. Check dbVersion != CLIVersion and run bd migrate automatically. Fixes recurring UX issue where bd doctor shows version mismatch after every CLI upgrade.","status":"closed","issue_type":"feature","created_at":"2025-11-21T23:16:09.004619-08:00","updated_at":"2025-12-17T23:13:40.535453-08:00","closed_at":"2025-12-17T17:15:43.605762-08:00","dependencies":[{"issue_id":"bd-jgxi","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:09.005513-08:00","created_by":"daemon"}]} -{"id":"bd-au0.10","title":"Add global verbosity flags (--verbose, --quiet)","description":"Add consistent verbosity controls across all commands.\n\n**Current state:**\n- bd init has --quiet flag\n- No other commands have verbosity controls\n- Debug output controlled by BD_VERBOSE env var\n\n**Proposal:**\nAdd persistent flags:\n- --verbose / -v: Enable debug output\n- --quiet / -q: Suppress non-essential output\n\n**Implementation:**\n- Add to rootCmd.PersistentFlags()\n- Replace BD_VERBOSE checks with flag checks\n- Standardize output levels:\n * Quiet: Errors only\n * Normal: Errors + success messages\n * Verbose: Errors + success + debug info\n\n**Files to modify:**\n- cmd/bd/main.go (add flags)\n- internal/debug/debug.go (respect flags)\n- Update all commands to respect quiet mode\n\n**Testing:**\n- Verify --verbose shows debug output\n- Verify --quiet suppresses normal output\n- Ensure errors always show regardless of mode","status":"open","priority":3,"issue_type":"task","created_at":"2025-11-21T21:08:21.600209-05:00","updated_at":"2025-11-21T21:08:21.600209-05:00","dependencies":[{"issue_id":"bd-au0.10","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:08:21.602557-05:00","created_by":"daemon"}]} +{"id":"bd-077e","title":"Add close_reason field to CLI schema and documentation","description":"PR #551 persists close_reason, but the CLI documentation may not mention this field as part of the issue schema.\n\n## Current State\n- close_reason is now persisted in database\n- `bd show --json` will return close_reason in JSON output\n- Documentation may not reflect this new field\n\n## What's Missing\n- CLI reference documentation for close_reason field\n- Schema documentation showing close_reason is a top-level issue field\n- Example output showing close_reason in bd show --json\n- bd close command documentation should mention close_reason parameter is optional\n\n## Suggested Action\n1. Update README.md or CLI reference docs to list close_reason as an issue field\n2. Add example to bd close documentation\n3. Update any type definitions or schema specs\n4. Consider adding close_reason to verbose list output (bd list --verbose)","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-14T14:25:28.448654-08:00","updated_at":"2025-12-14T14:25:28.448654-08:00","dependencies":[{"issue_id":"bd-077e","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:28.449968-08:00","created_by":"stevey","metadata":"{}"}]} {"id":"bd-0a43","title":"Split monolithic sqlite.go into focused files","description":"internal/storage/sqlite/sqlite.go is 1050 lines containing initialization, 20+ CRUD methods, query building, and schema management.\n\nSplit into:\n- store.go: Store struct \u0026 initialization (150 lines)\n- bead_queries.go: Bead CRUD (300 lines)\n- work_queries.go: Work queries (200 lines) \n- stats_queries.go: Statistics (150 lines)\n- schema.go: Schema \u0026 migrations (150 lines)\n- helpers.go: Common utilities (100 lines)\n\nImpact: Impossible to understand at a glance; hard to find specific functionality; high cognitive load\n\nEffort: 6-8 hours","status":"closed","issue_type":"task","created_at":"2025-11-16T14:51:16.520465-08:00","updated_at":"2025-12-17T23:13:40.533947-08:00","closed_at":"2025-12-17T16:51:30.236012-08:00"} -{"id":"bd-abjw","title":"Consider consolidating config.yaml parsing into shared utility","description":"Multiple places parse config.yaml with custom structs:\n\n1. **autoimport.go:148** - `localConfig{SyncBranch}`\n2. **main.go:310** - strings.Contains for no-db (fragile, see bd-r6k2)\n3. **doctor.go:863** - strings.Contains for no-db (fragile, see bd-r6k2)\n4. **internal/config/config.go** - Uses viper (but caches at startup, problematic for tests)\n\nConsider creating a shared utility in `internal/configfile/` or extending the viper config:\n\n```go\n// internal/configfile/yaml.go\ntype YAMLConfig struct {\n SyncBranch string `yaml:\"sync-branch\"`\n NoDb bool `yaml:\"no-db\"`\n IssuePrefix string `yaml:\"issue-prefix\"`\n Author string `yaml:\"author\"`\n}\n\nfunc LoadYAML(beadsDir string) (*YAMLConfig, error) {\n // Parse config.yaml with proper YAML library\n}\n```\n\nBenefits:\n- Single source of truth for config.yaml structure\n- Proper YAML parsing everywhere\n- Easier to add new config fields\n\nTrade-off: May add complexity for simple one-off reads.","status":"open","priority":4,"issue_type":"task","created_at":"2025-12-07T02:03:26.067311-08:00","updated_at":"2025-12-07T02:03:26.067311-08:00"} -{"id":"bd-j3il","title":"Add bd reset command for clean slate restart","description":"Implement a command to reset beads to a clean starting state.\n\n**Context:** GitHub issue #479 - users sometimes get beads into an invalid state after updates, and there's no clean way to start fresh. The git backup/restore mechanism that protects against accidental deletion also makes it hard to intentionally reset.\n\n**Current workaround** (from maphew):\n```bash\nbd daemons killall\ngit rm .beads/*.jsonl\ngit commit -m 'remove old issues'\nrm .beads/*\nbd init\nbd onboard\n```\n\n**Desired:** A proper `bd reset` command that handles this cleanly and safely.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-13T08:41:34.956552+11:00","updated_at":"2025-12-13T08:43:49.970591+11:00","closed_at":"2025-12-13T08:43:49.970591+11:00"} -{"id":"bd-rgd7","title":"Update CHANGELOG.md with release notes","description":"Add release notes for 0.32.1: MCP output control params (#667), pin field fix","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:16.031879-08:00","updated_at":"2025-12-20T21:54:07.982164-08:00","closed_at":"2025-12-20T21:54:07.982164-08:00","dependencies":[{"issue_id":"bd-rgd7","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:16.034926-08:00","created_by":"daemon"}]} -{"id":"bd-kwro.8","title":"Hooks System","description":"Implement hook system for extensibility.\n\nHook directory: .beads/hooks/\nHook files (executable scripts):\n- on_create - runs after bd create\n- on_update - runs after bd update \n- on_close - runs after bd close\n- on_message - runs after bd mail send\n\nHook invocation:\n- Pass issue ID as first argument\n- Pass event type as second argument\n- Pass JSON issue data on stdin\n- Run asynchronously (dont block command)\n\nExample hook (GGT notification):\n #!/bin/bash\n gt notify --event=$2 --issue=$1\n\nThis allows GGT to register notification handlers without Beads knowing about GGT.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:02:23.086393-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-pbh.9","title":"Update hook templates to 0.30.4","description":"Update bd-hooks-version comment in all 4 hook templates:\n- cmd/bd/templates/hooks/pre-commit\n- cmd/bd/templates/hooks/post-merge\n- cmd/bd/templates/hooks/pre-push\n- cmd/bd/templates/hooks/post-checkout\n\nEach should have:\n```bash\n# bd-hooks-version: 0.30.4\n```\n\n\n```verify\ngrep -l 'bd-hooks-version: 0.30.4' cmd/bd/templates/hooks/* | wc -l | grep -q '4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.0248-08:00","updated_at":"2025-12-17T21:46:46.27561-08:00","closed_at":"2025-12-17T21:46:46.27561-08:00","dependencies":[{"issue_id":"bd-pbh.9","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.025124-08:00","created_by":"daemon"}]} -{"id":"bd-o9o","title":"Exclude pinned issues from bd ready","description":"Update bd ready to exclude pinned issues. Pinned issues are context markers, not work items, and should never appear in the ready-to-work list.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:41.979073-08:00","updated_at":"2025-12-18T23:33:41.979073-08:00","dependencies":[{"issue_id":"bd-o9o","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.392931-08:00","created_by":"daemon"},{"issue_id":"bd-o9o","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.612655-08:00","created_by":"daemon"}]} -{"id":"bd-kpy","title":"Sync race: rebase-based divergence recovery resurrects tombstones","description":"## Problem\nWhen two repos sync simultaneously, tombstones can be resurrected:\n\n1. Repo A deletes issue (creates tombstone), pushes to sync branch\n2. Repo B (with 'closed' status) exports and tries to push\n3. Push fails (non-fast-forward)\n4. fetchAndRebaseInWorktree does git rebase\n5. Git rebase applies B's 'closed' patch on top of A's 'tombstone'\n6. TEXT-level rebase doesn't invoke beads merge driver\n7. 'closed' overwrites 'tombstone' = resurrection\n\n## Root Cause\nCommitToSyncBranch uses git rebase for divergence recovery, but rebase is text-level, not content-level. The proper content-level merge in PullFromSyncBranch handles tombstones correctly, but it runs AFTER the problematic push.\n\n## Proposed Fix\nOption 1: Don't push in CommitToSyncBranch - let PullFromSyncBranch handle merge+push\nOption 2: Replace git rebase with content-level merge in fetchAndRebaseInWorktree\nOption 3: Reorder sync steps: Export ā†’ Pull/Merge ā†’ Commit ā†’ Push\n\n## Workaround Applied\nExcluded tombstones from orphan detection warnings (commit 1e97d9cc).\n\nSee also: bd-3852 (Add orphan detection migration)","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-17T23:29:33.049272-08:00","updated_at":"2025-12-17T23:29:33.049272-08:00"} -{"id":"bd-jvu","title":"Add bd update --parent flag to change issue parent","description":"Allow changing an issue's parent with bd update --parent \u003cnew-parent-id\u003e. Useful for reorganizing tasks under different epics or moving issues between hierarchies. Should update the parent-child dependency relationship.","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-17T22:24:07.274485-08:00","updated_at":"2025-12-17T22:34:07.318938-08:00","closed_at":"2025-12-17T22:34:07.318938-08:00"} -{"id":"bd-6pc","title":"Implement bd pin/unpin commands","description":"Add 'bd pin \u003cid\u003e' and 'bd unpin \u003cid\u003e' commands to toggle the pinned status of issues. Should support multiple IDs like other bd commands.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:28.292937-08:00","updated_at":"2025-12-19T17:43:35.713398-08:00","closed_at":"2025-12-19T00:35:31.612589-08:00","dependencies":[{"issue_id":"bd-6pc","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.119852-08:00","created_by":"daemon"},{"issue_id":"bd-6pc","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.352848-08:00","created_by":"daemon"}]} -{"id":"bd-14ie","title":"Work on beads-2vn: Add simple built-in beads viewer (GH#6...","description":"Work on beads-2vn: Add simple built-in beads viewer (GH#654). Add bd list --pretty with --watch flag, tree view with priority/status symbols. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:47.305831-08:00","updated_at":"2025-12-20T00:26:12.605897-08:00","closed_at":"2025-12-19T23:23:13.928323-08:00"} -{"id":"bd-0kai","title":"Work on beads-ocs: Thin shim hooks to eliminate version d...","description":"Work on beads-ocs: Thin shim hooks to eliminate version drift (GH#615). Replace full hook scripts with thin shims that call bd hooks run. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:57:22.91347-08:00","updated_at":"2025-12-20T00:49:51.926425-08:00","closed_at":"2025-12-19T23:24:08.828172-08:00"} -{"id":"bd-z86n","title":"Code Review: PR #551 - Persist close_reason to issues table","description":"Code review of PR #551 which fixes close_reason persistence bug.\n\n## Summary\nThe PR correctly fixes a bug where close_reason was only stored in the events table, not in the issues.close_reason column. This caused `bd show --json` to return empty close_reason.\n\n## What Was Fixed\n- āœ… CloseIssue now updates both close_reason and closed_at\n- āœ… ReOpenIssue clears both close_reason and closed_at\n- āœ… Comprehensive tests added for both storage and CLI layers\n- āœ… Clear documentation in queries.go about dual storage strategy\n\n## Quality Assessment\nāœ… Tests cover both storage layer and CLI JSON output\nāœ… Handles reopen case (clearing close_reason)\nāœ… Good comments explaining dual-storage design\nāœ… No known issues\n\n## Potential Followups\nSee linked issues for suggestions.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:06.887069-08:00","updated_at":"2025-12-14T14:25:06.887069-08:00"} -{"id":"bd-u0sb","title":"Merge: bd-uqfn","description":"branch: polecat/cheedo\ntarget: main\nsource_issue: bd-uqfn\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-20T01:11:52.033964-08:00","updated_at":"2025-12-20T01:11:52.033964-08:00"} -{"id":"bd-qioh","title":"Standardize error handling: replace direct fmt.Fprintf+os.Exit with FatalError","description":"Code health review found inconsistent error handling patterns:\n\nPattern A (preferred): FatalError() from errors.go:21-24\nPattern B (inconsistent): Direct fmt.Fprintf(os.Stderr) + os.Exit(1)\n\nAffected files:\n- delete.go:35-49 uses direct pattern\n- create.go:213 ignores error silently\n- Various other commands\n\nFix: Standardize on FatalError() wrapper for consistent error messages and testability.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-16T18:17:19.309394-08:00","updated_at":"2025-12-16T18:17:19.309394-08:00","dependencies":[{"issue_id":"bd-qioh","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.953559-08:00","created_by":"daemon"}]} -{"id":"bd-t4sb","title":"Work on beads-d8h: Fix prefix mismatch false positive wit...","description":"Work on beads-d8h: Fix prefix mismatch false positive with multi-hyphen prefixes like 'asianops-audit-' (GH#422). When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:19.545069-08:00","updated_at":"2025-12-20T00:26:12.606657-08:00","closed_at":"2025-12-19T23:21:45.471711-08:00"} -{"id":"bd-y4vz","title":"Work on beads-eub: Consolidated context tool for MCP serv...","description":"Work on beads-eub: Consolidated context tool for MCP server (GH#636). Merge set_context, where_am_i, init into single 'context' tool. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:58.527144-08:00","updated_at":"2025-12-20T00:49:51.929597-08:00","closed_at":"2025-12-19T23:31:11.906952-08:00"} -{"id":"bd-tggf","title":"Code Health Review Dec 2025: Technical Debt Cleanup","description":"Epic grouping technical debt identified in the Dec 16, 2025 code health review.\n\n## Overall Health Grade: B (Solid foundation, needs cleanup)\n\n### P1 (High Priority):\n- bd-74w1: Consolidate duplicate path-finding utilities\n- bd-b6xo: Remove/fix ClearDirtyIssues() race condition\n- bd-b3og: Fix TestImportBugIntegration deadlock\n\n### P2 (Medium Priority):\n- bd-05a8: Split large files (doctor.go, sync.go)\n- bd-qioh: Standardize error handling patterns\n- bd-rgyd: Split queries.go (1586 lines)\n- bd-9g1z: Fix/remove TestFindJSONLPathDefault\n\n### P3 (Low Priority):\n- bd-ork0: Add comments to 30+ ignored errors\n- bd-4nqq: Remove dead test code in info_test.go\n- bd-dhza: Reduce global state in main.go\n\n## Key Areas:\n1. Code duplication in path utilities\n2. Large monolithic files (5 files \u003e1000 lines)\n3. Global state (25+ variables, 3 deprecated)\n4. Silent error suppression (30+ instances)\n5. Test gaps and dead test code\n6. Atomicity risks in batch operations","status":"open","priority":2,"issue_type":"epic","created_at":"2025-12-16T18:18:58.115507-08:00","updated_at":"2025-12-16T18:21:50.561709-08:00"} -{"id":"bd-5qim","title":"Optimize GetReadyWork performance - 752ms on 10K database (target: \u003c50ms)","notes":"# Performance Analysis (10K Issue Database)\n\nAnalyzed using CPU profiles from benchmark suite on Apple M2 Pro.\n\n## Operation Performance\n\n| Operation | Time | Allocations | Memory |\n|----------------------------------|---------|-------------|--------|\n| bd ready (GetReadyWork) | ~752ms | 167,466 | 16MB |\n| bd list (SearchIssues no filter) | ~11.6ms | 89,214 | 5.8MB |\n| bd list (SearchIssues filtered) | ~9.2ms | 62,365 | 3.5MB |\n| bd create (CreateIssue) | ~2.6ms | 146 | 8.6KB |\n| bd update (UpdateIssue) | ~0.32ms | 364 | 15KB |\n| bd close (UpdateIssue) | ~0.32ms | 364 | 15KB |\n\n**Target: \u003c50ms for all operations on 10K database**\n\n**Current issue: GetReadyWork is 15x over target (752ms vs 50ms)**\n\n## Root Cause\n\nGetReadyWork (internal/storage/sqlite/ready.go:90-128) uses recursive CTE to propagate blocking:\n- 65x slower than SearchIssues\n- Recalculates entire blocked issue tree on every call\n- Algorithm:\n 1. Find directly blocked issues via 'blocks' dependencies\n 2. Recursively propagate blockage to descendants (max depth: 50)\n 3. Exclude all blocked issues from results\n\n## CPU Profile Analysis\n\n- Database syscalls (pthread_cond_signal, syscall6): ~75%\n- SQLite engine overhead: inherent to recursive CTE\n- Application code (query construction): \u003c1%\n\n**Bottleneck is the recursive CTE query execution, not application code.**\n\n## Optimization Recommendations\n\n### High Impact (Likely to achieve \u003c50ms target)\n\n1. **Cache blocked issue calculation**\n - Add `blocked_issues` table updated on dependency changes\n - Trade write complexity for read speed (ready called \u003e\u003e dependency changes)\n - Eliminates recursive CTE on every read\n\n2. **Add/verify database indexes**\n ```sql\n CREATE INDEX IF NOT EXISTS idx_dependencies_blocked \n ON dependencies(issue_id, type, depends_on_id);\n CREATE INDEX IF NOT EXISTS idx_issues_status \n ON issues(status);\n ```\n\n### Medium Impact\n\n3. **Reduce allocations** (167K allocations for GetReadyWork)\n - Profile `scanIssues()` for object pooling opportunities\n - Reuse slice capacity for repeated calls\n\n### Low Impact (Not recommended)\n- Query optimization for CRUD operations (already \u003c3ms)\n- Connection pooling tuning (not showing in profiles)\n\n## Verification\n\nRun benchmarks to validate optimization:\n```bash\nmake bench-quick\ngo tool pprof -http=:8080 internal/storage/sqlite/bench-cpu-*.prof\n```\n\nProfile files automatically generated in `internal/storage/sqlite/`.","status":"closed","issue_type":"bug","created_at":"2025-11-14T09:02:46.507526-08:00","updated_at":"2025-12-17T23:13:40.534258-08:00","closed_at":"2025-12-17T16:21:37.918868-08:00"} -{"id":"bd-3x9o","title":"Merge: bd-by0d","description":"branch: polecat/furiosa\ntarget: main\nsource_issue: bd-by0d\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:21:26.817906-08:00","updated_at":"2025-12-19T23:21:26.817906-08:00"} -{"id":"bd-kwro.5","title":"Graph Link: supersedes for version chains","description":"Implement supersedes link type for version tracking.\n\nNew command:\n- bd supersede \u003cid\u003e --with \u003cnew\u003e - marks id as superseded by new\n- Auto-closes the superseded issue\n\nQuery support:\n- bd show \u003cid\u003e shows 'Superseded by: \u003cnew\u003e'\n- bd show \u003cnew\u003e shows 'Supersedes: \u003cid\u003e'\n- bd list --superseded shows version chains\n\nStorage:\n- superseded_by column pointing to replacement issue\n\nUseful for design docs, specs, and evolving artifacts.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:41.749294-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-ykd9","title":"Add bd doctor --fix flag to automatically repair issues","description":"Implement a --fix flag for bd doctor that can automatically repair detected issues.\n\nRequirements:\n- Add --fix flag to bd doctor command\n- Show all fixable issues and prompt for confirmation before applying fixes\n- Organize fix implementations under doctor/fix/\u003ctype_of_fix\u003e.go\n- Each fix type should have its own file (e.g., doctor/fix/hooks.go, doctor/fix/sync.go)\n- Display what will be fixed and ask user to confirm (Y/n) before proceeding\n- Support fixing issues like:\n - Missing or broken git hooks\n - Sync problems with remote\n - File permission issues\n - Any other auto-repairable issues doctor detects\n\nImplementation notes:\n- Maintain separation between detection (existing doctor code) and repair (new fix code)\n- Each fix should be idempotent and safe to run multiple times\n- Provide clear output about what was fixed\n- Log any fixes that fail with actionable error messages","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-14T18:17:48.411264-08:00","updated_at":"2025-11-14T18:17:58.88609-08:00"} -{"id":"bd-vs9","title":"Fix unparam unused parameter in cmd/bd/doctor.go:541","description":"Linting issue: checkHooksQuick - path is unused (unparam) at cmd/bd/doctor.go:541:22. Error: func checkHooksQuick(path string) string {","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:17.02177046-07:00","updated_at":"2025-12-17T23:13:40.535743-08:00","closed_at":"2025-12-17T16:46:11.028332-08:00"} -{"id":"bd-d4jl","title":"Commit and push release","description":"git add -A \u0026\u0026 git commit -m 'chore: bump version to 0.32.1' \u0026\u0026 git push","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:21.928138-08:00","updated_at":"2025-12-20T21:57:12.81943-08:00","closed_at":"2025-12-20T21:57:12.81943-08:00","dependencies":[{"issue_id":"bd-d4jl","depends_on_id":"bd-tj00","type":"blocks","created_at":"2025-12-20T21:53:29.884457-08:00","created_by":"daemon"},{"issue_id":"bd-d4jl","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:21.930015-08:00","created_by":"daemon"}]} -{"id":"bd-1slh","title":"Investigate charmbracelet-based TUI for beads","description":"Now that we've merged the create-form command (PR #603) which uses charmbracelet/huh, investigate whether beads should have a more comprehensive TUI.\n\nConsiderations:\n- Should this be in core or a separate binary (bd-tui)?\n- What functionality would benefit from a TUI? (list view, issue details, search, bulk operations)\n- Plugin/extension architecture vs build tags vs separate binary\n- Dependency cost vs user experience tradeoff\n- Target audience: humans who want interactive workflows vs CLI/scripting users\n\nRelated: PR #603 added charmbracelet/huh dependency for create-form command.","status":"open","priority":3,"issue_type":"feature","created_at":"2025-12-17T14:20:51.503563-08:00","updated_at":"2025-12-17T14:20:51.503563-08:00"} -{"id":"bd-9g1z","title":"Fix or remove TestFindJSONLPathDefault (issue #356)","description":"Code health review found .test-skip permanently skips TestFindJSONLPathDefault.\n\nThe test references issue #356 about wrong JSONL filename expectations (issues.jsonl vs beads.jsonl).\n\nTest file: internal/beads/beads_test.go\n\nThe underlying migration from beads.jsonl to issues.jsonl may be complete, so either:\n1. Fix the test expectations\n2. Remove the test if no longer needed\n3. Document why it remains skipped","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-16T18:17:31.33975-08:00","updated_at":"2025-12-16T18:17:31.33975-08:00","dependencies":[{"issue_id":"bd-9g1z","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.169617-08:00","created_by":"daemon"}]} -{"id":"bd-dsdh","title":"Document sync.branch 'always dirty' working tree behavior","description":"## Context\n\nWhen sync.branch is configured, the .beads/issues.jsonl file in main's working tree is ALWAYS dirty. This is by design:\n\n1. bd sync commits to beads-sync branch (via worktree)\n2. bd sync copies JSONL to main's working tree (so CLI commands work)\n3. This copy is NOT committed to main (to reduce commit noise)\n\nContributors who watch main branch history pushed for sync.branch to avoid constant beads commit noise. But users need to understand the trade-off.\n\n## Documentation Needed\n\nUpdate README.md sync.branch section with:\n\n1. **Clear explanation** of why .beads/ is always dirty on main\n2. **\"Be Zen about it\"** - this is expected, not a bug\n3. **Workflow options:**\n - Accept dirty state, use `bd sync --merge` periodically to snapshot to main\n - Or disable sync.branch if clean working tree is more important\n4. **Shell alias tip** to hide beads from git status:\n ```bash\n alias gs='git status -- \":!.beads/\"'\n ```\n5. **When to merge**: releases, milestones, or periodic snapshots\n\n## Related\n\n- bd-7b7h: Fix that allows bd sync --merge to work with dirty .beads/\n- bd-elqd: Investigation that identified this as expected behavior","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T23:16:12.253559-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-qqc.12","title":"Restart daemon with {{version}}","description":"Restart the bd daemon to pick up new version:\n\n```bash\nbd daemon --stop\nbd daemon --start\nbd daemon --health # Verify Version: {{version}}\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:08:04.155448-08:00","updated_at":"2025-12-18T23:09:05.777375-08:00","closed_at":"2025-12-18T23:09:05.777375-08:00","dependencies":[{"issue_id":"bd-qqc.12","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T23:08:04.155832-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.12","depends_on_id":"bd-qqc.11","type":"blocks","created_at":"2025-12-18T23:08:19.779897-08:00","created_by":"daemon"}]} -{"id":"bd-tj00","title":"Update local installation","description":"go build -o ~/.local/bin/bd ./cmd/bd \u0026\u0026 codesign -s - ~/.local/bin/bd","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:20.616907-08:00","updated_at":"2025-12-20T21:55:42.756171-08:00","closed_at":"2025-12-20T21:55:42.756171-08:00","dependencies":[{"issue_id":"bd-tj00","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:20.619834-08:00","created_by":"daemon"},{"issue_id":"bd-tj00","depends_on_id":"bd-9l0h","type":"blocks","created_at":"2025-12-20T21:53:29.817989-08:00","created_by":"daemon"}]} -{"id":"bd-au0.8","title":"Improve clean vs cleanup command naming/documentation","description":"Clarify the difference between bd clean and bd cleanup to reduce user confusion.\n\n**Current state:**\n- bd clean: Remove temporary artifacts (.beads/bd.sock, logs, etc.)\n- bd cleanup: Delete old closed issues from database\n\n**Options:**\n1. Rename for clarity:\n - bd clean ā†’ bd clean-temp\n - bd cleanup ā†’ bd cleanup-issues\n \n2. Keep names but improve help text and documentation\n\n3. Add prominent warnings in help output\n\n**Preferred approach:** Option 2 (improve documentation)\n- Update short/long descriptions in commands\n- Add examples to help text\n- Update README.md\n- Add cross-references in help output\n\n**Files to modify:**\n- cmd/bd/clean.go\n- cmd/bd/cleanup.go\n- README.md or ADVANCED.md","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-21T21:07:49.960534-05:00","updated_at":"2025-11-21T21:07:49.960534-05:00","dependencies":[{"issue_id":"bd-au0.8","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:49.962743-05:00","created_by":"daemon"}]} -{"id":"bd-aydr.8","title":"Respond to GitHub issue #479 with solution","description":"Once bd reset is implemented and released, respond to GitHub issue #479.\n\n## Response should include\n- Announce the new bd reset command\n- Show basic usage examples\n- Link to any documentation\n- Thank the user for the feedback\n\n## Example response\n```\nThanks for raising this! We've added a `bd reset` command to handle this case.\n\nUsage:\n- `bd reset` - Reset to clean state (prompts for confirmation)\n- `bd reset --backup` - Create backup first\n- `bd reset --hard` - Also clean up git history\n\nThis is available in version X.Y.Z.\n```\n\n## Notes\n- Wait until feature is merged and released\n- Consider if issue should be closed or left for user confirmation","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-13T08:45:00.112351+11:00","updated_at":"2025-12-13T06:24:29.562177-08:00","closed_at":"2025-12-13T10:18:06.646796+11:00","dependencies":[{"issue_id":"bd-aydr.8","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:45:00.112732+11:00","created_by":"daemon"},{"issue_id":"bd-aydr.8","depends_on_id":"bd-aydr.7","type":"blocks","created_at":"2025-12-13T08:45:12.640243+11:00","created_by":"daemon"}]} -{"id":"bd-kwro.10","title":"Tests for messaging and graph links","description":"Comprehensive test coverage for all new features.\n\nTest files:\n- cmd/bd/mail_test.go - mail command tests\n- internal/storage/sqlite/graph_links_test.go - graph link tests\n- internal/hooks/hooks_test.go - hook execution tests\n\nTest cases:\n- Mail send/inbox/read/ack lifecycle\n- Thread creation and traversal (replies_to)\n- Bidirectional relates_to\n- Duplicate marking and queries\n- Supersedes chains\n- Ephemeral cleanup\n- Identity resolution priority\n- Hook execution (mock hooks)\n- Schema migration preserves data\n\nTarget: \u003e80% coverage on new code","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T03:02:34.050136-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-hy9p","title":"Add --body-file flag to bd create for reading descriptions from files","description":"## Problem\n\nCreating issues with long/complex descriptions via CLI requires shell escaping gymnastics:\n\n```bash\n# Current workaround - awkward heredoc quoting\nbd create --title=\"...\" --description=\"$(cat \u003c\u003c'EOF'\n...markdown...\nEOF\n)\"\n\n# Often fails with quote escaping errors in eval context\n# Agents resort to writing temp files then reading them\n```\n\n## Proposed Solution\n\nAdd `--body-file` and `--description-file` flags to read description from a file, matching `gh` CLI pattern.\n\n```bash\n# Natural pattern that aligns with training data\ncat \u003e /tmp/desc.md \u003c\u003c 'EOF'\n...markdown content...\nEOF\n\nbd create --title=\"...\" --body-file=/tmp/desc.md\n```\n\n## Implementation\n\n### 1. Add new flags to `bd create`\n\n```go\ncreateCmd.Flags().String(\"body-file\", \"\", \"Read description from file (use - for stdin)\")\ncreateCmd.Flags().String(\"description-file\", \"\", \"Alias for --body-file\")\n```\n\n### 2. Flag precedence\n\n- If `--body-file` or `--description-file` is provided, read from file\n- If value is `-`, read from stdin\n- Otherwise fall back to `--body` or `--description` flag\n- If neither provided, description is empty (current behavior)\n\n### 3. Error handling\n\n- File doesn't exist ā†’ clear error message\n- File not readable ā†’ clear error message\n- stdin specified but not available ā†’ clear error message\n\n## Benefits\n\nāœ… **Matches training data**: `gh issue create --body-file file.txt` is a common pattern\nāœ… **No shell escaping issues**: File content is read directly\nāœ… **Works with any content**: Markdown, special characters, quotes, etc.\nāœ… **Agent-friendly**: Agents already write complex content to temp files\nāœ… **User-friendly**: Easier for humans too when pasting long descriptions\n\n## Related Commands\n\nConsider adding similar support to:\n- `bd update --body-file` (for updating descriptions)\n- `bd comment --body-file` (if/when we add comments)\n\n## Examples\n\n```bash\n# From file\nbd create --title=\"Add new feature\" --body-file=feature.md\n\n# From stdin\necho \"Quick description\" | bd create --title=\"Bug fix\" --body-file=-\n\n# With other flags\nbd create \\\n --title=\"Security issue\" \\\n --type=bug \\\n --priority=0 \\\n --body-file=security-report.md \\\n --label=security\n```\n\n## Testing\n\n- Test with normal files\n- Test with stdin (`-`)\n- Test with non-existent files (error handling)\n- Test with binary files (should handle gracefully)\n- Test with empty files (valid - empty description)\n- Test that `--description-file` and `--body-file` are equivalent aliases","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-11-22T00:02:08.762684-08:00","updated_at":"2025-12-17T23:13:40.536024-08:00","closed_at":"2025-12-17T17:28:52.505239-08:00"} -{"id":"bd-6sm6","title":"Improve test coverage for internal/export (37.1% ā†’ 60%)","description":"The export package has only 37.1% test coverage. Export functionality needs good coverage to ensure data integrity.\n\nCurrent coverage: 37.1%\nTarget coverage: 60%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:06.802277-08:00","updated_at":"2025-12-13T21:01:19.08088-08:00"} -{"id":"bd-n4td","title":"Add warning when staleness check errors","description":"## Problem\n\nWhen ensureDatabaseFresh() calls CheckStaleness() and it errors (corrupted metadata, permission issues, etc.), we silently proceed with potentially stale data.\n\n**Location:** cmd/bd/staleness.go:27-32\n\n**Scenarios:**\n- Corrupted metadata table\n- Database locked by another process \n- Permission issues reading JSONL file\n- Invalid last_import_time format in DB\n\n## Current Code\n\n```go\nisStale, err := autoimport.CheckStaleness(ctx, store, dbPath)\nif err \\!= nil {\n // If we can't determine staleness, allow operation to proceed\n // (better to show potentially stale data than block user)\n return nil\n}\n```\n\n## Fix\n\n```go\nisStale, err := autoimport.CheckStaleness(ctx, store, dbPath)\nif err \\!= nil {\n fmt.Fprintf(os.Stderr, \"Warning: Could not verify database freshness: %v\\n\", err)\n fmt.Fprintf(os.Stderr, \"Proceeding anyway. Data may be stale.\\n\\n\")\n return nil\n}\n```\n\n## Impact\nMedium - users should know when staleness check fails\n\n## Effort\nEasy - 5 minutes","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-11-20T20:16:34.889997-05:00","updated_at":"2025-12-17T23:13:40.531031-08:00","closed_at":"2025-12-17T19:11:12.950618-08:00","dependencies":[{"issue_id":"bd-n4td","depends_on_id":"bd-2q6d","type":"blocks","created_at":"2025-11-20T20:18:20.154723-05:00","created_by":"stevey"}]} -{"id":"bd-379","title":"Implement `bd setup cursor` for Cursor IDE integration","description":"Create a `bd setup cursor` command that integrates Beads workflow into Cursor IDE via .cursorrules file. Unlike Claude Code (which has hooks), Cursor uses a static rules file to provide context to its AI.","status":"open","priority":3,"issue_type":"feature","created_at":"2025-11-11T23:32:22.170083-08:00","updated_at":"2025-11-11T23:32:22.170083-08:00"} -{"id":"bd-eyto","title":"Time-dependent tests may be flaky near TTL boundary","description":"Several tombstone merge tests use time.Now() to create test data: time.Now().Add(-24 * time.Hour), time.Now().Add(-60 * 24 * time.Hour), etc. While these work reliably in practice (24h vs 30d TTL has large margin), they could theoretically be flaky if: 1) Tests run slowly, 2) System clock changes during test, 3) TTL constants change. Recommendation: Consider using a fixed reference time or time injection for deterministic tests. Lower priority since current margin is large. Files: internal/merge/merge_test.go:1337-1338, 1352-1353, 1548-1549, 1590-1591","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-05T16:37:02.348143-08:00","updated_at":"2025-12-05T16:37:02.348143-08:00"} -{"id":"bd-kwro.9","title":"Cleanup: --ephemeral flag","description":"Update bd cleanup to handle ephemeral issues.\n\nNew flag:\n- bd cleanup --ephemeral - deletes all CLOSED issues with ephemeral=true\n\nBehavior:\n- Only deletes if status=closed AND ephemeral=true\n- Respects --dry-run flag\n- Reports count of deleted ephemeral issues\n\nThis allows swarm cleanup to remove transient messages without affecting permanent issues.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T03:02:28.563871-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-cbed9619.1","title":"Fix multi-round convergence for N-way collisions","description":"**Summary:** Multi-round collision resolution was identified as a critical issue preventing complete synchronization across distributed clones. The problem stemmed from incomplete final pulls that didn't fully propagate all changes between system instances.\n\n**Key Decisions:**\n- Implement multi-round sync mechanism\n- Ensure bounded convergence (ā‰¤N rounds)\n- Guarantee idempotent import without data loss\n\n**Resolution:** Developed a sync strategy that ensures all clones converge to the same complete set of issues, unblocking the bd-cbed9619 epic and improving distributed system reliability.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T21:22:21.486109-07:00","updated_at":"2025-12-17T23:18:29.111713-08:00","deleted_at":"2025-12-17T23:18:29.111713-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-ao0s","title":"bd graph crashes with --no-daemon on closed issues","description":"The `bd graph` command panics with nil pointer dereference when using `--no-daemon` flag on an issue with closed children.\n\n**Reproduction:**\n```bash\nbd graph bd-qqc --no-daemon\n# panic: runtime error: invalid memory address or nil pointer dereference\n# in main.computeDependencyCounts\n```\n\n**Stack trace:**\n```\npanic: runtime error: invalid memory address or nil pointer dereference\n[signal SIGSEGV: segmentation violation code=0x2 addr=0x20 pc=0x1010bdfb0]\n\ngoroutine 1 [running]:\nmain.computeDependencyCounts(...)\n /Users/stevey/gt/beads/crew/emma/cmd/bd/graph.go:428\nmain.renderGraph(0x1400033bb80, 0x0)\n /Users/stevey/gt/beads/crew/emma/cmd/bd/graph.go:307 +0x300\n```\n\n**Location:** cmd/bd/graph.go:428 - computeDependencyCounts() not handling nil case","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-18T22:57:36.972585-08:00","updated_at":"2025-12-20T18:12:46.798548-08:00","closed_at":"2025-12-20T18:12:46.798548-08:00"} -{"id":"bd-95k8","title":"Pinned field available in beads v0.37.0","description":"Hey max,\n\nHeads up on your mail overhaul work:\n\n1. **Pinned field is available** - beads v0.37.0 (released by dave earlier) includes the pinned field on issues. You'll want to add this to BeadsMessage in types.go.\n\n2. **Database migration** - Check if existing .beads databases need migration to support the pinned field. Run `bd doctor` to see if it flags anything.\n\n3. **Sorting task** - Once you have the pinned field, gt-ngu1 (pinned beads first in mail inbox) needs implementing. Since messages now come from `bd list --type=message`, you'll need to either:\n - Sort in listBeads() after fetching, or\n - Ensure bd list returns pinned items first (may already do this?)\n\nCheck what version of bd you're building against.\n\n-- Mayor","status":"open","priority":2,"issue_type":"message","created_at":"2025-12-20T17:51:57.315956-08:00","updated_at":"2025-12-20T17:51:57.315956-08:00"} -{"id":"bd-qqc.9","title":"Update Homebrew formula","description":"Update the Homebrew tap with new version:\n\n```bash\n./scripts/update-homebrew.sh {{version}}\n```\n\nThis script waits for GitHub Actions to complete (~5 min), then updates the formula with new SHA256 hashes.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:35.815096-08:00","updated_at":"2025-12-18T22:51:07.863862-08:00","closed_at":"2025-12-18T22:51:07.863862-08:00","dependencies":[{"issue_id":"bd-qqc.9","depends_on_id":"bd-qqc.8","type":"blocks","created_at":"2025-12-18T22:43:21.332955-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.9","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:35.816752-08:00","created_by":"daemon"}]} -{"id":"bd-hlsw.4","title":"Sync branch integrity guards","description":"Track sync branch parent commit. If sync branch was force-pushed, warn user and require confirmation before proceeding. Add option to reset to remote if user accepts rebase. Prevents silent corruption from forced pushes.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-14T10:40:20.645402352-07:00","updated_at":"2025-12-14T10:40:20.645402352-07:00","dependencies":[{"issue_id":"bd-hlsw.4","depends_on_id":"bd-hlsw","type":"parent-child","created_at":"2025-12-14T10:40:20.646425761-07:00","created_by":"daemon"}]} -{"id":"bd-lw0x","title":"Fix bd sync race condition with daemon causing dirty working directory","description":"After bd sync completes with sync.branch mode, subsequent bd commands or daemon file watcher would see a hash mismatch and trigger auto-import, which then schedules re-export, dirtying the working directory.\n\n**Root cause:**\n1. bd sync exports JSONL with NEW content (hash H1)\n2. bd sync updates jsonl_content_hash = H1 in DB\n3. bd sync restores JSONL from HEAD (OLD content, hash H0)\n4. Now: file hash = H0, DB hash = H1 (MISMATCH)\n5. Daemon or next CLI command sees mismatch, imports from OLD JSONL\n6. Import triggers re-export ā†’ file is dirty\n\n**Fix:**\nAfter restoreBeadsDirFromBranch(), update jsonl_content_hash to match the restored file's hash. This ensures daemon and CLI see file hash = DB hash ā†’ no spurious import/export cycle.\n\nRelated: bd-c83r (multiple daemon prevention)","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-13T06:42:17.130839-08:00","updated_at":"2025-12-13T06:43:33.329042-08:00","closed_at":"2025-12-13T06:43:33.329042-08:00"} -{"id":"bd-d148","title":"GH#483: Pre-commit hook fails unnecessarily when .beads removed","description":"Pre-commit hook fails on bd sync when .beads directory exists but user is on branch without beads. Should exit gracefully. See GitHub issue #483.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:40.049785-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-cb64c226.13","title":"Audit Current Cache Usage","description":"**Summary:** Comprehensive audit of storage cache usage revealed minimal dependency across server components, with most calls following a consistent pattern. Investigation confirmed cache was largely unnecessary in single-repository daemon architecture.\n\n**Key Decisions:** \n- Remove all cache-related environment variables\n- Delete server struct cache management fields\n- Eliminate cache-specific test files\n- Deprecate req.Cwd routing logic\n\n**Resolution:** Cache system will be completely removed, simplifying server storage access and reducing unnecessary complexity with negligible performance impact.","notes":"AUDIT COMPLETE\n\ngetStorageForRequest() callers: 17 production + 11 test\n- server_issues_epics.go: 8 calls\n- server_labels_deps_comments.go: 4 calls \n- server_export_import_auto.go: 2 calls\n- server_compact.go: 2 calls\n- server_routing_validation_diagnostics.go: 1 call\n- server_eviction_test.go: 11 calls (DELETE entire file)\n\nPattern everywhere: store, err := s.getStorageForRequest(req) ā†’ store := s.storage\n\nreq.Cwd usage: Only for multi-repo routing. Local daemon always serves 1 repo, so routing is unused.\n\nMCP server: Uses separate daemons per repo (no req.Cwd usage found). NOT affected by cache removal.\n\nCache env vars to deprecate:\n- BEADS_DAEMON_MAX_CACHE_SIZE (used in server_core.go:63)\n- BEADS_DAEMON_CACHE_TTL (used in server_core.go:72)\n- BEADS_DAEMON_MEMORY_THRESHOLD_MB (used in server_cache_storage.go:47)\n\nServer struct fields to remove:\n- storageCache, cacheMu, maxCacheSize, cacheTTL, cleanupTicker, cacheHits, cacheMisses\n\nTests to delete:\n- server_eviction_test.go (entire file - 9 tests)\n- limits_test.go cache assertions\n\nSpecial consideration: ValidateDatabase endpoint uses findDatabaseForCwd() outside cache. Verify if used, then remove or inline.\n\nSafe to proceed with removal - cache always had 1 entry in local daemon model.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:19.3723-07:00","updated_at":"2025-12-17T23:18:29.111369-08:00","deleted_at":"2025-12-17T23:18:29.111369-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-2ep8","title":"Update CHANGELOG.md with release notes","description":"Add meaningful release notes to CHANGELOG.md describing what changed in 0.30.7","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649053-08:00","updated_at":"2025-12-19T22:57:31.69559-08:00","closed_at":"2025-12-19T22:57:31.69559-08:00","dependencies":[{"issue_id":"bd-2ep8","depends_on_id":"bd-rupw","type":"blocks","created_at":"2025-12-19T22:56:48.651136-08:00","created_by":"stevey"},{"issue_id":"bd-2ep8","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.650816-08:00","created_by":"stevey"}]} -{"id":"bd-x3hi","title":"Support redirect files in .beads/ directory","description":"Gas Town creates polecat worktrees with .beads/redirect files that point to a shared beads database. The bd CLI should:\n\n1. When finding a .beads/ directory, check if it contains a 'redirect' file\n2. If redirect exists, read the relative path and use that as the beads directory\n3. This allows multiple git worktrees to share a single beads database\n\nExample:\n- polecats/alpha/.beads/redirect contains '../../mayor/rig/.beads'\n- bd commands from alpha should use mayor/rig/.beads\n\nCurrently bd ignores redirect files and either uses the local .beads/ or walks up to find a parent .beads/.\n\nRelated: gt-nriy (test message that can't be retrieved due to missing redirect support)","status":"open","priority":1,"issue_type":"feature","created_at":"2025-12-20T21:46:23.415172-08:00","updated_at":"2025-12-20T21:46:23.415172-08:00"} -{"id":"bd-iq7n","title":"Audit and fix JSONL filename mismatches across all repo clones","description":"## Problem\n\nMultiple clones of repos are configured with different JSONL filenames (issues.jsonl vs beads.jsonl), causing:\n1. JSONL files to be resurrected after deletion (one clone pushes issues.jsonl, another pushes beads.jsonl)\n2. Agents unable to see issues filed by other agents after sync\n3. Merge conflicts and data inconsistencies\n\n## Root Cause\n\nWhen repos were \"bd doctored\" or initialized at different times, some got issues.jsonl (old default) and others got beads.jsonl (Beads repo specific). These clones push their respective files, creating duplicates.\n\n## Task\n\nScan all repo clones under ~/src/ (1-2 levels deep) and standardize their JSONL configuration.\n\n### Step 1: Find all beads-enabled repos\n\n```bash\n# Find all directories named 'beads' at levels 1-2 under ~/src/\nfind ~/src -maxdepth 2 -type d -name beads\n```\n\n### Step 2: For each repo found, check configuration\n\nFor each directory from Step 1, check:\n- Does `.beads/metadata.json` exist?\n- What is the `jsonl_export` value?\n- What JSONL files actually exist in `.beads/`?\n- Are there multiple JSONL files (problem!)?\n\n### Step 3: Create audit report\n\nGenerate a report showing:\n```\nRepo Path | Config | Actual Files | Status\n----------------------------------- | ------------- | ---------------------- | --------\n~/src/beads | beads.jsonl | beads.jsonl | OK\n~/src/dave/beads | issues.jsonl | issues.jsonl | MISMATCH\n~/src/emma/beads | issues.jsonl | issues.jsonl, beads.jsonl | DUPLICATE!\n```\n\n### Step 4: Determine canonical name for each repo\n\nFor repos that are the SAME git repository (check `git remote -v`):\n- Group them together\n- Determine which JSONL filename should be canonical (majority wins, or beads.jsonl for the beads repo itself)\n- List which clones need to be updated\n\n### Step 5: Generate fix script\n\nCreate a script that for each mismatched clone:\n1. Updates `.beads/metadata.json` to use the canonical name\n2. If JSONL file needs renaming: `git mv .beads/old.jsonl .beads/new.jsonl`\n3. Removes any duplicate JSONL files: `git rm .beads/duplicate.jsonl`\n4. Commits the change\n5. Syncs: `bd sync`\n\n### Expected Output\n\n1. Audit report showing all repos and their config status\n2. List of repos grouped by git remote (same repository)\n3. Fix script or manual instructions for standardizing each repo\n4. Verification that after fixes, all clones of the same repo use the same JSONL filename\n\n### Edge Cases\n\n- Handle repos without metadata.json (use default discovery)\n- Handle repos with no git remote (standalone/local)\n- Handle repos that are not git repositories\n- Don't modify repos with uncommitted changes (warn instead)\n\n### Success Criteria\n\n- All clones of the same git repository use the same JSONL filename\n- No duplicate JSONL files in any repo\n- All configurations documented in metadata.json\n- bd doctor passes on all repos","status":"closed","issue_type":"task","created_at":"2025-11-21T23:58:35.044762-08:00","updated_at":"2025-12-17T23:13:40.531403-08:00","closed_at":"2025-12-17T16:50:59.510972-08:00"} -{"id":"bd-bwk2","title":"Centralize error handling patterns in storage layer","description":"80+ instances of inconsistent error handling across sqlite.go with mix of %w, %v, and no wrapping.\n\nLocation: internal/storage/sqlite/sqlite.go (throughout)\n\nProblem:\n- Some use fmt.Errorf(\"op failed: %w\", err) - correct wrapping\n- Some use fmt.Errorf(\"op failed: %v\", err) - loses error chain\n- Some return err directly - no context\n- Hard to debug production issues\n- Can't distinguish error types\n\nSolution: Create internal/storage/sqlite/errors.go:\n- Define sentinel errors (ErrNotFound, ErrInvalidID, etc.)\n- Create wrapDBError(op string, err error) helper\n- Convert sql.ErrNoRows to ErrNotFound\n- Always wrap with operation context\n\nImpact: Lost error context; inconsistent messages; hard to debug\n\nEffort: 5-7 hours","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-16T14:51:54.974909-08:00","updated_at":"2025-11-16T14:51:54.974909-08:00"} -{"id":"bd-581b80b3","title":"bd find-duplicates - AI-powered duplicate detection","description":"Find semantically duplicate issues.\n\nApproaches:\n1. Mechanical: Exact title/description matching\n2. Embeddings: Cosine similarity (cheap, scalable)\n3. AI: LLM-based semantic comparison (expensive, accurate)\n\nUses embeddings by default for \u003e100 issues.\n\nFiles: cmd/bd/find_duplicates.go (new)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-10-29T20:49:49.126801-07:00","updated_at":"2025-12-17T22:58:34.563511-08:00","closed_at":"2025-12-17T22:58:34.563511-08:00"} -{"id":"bd-x36g","title":"Thread Test 2","description":"Testing direct mode","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:16.470631-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} -{"id":"bd-fu83","title":"Fix daemon/direct mode inconsistency in relate and duplicate commands","description":"The relate.go and duplicate.go commands have inconsistent daemon/direct mode handling:\n\nWhen daemonClient is connected, they resolve IDs via RPC but then perform updates directly via store.UpdateIssue(), bypassing the daemon.\n\nAffected locations:\n- relate.go:125-139 (runRelate update)\n- relate.go:235-246 (runUnrelate update) \n- duplicate.go:120 (runDuplicate update)\n- duplicate.go:207 (runSupersede update)\n\nShould either use RPC for updates when daemon is running, or document why direct access is intentional.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-16T20:52:54.164189-08:00","updated_at":"2025-12-16T20:52:54.164189-08:00"} -{"id":"bd-hnkg","title":"GH#540: Add silent quick-capture mode (bd q)","description":"Add bd q alias for quick capture that outputs only issue ID. Useful for piping/scripting. See GitHub issue #540.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:03:38.260135-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} -{"id":"bd-mql4","title":"getLocalSyncBranch silently ignores YAML parse errors","description":"In autoimport.go:170-172, YAML parsing errors are silently ignored. If a user has malformed YAML in config.yaml, sync-branch will just silently be empty with no feedback.\n\nRecommendation: Add debug logging since this function is only called during auto-import, and debugging silent failures is painful.\n\nAdd: debug.Logf(\"Warning: failed to parse config.yaml: %v\", err)","status":"open","priority":4,"issue_type":"task","created_at":"2025-12-07T02:03:44.217728-08:00","updated_at":"2025-12-07T02:03:44.217728-08:00"} -{"id":"bd-7m16","title":"GH#519: bd sync fails when sync.branch is currently checked-out branch","description":"bd sync tries to create worktree for sync.branch even when already on that branch. Should commit directly instead. See GitHub issue #519.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:36.613211-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-05a8","title":"Split large cmd/bd files: doctor.go (2948 lines), sync.go (2121 lines)","description":"Code health review found several oversized files:\n\n1. doctor.go - 2948 lines, 48 functions mixed together\n - Should split into doctor/checks/*.go for individual diagnostics\n - applyFixes() and previewFixes() are nearly identical\n\n2. sync.go - 2121 lines\n - ZFC (Zero Flush Check) logic embedded inline (lines 213-247)\n - Multiple mode handlers should be extracted\n\n3. init.go - 1732 lines\n4. compact.go - 1097 lines\n5. show.go - 1069 lines\n\nRecommendation: Extract into focused sub-packages or split into logical files.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-16T18:17:18.169927-08:00","updated_at":"2025-12-16T18:17:18.169927-08:00","dependencies":[{"issue_id":"bd-05a8","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.846503-08:00","created_by":"daemon"}]} -{"id":"bd-hkr6","title":"GH#518: Document bd setup command","description":"bd setup is undiscoverable. Add to README/docs. Currently only findable by grepping source. See GitHub issue #518.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:54.664668-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-otf4","title":"Code Review: PR #481 - Context Engineering Optimizations","description":"Comprehensive code review of the merged context engineering PR (PR #481) that reduces MCP context usage by 80-90%.\n\n## Summary\nThe PR successfully implements lazy tool schema loading and minimal issue models to reduce context window usage. Overall implementation is solid and well-tested.\n\n## Positive Findings\nāœ… Well-designed models (IssueMinimal, CompactedResult)\nāœ… Comprehensive test coverage (28 tests, all passing)\nāœ… Clear documentation and comments\nāœ… Backward compatibility preserved (show() still returns full Issue)\nāœ… Sensible defaults (COMPACTION_THRESHOLD=20, PREVIEW_COUNT=5)\nāœ… Tool catalog complete with all 15 tools documented\n\n## Issues Identified\nSee linked issues for specific followup tasks.\n\n## Context Engineering Architecture\n- discover_tools(): List tool names only (~500 bytes vs ~15KB)\n- get_tool_info(name): Get specific tool details on-demand\n- IssueMinimal: Lightweight model for list views (~80 bytes vs ~400 bytes)\n- CompactedResult: Auto-compacts results with \u003e20 issues\n- _to_minimal(): Conversion function (efficient, no N+1 issues)","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:24:13.523532-08:00","updated_at":"2025-12-14T14:24:13.523532-08:00"} -{"id":"bd-rp4o","title":"Deleted issues resurrect during bd sync (tombstones not propagating)","description":"## Problem\n\nWhen issues are deleted with bd delete --force, they get deleted from the local DB but resurrect during the next bd sync.\n\n## Reproduction\n\n1. Observe orphan warnings (bd-cb64c226.*, bd-cbed9619.*)\n2. Delete them: bd delete bd-cb64c226.1 ... --force\n3. Run bd sync\n4. Orphan warnings reappear - issues were resurrected!\n\n## Root Cause Hypothesis\n\nThe sync branch workflow (beads-sync) has the old state before deletions. When bd sync pulls from beads-sync and copies JSONL to main, the deleted issues are re-imported.\n\nTombstones may not be properly:\n1. Written to beads-sync during export\n2. Propagated during pull/merge\n3. Honored during import\n\n## Related\n\n- bd-7b7h: chicken-and-egg sync.branch bug (same workflow)\n- bd-ncwo: ID-based fallback matching to prevent ghost resurrection\n\n## Files to Investigate\n\n- cmd/bd/sync.go (export/import flow)\n- internal/syncbranch/worktree.go (PullFromSyncBranch, copyJSONLToMainRepo)\n- internal/importer/ (tombstone handling)","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T23:09:43.072696-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-wc2","title":"Test body-file","description":"This is a test description from a file.\n\nIt has multiple lines.\n","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T17:27:20.508724-08:00","updated_at":"2025-12-17T17:28:33.83142-08:00","closed_at":"2025-12-17T17:28:33.83142-08:00"} -{"id":"bd-d73u","title":"Re: Thread Test 2","description":"Great! Thread is working well.","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:46.655093-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-d73u","depends_on_id":"bd-vpan","type":"replies-to","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} -{"id":"bd-au0.9","title":"Review and document rarely-used commands","description":"Document use cases or consider deprecation for infrequently-used commands.\n\n**Commands to review:**\n1. bd rename-prefix - How often is this used? Document use cases\n2. bd detect-pollution - Consider integrating into bd validate\n3. bd migrate-hash-ids - One-time migration, keep but document as legacy\n\n**For each command:**\n- Document typical use cases\n- Add examples to help text\n- Consider if it should be a subcommand instead\n- Add deprecation warning if appropriate\n\n**Not changing:**\n- duplicates āœ“ (useful for data quality)\n- repair-deps āœ“ (useful for fixing broken refs)\n- restore āœ“ (critical for compacted issues)\n- compact āœ“ (performance feature)\n\n**Deliverable:**\n- Updated help text\n- Documentation in ADVANCED.md\n- Deprecation plan if needed","status":"open","priority":3,"issue_type":"task","created_at":"2025-11-21T21:08:05.588275-05:00","updated_at":"2025-11-21T21:08:05.588275-05:00","dependencies":[{"issue_id":"bd-au0.9","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:08:05.59003-05:00","created_by":"daemon"}]} -{"id":"bd-6rl","title":"Merge3Way public API does not expose TTL parameter","description":"The public Merge3Way() function in merge.go does not allow callers to configure the tombstone TTL. It hard-codes the default via merge3WayWithTTL(). While merge3WayWithTTL() exists, it is unexported (lowercase). This means the CLI and tests cannot configure TTL at merge time. Use cases: testing with different TTL values, per-repository TTL configuration, debugging with short TTL, supporting --ttl flag in bd merge command (mentioned in design doc bd-zvg). Recommendation: Export Merge3WayWithTTL (rename to uppercase). Files: internal/merge/merge.go:77, 292-298","status":"open","priority":3,"issue_type":"feature","created_at":"2025-12-05T16:36:15.756814-08:00","updated_at":"2025-12-05T16:36:15.756814-08:00"} -{"id":"bd-47tn","title":"Add bd daemon --stop-all command to kill all daemon processes","description":"Currently there's no easy way to stop all running bd daemon processes. Users must resort to pkill -f 'bd daemon' or similar shell commands.\n\nAdd a --stop-all flag to bd daemon that:\n1. Finds all running bd daemon processes (not just the current repo's daemon)\n2. Gracefully stops them all\n3. Reports how many were stopped\n\nThis is useful when:\n- Multiple daemons are running and causing race conditions\n- User wants a clean slate before running bd sync\n- Debugging daemon-related issues","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-13T06:34:45.080633-08:00","updated_at":"2025-12-16T01:14:49.501989-08:00","closed_at":"2025-12-14T17:33:03.057089-08:00"} -{"id":"bd-2oo","title":"Edge Schema Consolidation: Unify all edges in dependencies table","description":"Consolidate all edge types into the dependency table per decision 004.\n\n## Changes\n- Add metadata column to dependencies table\n- Add thread_id column for conversation grouping\n- Remove redundant Issue fields: replies_to, relates_to, duplicate_of, superseded_by\n- Update all code to use dependencies API\n- Migration script for existing data\n- JSONL format change (breaking)\n\nReference: ~/gt/hop/decisions/004-edge-schema-consolidation.md","status":"closed","issue_type":"epic","created_at":"2025-12-18T02:01:48.785558-08:00","updated_at":"2025-12-18T02:49:10.61237-08:00","closed_at":"2025-12-18T02:49:10.61237-08:00"} -{"id":"bd-f5cc","title":"Thread Test","description":"Testing the thread feature","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:01.244501-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-f5cc","depends_on_id":"bd-x36g","type":"supersedes","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} -{"id":"bd-lsv4","title":"GH#444: Fix inconsistent status naming in_progress vs in-progress","description":"Documentation uses in-progress (hyphen) but code expects in_progress (underscore). Update all docs to use canonical in_progress. See GitHub issue #444.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:14.349425-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-8fgn","title":"test hash length","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T13:49:32.113843-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-pbh.12","title":"Push commit and tag to origin","description":"```bash\ngit push origin main\ngit push origin v0.30.4\n```\n\nThis triggers GitHub Actions:\n- GoReleaser build\n- PyPI publish\n- npm publish\n\n\n```verify\ngit ls-remote origin refs/tags/v0.30.4 | grep -q 'v0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.066074-08:00","updated_at":"2025-12-17T21:46:46.301948-08:00","closed_at":"2025-12-17T21:46:46.301948-08:00","dependencies":[{"issue_id":"bd-pbh.12","depends_on_id":"bd-pbh.11","type":"blocks","created_at":"2025-12-17T21:19:11.265986-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.12","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.066442-08:00","created_by":"daemon"}]} -{"id":"bd-cb64c226.10","title":"Delete server_cache_storage.go","description":"Remove the entire cache implementation file (~286 lines)","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:38.729299-07:00","updated_at":"2025-12-17T23:18:29.110716-08:00","deleted_at":"2025-12-17T23:18:29.110716-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-cbed9619.2","title":"Implement content-first idempotent import","description":"**Summary:** Refactored issue import to be content-first and idempotent, ensuring consistent data synchronization across multiple import rounds by prioritizing content hash matching over ID-based updates.\n\n**Key Decisions:** \n- Implement content hash as primary matching mechanism\n- Create global collision resolution algorithm\n- Ensure importing same data multiple times results in no-op\n\n**Resolution:** The new import strategy guarantees predictable convergence across distributed systems, solving rename detection and collision handling while maintaining data integrity during multi-stage imports.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:38:25.671302-07:00","updated_at":"2025-12-17T23:18:29.112032-08:00","dependencies":[{"issue_id":"bd-cbed9619.2","depends_on_id":"bd-cbed9619.5","type":"blocks","created_at":"2025-10-28T18:39:28.360026-07:00","created_by":"daemon"},{"issue_id":"bd-cbed9619.2","depends_on_id":"bd-cbed9619.4","type":"blocks","created_at":"2025-10-28T18:39:28.383624-07:00","created_by":"daemon"},{"issue_id":"bd-cbed9619.2","depends_on_id":"bd-cbed9619.3","type":"blocks","created_at":"2025-10-28T18:39:28.407157-07:00","created_by":"daemon"}],"deleted_at":"2025-12-17T23:18:29.112032-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-20j","title":"sync branch not match config","description":"./bd sync\nā†’ Exporting pending changes to JSONL...\nā†’ No changes to commit\nā†’ Pulling from sync branch 'gh-386'...\nError pulling from sync branch: failed to create worktree: failed to create worktree parent directory: mkdir /var/home/matt/dev/beads/worktree-db-fail/.git: not a directory\nmatt@blufin-framation ~/d/b/worktree-db-fail (worktree-db-fail) [1]\u003e bd config list\n\nConfiguration:\n auto_compact_enabled = false\n compact_batch_size = 50\n compact_model = claude-3-5-haiku-20241022\n compact_parallel_workers = 5\n compact_tier1_days = 30\n compact_tier1_dep_levels = 2\n compact_tier2_commits = 100\n compact_tier2_days = 90\n compact_tier2_dep_levels = 5\n compaction_enabled = false\n issue_prefix = worktree-db-fail\n sync.branch = worktree-db-fail","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-08T06:49:04.449094018-07:00","updated_at":"2025-12-08T06:49:04.449094018-07:00"} -{"id":"bd-indn","title":"bd template commands fail with daemon mode","description":"The `bd template show` and `bd template instantiate` commands fail with 'Error loading template: no database connection' when daemon is running.\n\n**Reproduction:**\n```bash\nbd daemon --start\nbd template show bd-qqc # Error: no database connection\nbd template show bd-qqc --no-daemon # Works\n```\n\n**Expected:** Template commands should work with daemon like other commands.\n\n**Workaround:** Use `--no-daemon` flag.\n\n**Location:** Likely in cmd/bd/template.go - daemon RPC path not implemented for template operations.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-18T22:57:35.16596-08:00","updated_at":"2025-12-18T22:57:35.16596-08:00"} -{"id":"bd-nl2","title":"No logging/debugging for tombstone resurrection events","description":"Per the design document bd-zvg Open Question 1: Should resurrection log a warning? Recommendation was Yes. Currently, when an expired tombstone loses to a live issue (resurrection), there is no logging or debugging output. This makes it hard to understand why an issue reappeared. Recommendation: Add optional debug logging when resurrection occurs, e.g., Issue bd-abc resurrected (tombstone expired). Files: internal/merge/merge.go:359-366, 371-378, 400-405, 410-415","status":"open","priority":4,"issue_type":"feature","created_at":"2025-12-05T16:36:52.27525-08:00","updated_at":"2025-12-05T16:36:52.27525-08:00"} -{"id":"bd-cb64c226.6","title":"Verify MCP Server Compatibility","description":"Ensure MCP server works with cache-free daemon","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:56:03.241615-07:00","updated_at":"2025-12-17T23:18:29.109644-08:00","deleted_at":"2025-12-17T23:18:29.109644-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-umbf","title":"Design contributor namespace isolation for beads pollution prevention","description":"## Problem\n\nWhen contributors work on beads-the-project using beads-the-tool, their personal work-tracking issues leak into PRs. The .beads/issues.jsonl is intentionally tracked (it's the project's issue database), but contributors' local issues pollute the diff.\n\nThis is a recursion problem unique to self-hosting projects.\n\n## Possible Solutions to Explore\n\n1. **Contributor namespaces** - Each contributor gets a private prefix (e.g., `bd-steve-xxxx`) that's gitignored or filtered\n2. **Separate database** - Contributors use BEADS_DIR pointing elsewhere for personal tracking\n3. **Issue ownership/visibility flags** - Mark issues as \"local-only\" vs \"project\"\n4. **Prefix-based filtering** - Configure which prefixes are committed vs ignored\n\n## Design Considerations\n\n- Should be zero-friction for contributors (no manual setup)\n- Must not break existing workflows\n- Needs to work with sync/collaboration features\n- Consider: what if a \"personal\" issue graduates to \"project\" issue?\n\n## Expansion Needed\n\nThis is a placeholder. Needs detailed design exploration before implementation.","status":"open","priority":2,"issue_type":"feature","created_at":"2025-12-13T18:00:29.638743-08:00","updated_at":"2025-12-13T18:00:41.345673-08:00"} +{"id":"bd-0d5p","title":"Fix TestRunSync_Timeout failing on macOS","description":"The hooks timeout test fails because exec.CommandContext doesn't properly terminate child processes of shell scripts on macOS. The test creates a hook that runs 'sleep 60' with a 500ms timeout, but it waits the full 60 seconds.\n\nOptions to fix:\n- Use SysProcAttr{Setpgid: true} to create process group and kill the group\n- Skip test on darwin with build tag\n- Use a different approach for timeout testing\n\nLocation: internal/hooks/hooks_test.go:220-253","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T20:52:51.771217-08:00","updated_at":"2025-12-17T23:13:40.532688-08:00","closed_at":"2025-12-17T17:23:55.678799-08:00"} {"id":"bd-0fvq","title":"bd doctor should recommend bd prime migration for existing repos","description":"bd doctor should detect old beads integration patterns and recommend migrating to bd prime approach.\n\n## Current behavior\n- bd doctor checks if Claude hooks are installed globally\n- Doesn't check project-level integration (AGENTS.md, CLAUDE.md)\n- Doesn't recommend migration for repos using old patterns\n\n## Desired behavior\nbd doctor should detect and suggest:\n\n1. **Old slash command pattern detected**\n - Check for /beads:* references in AGENTS.md, CLAUDE.md\n - Suggest: These slash commands are deprecated, use bd prime hooks instead\n \n2. **No agent documentation**\n - Check if AGENTS.md or CLAUDE.md exists\n - Suggest: Run 'bd onboard' or 'bd setup claude' to document workflow\n \n3. **Old MCP-only pattern**\n - Check for instructions to use MCP tools but no bd prime hooks\n - Suggest: Add bd prime hooks for better token efficiency\n\n4. **Migration path**\n - Show: 'Run bd setup claude to add SessionStart/PreCompact hooks'\n - Show: 'Update AGENTS.md to reference bd prime instead of slash commands'\n\n## Example output\n\nāš  Warning: Old beads integration detected in CLAUDE.md\n Found: /beads:* slash command references (deprecated)\n Recommend: Migrate to bd prime hooks for better token efficiency\n Fix: Run 'bd setup claude' and update CLAUDE.md\n\nšŸ’” Tip: bd prime + hooks reduces token usage by 80-99% vs slash commands\n MCP mode: ~50 tokens vs ~10.5k for full MCP scan\n CLI mode: ~1-2k tokens with automatic context recovery\n\n## Benefits\n- Helps existing repos adopt new best practices\n- Clear migration path for users\n- Better token efficiency messaging","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-12T03:20:25.567748-08:00","updated_at":"2025-11-12T03:20:25.567748-08:00"} +{"id":"bd-0kai","title":"Work on beads-ocs: Thin shim hooks to eliminate version d...","description":"Work on beads-ocs: Thin shim hooks to eliminate version drift (GH#615). Replace full hook scripts with thin shims that call bd hooks run. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:57:22.91347-08:00","updated_at":"2025-12-20T00:49:51.926425-08:00","closed_at":"2025-12-19T23:24:08.828172-08:00","close_reason":"Implemented thin shim hooks to eliminate version drift (beads-ocs)"} {"id":"bd-0vg","title":"Pinned issues: persistent context markers","description":"Add ability to pin issues so they remain visible and are excluded from work-finding commands. Pinned issues serve as persistent context markers (handoffs, architectural notes, recovery instructions) that should not be claimed as work items.\n\nUse Cases:\n1. Handoff messages - Pin session handoffs so new agents always see them\n2. Architecture decisions - Pin ADRs or design notes for reference \n3. Recovery context - Pin amnesia-cure notes that help agents orient\n\nCore commands: bd pin, bd unpin, bd list --pinned/--no-pinned","status":"open","priority":1,"issue_type":"epic","created_at":"2025-12-18T23:33:10.911092-08:00","updated_at":"2025-12-18T23:33:17.882415-08:00"} -{"id":"bd-cbed9619.5","title":"Add content-addressable identity to Issue type","description":"**Summary:** Added content-addressable identity to Issue type by implementing a ContentHash field that generates a unique SHA256 fingerprint based on semantic issue content. This resolves issue identification challenges when multiple system instances create issues with identical IDs but different contents.\n\n**Key Decisions:**\n- Use SHA256 for content hashing\n- Hash excludes ID and timestamps\n- Compute hash automatically at creation/import time\n- Add database column for hash storage\n\n**Resolution:** Successfully implemented a deterministic content hashing mechanism that enables reliable issue identification across distributed systems, improving data integrity and collision detection.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:36:44.914967-07:00","updated_at":"2025-12-17T23:18:29.112933-08:00","deleted_at":"2025-12-17T23:18:29.112933-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-by0d","title":"Work on beads-ldv: Fix bd graph crashes with nil pointer ...","description":"Work on beads-ldv: Fix bd graph crashes with nil pointer dereference (GH#657). Fix nil pointer in computeDependencyCounts at graph.go:428. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:27.829359-08:00","updated_at":"2025-12-20T00:26:12.607018-08:00","closed_at":"2025-12-19T23:20:49.038441-08:00"} -{"id":"bd-kwro.4","title":"Graph Link: duplicates for deduplication","description":"Implement duplicates link type for marking issues as duplicates.\n\nNew command:\n- bd duplicate \u003cid\u003e --of \u003ccanonical\u003e - marks id as duplicate of canonical\n- Auto-closes the duplicate issue\n\nQuery support:\n- bd show \u003cid\u003e shows 'Duplicate of: \u003ccanonical\u003e'\n- bd list --duplicates shows all duplicate pairs\n\nStorage:\n- duplicates column pointing to canonical issue ID\n\nEssential for large issue databases with many similar reports.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:36.257223-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-hw3w","title":"Update info.go versionChanges","description":"Add entry to versionChanges in cmd/bd/info.go with agent-actionable changes for {{version}}","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:01.016558-08:00","updated_at":"2025-12-20T17:59:26.262511-08:00","closed_at":"2025-12-20T01:23:50.3879-08:00","dependencies":[{"issue_id":"bd-hw3w","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:14.941855-08:00","created_by":"daemon"},{"issue_id":"bd-hw3w","depends_on_id":"bd-czss","type":"blocks","created_at":"2025-12-19T22:56:23.219257-08:00","created_by":"daemon"}]} -{"id":"bd-crgr","title":"GH#517: Claude sets priority wrong on new install","description":"Claude uses 'medium/high/low' for priority instead of P0-P4. Update bd prime/onboard output to be clearer about priority syntax. See GitHub issue #517.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:34.803084-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-pbh.6","title":"Update integrations/beads-mcp/pyproject.toml to 0.30.4","description":"Update version in pyproject.toml:\n```toml\nversion = \"0.30.4\"\n```\n\n\n```verify\ngrep -q 'version = \"0.30.4\"' integrations/beads-mcp/pyproject.toml\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.994004-08:00","updated_at":"2025-12-17T21:46:46.246574-08:00","closed_at":"2025-12-17T21:46:46.246574-08:00","dependencies":[{"issue_id":"bd-pbh.6","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.994376-08:00","created_by":"daemon"}]} -{"id":"bd-qqc","title":"Release v{{version}}","description":"Version bump workflow for beads release {{version}}.\n\n## Variables\n- `{{version}}` - The new version number (e.g., 0.31.0)\n- `{{date}}` - Release date (YYYY-MM-DD format)\n\n## Workflow Steps\n1. Kill running daemons\n2. Run tests and linting\n3. Bump version in all files (10 files total)\n4. Update cmd/bd/info.go with release notes\n5. Commit and push version bump\n6. Create and push git tag\n7. Update Homebrew formula\n8. Upgrade local Homebrew installation\n9. Verify installation\n\n## Files Updated by bump-version.sh\n- cmd/bd/version.go\n- .claude-plugin/plugin.json\n- .claude-plugin/marketplace.json\n- integrations/beads-mcp/pyproject.toml\n- integrations/beads-mcp/src/beads_mcp/__init__.py\n- README.md\n- npm-package/package.json\n- cmd/bd/templates/hooks/* (4 files)\n- CHANGELOG.md\n\n## Manual Step Required\n- cmd/bd/info.go - Add versionChanges entry with release notes","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-18T12:59:00.610371-08:00","updated_at":"2025-12-20T17:59:26.263219-08:00","closed_at":"2025-12-20T01:18:46.71424-08:00"} -{"id":"bd-w193","title":"Work on beads-399: Add omitempty to JSONL fields for smal...","description":"Work on beads-399: Add omitempty to JSONL fields for smaller notifications. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:37.440894-08:00","updated_at":"2025-12-20T00:26:12.607705-08:00","closed_at":"2025-12-19T23:23:09.542288-08:00"} -{"id":"bd-bgr","title":"Test stdin 2","description":"Description from stdin test\n","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T17:28:05.41434-08:00","updated_at":"2025-12-17T17:28:33.833288-08:00","closed_at":"2025-12-17T17:28:33.833288-08:00"} -{"id":"bd-r6a.2","title":"Implement subgraph cloning with variable substitution","description":"Core implementation of template instantiation:\n\n1. Add `bd template instantiate \u003ctemplate-id\u003e [--var key=value]...` command\n2. Implement subgraph loading:\n - Load template epic\n - Recursively load all children (and their children)\n - Load all dependencies between issues in the subgraph\n3. Implement variable substitution:\n - Scan titles and descriptions for `{{name}}` patterns\n - Replace with provided values\n - Error on missing required variables (or prompt interactively)\n4. Implement cloning:\n - Generate new IDs for all issues\n - Create cloned issues with substituted text\n - Remap and create dependencies\n5. Return the new epic ID\n\nConsider adding `--dry-run` flag to preview what would be created.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T22:43:25.179848-08:00","updated_at":"2025-12-17T23:02:29.034444-08:00","closed_at":"2025-12-17T23:02:29.034444-08:00","dependencies":[{"issue_id":"bd-r6a.2","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:25.180286-08:00","created_by":"daemon"},{"issue_id":"bd-r6a.2","depends_on_id":"bd-r6a.1","type":"blocks","created_at":"2025-12-17T22:44:03.15413-08:00","created_by":"daemon"}]} -{"id":"bd-9l0h","title":"Run tests and linting","description":"go test -short ./... \u0026\u0026 golangci-lint run ./...","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:19.527602-08:00","updated_at":"2025-12-20T21:55:29.660914-08:00","closed_at":"2025-12-20T21:55:29.660914-08:00","dependencies":[{"issue_id":"bd-9l0h","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:19.529203-08:00","created_by":"daemon"},{"issue_id":"bd-9l0h","depends_on_id":"bd-gocx","type":"blocks","created_at":"2025-12-20T21:53:29.753682-08:00","created_by":"daemon"}]} -{"id":"bd-gxq","title":"Simplify bd onboard to minimal AGENTS.md snippet pointing to bd prime","description":"## Context\nGH#604 raised concerns about bd onboard bloating AGENTS.md with ~100+ lines of static instructions that:\n- Load every session whether beads is being used or not\n- Get stale when bd upgrades\n- Waste tokens\n\n## Solution\nSimplify `bd onboard` to output a minimal snippet (~2 lines) that points to `bd prime`:\n\n```markdown\n## Issue Tracking\nThis project uses beads (`bd`) for issue tracking.\nRun `bd prime` for workflow context, or hooks auto-inject it.\n```\n\n## Rationale\n- `bd prime` is dynamic, concise (~80 lines), and always matches installed bd version\n- Hooks already auto-inject `bd prime` at session start when .beads/ detected\n- AGENTS.md only needs to mention beads exists, not contain full instructions\n\n## Implementation\n1. Update `cmd/bd/onboard.go` to output minimal snippet\n2. Keep `--output` flag for BD_GUIDE.md generation (may still be useful)\n3. Update help text to explain the new approach","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T11:42:38.604891-08:00","updated_at":"2025-12-18T11:47:28.020419-08:00","closed_at":"2025-12-18T11:47:28.020419-08:00"} -{"id":"bd-hzvz","title":"Update info.go versionChanges","description":"Add entry to versionChanges in cmd/bd/info.go with agent-actionable changes for 0.30.7","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649359-08:00","updated_at":"2025-12-19T22:57:31.604229-08:00","closed_at":"2025-12-19T22:57:31.604229-08:00","dependencies":[{"issue_id":"bd-hzvz","depends_on_id":"bd-2ep8","type":"blocks","created_at":"2025-12-19T22:56:48.652376-08:00","created_by":"stevey"},{"issue_id":"bd-hzvz","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.652068-08:00","created_by":"stevey"}]} -{"id":"bd-fx7v","title":"Improve test coverage for cmd/bd/doctor/fix (23.9% ā†’ 50%)","description":"The doctor/fix package has only 23.9% test coverage. The doctor fix functionality is important for troubleshooting.\n\nCurrent coverage: 23.9%\nTarget coverage: 50%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:05.67127-08:00","updated_at":"2025-12-13T21:01:20.839298-08:00"} -{"id":"bd-llfl","title":"Improve test coverage for cmd/bd CLI (26.2% ā†’ 50%)","description":"The main CLI package (cmd/bd) has only 26.2% test coverage. CLI commands should have at least 50% coverage to ensure reliability.\n\nKey areas with low/no coverage:\n- daemon_autostart.go (multiple 0% functions)\n- compact.go (several 0% functions)\n- Various command handlers\n\nCurrent coverage: 26.2%\nTarget coverage: 50%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:03.123341-08:00","updated_at":"2025-12-13T21:01:18.901944-08:00"} -{"id":"bd-9cdc","title":"Update docs for import bug fix","description":"Update AGENTS.md, README.md, TROUBLESHOOTING.md with import.orphan_handling config documentation. Document resurrection behavior, tombstones, config modes. Add troubleshooting section for import failures with deleted parents.","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-04T12:32:30.770415-08:00","updated_at":"2025-11-04T12:32:30.770415-08:00"} -{"id":"bd-pzw7","title":"gt handoff deadlock at handoff.go:125","notes":"When running 'gt handoff -m \"message\"' after successful MR submit, go panics with 'fatal error: all goroutines are asleep - deadlock\\!' at handoff.go:125. The shutdown request still appears to be sent successfully but the command crashes. Stack trace shows issue is in runHandoff select statement.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-19T23:22:12.46315-08:00","updated_at":"2025-12-19T23:22:18.613883-08:00"} -{"id":"bd-4ri","title":"Fix TestFallbackToDirectModeEnablesFlush deadlock causing 10min test timeout","description":"## Problem\n\nTestFallbackToDirectModeEnablesFlush in direct_mode_test.go deadlocks for 9m59s before timing out, causing the entire test suite to take 10+ minutes instead of \u003c10 seconds.\n\n## Root Cause\n\nDatabase lock contention between test cleanup and flushToJSONL():\n- Test cleanup (line 36) tries to close DB via defer\n- flushToJSONL() (line 132) is still accessing DB\n- Results in deadlock: database/sql.(*DB).Close() waits for mutex while GetJSONLFileHash() holds it\n\n## Stack Trace Evidence\n\n```\ngoroutine 512 [sync.Mutex.Lock, 9 minutes]:\ndatabase/sql.(*DB).Close(0x14000643790)\n .../database/sql/sql.go:927 +0x84\ngithub.com/steveyegge/beads/cmd/bd.TestFallbackToDirectModeEnablesFlush.func1()\n .../direct_mode_test.go:36 +0xf4\n\nWhile goroutine running flushToJSONL() holds DB connection via GetJSONLFileHash()\n```\n\n## Impact\n\n- Test suite: 10+ minutes ā†’ should be \u003c10 seconds\n- ALL other tests pass in ~4 seconds\n- This ONE test accounts for 99.9% of test runtime\n\n## Related\n\nThis is the EXACT same issue documented in MAIN_TEST_REFACTOR_NOTES.md for why main_test.go refactoring was deferred - global state manipulation + DB cleanup = deadlock.\n\n## Fix Approaches\n\n1. **Add proper cleanup sequencing** - stop flush goroutines BEFORE closing DB\n2. **Use test-specific DB lifecycle** - ensure flush completes before cleanup\n3. **Mock the flush mechanism** - avoid real DB for testing this code path \n4. **Add explicit timeout handling** - fail fast with clear error instead of hanging\n\n## Files\n\n- cmd/bd/direct_mode_test.go:36-132\n- cmd/bd/autoflush.go:353 (validateJSONLIntegrity)\n- cmd/bd/autoflush.go:508 (flushToJSONLWithState)\n\n## Acceptance\n\n- Test passes without timeout\n- Test suite completes in \u003c10 seconds\n- No deadlock between cleanup and flush operations","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-21T20:09:00.794372-05:00","updated_at":"2025-12-17T23:13:40.533279-08:00","closed_at":"2025-12-17T17:25:07.626617-08:00"} -{"id":"bd-haze","title":"Fix beads-9yc: pinned column missing from schema. gt mail...","description":"Fix beads-9yc: pinned column missing from schema. gt mail send fails because some beads DBs lack the pinned column. Add migration to ensure it exists.","status":"in_progress","priority":2,"issue_type":"task","created_at":"2025-12-19T15:05:33.394801-08:00","updated_at":"2025-12-19T15:05:33.524491-08:00"} -{"id":"bd-2oo.1","title":"Add metadata and thread_id columns to dependencies table","description":"Schema changes:\n- ALTER TABLE dependencies ADD COLUMN metadata TEXT DEFAULT '{}'\n- ALTER TABLE dependencies ADD COLUMN thread_id TEXT DEFAULT ''\n- CREATE INDEX idx_dependencies_thread ON dependencies(thread_id) WHERE thread_id != ''","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:00.468223-08:00","updated_at":"2025-12-18T02:49:10.575133-08:00","closed_at":"2025-12-18T02:49:10.575133-08:00","dependencies":[{"issue_id":"bd-2oo.1","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:00.470012-08:00","created_by":"daemon"}]} -{"id":"bd-eyrh","title":"šŸ¤ HANDOFF: Review remaining beads PRs","description":"## Current State\nJust merged PR #653 (doctor refactor) and added tests to restore coverage.\n\n## Remaining Open PRs to Review\nRun `gh pr list --repo steveyegge/beads` to see current list. As of handoff:\n\n1. #655 - feat: Linear Integration (jblwilliams)\n2. #651 - feat(audit): agent audit trail (dchichkov)\n3. #648 - Stop init creating redundant @AGENTS.md (maphew)\n4. #646 - fix(unix): handle Statfs field types (jordanhubbard)\n5. #645 - feat: /plan-to-beads Claude Code command (petebytes)\n6. #642, #641, #640 - sync branch fixes (cpdata)\n\n## Review Checklist\n- Check CI status with `gh pr checks \u003cnum\u003e --repo steveyegge/beads`\n- Verify no .beads/ data leaking (we have a hook now)\n- Review code quality\n- Merge good ones, request changes on problematic ones\n\n## Notes\n- User wants us to be proactive about merging good PRs\n- Can add tests ourselves if coverage drops","status":"closed","priority":2,"issue_type":"message","created_at":"2025-12-19T17:44:34.149837-08:00","updated_at":"2025-12-19T23:28:32.428731-08:00","closed_at":"2025-12-19T17:53:20.386937-08:00"} -{"id":"bd-qqc.3","title":"Update CHANGELOG.md for {{version}}","description":"In CHANGELOG.md:\n\n1. Change `## [Unreleased]` section header to `## [{{version}}] - {{date}}`\n2. Add new empty `## [Unreleased]` section above it\n3. Review and clean up the changes list\n\nFormat:\n```markdown\n## [Unreleased]\n\n## [{{version}}] - {{date}}\n\n### Added\n- ...\n\n### Changed\n- ...\n\n### Fixed\n- ...\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:39.738561-08:00","updated_at":"2025-12-18T23:34:18.629213-08:00","closed_at":"2025-12-18T22:41:41.846609-08:00","dependencies":[{"issue_id":"bd-qqc.3","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:39.739138-08:00","created_by":"stevey"}]} -{"id":"bd-qqc.4","title":"Run tests and verify build","description":"Run the test suite to verify nothing is broken:\n\n```bash\n./scripts/test.sh\n```\n\nOr manually:\n```bash\ngo build ./cmd/bd/...\ngo test ./...\n```\n\nFix any failures before proceeding.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:52.308314-08:00","updated_at":"2025-12-18T23:34:18.631671-08:00","closed_at":"2025-12-18T22:41:41.856318-08:00","dependencies":[{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc.3","type":"blocks","created_at":"2025-12-18T13:00:51.014568-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:52.308943-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc.1","type":"blocks","created_at":"2025-12-18T13:00:40.62142-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc.2","type":"blocks","created_at":"2025-12-18T13:00:45.820132-08:00","created_by":"stevey"}]} -{"id":"bd-7tuu","title":"Commit and push release","description":"git add -A \u0026\u0026 git commit \u0026\u0026 git push to trigger CI","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:02.053382-08:00","updated_at":"2025-12-20T01:23:52.484043-08:00","closed_at":"2025-12-20T01:23:52.484043-08:00","dependencies":[{"issue_id":"bd-7tuu","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.021087-08:00","created_by":"daemon"},{"issue_id":"bd-7tuu","depends_on_id":"bd-hw3w","type":"blocks","created_at":"2025-12-19T22:56:23.291591-08:00","created_by":"daemon"}]} -{"id":"bd-yck","title":"Fix checkExistingBeadsData to be worktree-aware","description":"The checkExistingBeadsData function in cmd/bd/init.go checks for .beads in the current working directory, but for worktrees it should check the main repository root instead. This prevents proper worktree compatibility.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-07T16:48:32.082776345-07:00","updated_at":"2025-12-07T16:48:32.082776345-07:00"} -{"id":"bd-c83r","title":"Prevent multiple daemons from running on the same repo","description":"Multiple bd daemons running on the same repo clone causes race conditions and data corruption risks.\n\n**Problem:**\n- Nothing prevents spawning multiple daemons for the same repository\n- Multiple daemons watching the same files can conflict during sync operations\n- Observed: 4 daemons running simultaneously caused sync race condition\n\n**Solution:**\nImplement daemon singleton enforcement per repo:\n1. Use a lock file (e.g., .beads/.daemon.lock) with PID\n2. On daemon start, check if lock exists and process is alive\n3. If stale lock (dead PID), clean up and acquire lock\n4. If active daemon exists, either:\n - Exit with message 'daemon already running (PID xxx)'\n - Or offer --replace flag to kill existing and take over\n5. Release lock on graceful shutdown\n\n**Edge cases to handle:**\n- Daemon crashes without releasing lock (stale PID detection)\n- Multiple repos in same directory tree (each repo gets own lock)\n- Race between two daemons starting simultaneously (atomic lock acquisition)","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-13T06:37:23.377131-08:00","updated_at":"2025-12-16T01:14:49.50347-08:00","closed_at":"2025-12-14T17:34:14.990077-08:00"} -{"id":"bd-pbh.19","title":"Install 0.30.4 MCP server locally","description":"Upgrade the MCP server (after PyPI publish):\n```bash\npip install --upgrade beads-mcp\n# OR if using uv:\nuv tool upgrade beads-mcp\n```\n\nVerify:\n```bash\npip show beads-mcp | grep Version\n```\n\n\n```verify\npip show beads-mcp 2\u003e/dev/null | grep -q 'Version: 0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.124496-08:00","updated_at":"2025-12-17T21:46:46.372989-08:00","closed_at":"2025-12-17T21:46:46.372989-08:00","dependencies":[{"issue_id":"bd-pbh.19","depends_on_id":"bd-pbh.14","type":"blocks","created_at":"2025-12-17T21:19:11.343558-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.19","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.124829-08:00","created_by":"daemon"}]} -{"id":"bd-p5za","title":"mol-christmas-launch: 3-day execution plan","description":"Christmas Launch Molecule - execute phases in order, survive restarts.\n\nPIN THIS BEAD. Check progress each session start.\n\n## Step: phase0-beads-foundation\nFix blocking issues before swarming:\n1. Verify gastown beads schema works: bd list --status=open\n2. Ensure bd mol bond exists (check bd-usro)\n3. Verify bd-2vh3 (squash) is filed\n\n## Step: phase1-polecat-loop\nSerial work on polecat execution:\n1. gt-9nf: Fresh polecats only\n2. gt-975: Molecule execution support\n3. gt-8v8: Refuse uncommitted work\nThen swarm: gt-e1y, gt-f8v, gt-eu9\nNeeds: phase0-beads-foundation\n\n## Step: phase2-refinery\nSerial work on refinery autonomy:\n1. gt-5gkd: Refinery CLAUDE.md\n2. gt-bj6f: Refinery context in gt prime\n3. gt-0qki: Refinery-Witness protocol\nNeeds: phase1-polecat-loop\n\n## Step: phase3-deacon\nHealth monitoring infrastructure:\n1. gt-5af.4: Simplify daemon\n2. gt-5af.7: Crew session patterns\n3. gt-976: Crew lifecycle\nNeeds: phase2-refinery\n\n## Step: phase4-code-review\nSelf-improvement flywheel:\n1. Define mol-code-review (gt-fjvo)\n2. Test on open MRs\n3. Integrate with Refinery\nNeeds: phase3-deacon\n\n## Step: phase5-polish\nDemo readiness:\n1. gt-b2hj: Find orphaned work\n2. Doctor checks\n3. Clean up open MRs\nNeeds: phase4-code-review\n\n## Step: verify-flywheel\nSuccess criteria:\n- gt spawn works with molecules\n- Refinery processes MRs autonomously\n- mol-code-review runs on a PR\n- bd cleanup --ephemeral works\nNeeds: phase5-polish","status":"open","issue_type":"epic","created_at":"2025-12-20T21:20:02.462889-08:00","updated_at":"2025-12-20T21:20:02.462889-08:00"} -{"id":"bd-8e0q","title":"Merge: beads-ocs","description":"branch: polecat/valkyrie\ntarget: main\nsource_issue: beads-ocs\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:24:45.281478-08:00","updated_at":"2025-12-19T23:24:45.281478-08:00"} -{"id":"bd-kwro.2","title":"Graph Link: replies_to for conversation threading","description":"Implement replies_to link type for message threading.\n\nNew command:\n- bd mail reply \u003cid\u003e -m 'Response' creates a message with replies_to set\n\nQuery support:\n- bd show \u003cid\u003e --thread shows full conversation thread\n- Thread traversal in storage layer\n\nStorage:\n- replies_to column in issues table\n- Index for efficient thread queries\n\nThis enables Reddit-style nested threads where messages reply to other messages.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:25.292728-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-pbh.17","title":"Install 0.30.4 Go binary locally","description":"Rebuild and install the Go binary:\n```bash\ngo install ./cmd/bd\n# OR\nmake install\n```\n\nVerify:\n```bash\nbd --version\n```\n\n\n```verify\nbd --version 2\u003e\u00261 | grep -q '0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.108597-08:00","updated_at":"2025-12-17T21:46:46.352702-08:00","closed_at":"2025-12-17T21:46:46.352702-08:00","dependencies":[{"issue_id":"bd-pbh.17","depends_on_id":"bd-pbh.13","type":"blocks","created_at":"2025-12-17T21:19:11.322091-08:00","created_by":"daemon"},{"issue_id":"bd-pbh.17","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.108917-08:00","created_by":"daemon"}]} -{"id":"bd-bgm","title":"Fix unparam unused parameter in cmd/bd/doctor.go:1879","description":"Linting issue: checkGitHooks - path is unused (unparam) at cmd/bd/doctor.go:1879:20. Error: func checkGitHooks(path string) doctorCheck {","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:25.270293252-07:00","updated_at":"2025-12-17T23:13:40.532991-08:00","closed_at":"2025-12-17T16:46:11.026693-08:00"} -{"id":"bd-cb64c226.8","title":"Update Metrics and Health Endpoints","description":"Remove cache-related metrics from health/metrics endpoints","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:49.212047-07:00","updated_at":"2025-12-17T23:18:29.110022-08:00","deleted_at":"2025-12-17T23:18:29.110022-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-411u","title":"Document BEADS_DIR pattern for multi-agent workspaces (Gas Town)","description":"Gas Town and similar multi-agent systems need to configure separate beads databases per workspace/rig, distinct from any project-level beads.\n\n## Use Case\n\nIn Gas Town:\n- Each 'rig' (managed project) has multiple agents (polecats, refinery, witness)\n- All agents in a rig should share a single beads database at the rig level\n- This should be separate from any .beads/ the project itself uses\n- The BEADS_DIR env var enables this\n\n## Documentation Needed\n\n1. Add a section to docs explaining BEADS_DIR for multi-agent setups\n2. Example: setting BEADS_DIR in agent startup scripts/hooks\n3. Clarify interaction with project-level .beads/ (BEADS_DIR takes precedence)\n\n## Current Support\n\nAlready implemented in internal/beads/beads.go:FindDatabasePath():\n- BEADS_DIR env var is checked first (preferred)\n- BEADS_DB env var still supported (deprecated)\n- Falls back to .beads/ search in tree\n\nJust needs documentation for the multi-agent workspace pattern.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-15T22:08:22.158027-08:00","updated_at":"2025-12-15T22:08:22.158027-08:00"} -{"id":"bd-kwro.3","title":"Graph Link: relates_to for knowledge graph","description":"Implement relates_to link type for loose associations.\n\nNew command:\n- bd relate \u003cid1\u003e \u003cid2\u003e - creates bidirectional relates_to link\n\nQuery support:\n- bd show \u003cid\u003e --related shows related issues\n- bd list --related-to \u003cid\u003e\n\nStorage:\n- relates_to stored as JSON array of issue IDs\n- Consider: separate junction table for efficiency at scale?\n\nThis enables 'see also' connections without blocking or hierarchy.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:30.793115-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-aydr","title":"Add bd reset command for clean slate restart","description":"Implement a `bd reset` command to reset beads to a clean starting state.\n\n## Context\nGitHub issue #479 - users sometimes get beads into an invalid state after updates, and there's no clean way to start fresh. The git backup/restore mechanism that protects against accidental deletion also makes it hard to intentionally reset.\n\n## Design\n\n### Command Interface\n```\nbd reset [--hard] [--force] [--backup] [--dry-run] [--no-init]\n```\n\n| Flag | Effect |\n|------|--------|\n| `--hard` | Also remove from git index and commit |\n| `--force` | Skip confirmation prompt |\n| `--backup` | Create `.beads-backup-{timestamp}/` first |\n| `--dry-run` | Preview what would happen |\n| `--no-init` | Don't re-initialize after clearing |\n\n### Reset Levels\n1. **Soft Reset (default)** - Kill daemons, clear .beads/, re-init. Git history unchanged.\n2. **Hard Reset (`--hard`)** - Also git rm and commit the removal, then commit fresh state.\n\n### Implementation Flow\n1. Validate .beads/ exists\n2. If not --force: show impact summary, prompt confirmation\n3. If --backup: copy .beads/ to .beads-backup-{timestamp}/\n4. Kill daemons\n5. If --hard: git rm + commit\n6. rm -rf .beads/*\n7. If not --no-init: bd init (and git add+commit if --hard)\n8. Print summary\n\n### Safety Mechanisms\n- Confirmation prompt (skip with --force)\n- Impact summary (issue/tombstone counts)\n- Backup option\n- Dry-run preview\n- Git dirty check warning\n\n### Code Structure\n- `cmd/bd/reset.go` - CLI command\n- `internal/reset/` - Core logic package","status":"closed","priority":2,"issue_type":"epic","created_at":"2025-12-13T08:44:01.38379+11:00","updated_at":"2025-12-13T06:24:29.561294-08:00","closed_at":"2025-12-13T10:18:19.965287+11:00"} -{"id":"bd-7bbc4e6a","title":"Add MCP server functions for repair commands","description":"**Summary:** Added MCP server repair functions for agent dependency management, system validation, and pollution detection. Implemented across BdClientBase, BdCliClient, and daemon clients to enhance system diagnostics and self-healing capabilities.\n\n**Key Decisions:** \n- Expose repair_deps(), detect_pollution(), validate() via MCP server\n- Create abstract method stubs with fallback to CLI execution\n- Use @mcp.tool decorators for function registration\n\n**Resolution:** Successfully implemented comprehensive repair command infrastructure, enabling more robust system health monitoring and automated remediation with full CLI and daemon support.","notes":"Implemented all three MCP server functions:\n\n1. **repair_deps(fix=False)** - Find/fix orphaned dependencies\n2. **detect_pollution(clean=False)** - Detect/clean test issues \n3. **validate(checks=None, fix_all=False)** - Run comprehensive health checks\n\nChanges:\n- Added abstract methods to BdClientBase\n- Implemented in BdCliClient (CLI execution)\n- Added NotImplementedError stubs in BdDaemonClient (falls back to CLI)\n- Created wrapper functions in tools.py\n- Registered @mcp.tool decorators in server.py\n\nAll commands tested and working with --no-daemon flag.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-28T19:37:55.72639-07:00","updated_at":"2025-12-16T01:08:11.983953-08:00","closed_at":"2025-11-07T19:38:12.152437-08:00"} -{"id":"bd-xj2e","title":"GH#522: Add --type flag to bd update command","description":"Add --type flag to bd update for changing issue type (task/epic/bug/feature). Storage layer already supports it. See GitHub issue #522.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:12.506583-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-fom","title":"Remove all deletions.jsonl code except migration","description":"There's deletions manifest code spread across the entire codebase that should have been removed after tombstone migration:\n\nFiles with deletions code (non-migration):\n- internal/deletions/ - entire package\n- cmd/bd/sync.go - 25+ references, auto-compact, sanitize\n- cmd/bd/delete.go - dual-writes to deletions.jsonl\n- internal/importer/importer.go - checks deletions manifest\n- internal/syncbranch/worktree.go - merges deletions.jsonl\n- cmd/bd/doctor/fix/sync.go - cleanupDeletionsManifest\n- cmd/bd/doctor/fix/deletions.go - HydrateDeletionsManifest\n- cmd/bd/integrity.go - checks deletions for data loss\n- cmd/bd/deleted.go - entire command\n- cmd/bd/compact.go - pruneDeletionsManifest\n- cmd/bd/doctor.go - checkDeletionsManifest\n- Plus many more\n\nAction: Aggressively remove all non-migration deletions code. Tombstones are the only deletion mechanism now.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T13:29:04.960863-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-i0rx","title":"Merge: bd-ao0s","description":"branch: polecat/rictus\ntarget: main\nsource_issue: bd-ao0s\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-20T01:13:42.716658-08:00","updated_at":"2025-12-20T01:13:42.716658-08:00"} -{"id":"bd-aydr.6","title":"Add unit tests for reset package","description":"Comprehensive unit tests for internal/reset package.\n\n## Test Cases\n\n### ValidateState tests\n- .beads/ exists ā†’ success\n- .beads/ missing ā†’ appropriate error\n- git dirty state detection\n\n### CountImpact tests \n- Empty .beads/ ā†’ zero counts\n- With issues ā†’ correct count (open vs closed)\n- With tombstones ā†’ correct count\n- Returns HasUncommitted correctly\n\n### Backup tests\n- Creates backup with correct timestamp format\n- Preserves all files and permissions\n- Returns correct path\n- Handles missing .beads/ gracefully\n- Errors on pre-existing backup dir\n\n### Git operation tests\n- CheckGitState detects dirty, detached, not-a-repo\n- GitRemoveBeads removes correct files\n- GitCommitReset creates commit with message\n- Operations skip gracefully when not in git repo\n\n### Reset tests (with mocks/temp dirs)\n- Soft reset removes files, calls init\n- Hard reset includes git operations\n- Dry run doesn't modify anything\n- SkipInit flag prevents re-initialization\n- Daemon killall is called\n- Backup is created when requested\n\n## Approach\n- Can start with interface definitions (TDD style)\n- Use testify for assertions\n- Create temp directories for isolation\n- Mock git operations where needed\n- Test completion depends on implementation tasks\n\n## File Location\n`internal/reset/reset_test.go`\n`internal/reset/backup_test.go`\n`internal/reset/git_test.go`","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:57.01739+11:00","updated_at":"2025-12-13T10:13:32.611698+11:00","closed_at":"2025-12-13T09:59:20.820314+11:00","dependencies":[{"issue_id":"bd-aydr.6","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:57.017813+11:00","created_by":"daemon"}]} -{"id":"bd-au0.6","title":"Add comprehensive filters to bd export","description":"Enhance bd export with filtering options for selective exports.\n\n**Currently only has:**\n- --status\n\n**Add filters:**\n- --label, --label-any\n- --assignee\n- --type\n- --priority, --priority-min, --priority-max\n- --created-after, --created-before\n- --updated-after, --updated-before\n\n**Use case:**\n- Export only open issues: bd export --status open\n- Export high-priority bugs: bd export --type bug --priority-max 1\n- Export recent issues: bd export --created-after 2025-01-01\n\n**Files to modify:**\n- cmd/bd/export.go\n- Reuse filter logic from list.go","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-21T21:07:19.431307-05:00","updated_at":"2025-11-21T21:07:19.431307-05:00","dependencies":[{"issue_id":"bd-au0.6","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:19.432983-05:00","created_by":"daemon"}]} -{"id":"bd-vpan","title":"Re: Thread Test 2","description":"Got your message. Testing reply feature.","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:29.144352-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-vpan","depends_on_id":"bd-x36g","type":"replies-to","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} -{"id":"bd-6gd","title":"Remove legacy MCP Agent Mail integration","description":"## Summary\n\nRemove the legacy MCP Agent Mail system that requires an external HTTP server. Keep the native `bd mail` system which stores messages as git-synced issues.\n\n## Background\n\nTwo mail systems exist in the codebase:\n1. **Legacy Agent Mail** (`bd message`) - External server dependency, complex setup\n2. **Native bd mail** (`bd mail`) - Built-in, git-synced, no dependencies\n\nThe legacy system causes confusion and is no longer needed. Gas Town's Town Mail will use the native `bd mail` system.\n\n## Files to Delete\n\n### CLI Command\n- [ ] `cmd/bd/message.go` - The `bd message` command implementation\n\n### MCP Integration\n- [ ] `integrations/beads-mcp/src/beads_mcp/mail.py` - HTTP wrapper for Agent Mail server\n- [ ] `integrations/beads-mcp/src/beads_mcp/mail_tools.py` - MCP tool definitions\n- [ ] `integrations/beads-mcp/tests/test_mail.py` - Tests for legacy mail\n\n### Documentation\n- [ ] `docs/AGENT_MAIL.md`\n- [ ] `docs/AGENT_MAIL_QUICKSTART.md`\n- [ ] `docs/AGENT_MAIL_DEPLOYMENT.md`\n- [ ] `docs/AGENT_MAIL_MULTI_WORKSPACE_SETUP.md`\n- [ ] `docs/adr/002-agent-mail-integration.md`\n\n## Code to Update\n\n- [ ] Remove `message` command registration from `cmd/bd/main.go`\n- [ ] Remove mail tool imports/registration from MCP server `__init__.py` or `server.py`\n- [ ] Check for any other references to Agent Mail in the codebase\n\n## Verification\n\n- [ ] `bd message` command no longer exists\n- [ ] `bd mail` command still works\n- [ ] MCP server starts without errors\n- [ ] Tests pass\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T23:04:04.099935-08:00","updated_at":"2025-12-17T23:13:24.128752-08:00","closed_at":"2025-12-17T23:13:24.128752-08:00"} -{"id":"bd-2wh","title":"Test pinned for stats","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-18T21:47:09.334108-08:00","updated_at":"2025-12-18T21:47:25.17917-08:00","deleted_at":"2025-12-18T21:47:25.17917-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-qqc.10","title":"Upgrade local Homebrew installation","description":"Upgrade bd via Homebrew:\n\n```bash\nbrew update\nbrew upgrade bd\n/opt/homebrew/bin/bd version # Verify shows {{version}}\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:37.60241-08:00","updated_at":"2025-12-18T23:07:55.686598-08:00","closed_at":"2025-12-18T22:52:00.331429-08:00","dependencies":[{"issue_id":"bd-qqc.10","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:37.603893-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.10","depends_on_id":"bd-qqc.9","type":"blocks","created_at":"2025-12-18T22:43:21.458817-08:00","created_by":"daemon"}]} -{"id":"bd-toy3","title":"Test hook","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T18:33:39.717036-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-r6a.1","title":"Revert/remove YAML workflow system","description":"Revert the recent commit and remove all YAML workflow code:\n\n1. `git revert aae8407a` (the commit we just pushed with workflow fixes)\n2. Remove `cmd/bd/templates/workflows/` directory\n3. Remove workflow.go or gut it to minimal stub\n4. Remove WorkflowTemplate types from internal/types/workflow.go\n5. Remove any workflow-related RPC handlers\n\nKeep only minimal scaffolding if needed for the new template system.","status":"closed","issue_type":"task","created_at":"2025-12-17T22:42:07.339684-08:00","updated_at":"2025-12-17T22:46:08.606088-08:00","closed_at":"2025-12-17T22:46:08.606088-08:00","dependencies":[{"issue_id":"bd-r6a.1","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:42:07.340117-08:00","created_by":"daemon"}]} -{"id":"bd-n3v","title":"Error committing to sync branch: failed to create worktree","description":"\u003e bd sync --no-daemon\nā†’ Exporting pending changes to JSONL...\nā†’ Committing changes to sync branch 'beads-sync'...\nError committing to sync branch: failed to create worktree: failed to create worktree parent directory: mkdir /var/home/matt/dev/beads/fix-ci/.git: not a directory","notes":"**Problem Diagnosed**: The `bd sync` command was failing with \"mkdir /var/home/matt/dev/beads/fix-ci/.git: not a directory\" because it was being executed from the wrong directory.\n\n**Root Cause**: The command was run from `/var/home/matt/dev/beads` (where the `fix-ci` worktree exists) instead of the main repository directory `/var/home/matt/dev/beads/main`. Since `fix-ci` is a git worktree with a `.git` file (not directory), the worktree creation logic failed when trying to create `\u003ccurrent_dir\u003e/.git/beads-worktrees/\u003cbranch\u003e`.\n\n**Solution Verified**: Execute `bd sync` from the main repository directory:\n```bash\ncd main \u0026\u0026 bd sync --dry-run\n```\n","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-05T15:25:24.514998248-07:00","updated_at":"2025-12-05T15:42:32.910166956-07:00"} -{"id":"bd-7h7","title":"bd init should stop running daemon to avoid stale cache","description":"When running bd init, any running daemon continues with stale cached data, causing bd stats and other commands to show old counts.\n\nRepro:\n1. Have daemon running with 788 issues cached\n2. Clean JSONL to 128 issues, delete db, run bd init\n3. bd stats still shows 788 (daemon cache)\n4. Must manually run bd daemon --stop\n\nFix: bd init should automatically stop any running daemon before reinitializing.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T13:26:47.117226-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-j6lr","title":"GH#402: Add --parent flag documentation to bd onboard","description":"bd onboard output is missing --parent flag for epic subtasks. Agents guess wrong syntax (--deps parent:). See GitHub issue #402.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:56.594829-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-dyy","title":"Review PR #513: fix hooks install docs","description":"Review and merge PR #513 from aspiers. This PR fixes incorrect docs for how to install git hooks - updates README to use bd hooks install instead of removed install.sh. Simple 1-line change. URL: https://github.com/anthropics/beads/pull/513","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:15:14.838772+11:00","updated_at":"2025-12-13T07:07:19.718544-08:00","closed_at":"2025-12-13T07:07:19.718544-08:00"} -{"id":"bd-kqo1","title":"Show pin indicator in bd list output","description":"Add a visual indicator (e.g., pin emoji or [P] marker) for pinned issues in bd list output so users can easily identify them.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-18T23:33:47.402549-08:00","updated_at":"2025-12-18T23:33:47.402549-08:00","dependencies":[{"issue_id":"bd-kqo1","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.771791-08:00","created_by":"daemon"},{"issue_id":"bd-kqo1","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.985271-08:00","created_by":"daemon"}]} +{"id":"bd-0w5","title":"Fix update-hooks verification in version-bump.yaml","description":"The update-hooks task verification command at version-bump.yaml:358 always succeeds due to '|| echo ...' fallback. Remove the fallback so verification actually fails when hooks aren't installed.","status":"closed","priority":3,"issue_type":"bug","created_at":"2025-12-17T22:23:06.55467-08:00","updated_at":"2025-12-17T22:34:07.290409-08:00","closed_at":"2025-12-17T22:34:07.290409-08:00"} {"id":"bd-0zp7","title":"Add missing hook calls in mail reply and ack","description":"The mail commands are missing hook calls:\n\n1. runMailReply (mail.go:525-672) creates a message but doesn't call hookRunner.Run(hooks.EventMessage, ...) after creating the reply in direct mode (around line 640)\n\n2. runMailAck (mail.go:432-523) closes messages but doesn't call hookRunner.Run(hooks.EventClose, ...) after closing each message (around line 487 for daemon mode, 493 for direct mode)\n\nThis means GGT hooks won't fire for replies or message acknowledgments.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T20:52:53.069412-08:00","updated_at":"2025-12-17T23:13:40.532054-08:00","closed_at":"2025-12-17T17:22:59.368024-08:00"} -{"id":"bd-cbed9619.3","title":"Implement global N-way collision resolution algorithm","description":"**Summary:** Replaced pairwise collision resolution with a global N-way algorithm that deterministically resolves issue ID conflicts across multiple clones. The new approach groups collisions, deduplicates by content hash, and assigns sequential IDs to ensure consistent synchronization.\n\n**Key Decisions:**\n- Use content hash for global, stable sorting\n- Group collisions by base ID\n- Assign sequential IDs based on sorted unique versions\n- Eliminate order-dependent remapping logic\n\n**Resolution:** Implemented ResolveNWayCollisions function that guarantees deterministic issue ID assignment across multiple synchronization scenarios, solving the core challenge of maintaining consistency in distributed systems with potential conflicts.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:37:42.85616-07:00","updated_at":"2025-12-17T23:18:29.112335-08:00","dependencies":[{"issue_id":"bd-cbed9619.3","depends_on_id":"bd-cbed9619.5","type":"blocks","created_at":"2025-10-28T18:39:28.30886-07:00","created_by":"daemon"},{"issue_id":"bd-cbed9619.3","depends_on_id":"bd-cbed9619.4","type":"blocks","created_at":"2025-10-28T18:39:28.336312-07:00","created_by":"daemon"}],"deleted_at":"2025-12-17T23:18:29.112335-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-xctp","title":"GH#519: bd sync fails when sync.branch is currently checked-out branch","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:06:05.319281-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-hlsw.3","title":"Auto-recovery mode (bd sync --auto-recover)","description":"Add bd sync --auto-recover flag that: detects problematic sync state, backs up .beads/issues.db with timestamp, rebuilds DB from JSONL atomically, verifies consistency, reports what was fixed. Provides safety valve when sync integrity fails.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-14T10:40:20.599836875-07:00","updated_at":"2025-12-14T10:40:20.599836875-07:00","dependencies":[{"issue_id":"bd-hlsw.3","depends_on_id":"bd-hlsw","type":"parent-child","created_at":"2025-12-14T10:40:20.600435888-07:00","created_by":"daemon"}]} -{"id":"bd-4y4g","title":"Bump version in all files","description":"Run ./scripts/bump-version.sh {{version}} to update 10 version files. Then run with --commit after info.go is updated.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:01.859728-08:00","updated_at":"2025-12-18T22:46:24.537336-08:00","closed_at":"2025-12-18T22:46:24.537336-08:00","dependencies":[{"issue_id":"bd-4y4g","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.623724-08:00","created_by":"daemon"},{"issue_id":"bd-4y4g","depends_on_id":"bd-8v2","type":"blocks","created_at":"2025-12-18T22:43:20.823329-08:00","created_by":"daemon"}]} -{"id":"bd-t4u1","title":"False positive detection by Kaspersky Antivirus (Trojan)","description":"Kaspersky Antivirus falsely detects beads (bd.exe v0.23.1) as a Trojan (PDM:Trojan.Win32.Generic) and removes it.\nEvent: Malicious object detected\nComponent: System Watcher\nObject name: bd.exe\n","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-20T18:56:12.498187-05:00","updated_at":"2025-11-20T18:56:12.498187-05:00"} -{"id":"bd-muw","title":"Add empty tasks validation in workflow create","description":"workflow.go:321 will panic if wf.Tasks is empty. Add validation that len(wf.Tasks) \u003e 0 before accessing wf.Tasks[0].","status":"closed","priority":3,"issue_type":"bug","created_at":"2025-12-17T22:23:00.75707-08:00","updated_at":"2025-12-17T22:34:07.281133-08:00","closed_at":"2025-12-17T22:34:07.281133-08:00"} -{"id":"bd-aydr.2","title":"Implement backup functionality for reset","description":"Add backup capability that can be used by reset command.\n\n## Functionality\n- Copy .beads/ to .beads-backup-{timestamp}/\n- Timestamp format: YYYYMMDD-HHMMSS\n- Preserve file permissions\n- Return backup path for user feedback\n\n## Location\n`internal/reset/backup.go` - keep with reset package for now (YAGNI)\n\n## Interface\n```go\nfunc CreateBackup(beadsDir string) (backupPath string, err error)\n```\n\n## Notes\n- Simple recursive file copy, no compression needed\n- Error if backup dir already exists (unlikely with timestamp)\n- Backup directories SHOULD be gitignored\n- Add `.beads-backup-*/` pattern to .beads/.gitignore template in doctor package\n- Consider: ListBackups() for future `bd backup list` command (not for this PR)","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:51.306103+11:00","updated_at":"2025-12-13T10:13:32.610819+11:00","closed_at":"2025-12-13T09:20:20.590488+11:00","dependencies":[{"issue_id":"bd-aydr.2","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:51.306474+11:00","created_by":"daemon"}]} -{"id":"bd-4uoc","title":"Code Review Followup Summary: PR #481 + PR #551","description":"## Merged PRs Summary\n\n### PR #551: Persist close_reason to issues table\n- āœ… Merged successfully\n- āœ… Bug fix: close_reason now persisted in database column (not just events table)\n- āœ… Comprehensive test coverage added\n- āœ… Handles reopen case (clearing close_reason)\n\n**Followup Issues Filed:**\n- bd-lxzx: Document close_reason in JSONL export format\n- bd-077e: Update CLI documentation for close_reason field\n\n---\n\n### PR #481: Context Engineering Optimizations (80-90% context reduction)\n- āœ… Merged successfully \n- āœ… Lazy tool discovery: discover_tools() + get_tool_info()\n- āœ… Minimal issue models: IssueMinimal (~80% smaller than full Issue)\n- āœ… Result compaction: Auto-compacts results \u003e20 items\n- āœ… All 28 tests passing\n- āš ļø Breaking change: ready() and list() return type changed\n\n**Followup Issues Filed:**\n- bd-b318: Add integration tests for CompactedResult\n- bd-4u2b: Make compaction settings configurable (THRESHOLD, PREVIEW_COUNT)\n- bd-2kf8: Document CompactedResult response format in CONTEXT_ENGINEERING.md\n- bd-pdr2: Document backwards compatibility considerations\n\n---\n\n## Overall Assessment\n\nBoth PRs are production-ready with solid implementations. All critical functionality works and tests pass. Followup issues focus on:\n1. Documentation improvements (5 issues)\n2. Integration test coverage (1 issue)\n3. Configuration flexibility (1 issue)\n4. Backwards compatibility guidance (1 issue)\n\nNo critical bugs or design issues found.\n\n## Review Completed By\nCode review process completed. Issues auto-created for tracking improvements.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:59.214886-08:00","updated_at":"2025-12-14T14:25:59.214886-08:00","dependencies":[{"issue_id":"bd-4uoc","depends_on_id":"bd-otf4","type":"discovered-from","created_at":"2025-12-14T14:25:59.216884-08:00","created_by":"stevey"},{"issue_id":"bd-4uoc","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:59.217296-08:00","created_by":"stevey"}]} -{"id":"bd-lxzx","title":"Add close_reason to JSONL export format documentation","description":"PR #551 now persists close_reason to the database, but there's a question about whether this field should be exported to JSONL format.\n\n## Current State\n- close_reason is stored in issues.close_reason column\n- close_reason is also stored in events table (audit trail)\n- The JSONL export format may or may not include close_reason\n\n## Questions\n1. Should close_reason be exported to JSONL format?\n2. If yes, where should it go (root level or nested in events)?\n3. Should there be any special handling to avoid duplication?\n4. How should close_reason be handled during JSONL import?\n\n## Why This Matters\n- JSONL is the git-friendly sync format\n- Other beads instances import from JSONL\n- close_reason is meaningful data that should be preserved across clones\n\n## Suggested Action\n- Check if close_reason is currently exported in JSONL\n- If not, add it to the export schema\n- Document the field in JSONL format spec\n- Add tests for round-trip (export -\u003e import -\u003e verify close_reason)","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:17.414916-08:00","updated_at":"2025-12-14T14:25:17.414916-08:00","dependencies":[{"issue_id":"bd-lxzx","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:17.416131-08:00","created_by":"stevey"}]} -{"id":"bd-90v","title":"bd prime: AI context loading and Claude Code integration","description":"Implement `bd prime` command and Claude Code hooks for context recovery. Hooks work with BOTH MCP server and CLI approaches - they solve the context memory problem (keeping bd workflow fresh after compaction) not the tool access problem (MCP vs CLI).","status":"open","priority":2,"issue_type":"epic","created_at":"2025-11-11T23:31:12.119012-08:00","updated_at":"2025-11-12T00:11:07.743189-08:00"} -{"id":"bd-ncwo","title":"Ghost resurrection: remote status:closed wins during git merge","description":"During bd sync, the 3-way git merge sometimes keeps remote's status:closed instead of local's status:tombstone. This causes ghost issues to resurrect even when tombstones exist.\n\nRoot cause: Git 3-way merge doesn't understand tombstone semantics. If base had closed, local changed to tombstone, and remote has closed, git might keep remote's version.\n\nThe early tombstone check in importer.go only prevents CREATION when tombstones exist in DB. But if applyDeletionsFromMerge hard-deletes the tombstones before import runs (because they're not in the merged result), the check doesn't help.\n\nPotential fixes:\n1. Make tombstones 'win' in the beads merge driver (internal/merge/merge.go)\n2. Don't hard-delete tombstones in applyDeletionsFromMerge if they're in the DB\n3. Export tombstones to a separate file that's not subject to merge\n\nGhost issues: bd-cb64c226.*, bd-cbed9619.*","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T22:01:03.56423-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-74w1","title":"Consolidate duplicate path-finding utilities (findJSONLPath, findBeadsDir, findGitRoot)","description":"Code health review found these functions defined in multiple places:\n\n- findJSONLPath() in autoflush.go:45-73 and doctor/fix/migrate.go\n- findBeadsDir() in autoimport.go:197-239 (with git worktree handling)\n- findGitRoot() in autoimport.go:242-269 (Windows path conversion)\n\nThe beads package has public FindBeadsDir() and FindJSONLPath() APIs that should be used consistently.\n\nImpact: Bug fixes need to be applied in multiple places. Git worktree handling may not be replicated everywhere.\n\nFix: Consolidate all implementations to use the beads package APIs. Remove duplicates.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-16T18:17:16.694293-08:00","updated_at":"2025-12-16T18:17:16.694293-08:00","dependencies":[{"issue_id":"bd-74w1","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.526122-08:00","created_by":"daemon"}]} -{"id":"bd-dsp","title":"Test stdin body-file","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T17:27:32.098806-08:00","updated_at":"2025-12-17T17:28:33.832749-08:00","closed_at":"2025-12-17T17:28:33.832749-08:00"} -{"id":"bd-c3u","title":"Review PR #512: clarify bd ready docs","description":"Review and merge PR #512 from aspiers. This PR clarifies what bd ready does after git pull in README.md. Simple 1-line change. URL: https://github.com/anthropics/beads/pull/512","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:15:13.405161+11:00","updated_at":"2025-12-13T07:07:29.641265-08:00","closed_at":"2025-12-13T07:07:29.641265-08:00"} -{"id":"bd-fgw3","title":"Update local installation","description":"Run install script or brew upgrade to get new version locally: curl -fsSL .../install.sh | bash","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:05.052016-08:00","updated_at":"2025-12-20T00:49:51.928221-08:00","closed_at":"2025-12-20T00:25:52.805029-08:00","dependencies":[{"issue_id":"bd-fgw3","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.248427-08:00","created_by":"daemon"},{"issue_id":"bd-fgw3","depends_on_id":"bd-si4g","type":"blocks","created_at":"2025-12-19T22:56:23.497325-08:00","created_by":"daemon"}]} -{"id":"bd-an4s","title":"Version Bump: 0.32.1","description":"Release checklist for version 0.32.1. Patch release with MCP output control params and pin field fix.","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-20T21:53:01.315592-08:00","updated_at":"2025-12-20T21:57:13.909864-08:00","closed_at":"2025-12-20T21:57:13.909864-08:00"} +{"id":"bd-14ie","title":"Work on beads-2vn: Add simple built-in beads viewer (GH#6...","description":"Work on beads-2vn: Add simple built-in beads viewer (GH#654). Add bd list --pretty with --watch flag, tree view with priority/status symbols. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:47.305831-08:00","updated_at":"2025-12-19T23:28:32.429492-08:00","closed_at":"2025-12-19T23:23:13.928323-08:00","close_reason":"Implemented --pretty flag with tree view and symbols. Tests pass."} +{"id":"bd-1slh","title":"Investigate charmbracelet-based TUI for beads","description":"Now that we've merged the create-form command (PR #603) which uses charmbracelet/huh, investigate whether beads should have a more comprehensive TUI.\n\nConsiderations:\n- Should this be in core or a separate binary (bd-tui)?\n- What functionality would benefit from a TUI? (list view, issue details, search, bulk operations)\n- Plugin/extension architecture vs build tags vs separate binary\n- Dependency cost vs user experience tradeoff\n- Target audience: humans who want interactive workflows vs CLI/scripting users\n\nRelated: PR #603 added charmbracelet/huh dependency for create-form command.","status":"open","priority":3,"issue_type":"feature","created_at":"2025-12-17T14:20:51.503563-08:00","updated_at":"2025-12-17T14:20:51.503563-08:00"} +{"id":"bd-1tw","title":"Fix G104 errors unhandled in internal/storage/sqlite/queries.go:1186","description":"Linting issue: G104: Errors unhandled (gosec) at internal/storage/sqlite/queries.go:1186:2. Error: rows.Close()","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:13.051671889-07:00","updated_at":"2025-12-17T23:13:40.53486-08:00","closed_at":"2025-12-17T16:46:11.0289-08:00"} +{"id":"bd-20j","title":"sync branch not match config","description":"./bd sync\nā†’ Exporting pending changes to JSONL...\nā†’ No changes to commit\nā†’ Pulling from sync branch 'gh-386'...\nError pulling from sync branch: failed to create worktree: failed to create worktree parent directory: mkdir /var/home/matt/dev/beads/worktree-db-fail/.git: not a directory\nmatt@blufin-framation ~/d/b/worktree-db-fail (worktree-db-fail) [1]\u003e bd config list\n\nConfiguration:\n auto_compact_enabled = false\n compact_batch_size = 50\n compact_model = claude-3-5-haiku-20241022\n compact_parallel_workers = 5\n compact_tier1_days = 30\n compact_tier1_dep_levels = 2\n compact_tier2_commits = 100\n compact_tier2_days = 90\n compact_tier2_dep_levels = 5\n compaction_enabled = false\n issue_prefix = worktree-db-fail\n sync.branch = worktree-db-fail","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-08T06:49:04.449094018-07:00","updated_at":"2025-12-08T06:49:04.449094018-07:00"} +{"id":"bd-28db","title":"Add 'bd status' command for issue database overview","description":"Implement a bd status command that provides a quick snapshot of the issue database state, similar to how git status shows working tree state.\n\nExpected output: Show summary including counts by state (open, in-progress, blocked, closed), recent activity (last 7 days), and quick overview without needing multiple queries.\n\nExample output showing issue counts, recent activity stats, and pointer to bd list for details.\n\nProposed options: --all (show all issues), --assigned (show issues assigned to current user), --json (JSON format output)\n\nUse cases: Quick project health check, onboarding for new contributors, integration with shell prompts or CI/CD, daily standup reference","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-02T17:25:59.203549-08:00","updated_at":"2025-11-02T17:25:59.203549-08:00"} +{"id":"bd-2ep8","title":"Update CHANGELOG.md with release notes","description":"Add meaningful release notes to CHANGELOG.md describing what changed in 0.30.7","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649053-08:00","updated_at":"2025-12-19T22:57:31.69559-08:00","closed_at":"2025-12-19T22:57:31.69559-08:00","dependencies":[{"issue_id":"bd-2ep8","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.650816-08:00","created_by":"stevey"},{"issue_id":"bd-2ep8","depends_on_id":"bd-rupw","type":"blocks","created_at":"2025-12-19T22:56:48.651136-08:00","created_by":"stevey"}]} +{"id":"bd-2oo","title":"Edge Schema Consolidation: Unify all edges in dependencies table","description":"Consolidate all edge types into the dependency table per decision 004.\n\n## Changes\n- Add metadata column to dependencies table\n- Add thread_id column for conversation grouping\n- Remove redundant Issue fields: replies_to, relates_to, duplicate_of, superseded_by\n- Update all code to use dependencies API\n- Migration script for existing data\n- JSONL format change (breaking)\n\nReference: ~/gt/hop/decisions/004-edge-schema-consolidation.md","status":"closed","issue_type":"epic","created_at":"2025-12-18T02:01:48.785558-08:00","updated_at":"2025-12-18T02:49:10.61237-08:00","closed_at":"2025-12-18T02:49:10.61237-08:00","close_reason":"Phase 4 complete: all edge fields removed, dependencies API used exclusively"} +{"id":"bd-2oo.1","title":"Add metadata and thread_id columns to dependencies table","description":"Schema changes:\n- ALTER TABLE dependencies ADD COLUMN metadata TEXT DEFAULT '{}'\n- ALTER TABLE dependencies ADD COLUMN thread_id TEXT DEFAULT ''\n- CREATE INDEX idx_dependencies_thread ON dependencies(thread_id) WHERE thread_id != ''","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:00.468223-08:00","updated_at":"2025-12-18T02:49:10.575133-08:00","closed_at":"2025-12-18T02:49:10.575133-08:00","close_reason":"Phase 4 complete: all edge fields removed, dependencies API used exclusively","dependencies":[{"issue_id":"bd-2oo.1","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:00.470012-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-2oo.2","title":"Remove redundant edge fields from Issue struct","description":"Remove from Issue struct:\n- RepliesTo -\u003e dependency with type replies-to\n- RelatesTo -\u003e dependencies with type relates-to \n- DuplicateOf -\u003e dependency with type duplicates\n- SupersededBy -\u003e dependency with type supersedes\n\nKeep: Sender, Ephemeral (these are attributes, not relationships)","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:00.891206-08:00","updated_at":"2025-12-18T02:49:10.584381-08:00","closed_at":"2025-12-18T02:49:10.584381-08:00","close_reason":"Phase 4 complete: all edge fields removed, dependencies API used exclusively","dependencies":[{"issue_id":"bd-2oo.2","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:00.891655-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-2oo.3","title":"Update all code to use dependencies API for edges","description":"Find and update all code that reads/writes:\n- replies_to field -\u003e use dependency API\n- relates_to field -\u003e use dependency API\n- duplicate_of field -\u003e use dependency API\n- superseded_by field -\u003e use dependency API\n\nCommands affected: bd mail, bd relate, bd duplicate, bd supersede, bd show, etc.","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:01.317006-08:00","updated_at":"2025-12-18T02:49:10.59233-08:00","closed_at":"2025-12-18T02:49:10.59233-08:00","close_reason":"Phase 4 complete: all edge fields removed, dependencies API used exclusively","dependencies":[{"issue_id":"bd-2oo.3","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:01.31856-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-2oo.4","title":"Create migration script for edge field to dependency conversion","description":"Migration must:\n1. Read existing JSONL with old fields\n2. Convert field values to dependency records\n3. Write updated JSONL without old fields\n4. Handle edge cases (missing refs, duplicates)\n\nRun via: bd migrate or automatic on bd prime","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:01.760277-08:00","updated_at":"2025-12-18T02:49:10.602446-08:00","closed_at":"2025-12-18T02:49:10.602446-08:00","close_reason":"Phase 4 complete: all edge fields removed, dependencies API used exclusively","dependencies":[{"issue_id":"bd-2oo.4","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:01.760694-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-2q6d","title":"Beads commands operate on stale database without warning","description":"All beads read operations should validate database is in sync with JSONL before proceeding.\n\n**Current Behavior:**\n- Commands can query/read from stale database\n- Only mutation operations (like 'bd sync') check if JSONL is newer\n- User gets incorrect results without realizing database is out of sync\n\n**Expected Behavior:**\n- All beads commands should have pre-flight check for database freshness\n- If JSONL is newer than database, refuse to operate with error: \"Database out of sync. Run 'bd import' first.\"\n- Same safety check that exists for 'bd sync' should apply to ALL operations\n\n**Impact:**\n- Users make decisions based on incomplete/outdated data\n- Silent failures lead to confusion (e.g., thinking issues don't exist when they do)\n- Similar to running git commands on stale repo without being warned to pull\n\n**Example:**\n- Searched for bd-g9eu issue file: not found\n- Issue exists in .beads/issues.jsonl (in git)\n- Database was stale, but no warning was given\n- Led to incorrect conclusion that issue was already closed/deleted","notes":"## Implementation Complete\n\n**Phase 1: Created staleness check (cmd/bd/staleness.go)**\n- ensureDatabaseFresh() function checks JSONL mtime vs last_import_time\n- Returns error with helpful message when database is stale\n- Auto-skips in daemon mode (daemon has auto-import)\n\n**Phase 2: Added to all read commands**\n- list, show, ready, status, stale, info, duplicates, validate\n- Check runs before database queries in direct mode\n- Daemon mode already protected via checkAndAutoImportIfStale()\n\n**Phase 3: Code Review Findings**\nSee follow-up issues:\n- bd-XXXX: Add warning when staleness check errors\n- bd-YYYY: Improve CheckStaleness error handling\n- bd-ZZZZ: Refactor redundant daemon checks (low priority)\n\n**Testing:**\n- Build successful: go build ./cmd/bd\n- Binary works: ./bd --version\n- Ready for manual testing\n\n**Next Steps:**\n1. Test with stale database scenario\n2. Implement review improvements\n3. Close issue when tests pass","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-20T19:33:40.019297-05:00","updated_at":"2025-12-17T23:13:40.535149-08:00","closed_at":"2025-12-17T19:11:12.982639-08:00"} +{"id":"bd-2vh3","title":"Ephemeral issue cleanup and history compaction","description":"## Problem\n\nBeads history grows without bound. Every message, handoff, work assignment\nstays in issues.jsonl forever. Enterprise users will balk at \"git as database.\"\n\n## Solution: Two-Tier Cleanup\n\n### Tier 1: Ephemeral Cleanup (v1)\n\nbd cleanup --ephemeral --closed\n\n- Deletes closed issues where ephemeral=true from issues.jsonl\n- Safe: only removes explicitly marked ephemeral + closed\n- Preserves git history (commits still exist)\n- Run after swarm completion\n\n### Tier 2: History Compaction (v2)\n\nbd compact --squash\n\n- Rewrites issues.jsonl to remove tombstones\n- Optionally squashes git history (interactive rebase equivalent)\n- Preserves Merkle proofs for deleted items\n- Advanced: cold storage tiering\n\n## HOP Context\n\n| Layer | HOP Role | Persistence |\n|-------|----------|-------------|\n| Execution trace | None | Ephemeral |\n| Work scaffolding | None | Summarizable |\n| Work outcome | CV entry | Permanent |\n| Validation record | Stake proof | Permanent |\n\n\"Execution is ephemeral. Outcomes are permanent. You can't squash your CV.\"\n\n## Success Criteria\n\n- After cleanup --ephemeral: issues.jsonl only contains persistent work\n- Work outcomes preserved (CV entries)\n- Validation records preserved (stake proofs)\n- Execution scaffolding removed (transient coordination)","status":"open","priority":1,"issue_type":"feature","created_at":"2025-12-20T21:02:20.101367-08:00","updated_at":"2025-12-20T21:02:20.101367-08:00"} +{"id":"bd-2wh","title":"Test pinned for stats","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-18T21:47:09.334108-08:00","updated_at":"2025-12-18T21:47:25.17917-08:00","deleted_at":"2025-12-18T21:47:25.17917-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-379","title":"Implement `bd setup cursor` for Cursor IDE integration","description":"Create a `bd setup cursor` command that integrates Beads workflow into Cursor IDE via .cursorrules file. Unlike Claude Code (which has hooks), Cursor uses a static rules file to provide context to its AI.","status":"open","priority":3,"issue_type":"feature","created_at":"2025-11-11T23:32:22.170083-08:00","updated_at":"2025-11-11T23:32:22.170083-08:00"} +{"id":"bd-3852","title":"Add orphan detection migration","description":"Create migration to detect orphaned children in existing databases. Query: SELECT id FROM issues WHERE id LIKE '%.%' AND substr(id, 1, instr(id || '.', '.') - 1) NOT IN (SELECT id FROM issues). Log results, let user decide action (delete orphans or convert to top-level).","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-04T12:32:30.727044-08:00","updated_at":"2025-11-04T12:32:30.727044-08:00"} +{"id":"bd-3ggb","title":"Rebuild local binary","description":"Build and verify: go build -o bd ./cmd/bd \u0026\u0026 ./bd version","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:03.101428-08:00","updated_at":"2025-12-18T22:46:40.955673-08:00","closed_at":"2025-12-18T22:46:40.955673-08:00","dependencies":[{"issue_id":"bd-3ggb","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.748289-08:00","created_by":"daemon"},{"issue_id":"bd-3ggb","depends_on_id":"bd-4y4g","type":"blocks","created_at":"2025-12-18T22:43:20.950376-08:00","created_by":"daemon"}]} +{"id":"bd-3sz0","title":"Auto-repair stale merge driver configs with invalid placeholders","description":"Old bd versions (\u003c0.24.0) installed merge driver with invalid placeholders %L %R instead of %A %B. Add detection to bd doctor --fix: check if git config merge.beads.driver contains %L or %R, auto-repair to 'bd merge %A %O %A %B'. One-time migration for users who initialized with old versions.","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-21T23:16:10.762808-08:00","updated_at":"2025-11-21T23:16:28.892655-08:00","dependencies":[{"issue_id":"bd-3sz0","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:10.763612-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-3x9o","title":"Merge: bd-by0d","description":"branch: polecat/furiosa\ntarget: main\nsource_issue: bd-by0d\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:21:26.817906-08:00","updated_at":"2025-12-19T23:21:26.817906-08:00"} +{"id":"bd-401h","title":"Work on beads-7jl: Fix Windows installer file locking iss...","description":"Work on beads-7jl: Fix Windows installer file locking issue (GH#652). Close file handle before extraction in postinstall.js. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","assignee":"beads/rictus","created_at":"2025-12-19T22:55:57.873767-08:00","updated_at":"2025-12-19T23:20:05.747664-08:00","closed_at":"2025-12-19T23:20:05.747664-08:00","close_reason":"Fixed file handle closure race condition in postinstall.js"} +{"id":"bd-411u","title":"Document BEADS_DIR pattern for multi-agent workspaces (Gas Town)","description":"Gas Town and similar multi-agent systems need to configure separate beads databases per workspace/rig, distinct from any project-level beads.\n\n## Use Case\n\nIn Gas Town:\n- Each 'rig' (managed project) has multiple agents (polecats, refinery, witness)\n- All agents in a rig should share a single beads database at the rig level\n- This should be separate from any .beads/ the project itself uses\n- The BEADS_DIR env var enables this\n\n## Documentation Needed\n\n1. Add a section to docs explaining BEADS_DIR for multi-agent setups\n2. Example: setting BEADS_DIR in agent startup scripts/hooks\n3. Clarify interaction with project-level .beads/ (BEADS_DIR takes precedence)\n\n## Current Support\n\nAlready implemented in internal/beads/beads.go:FindDatabasePath():\n- BEADS_DIR env var is checked first (preferred)\n- BEADS_DB env var still supported (deprecated)\n- Falls back to .beads/ search in tree\n\nJust needs documentation for the multi-agent workspace pattern.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-15T22:08:22.158027-08:00","updated_at":"2025-12-15T22:08:22.158027-08:00"} +{"id":"bd-47tn","title":"Add bd daemon --stop-all command to kill all daemon processes","description":"Currently there's no easy way to stop all running bd daemon processes. Users must resort to pkill -f 'bd daemon' or similar shell commands.\n\nAdd a --stop-all flag to bd daemon that:\n1. Finds all running bd daemon processes (not just the current repo's daemon)\n2. Gracefully stops them all\n3. Reports how many were stopped\n\nThis is useful when:\n- Multiple daemons are running and causing race conditions\n- User wants a clean slate before running bd sync\n- Debugging daemon-related issues","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-13T06:34:45.080633-08:00","updated_at":"2025-12-16T01:14:49.501989-08:00","closed_at":"2025-12-14T17:33:03.057089-08:00"} {"id":"bd-49kw","title":"Workaround for FastMCP outputSchema bug in Claude Code","description":"The beads MCP server (v0.23.1) successfully connects to Claude Code, but all tools fail to load with a schema validation error due to a bug in FastMCP 2.13.1.\n\nError: \"Invalid literal value, expected \\\"object\\\"\" in outputSchema.\n\nRoot Cause: FastMCP generates outputSchema with $ref at root level without \"type\": \"object\" for self-referential models (Issue).\n\nWorkaround: Use slash commands (/beads:ready) or wait for FastMCP fix.\n","status":"open","priority":1,"issue_type":"bug","created_at":"2025-11-20T18:55:39.041831-05:00","updated_at":"2025-11-20T18:55:39.041831-05:00"} -{"id":"bd-7di","title":"worktree: any bd command is slow","description":"in a git worktree any bd command is slow, with a 2-3s pause before any results are shown. The identical command with `--no-daemon` is near instant.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-05T15:33:42.924618693-07:00","updated_at":"2025-12-05T15:33:42.924618693-07:00"} -{"id":"bd-y8bj","title":"Auto-detect identity from directory context for bd mail","description":"Currently bd mail inbox defaults to git user name, requiring --identity flag with exact format.\n\n## Problem\n- Mail sent to `gastown/crew/max`\n- Max runs `bd mail inbox` ā†’ defaults to 'Steve Yegge' (git user)\n- Max must know to use `--identity 'gastown/crew/max'` with exact slashes\n\n## Proposed Fix\nAuto-detect identity from directory context when in a Gas Town workspace:\n- In `/Users/stevey/gt/gastown/crew/max`, infer identity = `gastown/crew/max`\n- Pattern: `\u003ctown\u003e/\u003crig\u003e/\u003crole\u003e/\u003cname\u003e` ā†’ `\u003crig\u003e/\u003crole\u003e/\u003cname\u003e`\n\n## Additional Improvements\n1. Support GT_IDENTITY env var (set by gt crew at / session spawning)\n2. Support identity in .beads/config.yaml\n3. Normalize format: accept both slashes and dashes as equivalent\n\n## Context\nDiscovered during crew-to-crew work assignment. Max couldn't see mail despite correct nudge because identity defaulted wrong.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-20T17:22:53.938586-08:00","updated_at":"2025-12-20T18:12:58.472262-08:00","closed_at":"2025-12-20T17:58:51.034201-08:00"} -{"id":"bd-aydr.3","title":"Add git operations for --hard reset","description":"Implement git integration for hard reset mode.\n\n## Operations Needed\n1. `git rm -rf .beads/*.jsonl` - remove data files from index\n2. `git commit -m 'beads: reset to clean state'` - commit removal\n3. After re-init: `git add .beads/` and commit fresh state\n\n## Edge Cases to Handle\n- Uncommitted changes in .beads/ - warn or error\n- Detached HEAD state - warn, maybe block\n- Git not initialized - skip git ops, warn\n- Git operations fail mid-way - clear error messaging\n\n## Interface\n```go\ntype GitState struct {\n IsRepo bool\n IsDirty bool // uncommitted changes in .beads/\n IsDetached bool // detached HEAD\n Branch string // current branch name\n}\n\nfunc CheckGitState(beadsDir string) (*GitState, error)\nfunc GitRemoveBeads(beadsDir string) error\nfunc GitCommitReset(message string) error\nfunc GitAddAndCommit(beadsDir, message string) error\n```\n\n## Location\n`internal/reset/git.go` - keep with reset package for now\n\nNote: Codebase has no central git package. internal/compact/git.go is compact-specific.\nFuture refactoring could extract shared git utilities, but YAGNI for now.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:52.798312+11:00","updated_at":"2025-12-13T10:13:32.611131+11:00","closed_at":"2025-12-13T09:17:40.785927+11:00","dependencies":[{"issue_id":"bd-aydr.3","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:52.798715+11:00","created_by":"daemon"}]} -{"id":"bd-x3j8","title":"Update info.go versionChanges","description":"Add 0.32.1 entry to versionChanges map in cmd/bd/info.go","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:17.344841-08:00","updated_at":"2025-12-20T21:54:31.906761-08:00","closed_at":"2025-12-20T21:54:31.906761-08:00","dependencies":[{"issue_id":"bd-x3j8","depends_on_id":"bd-rgd7","type":"blocks","created_at":"2025-12-20T21:53:29.62309-08:00","created_by":"daemon"},{"issue_id":"bd-x3j8","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:17.346736-08:00","created_by":"daemon"}]} +{"id":"bd-4ec8","title":"Widespread double JSON encoding bug in daemon mode RPC calls","description":"Multiple CLI commands had the same double JSON encoding bug found in bd-1048. All commands that called ResolveID via RPC used string(resp.Data) instead of properly unmarshaling the JSON response. This caused IDs to retain JSON quotes (\"bd-1048\" instead of bd-1048), which then got double-encoded when passed to subsequent RPC calls.\n\nAffected commands:\n- bd show (3 instances)\n- bd dep add/remove/tree (5 instances)\n- bd label add/remove/list (3 instances)\n- bd reopen (1 instance)\n\nRoot cause: resp.Data is json.RawMessage (already JSON-encoded), so string() conversion preserves quotes.\n\nFix: Replace all string(resp.Data) with json.Unmarshal(resp.Data, \u0026id) for proper deserialization.\n\nAll commands now tested and working correctly with daemon mode.","status":"closed","issue_type":"bug","created_at":"2025-11-02T22:33:01.632691-08:00","updated_at":"2025-12-17T23:13:40.533631-08:00","closed_at":"2025-12-17T16:26:05.851197-08:00"} +{"id":"bd-4hn","title":"wish: list \u0026 ready show issues as hierarchy tree","description":"`bd ready` and `bd list` just show a flat list, and it's up to the reader to parse which ones are dependent or sub-issues of others. It would be much easier to understand if they were shown in a tree format","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-08T06:38:24.016316945-07:00","updated_at":"2025-12-08T06:39:04.065882225-07:00"} +{"id":"bd-4lm3","title":"Correction: Pinned field already in v0.31.0","description":"Quick correction - the Pinned field is already in the current bd v0.31.0:\n\n```go\n// In beads internal/types/types.go\nPinned bool `json:\"pinned,omitempty\"`\n```\n\nSo you just need to:\n1. Add `Pinned bool `json:\"pinned,omitempty\"`` to BeadsMessage in types.go\n2. Sort pinned messages first in listBeads() after fetching\n\nNo migration needed - the field is already there.\n\n-- Mayor","status":"open","priority":2,"issue_type":"message","assignee":"gastown/crew/max","created_at":"2025-12-20T17:52:27.321458-08:00","updated_at":"2025-12-20T17:52:27.321458-08:00","labels":["from:beads-crew-dave","thread:thread-4dd70157dbc1"]} +{"id":"bd-4nqq","title":"Remove dead test code in info_test.go","description":"Code health review found cmd/bd/info_test.go has two tests permanently skipped:\n\n- TestInfoCommand\n- TestInfoCommandNoDaemon\n\nBoth skip with: 'Manual test - bd info command is working, see manual testing'\n\nThese are essentially dead code. Either automate them or remove them entirely.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:27.554019-08:00","updated_at":"2025-12-16T18:17:27.554019-08:00","dependencies":[{"issue_id":"bd-4nqq","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.381694-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-4q8","title":"bd cleanup --hard should skip tombstone creation for true permanent deletion","description":"## Problem\n\nWhen using bd cleanup --hard --older-than N --force, the command:\n1. Deletes closed issues older than N days (converting them to tombstones with NOW timestamp)\n2. Then tries to prune tombstones older than N days (finds none because they were just created)\n\nThis leaves the database bloated with fresh tombstones that will not be pruned.\n\n## Expected Behavior\n\nIn --hard mode, the deletion should be permanent without creating tombstones, since the user explicitly requested bypassing sync safety.\n\n## Workaround\n\nManually delete from database: sqlite3 .beads/beads.db 'DELETE FROM issues WHERE status=tombstone'\n\n## Fix Options\n\n1. In --hard mode, use a different delete path that does not create tombstones\n2. After deleting, immediately prune the just-created tombstones regardless of age\n3. Pass a skip_tombstone flag to the delete operation\n\nOption 1 is cleanest - --hard should mean permanent delete without tombstone.","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T01:33:36.580657-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-4qfb","title":"Improve bd doctor output formatting for better readability","description":"The current bd doctor output is a wall of text that's hard to process. Consider improvements like:\n- Grouping related checks into collapsible sections\n- Using color/bold for section headers\n- Showing only failures/warnings by default with --verbose for full output\n- Better visual hierarchy between major sections\n- Summary line at top (e.g., '24 checks passed, 0 warnings, 0 errors')","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T09:29:27.557578+11:00","updated_at":"2025-12-13T09:29:27.557578+11:00"} -{"id":"bd-su45","title":"Protect pinned issues from bd cleanup/compact","description":"Update bd cleanup and bd compact to never delete pinned issues, even if they are closed. Pinned issues should persist indefinitely as reference material.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:46.204783-08:00","updated_at":"2025-12-19T17:43:35.712617-08:00","closed_at":"2025-12-19T00:43:04.06406-08:00","dependencies":[{"issue_id":"bd-su45","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.64582-08:00","created_by":"daemon"},{"issue_id":"bd-su45","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.857586-08:00","created_by":"daemon"}]} -{"id":"bd-pbh.5","title":"Update .claude-plugin/marketplace.json to 0.30.4","description":"Update version field in .claude-plugin/marketplace.json:\n```json\n\"version\": \"0.30.4\"\n```\n\n\n```verify\njq -e '.plugins[0].version == \"0.30.4\"' .claude-plugin/marketplace.json\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.985619-08:00","updated_at":"2025-12-17T21:46:46.239122-08:00","closed_at":"2025-12-17T21:46:46.239122-08:00","dependencies":[{"issue_id":"bd-pbh.5","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.985942-08:00","created_by":"daemon"}]} -{"id":"bd-8hy","title":"Kill running daemons","description":"Stop all bd daemons before release:\n\n```bash\npkill -f 'bd.*daemon' || true\nsleep 1\npgrep -lf 'bd.*daemon' # Should show nothing\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:58.255478-08:00","updated_at":"2025-12-18T22:43:55.394966-08:00","closed_at":"2025-12-18T22:43:55.394966-08:00","dependencies":[{"issue_id":"bd-8hy","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.23168-08:00","created_by":"daemon"}]} +{"id":"bd-4ri","title":"Fix TestFallbackToDirectModeEnablesFlush deadlock causing 10min test timeout","description":"## Problem\n\nTestFallbackToDirectModeEnablesFlush in direct_mode_test.go deadlocks for 9m59s before timing out, causing the entire test suite to take 10+ minutes instead of \u003c10 seconds.\n\n## Root Cause\n\nDatabase lock contention between test cleanup and flushToJSONL():\n- Test cleanup (line 36) tries to close DB via defer\n- flushToJSONL() (line 132) is still accessing DB\n- Results in deadlock: database/sql.(*DB).Close() waits for mutex while GetJSONLFileHash() holds it\n\n## Stack Trace Evidence\n\n```\ngoroutine 512 [sync.Mutex.Lock, 9 minutes]:\ndatabase/sql.(*DB).Close(0x14000643790)\n .../database/sql/sql.go:927 +0x84\ngithub.com/steveyegge/beads/cmd/bd.TestFallbackToDirectModeEnablesFlush.func1()\n .../direct_mode_test.go:36 +0xf4\n\nWhile goroutine running flushToJSONL() holds DB connection via GetJSONLFileHash()\n```\n\n## Impact\n\n- Test suite: 10+ minutes ā†’ should be \u003c10 seconds\n- ALL other tests pass in ~4 seconds\n- This ONE test accounts for 99.9% of test runtime\n\n## Related\n\nThis is the EXACT same issue documented in MAIN_TEST_REFACTOR_NOTES.md for why main_test.go refactoring was deferred - global state manipulation + DB cleanup = deadlock.\n\n## Fix Approaches\n\n1. **Add proper cleanup sequencing** - stop flush goroutines BEFORE closing DB\n2. **Use test-specific DB lifecycle** - ensure flush completes before cleanup\n3. **Mock the flush mechanism** - avoid real DB for testing this code path \n4. **Add explicit timeout handling** - fail fast with clear error instead of hanging\n\n## Files\n\n- cmd/bd/direct_mode_test.go:36-132\n- cmd/bd/autoflush.go:353 (validateJSONLIntegrity)\n- cmd/bd/autoflush.go:508 (flushToJSONLWithState)\n\n## Acceptance\n\n- Test passes without timeout\n- Test suite completes in \u003c10 seconds\n- No deadlock between cleanup and flush operations","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-21T20:09:00.794372-05:00","updated_at":"2025-12-17T23:13:40.533279-08:00","closed_at":"2025-12-17T17:25:07.626617-08:00"} +{"id":"bd-4sfl","title":"Merge: bd-14ie","description":"branch: polecat/toast\ntarget: main\nsource_issue: bd-14ie\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:23:37.360782-08:00","updated_at":"2025-12-19T23:23:37.360782-08:00"} +{"id":"bd-4uoc","title":"Code Review Followup Summary: PR #481 + PR #551","description":"## Merged PRs Summary\n\n### PR #551: Persist close_reason to issues table\n- āœ… Merged successfully\n- āœ… Bug fix: close_reason now persisted in database column (not just events table)\n- āœ… Comprehensive test coverage added\n- āœ… Handles reopen case (clearing close_reason)\n\n**Followup Issues Filed:**\n- bd-lxzx: Document close_reason in JSONL export format\n- bd-077e: Update CLI documentation for close_reason field\n\n---\n\n### PR #481: Context Engineering Optimizations (80-90% context reduction)\n- āœ… Merged successfully \n- āœ… Lazy tool discovery: discover_tools() + get_tool_info()\n- āœ… Minimal issue models: IssueMinimal (~80% smaller than full Issue)\n- āœ… Result compaction: Auto-compacts results \u003e20 items\n- āœ… All 28 tests passing\n- āš ļø Breaking change: ready() and list() return type changed\n\n**Followup Issues Filed:**\n- bd-b318: Add integration tests for CompactedResult\n- bd-4u2b: Make compaction settings configurable (THRESHOLD, PREVIEW_COUNT)\n- bd-2kf8: Document CompactedResult response format in CONTEXT_ENGINEERING.md\n- bd-pdr2: Document backwards compatibility considerations\n\n---\n\n## Overall Assessment\n\nBoth PRs are production-ready with solid implementations. All critical functionality works and tests pass. Followup issues focus on:\n1. Documentation improvements (5 issues)\n2. Integration test coverage (1 issue)\n3. Configuration flexibility (1 issue)\n4. Backwards compatibility guidance (1 issue)\n\nNo critical bugs or design issues found.\n\n## Review Completed By\nCode review process completed. Issues auto-created for tracking improvements.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:59.214886-08:00","updated_at":"2025-12-14T14:25:59.214886-08:00","dependencies":[{"issue_id":"bd-4uoc","depends_on_id":"bd-otf4","type":"discovered-from","created_at":"2025-12-14T14:25:59.216884-08:00","created_by":"stevey","metadata":"{}"},{"issue_id":"bd-4uoc","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:59.217296-08:00","created_by":"stevey","metadata":"{}"}]} +{"id":"bd-4y4g","title":"Bump version in all files","description":"Run ./scripts/bump-version.sh {{version}} to update 10 version files. Then run with --commit after info.go is updated.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:01.859728-08:00","updated_at":"2025-12-18T22:46:24.537336-08:00","closed_at":"2025-12-18T22:46:24.537336-08:00","dependencies":[{"issue_id":"bd-4y4g","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.623724-08:00","created_by":"daemon"},{"issue_id":"bd-4y4g","depends_on_id":"bd-8v2","type":"blocks","created_at":"2025-12-18T22:43:20.823329-08:00","created_by":"daemon"}]} {"id":"bd-56x","title":"Review PR #514: fix plugin install docs","description":"Review and merge PR #514 from aspiers. This PR fixes incorrect docs for installing Claude Code plugin from source in docs/PLUGIN.md. Clarifies shell vs Claude Code commands and fixes the . vs ./beads argument issue. URL: https://github.com/anthropics/beads/pull/514","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:15:16.865354+11:00","updated_at":"2025-12-13T07:07:19.729213-08:00","closed_at":"2025-12-13T07:07:19.729213-08:00"} -{"id":"bd-cbed9619.4","title":"Make DetectCollisions read-only (separate detection from modification)","description":"**Summary:** The project restructured the collision detection process in the database to separate read-only detection from state modification, eliminating race conditions and improving system reliability. This was achieved by introducing a two-phase approach: first detecting potential collisions, then applying resolution separately.\n\n**Key Decisions:**\n- Create read-only DetectCollisions method\n- Add RenameDetail to track potential issue renames\n- Implement atomic ApplyCollisionResolution function\n- Separate detection logic from database modification\n\n**Resolution:** The refactoring creates a more robust, composable collision handling mechanism that prevents partial failures and maintains database consistency during complex issue import scenarios.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:37:09.652326-07:00","updated_at":"2025-12-17T23:18:29.112637-08:00","dependencies":[{"issue_id":"bd-cbed9619.4","depends_on_id":"bd-cbed9619.5","type":"blocks","created_at":"2025-10-28T18:39:28.285653-07:00","created_by":"daemon"}],"deleted_at":"2025-12-17T23:18:29.112637-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-2oo.2","title":"Remove redundant edge fields from Issue struct","description":"Remove from Issue struct:\n- RepliesTo -\u003e dependency with type replies-to\n- RelatesTo -\u003e dependencies with type relates-to \n- DuplicateOf -\u003e dependency with type duplicates\n- SupersededBy -\u003e dependency with type supersedes\n\nKeep: Sender, Ephemeral (these are attributes, not relationships)","status":"closed","issue_type":"task","created_at":"2025-12-18T02:02:00.891206-08:00","updated_at":"2025-12-18T02:49:10.584381-08:00","closed_at":"2025-12-18T02:49:10.584381-08:00","dependencies":[{"issue_id":"bd-2oo.2","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:00.891655-08:00","created_by":"daemon"}]} -{"id":"bd-in7","title":"Test message","description":"Hello world","status":"closed","priority":2,"issue_type":"message","created_at":"2025-12-17T23:16:13.184946-08:00","updated_at":"2025-12-18T17:42:26.000073-08:00","closed_at":"2025-12-17T23:37:38.563369-08:00"} +{"id":"bd-581b80b3","title":"bd find-duplicates - AI-powered duplicate detection","description":"Find semantically duplicate issues.\n\nApproaches:\n1. Mechanical: Exact title/description matching\n2. Embeddings: Cosine similarity (cheap, scalable)\n3. AI: LLM-based semantic comparison (expensive, accurate)\n\nUses embeddings by default for \u003e100 issues.\n\nFiles: cmd/bd/find_duplicates.go (new)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-10-29T20:49:49.126801-07:00","updated_at":"2025-12-17T22:58:34.563511-08:00","closed_at":"2025-12-17T22:58:34.563511-08:00","close_reason":"Closed"} +{"id":"bd-589x","title":"HANDOFF: Version 0.30.7 release in progress","description":"## Context\nDoing a 0.30.7 patch release with bug fixes.\n\n## What's done\n- Fixed #657: bd graph nil pointer crash (graph.go:102)\n- Fixed #652: Windows npm installer file lock (postinstall.js)\n- Updated CHANGELOG.md and info.go\n- Pushed to main, CI running (run 20390861825)\n- Created version-bump molecule template (bd-6s61) and instantiated for 0.30.7 (bd-8pyn)\n\n## In progress\nMolecule bd-8pyn has 3 remaining tasks:\n - bd-dxo7: Wait for CI to pass\n - bd-7l70: Verify release artifacts \n - bd-5c91: Update local installation\n\n## Check CI\n gh run list --repo steveyegge/beads --limit 1\n gh run view 20390861825 --repo steveyegge/beads\n\n## New feature filed\nbd-n777: Timer beads for scheduled agent callbacks\nDesign for Deacon-managed timers that can interrupt agents via tmux\n\n## Resume commands\n bd --no-daemon show bd-8pyn\n gh run list --repo steveyegge/beads --limit 1","status":"closed","priority":2,"issue_type":"message","assignee":"beads/dave","created_at":"2025-12-19T23:06:14.902334-08:00","updated_at":"2025-12-20T00:49:51.927111-08:00","closed_at":"2025-12-20T00:25:59.596546-08:00"} +{"id":"bd-5b6e","title":"Add tests for helper functions (GetDirtyIssueHash, GetAllDependencyRecords, export hashes)","description":"Several utility functions have 0% coverage:\n- GetDirtyIssueHash (dirty.go)\n- GetAllDependencyRecords (dependencies.go)\n- GetExportHash, SetExportHash, ClearAllExportHashes (hash.go)\n\nThese are lower priority but should have basic coverage.","status":"open","priority":4,"issue_type":"task","created_at":"2025-11-01T22:40:58.989976-07:00","updated_at":"2025-11-01T22:40:58.989976-07:00"} +{"id":"bd-5qim","title":"Optimize GetReadyWork performance - 752ms on 10K database (target: \u003c50ms)","notes":"# Performance Analysis (10K Issue Database)\n\nAnalyzed using CPU profiles from benchmark suite on Apple M2 Pro.\n\n## Operation Performance\n\n| Operation | Time | Allocations | Memory |\n|----------------------------------|---------|-------------|--------|\n| bd ready (GetReadyWork) | ~752ms | 167,466 | 16MB |\n| bd list (SearchIssues no filter) | ~11.6ms | 89,214 | 5.8MB |\n| bd list (SearchIssues filtered) | ~9.2ms | 62,365 | 3.5MB |\n| bd create (CreateIssue) | ~2.6ms | 146 | 8.6KB |\n| bd update (UpdateIssue) | ~0.32ms | 364 | 15KB |\n| bd close (UpdateIssue) | ~0.32ms | 364 | 15KB |\n\n**Target: \u003c50ms for all operations on 10K database**\n\n**Current issue: GetReadyWork is 15x over target (752ms vs 50ms)**\n\n## Root Cause\n\nGetReadyWork (internal/storage/sqlite/ready.go:90-128) uses recursive CTE to propagate blocking:\n- 65x slower than SearchIssues\n- Recalculates entire blocked issue tree on every call\n- Algorithm:\n 1. Find directly blocked issues via 'blocks' dependencies\n 2. Recursively propagate blockage to descendants (max depth: 50)\n 3. Exclude all blocked issues from results\n\n## CPU Profile Analysis\n\n- Database syscalls (pthread_cond_signal, syscall6): ~75%\n- SQLite engine overhead: inherent to recursive CTE\n- Application code (query construction): \u003c1%\n\n**Bottleneck is the recursive CTE query execution, not application code.**\n\n## Optimization Recommendations\n\n### High Impact (Likely to achieve \u003c50ms target)\n\n1. **Cache blocked issue calculation**\n - Add `blocked_issues` table updated on dependency changes\n - Trade write complexity for read speed (ready called \u003e\u003e dependency changes)\n - Eliminates recursive CTE on every read\n\n2. **Add/verify database indexes**\n ```sql\n CREATE INDEX IF NOT EXISTS idx_dependencies_blocked \n ON dependencies(issue_id, type, depends_on_id);\n CREATE INDEX IF NOT EXISTS idx_issues_status \n ON issues(status);\n ```\n\n### Medium Impact\n\n3. **Reduce allocations** (167K allocations for GetReadyWork)\n - Profile `scanIssues()` for object pooling opportunities\n - Reuse slice capacity for repeated calls\n\n### Low Impact (Not recommended)\n- Query optimization for CRUD operations (already \u003c3ms)\n- Connection pooling tuning (not showing in profiles)\n\n## Verification\n\nRun benchmarks to validate optimization:\n```bash\nmake bench-quick\ngo tool pprof -http=:8080 internal/storage/sqlite/bench-cpu-*.prof\n```\n\nProfile files automatically generated in `internal/storage/sqlite/`.","status":"closed","issue_type":"bug","created_at":"2025-11-14T09:02:46.507526-08:00","updated_at":"2025-12-17T23:13:40.534258-08:00","closed_at":"2025-12-17T16:21:37.918868-08:00"} +{"id":"bd-6fe4622f","title":"Remove unreachable utility functions","description":"Several small utility functions are unreachable:\n\nFiles to clean:\n1. `internal/storage/sqlite/hash.go` - `computeIssueContentHash` (line 17)\n - Check if entire file can be deleted if only contains this function\n\n2. `internal/config/config.go` - `FileUsed` (line 151)\n - Delete unused config helper\n\n3. `cmd/bd/git_sync_test.go` - `verifyIssueOpen` (line 300)\n - Delete dead test helper\n\n4. `internal/compact/haiku.go` - `HaikuClient.SummarizeTier2` (line 81)\n - Tier 2 summarization not implemented\n - Options: implement feature OR delete method\n\nImpact: Removes 50-100 LOC depending on decisions","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-28T16:20:02.434573-07:00","updated_at":"2025-12-17T22:58:34.563993-08:00","closed_at":"2025-12-17T22:58:34.563993-08:00","close_reason":"Closed"} +{"id":"bd-6gd","title":"Remove legacy MCP Agent Mail integration","description":"## Summary\n\nRemove the legacy MCP Agent Mail system that requires an external HTTP server. Keep the native `bd mail` system which stores messages as git-synced issues.\n\n## Background\n\nTwo mail systems exist in the codebase:\n1. **Legacy Agent Mail** (`bd message`) - External server dependency, complex setup\n2. **Native bd mail** (`bd mail`) - Built-in, git-synced, no dependencies\n\nThe legacy system causes confusion and is no longer needed. Gas Town's Town Mail will use the native `bd mail` system.\n\n## Files to Delete\n\n### CLI Command\n- [ ] `cmd/bd/message.go` - The `bd message` command implementation\n\n### MCP Integration\n- [ ] `integrations/beads-mcp/src/beads_mcp/mail.py` - HTTP wrapper for Agent Mail server\n- [ ] `integrations/beads-mcp/src/beads_mcp/mail_tools.py` - MCP tool definitions\n- [ ] `integrations/beads-mcp/tests/test_mail.py` - Tests for legacy mail\n\n### Documentation\n- [ ] `docs/AGENT_MAIL.md`\n- [ ] `docs/AGENT_MAIL_QUICKSTART.md`\n- [ ] `docs/AGENT_MAIL_DEPLOYMENT.md`\n- [ ] `docs/AGENT_MAIL_MULTI_WORKSPACE_SETUP.md`\n- [ ] `docs/adr/002-agent-mail-integration.md`\n\n## Code to Update\n\n- [ ] Remove `message` command registration from `cmd/bd/main.go`\n- [ ] Remove mail tool imports/registration from MCP server `__init__.py` or `server.py`\n- [ ] Check for any other references to Agent Mail in the codebase\n\n## Verification\n\n- [ ] `bd message` command no longer exists\n- [ ] `bd mail` command still works\n- [ ] MCP server starts without errors\n- [ ] Tests pass\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T23:04:04.099935-08:00","updated_at":"2025-12-17T23:13:24.128752-08:00","closed_at":"2025-12-17T23:13:24.128752-08:00","close_reason":"Removed legacy MCP Agent Mail integration. Kept native bd mail system."} +{"id":"bd-6pc","title":"Implement bd pin/unpin commands","description":"Add 'bd pin \u003cid\u003e' and 'bd unpin \u003cid\u003e' commands to toggle the pinned status of issues. Should support multiple IDs like other bd commands.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:28.292937-08:00","updated_at":"2025-12-19T17:43:35.713398-08:00","closed_at":"2025-12-19T00:35:31.612589-08:00","dependencies":[{"issue_id":"bd-6pc","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.119852-08:00","created_by":"daemon"},{"issue_id":"bd-6pc","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.352848-08:00","created_by":"daemon"}]} +{"id":"bd-6rl","title":"Merge3Way public API does not expose TTL parameter","description":"The public Merge3Way() function in merge.go does not allow callers to configure the tombstone TTL. It hard-codes the default via merge3WayWithTTL(). While merge3WayWithTTL() exists, it is unexported (lowercase). This means the CLI and tests cannot configure TTL at merge time. Use cases: testing with different TTL values, per-repository TTL configuration, debugging with short TTL, supporting --ttl flag in bd merge command (mentioned in design doc bd-zvg). Recommendation: Export Merge3WayWithTTL (rename to uppercase). Files: internal/merge/merge.go:77, 292-298","status":"open","priority":3,"issue_type":"feature","created_at":"2025-12-05T16:36:15.756814-08:00","updated_at":"2025-12-05T16:36:15.756814-08:00"} +{"id":"bd-6s61","title":"Version Bump: {{version}}","description":"Release checklist for version {{version}}. This molecule ensures all release steps are completed properly.","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-19T22:55:42.487701-08:00","updated_at":"2025-12-20T17:59:26.261233-08:00","closed_at":"2025-12-20T01:18:47.905306-08:00","labels":["molecule","template"]} +{"id":"bd-6sm6","title":"Improve test coverage for internal/export (37.1% ā†’ 60%)","description":"The export package has only 37.1% test coverage. Export functionality needs good coverage to ensure data integrity.\n\nCurrent coverage: 37.1%\nTarget coverage: 60%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:06.802277-08:00","updated_at":"2025-12-13T21:01:19.08088-08:00"} +{"id":"bd-746","title":"Fix resolvePartialID stub in workflow.go","description":"The resolvePartialID function at workflow.go:921-925 is a stub that just returns the ID unchanged. Should use utils.ResolvePartialID for proper partial ID resolution in direct mode (non-daemon).","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-17T22:22:57.586917-08:00","updated_at":"2025-12-17T22:34:07.270168-08:00","closed_at":"2025-12-17T22:34:07.270168-08:00"} +{"id":"bd-74w1","title":"Consolidate duplicate path-finding utilities (findJSONLPath, findBeadsDir, findGitRoot)","description":"Code health review found these functions defined in multiple places:\n\n- findJSONLPath() in autoflush.go:45-73 and doctor/fix/migrate.go\n- findBeadsDir() in autoimport.go:197-239 (with git worktree handling)\n- findGitRoot() in autoimport.go:242-269 (Windows path conversion)\n\nThe beads package has public FindBeadsDir() and FindJSONLPath() APIs that should be used consistently.\n\nImpact: Bug fixes need to be applied in multiple places. Git worktree handling may not be replicated everywhere.\n\nFix: Consolidate all implementations to use the beads package APIs. Remove duplicates.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-16T18:17:16.694293-08:00","updated_at":"2025-12-16T18:17:16.694293-08:00","dependencies":[{"issue_id":"bd-74w1","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.526122-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-77gm","title":"Import reports misleading '0 created, 0 updated' when actually importing all issues","description":"When running 'bd import' on a fresh database (no existing issues), the command reports 'Import complete: 0 created, 0 updated' even though it successfully imported all issues from the JSONL file.\n\n**Steps to reproduce:**\n1. Delete .beads/beads.db\n2. Run: bd import .beads/issues.jsonl\n3. Observe output: 'Import complete: 0 created, 0 updated'\n4. Run: bd list\n5. Confirm: All issues are actually present in the database\n\n**Expected behavior:**\nReport the actual number of issues imported, e.g., 'Import complete: 523 created, 0 updated'\n\n**Actual behavior:**\n'Import complete: 0 created, 0 updated' (misleading - makes user think import failed)\n\n**Impact:**\n- Users think import failed when it succeeded\n- Confusing during database sync operations (e.g., after git pull)\n- Makes debugging harder (can't tell if import actually worked)\n\n**Context:**\nDiscovered during VC session when syncing database after git pull. The misleading message caused confusion about whether the database was properly synced with the canonical JSONL file.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-11-09T16:20:13.191156-08:00","updated_at":"2025-11-09T16:20:13.191156-08:00"} +{"id":"bd-7b7h","title":"bd sync --merge fails due to chicken-and-egg: .beads/ always dirty","description":"## Problem\n\nWhen sync.branch is configured (e.g., beads-sync), the bd sync workflow creates a chicken-and-egg problem:\n\n1. `bd sync` commits changes to beads-sync via worktree\n2. `bd sync` copies JSONL to main working dir via `copyJSONLToMainRepo()` (sync.go line 364, worktree.go line 678-685)\n3. The copy is NOT committed to main - it just updates the working tree\n4. `bd sync --merge` checks for clean working dir (sync.go line 1547-1548)\n5. `bd sync --merge` FAILS because .beads/issues.jsonl is uncommitted!\n\n## Impact\n\n- sync.branch workflow is fundamentally broken\n- Users cannot periodically merge beads-sync ā†’ main\n- Main branch always shows as dirty\n- Creates confusion about git state\n\n## Root Cause\n\nsync.go:1547-1548:\n```go\nif len(strings.TrimSpace(string(statusOutput))) \u003e 0 {\n return fmt.Errorf(\"main branch has uncommitted changes, please commit or stash them first\")\n}\n```\n\nThis check blocks merge when ANY uncommitted changes exist, including the .beads/ changes that `bd sync` itself created.\n\n## Proposed Fix\n\nOption A: Exclude .beads/ from the clean check in `mergeSyncBranch`:\n```go\n// Check if there are non-beads uncommitted changes\nstatusCmd := exec.CommandContext(ctx, \"git\", \"status\", \"--porcelain\", \"--\", \":!.beads/\")\n```\n\nOption B: Auto-stash .beads/ changes before merge, restore after\n\nOption C: Change the workflow - do not copy JSONL to main working dir, instead always read from worktree\n\n## Files to Modify\n\n- cmd/bd/sync.go:1540-1549 (mergeSyncBranch function)\n- Possibly internal/syncbranch/worktree.go (copyJSONLToMainRepo)","notes":"## Fix Implemented\n\nModified cmd/bd/sync.go mergeSyncBranch function:\n\n1. **Exclude .beads/ from dirty check** (line 1543):\n Changed `git status --porcelain` to `git status --porcelain -- :!.beads/`\n This allows merge to proceed when only .beads/ has uncommitted changes.\n\n2. **Restore .beads/ to HEAD before merge** (lines 1553-1561):\n Added `git checkout HEAD -- .beads/` before merge to prevent\n \"Your local changes would be overwritten by merge\" errors.\n The .beads/ changes are redundant since they came FROM beads-sync.\n\n## Testing\n\n- All cmd/bd sync/merge tests pass\n- All internal/syncbranch tests pass\n- Manual verification needed for full workflow","status":"tombstone","issue_type":"bug","created_at":"2025-12-16T23:06:06.97703-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-7bbc4e6a","title":"Add MCP server functions for repair commands","description":"**Summary:** Added MCP server repair functions for agent dependency management, system validation, and pollution detection. Implemented across BdClientBase, BdCliClient, and daemon clients to enhance system diagnostics and self-healing capabilities.\n\n**Key Decisions:** \n- Expose repair_deps(), detect_pollution(), validate() via MCP server\n- Create abstract method stubs with fallback to CLI execution\n- Use @mcp.tool decorators for function registration\n\n**Resolution:** Successfully implemented comprehensive repair command infrastructure, enabling more robust system health monitoring and automated remediation with full CLI and daemon support.","notes":"Implemented all three MCP server functions:\n\n1. **repair_deps(fix=False)** - Find/fix orphaned dependencies\n2. **detect_pollution(clean=False)** - Detect/clean test issues \n3. **validate(checks=None, fix_all=False)** - Run comprehensive health checks\n\nChanges:\n- Added abstract methods to BdClientBase\n- Implemented in BdCliClient (CLI execution)\n- Added NotImplementedError stubs in BdDaemonClient (falls back to CLI)\n- Created wrapper functions in tools.py\n- Registered @mcp.tool decorators in server.py\n\nAll commands tested and working with --no-daemon flag.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-28T19:37:55.72639-07:00","updated_at":"2025-12-16T01:08:11.983953-08:00","closed_at":"2025-11-07T19:38:12.152437-08:00"} +{"id":"bd-7di","title":"worktree: any bd command is slow","description":"in a git worktree any bd command is slow, with a 2-3s pause before any results are shown. The identical command with `--no-daemon` is near instant.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-05T15:33:42.924618693-07:00","updated_at":"2025-12-05T15:33:42.924618693-07:00"} +{"id":"bd-7h5","title":"Add pinned field to issue schema","description":"Add boolean 'pinned' field to the issue schema. When true, the issue is marked as a persistent context marker that should not be treated as a work item.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:26.767247-08:00","updated_at":"2025-12-19T00:08:59.854605-08:00","closed_at":"2025-12-19T00:08:59.854605-08:00","close_reason":"Implemented by polecat Slit - pushed to main","dependencies":[{"issue_id":"bd-7h5","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:55.98635-08:00","created_by":"daemon"}]} +{"id":"bd-7h7","title":"bd init should stop running daemon to avoid stale cache","description":"When running bd init, any running daemon continues with stale cached data, causing bd stats and other commands to show old counts.\n\nRepro:\n1. Have daemon running with 788 issues cached\n2. Clean JSONL to 128 issues, delete db, run bd init\n3. bd stats still shows 788 (daemon cache)\n4. Must manually run bd daemon --stop\n\nFix: bd init should automatically stop any running daemon before reinitializing.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T13:26:47.117226-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-7m16","title":"GH#519: bd sync fails when sync.branch is currently checked-out branch","description":"bd sync tries to create worktree for sync.branch even when already on that branch. Should commit directly instead. See GitHub issue #519.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:36.613211-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-7tuu","title":"Commit and push release","description":"git add -A \u0026\u0026 git commit \u0026\u0026 git push to trigger CI","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:02.053382-08:00","updated_at":"2025-12-20T01:23:52.484043-08:00","closed_at":"2025-12-20T01:23:52.484043-08:00","close_reason":"Superseded by 0.30.7 release - already committed and pushed","dependencies":[{"issue_id":"bd-7tuu","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.021087-08:00","created_by":"daemon"},{"issue_id":"bd-7tuu","depends_on_id":"bd-hw3w","type":"blocks","created_at":"2025-12-19T22:56:23.291591-08:00","created_by":"daemon"}]} +{"id":"bd-7yg","title":"Git merge driver uses invalid placeholders (%L, %R instead of %A, %B)","description":"## Problem\n\nThe beads git merge driver is configured with invalid Git placeholders:\n\n```\ngit config merge.beads.driver \"bd merge %A %O %L %R\"\n```\n\nGit doesn't recognize `%L` or `%R` as valid merge driver placeholders. The valid placeholders are:\n- `%O` = base (common ancestor)\n- `%A` = current version (ours)\n- `%B` = other version (theirs)\n\n## Impact\n\n- Affects ALL users when they have `.beads/beads.jsonl` merge conflicts\n- Automatic JSONL merge fails with error: \"error reading left file: failed to open file: open 7: no such file or directory\"\n- Users must manually resolve conflicts instead of getting automatic merge\n\n## Root Cause\n\nThe `bd init` command (or wherever the merge driver is configured) is using non-standard placeholders. When Git encounters `%L` and `%R`, it either passes them literally or interprets them incorrectly.\n\n## Fix\n\nUpdate the merge driver configuration to:\n```\ngit config merge.beads.driver \"bd merge %A %O %A %B\"\n```\n\nWhere:\n- 1st `%A` = output file (current file, will be overwritten)\n- `%O` = base (common ancestor)\n- 2nd `%A` = left/current version\n- `%B` = right/other version\n\n## Action Items\n\n1. Fix `bd init` (or equivalent setup command) to use correct placeholders\n2. Add migration/warning for existing users with misconfigured merge driver\n3. Update documentation with correct merge driver setup\n4. Consider adding validation when `bd init` is run","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-21T19:51:55.747608-05:00","updated_at":"2025-12-17T23:13:40.532368-08:00","closed_at":"2025-12-17T17:24:52.678668-08:00"} +{"id":"bd-89f89fc0","title":"Remove unreachable RPC methods","description":"Several RPC server and client methods are unreachable and should be removed:\n\nServer methods (internal/rpc/server.go):\n- `Server.GetLastImportTime` (line 2116)\n- `Server.SetLastImportTime` (line 2123)\n- `Server.findJSONLPath` (line 2255)\n\nClient methods (internal/rpc/client.go):\n- `Client.Import` (line 311) - RPC import not used (daemon uses autoimport)\n\nEvidence:\n```bash\ngo run golang.org/x/tools/cmd/deadcode@latest -test ./...\n```\n\nImpact: Removes ~80 LOC of unused RPC code","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-28T16:20:02.432202-07:00","updated_at":"2025-12-17T22:58:34.564401-08:00","closed_at":"2025-12-17T22:58:34.564401-08:00","close_reason":"Closed"} +{"id":"bd-8e0q","title":"Merge: beads-ocs","description":"branch: polecat/valkyrie\ntarget: main\nsource_issue: beads-ocs\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:24:45.281478-08:00","updated_at":"2025-12-19T23:24:45.281478-08:00"} +{"id":"bd-8fgn","title":"test hash length","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T13:49:32.113843-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-8g8","title":"Fix G304 potential file inclusion in cmd/bd/tips.go:259","description":"Linting issue: G304: Potential file inclusion via variable (gosec) at cmd/bd/tips.go:259:18. Error: if data, err := os.ReadFile(settingsPath); err == nil {","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:34:57.189730843-07:00","updated_at":"2025-12-17T23:13:40.534569-08:00","closed_at":"2025-12-17T16:46:11.029837-08:00"} +{"id":"bd-8hy","title":"Kill running daemons","description":"Stop all bd daemons before release:\n\n```bash\npkill -f 'bd.*daemon' || true\nsleep 1\npgrep -lf 'bd.*daemon' # Should show nothing\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:58.255478-08:00","updated_at":"2025-12-18T22:43:55.394966-08:00","closed_at":"2025-12-18T22:43:55.394966-08:00","dependencies":[{"issue_id":"bd-8hy","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.23168-08:00","created_by":"daemon"}]} +{"id":"bd-8pyn","title":"Version Bump: 0.30.7","description":"Release checklist for version 0.30.7. This molecule ensures all release steps are completed properly.","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-19T22:56:48.648694-08:00","updated_at":"2025-12-20T00:49:51.927518-08:00","closed_at":"2025-12-20T00:25:59.529183-08:00"} +{"id":"bd-8v2","title":"Add {{version}} to versionChanges in info.go","description":"Add new entry at TOP of versionChanges in cmd/bd/info.go with release notes from CHANGELOG.md. Must do before bump-version.sh --commit.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:00.482846-08:00","updated_at":"2025-12-18T22:45:21.465817-08:00","closed_at":"2025-12-18T22:45:21.465817-08:00","dependencies":[{"issue_id":"bd-8v2","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.496649-08:00","created_by":"daemon"},{"issue_id":"bd-8v2","depends_on_id":"bd-kyo","type":"blocks","created_at":"2025-12-18T22:43:20.69619-08:00","created_by":"daemon"}]} +{"id":"bd-90v","title":"bd prime: AI context loading and Claude Code integration","description":"Implement `bd prime` command and Claude Code hooks for context recovery. Hooks work with BOTH MCP server and CLI approaches - they solve the context memory problem (keeping bd workflow fresh after compaction) not the tool access problem (MCP vs CLI).","status":"open","priority":2,"issue_type":"epic","created_at":"2025-11-11T23:31:12.119012-08:00","updated_at":"2025-11-12T00:11:07.743189-08:00"} +{"id":"bd-95k8","title":"Pinned field available in beads v0.37.0","description":"Hey max,\n\nHeads up on your mail overhaul work:\n\n1. **Pinned field is available** - beads v0.37.0 (released by dave earlier) includes the pinned field on issues. You'll want to add this to BeadsMessage in types.go.\n\n2. **Database migration** - Check if existing .beads databases need migration to support the pinned field. Run `bd doctor` to see if it flags anything.\n\n3. **Sorting task** - Once you have the pinned field, gt-ngu1 (pinned beads first in mail inbox) needs implementing. Since messages now come from `bd list --type=message`, you'll need to either:\n - Sort in listBeads() after fetching, or\n - Ensure bd list returns pinned items first (may already do this?)\n\nCheck what version of bd you're building against.\n\n-- Mayor","status":"open","priority":2,"issue_type":"message","assignee":"gastown/crew/max","created_at":"2025-12-20T17:51:57.315956-08:00","updated_at":"2025-12-20T17:51:57.315956-08:00","labels":["from:beads-crew-dave","thread:thread-71ac20c7e432"]} +{"id":"bd-9cdc","title":"Update docs for import bug fix","description":"Update AGENTS.md, README.md, TROUBLESHOOTING.md with import.orphan_handling config documentation. Document resurrection behavior, tombstones, config modes. Add troubleshooting section for import failures with deleted parents.","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-04T12:32:30.770415-08:00","updated_at":"2025-11-04T12:32:30.770415-08:00"} +{"id":"bd-9g1z","title":"Fix or remove TestFindJSONLPathDefault (issue #356)","description":"Code health review found .test-skip permanently skips TestFindJSONLPathDefault.\n\nThe test references issue #356 about wrong JSONL filename expectations (issues.jsonl vs beads.jsonl).\n\nTest file: internal/beads/beads_test.go\n\nThe underlying migration from beads.jsonl to issues.jsonl may be complete, so either:\n1. Fix the test expectations\n2. Remove the test if no longer needed\n3. Document why it remains skipped","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-16T18:17:31.33975-08:00","updated_at":"2025-12-16T18:17:31.33975-08:00","dependencies":[{"issue_id":"bd-9g1z","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.169617-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-9l0h","title":"Run tests and linting","description":"go test -short ./... \u0026\u0026 golangci-lint run ./...","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:19.527602-08:00","updated_at":"2025-12-20T21:55:29.660914-08:00","closed_at":"2025-12-20T21:55:29.660914-08:00","close_reason":"Tests passed, go vet clean","dependencies":[{"issue_id":"bd-9l0h","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:19.529203-08:00","created_by":"daemon"},{"issue_id":"bd-9l0h","depends_on_id":"bd-gocx","type":"blocks","created_at":"2025-12-20T21:53:29.753682-08:00","created_by":"daemon"}]} +{"id":"bd-9usz","title":"Test suite hangs/never finishes","description":"Running 'go test ./... -count=1' hangs indefinitely. The full test suite never completes, making it difficult to verify changes. Need to investigate which tests are hanging and fix or add timeouts.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-16T21:56:27.80191-08:00","updated_at":"2025-12-16T21:56:27.80191-08:00"} +{"id":"bd-a0cp","title":"Consider using types.Status in merge package for type safety","description":"The merge package uses string for status comparison (e.g., result.Status == closed, issue.Status == StatusTombstone). The types package defines Status as a type alias with validation. While the merge package needs its own Issue struct for JSONL flexibility, it could import and use types.Status for constants to get compile-time type checking. Current code: if left == closed || right == closed. Could be: if left == string(types.StatusClosed). This is low priority since string comparison works correctly. Files: internal/merge/merge.go:44, 488, 501-521","status":"open","priority":4,"issue_type":"task","created_at":"2025-12-05T16:37:10.690424-08:00","updated_at":"2025-12-05T16:37:10.690424-08:00"} +{"id":"bd-a15d","title":"Add test files for internal/storage","description":"The internal/storage package has no test files at all. This package provides the storage interface abstraction.\n\nCurrent coverage: N/A (no test files)\nTarget: Add basic interface tests","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:11.363017-08:00","updated_at":"2025-12-13T21:01:20.925779-08:00"} +{"id":"bd-aay","title":"Warn on invalid depends_on references in workflow templates","description":"workflow.go:780-781 silently skips invalid dependency names. Should log a warning when a depends_on reference doesn't match any task ID in the template.","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T22:23:04.325253-08:00","updated_at":"2025-12-17T22:34:07.309495-08:00","closed_at":"2025-12-17T22:34:07.309495-08:00"} +{"id":"bd-abjw","title":"Consider consolidating config.yaml parsing into shared utility","description":"Multiple places parse config.yaml with custom structs:\n\n1. **autoimport.go:148** - `localConfig{SyncBranch}`\n2. **main.go:310** - strings.Contains for no-db (fragile, see bd-r6k2)\n3. **doctor.go:863** - strings.Contains for no-db (fragile, see bd-r6k2)\n4. **internal/config/config.go** - Uses viper (but caches at startup, problematic for tests)\n\nConsider creating a shared utility in `internal/configfile/` or extending the viper config:\n\n```go\n// internal/configfile/yaml.go\ntype YAMLConfig struct {\n SyncBranch string `yaml:\"sync-branch\"`\n NoDb bool `yaml:\"no-db\"`\n IssuePrefix string `yaml:\"issue-prefix\"`\n Author string `yaml:\"author\"`\n}\n\nfunc LoadYAML(beadsDir string) (*YAMLConfig, error) {\n // Parse config.yaml with proper YAML library\n}\n```\n\nBenefits:\n- Single source of truth for config.yaml structure\n- Proper YAML parsing everywhere\n- Easier to add new config fields\n\nTrade-off: May add complexity for simple one-off reads.","status":"open","priority":4,"issue_type":"task","created_at":"2025-12-07T02:03:26.067311-08:00","updated_at":"2025-12-07T02:03:26.067311-08:00"} +{"id":"bd-adoe","title":"Add --hard flag to bd cleanup to permanently cull tombstones before cutoff date","description":"Currently tombstones persist for 30 days before cleanup prunes them. Need an official way to force-cull tombstones earlier than the default TTL, for scenarios like cleaning house after extended absence where resurrection from old clones is not a concern. Proposed: bd cleanup --hard --older-than N to bypass the 30-day tombstone TTL.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:17:31.064914-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} +{"id":"bd-aec5439f","title":"Update LINTING.md with current baseline","description":"After cleanup, document the remaining acceptable baseline in LINTING.md so we can track regression.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-27T18:53:10.38679-07:00","updated_at":"2025-12-17T22:58:34.564854-08:00","closed_at":"2025-12-17T22:58:34.564854-08:00","close_reason":"Closed"} +{"id":"bd-an4s","title":"Version Bump: 0.32.1","description":"Release checklist for version 0.32.1. Patch release with MCP output control params and pin field fix.","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-20T21:53:01.315592-08:00","updated_at":"2025-12-20T21:57:13.909864-08:00","closed_at":"2025-12-20T21:57:13.909864-08:00","close_reason":"Version 0.32.1 released"} +{"id":"bd-ao0s","title":"bd graph crashes with --no-daemon on closed issues","description":"The `bd graph` command panics with nil pointer dereference when using `--no-daemon` flag on an issue with closed children.\n\n**Reproduction:**\n```bash\nbd graph bd-qqc --no-daemon\n# panic: runtime error: invalid memory address or nil pointer dereference\n# in main.computeDependencyCounts\n```\n\n**Stack trace:**\n```\npanic: runtime error: invalid memory address or nil pointer dereference\n[signal SIGSEGV: segmentation violation code=0x2 addr=0x20 pc=0x1010bdfb0]\n\ngoroutine 1 [running]:\nmain.computeDependencyCounts(...)\n /Users/stevey/gt/beads/crew/emma/cmd/bd/graph.go:428\nmain.renderGraph(0x1400033bb80, 0x0)\n /Users/stevey/gt/beads/crew/emma/cmd/bd/graph.go:307 +0x300\n```\n\n**Location:** cmd/bd/graph.go:428 - computeDependencyCounts() not handling nil case","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-18T22:57:36.972585-08:00","updated_at":"2025-12-20T01:13:29.206821-08:00","closed_at":"2025-12-20T01:13:29.206821-08:00","close_reason":"Fixed: pass subgraph instead of nil to renderGraph"} {"id":"bd-au0","title":"Command Set Standardization \u0026 Flag Consistency","description":"Comprehensive improvements to bd command set based on 2025 audit findings.\n\n## Background\nSee docs/command-audit-2025.md for detailed analysis.\n\n## Goals\n1. Standardize flag naming and behavior across all commands\n2. Add missing flags for feature parity\n3. Fix naming confusion\n4. Improve consistency in JSON output\n\n## Success Criteria\n- All mutating commands support --dry-run (no --preview variants)\n- bd update supports label operations\n- bd search has filter parity with bd list\n- Priority flags accept both int and P0-P4 format everywhere\n- JSON output is consistent across all commands","status":"open","priority":2,"issue_type":"epic","created_at":"2025-11-21T21:05:55.672749-05:00","updated_at":"2025-11-21T21:05:55.672749-05:00"} -{"id":"bd-ork0","title":"Add comments to 30+ silently ignored errors or fix them","description":"Code health review found 30+ instances of error suppression using blank identifier without explanation:\n\nGood examples (with comments):\n- merge.go: _ = gitRmCmd.Run() // Ignore errors\n- daemon_watcher.go: _ = watcher.Add(...) // Ignore error\n\nBad examples (no context):\n- create.go:213: dbPrefix, _ = store.GetConfig(ctx, \"issue_prefix\")\n- daemon_sync_branch.go: _ = daemonClient.Close()\n- migrate_hash_ids.go, version_tracking.go: _ = store.Close()\n\nFix: Add comments explaining WHY errors are ignored, or handle them properly.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:25.899372-08:00","updated_at":"2025-12-16T18:17:25.899372-08:00","dependencies":[{"issue_id":"bd-ork0","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.275843-08:00","created_by":"daemon"}]} +{"id":"bd-au0.10","title":"Add global verbosity flags (--verbose, --quiet)","description":"Add consistent verbosity controls across all commands.\n\n**Current state:**\n- bd init has --quiet flag\n- No other commands have verbosity controls\n- Debug output controlled by BD_VERBOSE env var\n\n**Proposal:**\nAdd persistent flags:\n- --verbose / -v: Enable debug output\n- --quiet / -q: Suppress non-essential output\n\n**Implementation:**\n- Add to rootCmd.PersistentFlags()\n- Replace BD_VERBOSE checks with flag checks\n- Standardize output levels:\n * Quiet: Errors only\n * Normal: Errors + success messages\n * Verbose: Errors + success + debug info\n\n**Files to modify:**\n- cmd/bd/main.go (add flags)\n- internal/debug/debug.go (respect flags)\n- Update all commands to respect quiet mode\n\n**Testing:**\n- Verify --verbose shows debug output\n- Verify --quiet suppresses normal output\n- Ensure errors always show regardless of mode","status":"open","priority":3,"issue_type":"task","created_at":"2025-11-21T21:08:21.600209-05:00","updated_at":"2025-11-21T21:08:21.600209-05:00","dependencies":[{"issue_id":"bd-au0.10","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:08:21.602557-05:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-au0.5","title":"Add date and priority filters to bd search","description":"Add filter parity with bd list for consistent querying.\n\n**Missing filters to add:**\n- --priority, --priority-min, --priority-max\n- --created-after, --created-before\n- --updated-after, --updated-before\n- --closed-after, --closed-before\n- --empty-description, --no-assignee, --no-labels\n- --desc-contains, --notes-contains\n\n**Files to modify:**\n- cmd/bd/search.go\n- internal/rpc/protocol.go (SearchArgs)\n- internal/storage/storage.go (Search method)\n\n**Testing:**\n- All filter combinations\n- Date format parsing\n- Daemon and direct mode","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-21T21:07:05.496726-05:00","updated_at":"2025-11-21T21:07:05.496726-05:00","dependencies":[{"issue_id":"bd-au0.5","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:05.497762-05:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-au0.6","title":"Add comprehensive filters to bd export","description":"Enhance bd export with filtering options for selective exports.\n\n**Currently only has:**\n- --status\n\n**Add filters:**\n- --label, --label-any\n- --assignee\n- --type\n- --priority, --priority-min, --priority-max\n- --created-after, --created-before\n- --updated-after, --updated-before\n\n**Use case:**\n- Export only open issues: bd export --status open\n- Export high-priority bugs: bd export --type bug --priority-max 1\n- Export recent issues: bd export --created-after 2025-01-01\n\n**Files to modify:**\n- cmd/bd/export.go\n- Reuse filter logic from list.go","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-21T21:07:19.431307-05:00","updated_at":"2025-11-21T21:07:19.431307-05:00","dependencies":[{"issue_id":"bd-au0.6","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:19.432983-05:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-au0.7","title":"Audit and standardize JSON output across all commands","description":"Ensure consistent JSON format and error handling when --json flag is used.\n\n**Scope:**\n1. Verify all commands respect --json flag\n2. Standardize success response format\n3. Standardize error response format\n4. Document JSON schemas\n\n**Commands to audit:**\n- Core CRUD: create, update, delete, show, list, search āœ“\n- Queries: ready, blocked, stale, count, stats, status\n- Deps: dep add/remove/tree/cycles\n- Labels: label commands\n- Comments: comments add/list/delete\n- Epics: epic status/close-eligible\n- Export/import: already support --json āœ“\n\n**Testing:**\n- Success cases return valid JSON\n- Error cases return valid JSON (not plain text)\n- Consistent field naming (snake_case vs camelCase)\n- Array vs object wrapping consistency","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-21T21:07:35.304424-05:00","updated_at":"2025-11-21T21:07:35.304424-05:00","dependencies":[{"issue_id":"bd-au0.7","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:35.305663-05:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-au0.8","title":"Improve clean vs cleanup command naming/documentation","description":"Clarify the difference between bd clean and bd cleanup to reduce user confusion.\n\n**Current state:**\n- bd clean: Remove temporary artifacts (.beads/bd.sock, logs, etc.)\n- bd cleanup: Delete old closed issues from database\n\n**Options:**\n1. Rename for clarity:\n - bd clean ā†’ bd clean-temp\n - bd cleanup ā†’ bd cleanup-issues\n \n2. Keep names but improve help text and documentation\n\n3. Add prominent warnings in help output\n\n**Preferred approach:** Option 2 (improve documentation)\n- Update short/long descriptions in commands\n- Add examples to help text\n- Update README.md\n- Add cross-references in help output\n\n**Files to modify:**\n- cmd/bd/clean.go\n- cmd/bd/cleanup.go\n- README.md or ADVANCED.md","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-21T21:07:49.960534-05:00","updated_at":"2025-11-21T21:07:49.960534-05:00","dependencies":[{"issue_id":"bd-au0.8","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:49.962743-05:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-au0.9","title":"Review and document rarely-used commands","description":"Document use cases or consider deprecation for infrequently-used commands.\n\n**Commands to review:**\n1. bd rename-prefix - How often is this used? Document use cases\n2. bd detect-pollution - Consider integrating into bd validate\n3. bd migrate-hash-ids - One-time migration, keep but document as legacy\n\n**For each command:**\n- Document typical use cases\n- Add examples to help text\n- Consider if it should be a subcommand instead\n- Add deprecation warning if appropriate\n\n**Not changing:**\n- duplicates āœ“ (useful for data quality)\n- repair-deps āœ“ (useful for fixing broken refs)\n- restore āœ“ (critical for compacted issues)\n- compact āœ“ (performance feature)\n\n**Deliverable:**\n- Updated help text\n- Documentation in ADVANCED.md\n- Deprecation plan if needed","status":"open","priority":3,"issue_type":"task","created_at":"2025-11-21T21:08:05.588275-05:00","updated_at":"2025-11-21T21:08:05.588275-05:00","dependencies":[{"issue_id":"bd-au0.9","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:08:05.59003-05:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-aydr","title":"Add bd reset command for clean slate restart","description":"Implement a `bd reset` command to reset beads to a clean starting state.\n\n## Context\nGitHub issue #479 - users sometimes get beads into an invalid state after updates, and there's no clean way to start fresh. The git backup/restore mechanism that protects against accidental deletion also makes it hard to intentionally reset.\n\n## Design\n\n### Command Interface\n```\nbd reset [--hard] [--force] [--backup] [--dry-run] [--no-init]\n```\n\n| Flag | Effect |\n|------|--------|\n| `--hard` | Also remove from git index and commit |\n| `--force` | Skip confirmation prompt |\n| `--backup` | Create `.beads-backup-{timestamp}/` first |\n| `--dry-run` | Preview what would happen |\n| `--no-init` | Don't re-initialize after clearing |\n\n### Reset Levels\n1. **Soft Reset (default)** - Kill daemons, clear .beads/, re-init. Git history unchanged.\n2. **Hard Reset (`--hard`)** - Also git rm and commit the removal, then commit fresh state.\n\n### Implementation Flow\n1. Validate .beads/ exists\n2. If not --force: show impact summary, prompt confirmation\n3. If --backup: copy .beads/ to .beads-backup-{timestamp}/\n4. Kill daemons\n5. If --hard: git rm + commit\n6. rm -rf .beads/*\n7. If not --no-init: bd init (and git add+commit if --hard)\n8. Print summary\n\n### Safety Mechanisms\n- Confirmation prompt (skip with --force)\n- Impact summary (issue/tombstone counts)\n- Backup option\n- Dry-run preview\n- Git dirty check warning\n\n### Code Structure\n- `cmd/bd/reset.go` - CLI command\n- `internal/reset/` - Core logic package","status":"closed","priority":2,"issue_type":"epic","created_at":"2025-12-13T08:44:01.38379+11:00","updated_at":"2025-12-13T06:24:29.561294-08:00","closed_at":"2025-12-13T10:18:19.965287+11:00"} +{"id":"bd-aydr.1","title":"Implement core reset package (internal/reset)","description":"Create the core reset logic in internal/reset/ package.\n\n## Responsibilities\n- ResetOptions struct with all flag options\n- CountImpact() - count issues/tombstones that will be deleted\n- ValidateState() - check .beads/ exists, check git dirty state\n- ExecuteReset() - main reset logic (without CLI concerns)\n- Integrate with daemon killall\n\n## Interface Design\n```go\ntype ResetOptions struct {\n Hard bool // Include git operations (git rm, commit)\n Backup bool // Create backup before reset\n DryRun bool // Preview only, don't execute\n SkipInit bool // Don't re-initialize after reset\n}\n\ntype ResetResult struct {\n IssuesDeleted int\n TombstonesDeleted int\n BackupPath string // if backup was created\n DaemonsKilled int\n}\n\ntype ImpactSummary struct {\n IssueCount int\n OpenCount int\n ClosedCount int\n TombstoneCount int\n HasUncommitted bool // git dirty state\n}\n\nfunc Reset(opts ResetOptions) (*ResetResult, error)\nfunc CountImpact() (*ImpactSummary, error)\nfunc ValidateState() error\n```\n\n## IMPORTANT: CLI vs Core Separation\n- `Force` (skip confirmation) is NOT in ResetOptions - that's a CLI concern\n- Core always executes when called; CLI decides whether to prompt first\n- Keep CLI-agnostic: no prompts, no colored output, no user interaction\n- Return errors for CLI to handle with user-friendly messages\n- Unit testable in isolation\n\n## Dependencies\n- Uses daemon.KillAllDaemons() from internal/daemon/\n- Calls bd init logic after reset (unless SkipInit)","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:50.145364+11:00","updated_at":"2025-12-13T10:13:32.610253+11:00","closed_at":"2025-12-13T09:20:06.184893+11:00","dependencies":[{"issue_id":"bd-aydr.1","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:50.145775+11:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-aydr.2","title":"Implement backup functionality for reset","description":"Add backup capability that can be used by reset command.\n\n## Functionality\n- Copy .beads/ to .beads-backup-{timestamp}/\n- Timestamp format: YYYYMMDD-HHMMSS\n- Preserve file permissions\n- Return backup path for user feedback\n\n## Location\n`internal/reset/backup.go` - keep with reset package for now (YAGNI)\n\n## Interface\n```go\nfunc CreateBackup(beadsDir string) (backupPath string, err error)\n```\n\n## Notes\n- Simple recursive file copy, no compression needed\n- Error if backup dir already exists (unlikely with timestamp)\n- Backup directories SHOULD be gitignored\n- Add `.beads-backup-*/` pattern to .beads/.gitignore template in doctor package\n- Consider: ListBackups() for future `bd backup list` command (not for this PR)","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:51.306103+11:00","updated_at":"2025-12-13T10:13:32.610819+11:00","closed_at":"2025-12-13T09:20:20.590488+11:00","dependencies":[{"issue_id":"bd-aydr.2","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:51.306474+11:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-aydr.3","title":"Add git operations for --hard reset","description":"Implement git integration for hard reset mode.\n\n## Operations Needed\n1. `git rm -rf .beads/*.jsonl` - remove data files from index\n2. `git commit -m 'beads: reset to clean state'` - commit removal\n3. After re-init: `git add .beads/` and commit fresh state\n\n## Edge Cases to Handle\n- Uncommitted changes in .beads/ - warn or error\n- Detached HEAD state - warn, maybe block\n- Git not initialized - skip git ops, warn\n- Git operations fail mid-way - clear error messaging\n\n## Interface\n```go\ntype GitState struct {\n IsRepo bool\n IsDirty bool // uncommitted changes in .beads/\n IsDetached bool // detached HEAD\n Branch string // current branch name\n}\n\nfunc CheckGitState(beadsDir string) (*GitState, error)\nfunc GitRemoveBeads(beadsDir string) error\nfunc GitCommitReset(message string) error\nfunc GitAddAndCommit(beadsDir, message string) error\n```\n\n## Location\n`internal/reset/git.go` - keep with reset package for now\n\nNote: Codebase has no central git package. internal/compact/git.go is compact-specific.\nFuture refactoring could extract shared git utilities, but YAGNI for now.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:52.798312+11:00","updated_at":"2025-12-13T10:13:32.611131+11:00","closed_at":"2025-12-13T09:17:40.785927+11:00","dependencies":[{"issue_id":"bd-aydr.3","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:52.798715+11:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-aydr.4","title":"Implement CLI command (cmd/bd/reset.go)","description":"Wire up the reset command with Cobra CLI.\n\n## Responsibilities\n- Define command and all flags\n- User confirmation prompt (unless --force)\n- Display impact summary before confirmation\n- Colored output and progress indicators\n- Call core reset package\n- Handle errors with user-friendly messages\n- Register command with rootCmd in init()\n\n## Flags\n```go\n--hard bool \"Also remove from git and commit\"\n--force bool \"Skip confirmation prompt\"\n--backup bool \"Create backup before reset\"\n--dry-run bool \"Preview what would happen\"\n--skip-init bool \"Do not re-initialize after reset\"\n--verbose bool \"Show detailed progress output\"\n```\n\n## Output Format\n```\nāš ļø This will reset beads to a clean state.\n\nWill be deleted:\n ā€¢ 47 issues (23 open, 24 closed)\n ā€¢ 12 tombstones\n\nContinue? [y/N] y\n\nā†’ Stopping daemons... āœ“\nā†’ Removing .beads/... āœ“\nā†’ Initializing fresh... āœ“\n\nāœ“ Reset complete. Run 'bd onboard' to set up hooks.\n```\n\n## Implementation Notes\n- Confirmation logic lives HERE, not in core package\n- Use color package (github.com/fatih/color) for output\n- Follow patterns from other commands (init.go, doctor.go)\n- Add to rootCmd in init() function\n\n## File Location\n`cmd/bd/reset.go`","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:54.318854+11:00","updated_at":"2025-12-13T10:13:32.611434+11:00","closed_at":"2025-12-13T09:59:41.72638+11:00","dependencies":[{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:54.319237+11:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr.1","type":"blocks","created_at":"2025-12-13T08:45:09.762138+11:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr.2","type":"blocks","created_at":"2025-12-13T08:45:09.817854+11:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-aydr.4","depends_on_id":"bd-aydr.3","type":"blocks","created_at":"2025-12-13T08:45:09.883658+11:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-aydr.5","title":"Enhance bd doctor to suggest reset for broken states","description":"Update bd doctor to detect severely broken states and suggest reset.\n\n## Detection Criteria\nSuggest reset when:\n- Multiple unfixable errors detected\n- Corrupted JSONL that can't be repaired\n- Schema version mismatch that can't be migrated\n- Daemon state inconsistent and unkillable\n\n## Implementation\nAdd to doctor's check/fix flow:\n```go\nif unfixableErrors \u003e threshold {\n suggest('State may be too broken to fix. Consider: bd reset')\n}\n```\n\n## Output Example\n```\nāœ— Found 5 unfixable errors\n \n Your beads state may be too corrupted to repair.\n Consider running 'bd reset' to start fresh.\n (Use 'bd reset --backup' to save current state first)\n```\n\n## Notes\n- Don't auto-run reset, just suggest\n- This is lower priority, can be done in parallel with main work","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-13T08:44:55.591986+11:00","updated_at":"2025-12-13T06:24:29.561624-08:00","closed_at":"2025-12-13T10:17:23.4522+11:00","dependencies":[{"issue_id":"bd-aydr.5","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:55.59239+11:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-aydr.6","title":"Add unit tests for reset package","description":"Comprehensive unit tests for internal/reset package.\n\n## Test Cases\n\n### ValidateState tests\n- .beads/ exists ā†’ success\n- .beads/ missing ā†’ appropriate error\n- git dirty state detection\n\n### CountImpact tests \n- Empty .beads/ ā†’ zero counts\n- With issues ā†’ correct count (open vs closed)\n- With tombstones ā†’ correct count\n- Returns HasUncommitted correctly\n\n### Backup tests\n- Creates backup with correct timestamp format\n- Preserves all files and permissions\n- Returns correct path\n- Handles missing .beads/ gracefully\n- Errors on pre-existing backup dir\n\n### Git operation tests\n- CheckGitState detects dirty, detached, not-a-repo\n- GitRemoveBeads removes correct files\n- GitCommitReset creates commit with message\n- Operations skip gracefully when not in git repo\n\n### Reset tests (with mocks/temp dirs)\n- Soft reset removes files, calls init\n- Hard reset includes git operations\n- Dry run doesn't modify anything\n- SkipInit flag prevents re-initialization\n- Daemon killall is called\n- Backup is created when requested\n\n## Approach\n- Can start with interface definitions (TDD style)\n- Use testify for assertions\n- Create temp directories for isolation\n- Mock git operations where needed\n- Test completion depends on implementation tasks\n\n## File Location\n`internal/reset/reset_test.go`\n`internal/reset/backup_test.go`\n`internal/reset/git_test.go`","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:57.01739+11:00","updated_at":"2025-12-13T10:13:32.611698+11:00","closed_at":"2025-12-13T09:59:20.820314+11:00","dependencies":[{"issue_id":"bd-aydr.6","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:57.017813+11:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-aydr.7","title":"Add integration tests for bd reset command","description":"End-to-end integration tests for the reset command.\n\n## Test Scenarios\n\n### Basic reset\n1. Init beads, create some issues\n2. Run bd reset --force\n3. Verify .beads/ is fresh, issues gone\n\n### Hard reset\n1. Init beads, create issues, commit\n2. Run bd reset --hard --force \n3. Verify git history has reset commits\n\n### Backup functionality\n1. Init beads, create issues\n2. Run bd reset --backup --force\n3. Verify backup exists with correct contents\n4. Verify main .beads/ is reset\n\n### Dry run\n1. Init beads, create issues\n2. Run bd reset --dry-run\n3. Verify nothing changed\n\n### Confirmation prompt\n1. Init beads\n2. Run bd reset (no --force)\n3. Verify prompts for confirmation\n4. Test both y and n responses\n\n## Location\ntests/integration/reset_test.go or similar","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:44:58.479282+11:00","updated_at":"2025-12-13T06:24:29.561908-08:00","closed_at":"2025-12-13T10:15:59.221637+11:00","dependencies":[{"issue_id":"bd-aydr.7","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:44:58.479686+11:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-aydr.7","depends_on_id":"bd-aydr.4","type":"blocks","created_at":"2025-12-13T08:45:11.15972+11:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-aydr.8","title":"Respond to GitHub issue #479 with solution","description":"Once bd reset is implemented and released, respond to GitHub issue #479.\n\n## Response should include\n- Announce the new bd reset command\n- Show basic usage examples\n- Link to any documentation\n- Thank the user for the feedback\n\n## Example response\n```\nThanks for raising this! We've added a `bd reset` command to handle this case.\n\nUsage:\n- `bd reset` - Reset to clean state (prompts for confirmation)\n- `bd reset --backup` - Create backup first\n- `bd reset --hard` - Also clean up git history\n\nThis is available in version X.Y.Z.\n```\n\n## Notes\n- Wait until feature is merged and released\n- Consider if issue should be closed or left for user confirmation","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-13T08:45:00.112351+11:00","updated_at":"2025-12-13T06:24:29.562177-08:00","closed_at":"2025-12-13T10:18:06.646796+11:00","dependencies":[{"issue_id":"bd-aydr.8","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:45:00.112732+11:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-aydr.8","depends_on_id":"bd-aydr.7","type":"blocks","created_at":"2025-12-13T08:45:12.640243+11:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-aydr.9","title":"Add .beads-backup-* pattern to gitignore template","description":"Update the gitignore template in doctor package to include backup directories.\n\n## Change\nAdd `.beads-backup-*/` to the GitignoreTemplate in `cmd/bd/doctor/gitignore.go`\n\n## Why\nBackup directories created by `bd reset --backup` should not be committed to git.\nThey are local-only recovery tools.\n\n## File\n`cmd/bd/doctor/gitignore.go` - look for GitignoreTemplate constant","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-13T08:49:42.453483+11:00","updated_at":"2025-12-13T09:16:44.201889+11:00","closed_at":"2025-12-13T09:16:44.201889+11:00","dependencies":[{"issue_id":"bd-aydr.9","depends_on_id":"bd-aydr","type":"parent-child","created_at":"2025-12-13T08:49:42.453886+11:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-b3og","title":"Fix TestImportBugIntegration deadlock in importer_test.go","description":"Code health review found internal/importer/importer_test.go has TestImportBugIntegration skipped with:\n\nTODO: Test hangs due to database deadlock - needs investigation\n\nThis indicates a potential unresolved concurrency issue in the importer. The test has been skipped for an unknown duration.\n\nFix: Investigate the deadlock, fix the underlying issue, and re-enable the test.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T18:17:22.103838-08:00","updated_at":"2025-12-17T23:13:40.529671-08:00","closed_at":"2025-12-17T17:25:26.645901-08:00","dependencies":[{"issue_id":"bd-b3og","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.740642-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-b6xo","title":"Remove or fix ClearDirtyIssues() - race condition risk (bd-52)","description":"Code health review found internal/storage/sqlite/dirty.go still exposes old ClearDirtyIssues() method (lines 103-108) which clears ALL dirty issues without checking what was actually exported.\n\nData loss risk: If export fails after some issues written to JSONL but before ClearDirtyIssues called, changes to remaining dirty issues will be lost.\n\nThe safer ClearDirtyIssuesByID() (lines 113-132) exists and clears only exported issues.\n\nFix: Either remove old method or mark it deprecated and ensure no code paths use it.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-16T18:17:20.534625-08:00","updated_at":"2025-12-17T23:13:40.530703-08:00","closed_at":"2025-12-17T18:59:18.693791-08:00","dependencies":[{"issue_id":"bd-b6xo","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.633738-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-bgm","title":"Fix unparam unused parameter in cmd/bd/doctor.go:1879","description":"Linting issue: checkGitHooks - path is unused (unparam) at cmd/bd/doctor.go:1879:20. Error: func checkGitHooks(path string) doctorCheck {","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:25.270293252-07:00","updated_at":"2025-12-17T23:13:40.532991-08:00","closed_at":"2025-12-17T16:46:11.026693-08:00"} +{"id":"bd-bgr","title":"Test stdin 2","description":"Description from stdin test\n","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T17:28:05.41434-08:00","updated_at":"2025-12-17T17:28:33.833288-08:00","closed_at":"2025-12-17T17:28:33.833288-08:00"} +{"id":"bd-bw6","title":"Fix G104 errors unhandled in internal/storage/sqlite/queries.go:1181","description":"Linting issue: G104: Errors unhandled (gosec) at internal/storage/sqlite/queries.go:1181:4. Error: rows.Close()","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:09.008444133-07:00","updated_at":"2025-12-17T23:13:40.536627-08:00","closed_at":"2025-12-17T16:46:11.029355-08:00"} +{"id":"bd-bwk2","title":"Centralize error handling patterns in storage layer","description":"80+ instances of inconsistent error handling across sqlite.go with mix of %w, %v, and no wrapping.\n\nLocation: internal/storage/sqlite/sqlite.go (throughout)\n\nProblem:\n- Some use fmt.Errorf(\"op failed: %w\", err) - correct wrapping\n- Some use fmt.Errorf(\"op failed: %v\", err) - loses error chain\n- Some return err directly - no context\n- Hard to debug production issues\n- Can't distinguish error types\n\nSolution: Create internal/storage/sqlite/errors.go:\n- Define sentinel errors (ErrNotFound, ErrInvalidID, etc.)\n- Create wrapDBError(op string, err error) helper\n- Convert sql.ErrNoRows to ErrNotFound\n- Always wrap with operation context\n\nImpact: Lost error context; inconsistent messages; hard to debug\n\nEffort: 5-7 hours","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-16T14:51:54.974909-08:00","updated_at":"2025-11-16T14:51:54.974909-08:00"} +{"id":"bd-bxha","title":"Default to YES for git hooks and merge driver installation","description":"Currently bd init prompts user to install git hooks and merge driver, but setup is incomplete if user declines. Change to install by default unless --skip-hooks or --skip-merge-driver flags are passed. Better safe defaults. If installation fails, warn user and suggest bd doctor --fix.","status":"open","priority":1,"issue_type":"feature","created_at":"2025-11-21T23:16:10.172238-08:00","updated_at":"2025-11-21T23:16:28.369137-08:00","dependencies":[{"issue_id":"bd-bxha","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:10.173034-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-by0d","title":"Work on beads-ldv: Fix bd graph crashes with nil pointer ...","description":"Work on beads-ldv: Fix bd graph crashes with nil pointer dereference (GH#657). Fix nil pointer in computeDependencyCounts at graph.go:428. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:27.829359-08:00","updated_at":"2025-12-19T23:28:32.428314-08:00","closed_at":"2025-12-19T23:20:49.038441-08:00","close_reason":"Fixed nil pointer in computeDependencyCounts by passing subgraph instead of nil"} +{"id":"bd-c2xs","title":"Exclude pinned issues from bd blocked","description":"Update bd blocked to exclude pinned issues. Pinned issues are context markers and should not appear in the blocked work list.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:44.684242-08:00","updated_at":"2025-12-18T23:33:44.684242-08:00","dependencies":[{"issue_id":"bd-c2xs","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.521323-08:00","created_by":"daemon"},{"issue_id":"bd-c2xs","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.736681-08:00","created_by":"daemon"}]} +{"id":"bd-c3u","title":"Review PR #512: clarify bd ready docs","description":"Review and merge PR #512 from aspiers. This PR clarifies what bd ready does after git pull in README.md. Simple 1-line change. URL: https://github.com/anthropics/beads/pull/512","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:15:13.405161+11:00","updated_at":"2025-12-13T07:07:29.641265-08:00","closed_at":"2025-12-13T07:07:29.641265-08:00"} +{"id":"bd-c83r","title":"Prevent multiple daemons from running on the same repo","description":"Multiple bd daemons running on the same repo clone causes race conditions and data corruption risks.\n\n**Problem:**\n- Nothing prevents spawning multiple daemons for the same repository\n- Multiple daemons watching the same files can conflict during sync operations\n- Observed: 4 daemons running simultaneously caused sync race condition\n\n**Solution:**\nImplement daemon singleton enforcement per repo:\n1. Use a lock file (e.g., .beads/.daemon.lock) with PID\n2. On daemon start, check if lock exists and process is alive\n3. If stale lock (dead PID), clean up and acquire lock\n4. If active daemon exists, either:\n - Exit with message 'daemon already running (PID xxx)'\n - Or offer --replace flag to kill existing and take over\n5. Release lock on graceful shutdown\n\n**Edge cases to handle:**\n- Daemon crashes without releasing lock (stale PID detection)\n- Multiple repos in same directory tree (each repo gets own lock)\n- Race between two daemons starting simultaneously (atomic lock acquisition)","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-13T06:37:23.377131-08:00","updated_at":"2025-12-16T01:14:49.50347-08:00","closed_at":"2025-12-14T17:34:14.990077-08:00"} +{"id":"bd-cb64c226.1","title":"Performance Validation","description":"Confirm no performance regression from cache removal","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T10:50:15.126019-07:00","updated_at":"2025-12-17T23:18:29.108883-08:00","close_reason":"Closed","deleted_at":"2025-12-17T23:18:29.108883-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-cb64c226.10","title":"Delete server_cache_storage.go","description":"Remove the entire cache implementation file (~286 lines)","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:38.729299-07:00","updated_at":"2025-12-17T23:18:29.110716-08:00","close_reason":"Closed","deleted_at":"2025-12-17T23:18:29.110716-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-cb64c226.12","title":"Remove Storage Cache from Server Struct","description":"Eliminate cache fields and use s.storage directly","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:25.474412-07:00","updated_at":"2025-12-17T23:18:29.111039-08:00","close_reason":"Closed","deleted_at":"2025-12-17T23:18:29.111039-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-cb64c226.13","title":"Audit Current Cache Usage","description":"**Summary:** Comprehensive audit of storage cache usage revealed minimal dependency across server components, with most calls following a consistent pattern. Investigation confirmed cache was largely unnecessary in single-repository daemon architecture.\n\n**Key Decisions:** \n- Remove all cache-related environment variables\n- Delete server struct cache management fields\n- Eliminate cache-specific test files\n- Deprecate req.Cwd routing logic\n\n**Resolution:** Cache system will be completely removed, simplifying server storage access and reducing unnecessary complexity with negligible performance impact.","notes":"AUDIT COMPLETE\n\ngetStorageForRequest() callers: 17 production + 11 test\n- server_issues_epics.go: 8 calls\n- server_labels_deps_comments.go: 4 calls \n- server_export_import_auto.go: 2 calls\n- server_compact.go: 2 calls\n- server_routing_validation_diagnostics.go: 1 call\n- server_eviction_test.go: 11 calls (DELETE entire file)\n\nPattern everywhere: store, err := s.getStorageForRequest(req) ā†’ store := s.storage\n\nreq.Cwd usage: Only for multi-repo routing. Local daemon always serves 1 repo, so routing is unused.\n\nMCP server: Uses separate daemons per repo (no req.Cwd usage found). NOT affected by cache removal.\n\nCache env vars to deprecate:\n- BEADS_DAEMON_MAX_CACHE_SIZE (used in server_core.go:63)\n- BEADS_DAEMON_CACHE_TTL (used in server_core.go:72)\n- BEADS_DAEMON_MEMORY_THRESHOLD_MB (used in server_cache_storage.go:47)\n\nServer struct fields to remove:\n- storageCache, cacheMu, maxCacheSize, cacheTTL, cleanupTicker, cacheHits, cacheMisses\n\nTests to delete:\n- server_eviction_test.go (entire file - 9 tests)\n- limits_test.go cache assertions\n\nSpecial consideration: ValidateDatabase endpoint uses findDatabaseForCwd() outside cache. Verify if used, then remove or inline.\n\nSafe to proceed with removal - cache always had 1 entry in local daemon model.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:19.3723-07:00","updated_at":"2025-12-17T23:18:29.111369-08:00","close_reason":"Closed","deleted_at":"2025-12-17T23:18:29.111369-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-cb64c226.6","title":"Verify MCP Server Compatibility","description":"Ensure MCP server works with cache-free daemon","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:56:03.241615-07:00","updated_at":"2025-12-17T23:18:29.109644-08:00","close_reason":"Closed","deleted_at":"2025-12-17T23:18:29.109644-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-cb64c226.8","title":"Update Metrics and Health Endpoints","description":"Remove cache-related metrics from health/metrics endpoints","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:49.212047-07:00","updated_at":"2025-12-17T23:18:29.110022-08:00","close_reason":"Closed","deleted_at":"2025-12-17T23:18:29.110022-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-cb64c226.9","title":"Remove Cache-Related Tests","description":"Delete or update tests that assume multi-repo caching","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-27T22:55:44.511897-07:00","updated_at":"2025-12-17T23:18:29.110385-08:00","close_reason":"Closed","deleted_at":"2025-12-17T23:18:29.110385-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-cbed9619.1","title":"Fix multi-round convergence for N-way collisions","description":"**Summary:** Multi-round collision resolution was identified as a critical issue preventing complete synchronization across distributed clones. The problem stemmed from incomplete final pulls that didn't fully propagate all changes between system instances.\n\n**Key Decisions:**\n- Implement multi-round sync mechanism\n- Ensure bounded convergence (ā‰¤N rounds)\n- Guarantee idempotent import without data loss\n\n**Resolution:** Developed a sync strategy that ensures all clones converge to the same complete set of issues, unblocking the bd-cbed9619 epic and improving distributed system reliability.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T21:22:21.486109-07:00","updated_at":"2025-12-17T23:18:29.111713-08:00","close_reason":"Closed","deleted_at":"2025-12-17T23:18:29.111713-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-cbed9619.2","title":"Implement content-first idempotent import","description":"**Summary:** Refactored issue import to be content-first and idempotent, ensuring consistent data synchronization across multiple import rounds by prioritizing content hash matching over ID-based updates.\n\n**Key Decisions:** \n- Implement content hash as primary matching mechanism\n- Create global collision resolution algorithm\n- Ensure importing same data multiple times results in no-op\n\n**Resolution:** The new import strategy guarantees predictable convergence across distributed systems, solving rename detection and collision handling while maintaining data integrity during multi-stage imports.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:38:25.671302-07:00","updated_at":"2025-12-17T23:18:29.112032-08:00","close_reason":"Closed","dependencies":[{"issue_id":"bd-cbed9619.2","depends_on_id":"bd-cbed9619.5","type":"blocks","created_at":"2025-10-28T18:39:28.360026-07:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-cbed9619.2","depends_on_id":"bd-cbed9619.4","type":"blocks","created_at":"2025-10-28T18:39:28.383624-07:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-cbed9619.2","depends_on_id":"bd-cbed9619.3","type":"blocks","created_at":"2025-10-28T18:39:28.407157-07:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-17T23:18:29.112032-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-cbed9619.3","title":"Implement global N-way collision resolution algorithm","description":"**Summary:** Replaced pairwise collision resolution with a global N-way algorithm that deterministically resolves issue ID conflicts across multiple clones. The new approach groups collisions, deduplicates by content hash, and assigns sequential IDs to ensure consistent synchronization.\n\n**Key Decisions:**\n- Use content hash for global, stable sorting\n- Group collisions by base ID\n- Assign sequential IDs based on sorted unique versions\n- Eliminate order-dependent remapping logic\n\n**Resolution:** Implemented ResolveNWayCollisions function that guarantees deterministic issue ID assignment across multiple synchronization scenarios, solving the core challenge of maintaining consistency in distributed systems with potential conflicts.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:37:42.85616-07:00","updated_at":"2025-12-17T23:18:29.112335-08:00","close_reason":"Closed","dependencies":[{"issue_id":"bd-cbed9619.3","depends_on_id":"bd-cbed9619.5","type":"blocks","created_at":"2025-10-28T18:39:28.30886-07:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-cbed9619.3","depends_on_id":"bd-cbed9619.4","type":"blocks","created_at":"2025-10-28T18:39:28.336312-07:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-17T23:18:29.112335-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-cbed9619.4","title":"Make DetectCollisions read-only (separate detection from modification)","description":"**Summary:** The project restructured the collision detection process in the database to separate read-only detection from state modification, eliminating race conditions and improving system reliability. This was achieved by introducing a two-phase approach: first detecting potential collisions, then applying resolution separately.\n\n**Key Decisions:**\n- Create read-only DetectCollisions method\n- Add RenameDetail to track potential issue renames\n- Implement atomic ApplyCollisionResolution function\n- Separate detection logic from database modification\n\n**Resolution:** The refactoring creates a more robust, composable collision handling mechanism that prevents partial failures and maintains database consistency during complex issue import scenarios.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:37:09.652326-07:00","updated_at":"2025-12-17T23:18:29.112637-08:00","close_reason":"Closed","dependencies":[{"issue_id":"bd-cbed9619.4","depends_on_id":"bd-cbed9619.5","type":"blocks","created_at":"2025-10-28T18:39:28.285653-07:00","created_by":"daemon","metadata":"{}"}],"deleted_at":"2025-12-17T23:18:29.112637-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-cbed9619.5","title":"Add content-addressable identity to Issue type","description":"**Summary:** Added content-addressable identity to Issue type by implementing a ContentHash field that generates a unique SHA256 fingerprint based on semantic issue content. This resolves issue identification challenges when multiple system instances create issues with identical IDs but different contents.\n\n**Key Decisions:**\n- Use SHA256 for content hashing\n- Hash excludes ID and timestamps\n- Compute hash automatically at creation/import time\n- Add database column for hash storage\n\n**Resolution:** Successfully implemented a deterministic content hashing mechanism that enables reliable issue identification across distributed systems, improving data integrity and collision detection.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-10-28T18:36:44.914967-07:00","updated_at":"2025-12-17T23:18:29.112933-08:00","close_reason":"Closed","deleted_at":"2025-12-17T23:18:29.112933-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-cils","title":"Work on beads-2nh: Fix gt spawn --issue to find issues in...","description":"Work on beads-2nh: Fix gt spawn --issue to find issues in rig's beads database. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:47.573854-08:00","updated_at":"2025-12-20T00:49:51.927884-08:00","closed_at":"2025-12-19T23:28:28.605343-08:00","close_reason":"Completed - fixed spawn beads path in gastown"} +{"id":"bd-crgr","title":"GH#517: Claude sets priority wrong on new install","description":"Claude uses 'medium/high/low' for priority instead of P0-P4. Update bd prime/onboard output to be clearer about priority syntax. See GitHub issue #517.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:34.803084-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-czss","title":"Update CHANGELOG.md with release notes","description":"Add meaningful release notes to CHANGELOG.md describing what changed in {{version}}","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:55:59.909641-08:00","updated_at":"2025-12-20T17:59:26.262153-08:00","closed_at":"2025-12-20T01:23:51.407302-08:00","dependencies":[{"issue_id":"bd-czss","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:14.862724-08:00","created_by":"daemon"},{"issue_id":"bd-czss","depends_on_id":"bd-qkw9","type":"blocks","created_at":"2025-12-19T22:56:23.145894-08:00","created_by":"daemon"}]} +{"id":"bd-d148","title":"GH#483: Pre-commit hook fails unnecessarily when .beads removed","description":"Pre-commit hook fails on bd sync when .beads directory exists but user is on branch without beads. Should exit gracefully. See GitHub issue #483.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:40.049785-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-d3e5","title":"Test issue 2","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-14T11:21:13.878680387-07:00","updated_at":"2025-12-14T11:21:13.878680387-07:00","closed_at":"2025-12-14T00:32:13.890274-08:00"} +{"id":"bd-d4jl","title":"Commit and push release","description":"git add -A \u0026\u0026 git commit -m 'chore: bump version to 0.32.1' \u0026\u0026 git push","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:21.928138-08:00","updated_at":"2025-12-20T21:57:12.81943-08:00","closed_at":"2025-12-20T21:57:12.81943-08:00","close_reason":"Committed and pushed to origin","dependencies":[{"issue_id":"bd-d4jl","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:21.930015-08:00","created_by":"daemon"},{"issue_id":"bd-d4jl","depends_on_id":"bd-tj00","type":"blocks","created_at":"2025-12-20T21:53:29.884457-08:00","created_by":"daemon"}]} +{"id":"bd-d73u","title":"Re: Thread Test 2","description":"Great! Thread is working well.","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:46.655093-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-d73u","depends_on_id":"bd-vpan","type":"replies-to","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} +{"id":"bd-de6","title":"Fix FindBeadsDir to prioritize main repo .beads for worktrees","description":"The FindBeadsDir function should prioritize finding .beads in the main repository root when accessed from a worktree, rather than finding worktree-local .beads directories. This ensures proper sharing of the database across all worktrees.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-07T16:48:36.883117467-07:00","updated_at":"2025-12-07T16:48:36.883117467-07:00"} +{"id":"bd-dhza","title":"Reduce global state in cmd/bd/main.go (25+ variables)","description":"Code health review found main.go has 25+ global variables (lines 57-112):\n\n- dbPath, actor, store, jsonOutput, daemonClient, noDaemon\n- rootCtx, rootCancel, autoFlushEnabled\n- isDirty (marked 'USED BY LEGACY CODE')\n- needsFullExport (marked 'USED BY LEGACY CODE')\n- flushTimer (marked 'DEPRECATED')\n- flushMutex, storeMutex, storeActive\n- flushFailureCount, lastFlushError, flushManager\n- skipFinalFlush, autoImportEnabled\n- versionUpgradeDetected, previousVersion, upgradeAcknowledged\n\nImpact:\n- Hard to test individual commands\n- Race conditions possible\n- State leakage between commands\n\nFix: Move toward dependency injection. Remove deprecated variables. Consider cmd/bd/internal package.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:29.643293-08:00","updated_at":"2025-12-16T18:17:29.643293-08:00","dependencies":[{"issue_id":"bd-dhza","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.492112-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-dp4w","title":"Test message","description":"This is a test message body","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:11:58.467876-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} +{"id":"bd-dqu8","title":"Restart running daemons","description":"Kill and restart any running bd daemons to pick up new version: pkill -f 'bd daemon' \u0026\u0026 bd daemon --start","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T00:32:26.559311-08:00","updated_at":"2025-12-20T00:32:59.123766-08:00","closed_at":"2025-12-20T00:32:59.123766-08:00","close_reason":"Daemons restarted - now running 0.30.7","dependencies":[{"issue_id":"bd-dqu8","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-20T00:32:39.36213-08:00","created_by":"daemon"},{"issue_id":"bd-dqu8","depends_on_id":"bd-fgw3","type":"blocks","created_at":"2025-12-20T00:32:39.427846-08:00","created_by":"daemon"}]} +{"id":"bd-dsdh","title":"Document sync.branch 'always dirty' working tree behavior","description":"## Context\n\nWhen sync.branch is configured, the .beads/issues.jsonl file in main's working tree is ALWAYS dirty. This is by design:\n\n1. bd sync commits to beads-sync branch (via worktree)\n2. bd sync copies JSONL to main's working tree (so CLI commands work)\n3. This copy is NOT committed to main (to reduce commit noise)\n\nContributors who watch main branch history pushed for sync.branch to avoid constant beads commit noise. But users need to understand the trade-off.\n\n## Documentation Needed\n\nUpdate README.md sync.branch section with:\n\n1. **Clear explanation** of why .beads/ is always dirty on main\n2. **\"Be Zen about it\"** - this is expected, not a bug\n3. **Workflow options:**\n - Accept dirty state, use `bd sync --merge` periodically to snapshot to main\n - Or disable sync.branch if clean working tree is more important\n4. **Shell alias tip** to hide beads from git status:\n ```bash\n alias gs='git status -- \":!.beads/\"'\n ```\n5. **When to merge**: releases, milestones, or periodic snapshots\n\n## Related\n\n- bd-7b7h: Fix that allows bd sync --merge to work with dirty .beads/\n- bd-elqd: Investigation that identified this as expected behavior","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T23:16:12.253559-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-dsp","title":"Test stdin body-file","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T17:27:32.098806-08:00","updated_at":"2025-12-17T17:28:33.832749-08:00","closed_at":"2025-12-17T17:28:33.832749-08:00"} +{"id":"bd-dwh","title":"Implement or remove ExpectExit/ExpectStdout verification fields","description":"The Verification struct in internal/types/workflow.go has ExpectExit and ExpectStdout fields that are never used by workflowVerifyCmd. Either implement the functionality or remove the dead fields.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-17T22:23:02.708627-08:00","updated_at":"2025-12-17T22:34:07.300348-08:00","closed_at":"2025-12-17T22:34:07.300348-08:00"} +{"id":"bd-dyy","title":"Review PR #513: fix hooks install docs","description":"Review and merge PR #513 from aspiers. This PR fixes incorrect docs for how to install git hooks - updates README to use bd hooks install instead of removed install.sh. Simple 1-line change. URL: https://github.com/anthropics/beads/pull/513","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:15:14.838772+11:00","updated_at":"2025-12-13T07:07:19.718544-08:00","closed_at":"2025-12-13T07:07:19.718544-08:00"} +{"id":"bd-e1085716","title":"bd validate - Comprehensive health check","description":"Run all validation checks in one command.\n\nChecks:\n- Duplicates\n- Orphaned dependencies\n- Test pollution\n- Git conflicts\n\nSupports --fix-all for auto-repair.\n\nDepends on bd-cbed9619.1, bd-0dcea000, bd-31aab707, bd-9826b69a.\n\nFiles: cmd/bd/validate.go (new)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-10-29T23:05:13.980679-07:00","updated_at":"2025-12-17T22:58:34.562008-08:00","closed_at":"2025-12-17T22:58:34.562008-08:00","close_reason":"Closed"} +{"id":"bd-elqd","title":"Systematic bd sync stability investigation","description":"## Context\n\nbd sync has chronic instability issues that have persisted since inception:\n- issues.jsonl is always dirty after push\n- bd sync often creates messes requiring manual cleanup\n- Problems escalating despite accumulated bug fixes\n- Workarounds are getting increasingly draconian\n\n## Goal\n\nSystematically observe and diagnose bd sync failures rather than applying band-aid fixes.\n\n## Approach\n\n1. Start fresh session with latest binary (all fixes applied)\n2. Run bd sync and carefully observe what happens\n3. Document exact sequence of events when things go wrong\n4. File specific issues for each discrete problem identified\n5. Track the root causes, not just symptoms\n\n## Test Environment\n\n- Fresh clone or clean state\n- Latest bd binary with all bug fixes\n- Monitor both local and remote JSONL state\n- Check for timing issues, race conditions, merge conflicts\n\n## Success Criteria\n\n- Identify root causes of sync instability\n- Create actionable issues for each problem\n- Eventually achieve stable bd sync (no manual intervention needed)","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T22:57:25.35289-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-eyrh","title":"šŸ¤ HANDOFF: Review remaining beads PRs","description":"## Current State\nJust merged PR #653 (doctor refactor) and added tests to restore coverage.\n\n## Remaining Open PRs to Review\nRun `gh pr list --repo steveyegge/beads` to see current list. As of handoff:\n\n1. #655 - feat: Linear Integration (jblwilliams)\n2. #651 - feat(audit): agent audit trail (dchichkov)\n3. #648 - Stop init creating redundant @AGENTS.md (maphew)\n4. #646 - fix(unix): handle Statfs field types (jordanhubbard)\n5. #645 - feat: /plan-to-beads Claude Code command (petebytes)\n6. #642, #641, #640 - sync branch fixes (cpdata)\n\n## Review Checklist\n- Check CI status with `gh pr checks \u003cnum\u003e --repo steveyegge/beads`\n- Verify no .beads/ data leaking (we have a hook now)\n- Review code quality\n- Merge good ones, request changes on problematic ones\n\n## Notes\n- User wants us to be proactive about merging good PRs\n- Can add tests ourselves if coverage drops","status":"closed","priority":2,"issue_type":"message","created_at":"2025-12-19T17:44:34.149837-08:00","updated_at":"2025-12-19T23:28:32.428731-08:00","closed_at":"2025-12-19T17:53:20.386937-08:00","sender":"Steve Yegge","ephemeral":true} +{"id":"bd-eyto","title":"Time-dependent tests may be flaky near TTL boundary","description":"Several tombstone merge tests use time.Now() to create test data: time.Now().Add(-24 * time.Hour), time.Now().Add(-60 * 24 * time.Hour), etc. While these work reliably in practice (24h vs 30d TTL has large margin), they could theoretically be flaky if: 1) Tests run slowly, 2) System clock changes during test, 3) TTL constants change. Recommendation: Consider using a fixed reference time or time injection for deterministic tests. Lower priority since current margin is large. Files: internal/merge/merge_test.go:1337-1338, 1352-1353, 1548-1549, 1590-1591","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-05T16:37:02.348143-08:00","updated_at":"2025-12-05T16:37:02.348143-08:00"} +{"id":"bd-f3ll","title":"Merge: bd-ot0w","description":"branch: polecat/dementus\ntarget: main\nsource_issue: bd-ot0w\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:20:33.495772-08:00","updated_at":"2025-12-19T23:20:33.495772-08:00"} +{"id":"bd-f5cc","title":"Thread Test","description":"Testing the thread feature","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:01.244501-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-f5cc","depends_on_id":"bd-x36g","type":"supersedes","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} +{"id":"bd-fa2h","title":"šŸ¤ HANDOFF: v0.31.0 released, molecules discussion","description":"Session completed 0.31.0 release and had important molecules discussion.\n\n## Completed\n- v0.31.0 released (deferred status, audit trail, directory labels, etc.)\n- Fixed lint issues, hook version markers, codesigning\n- All CI green, artifacts verified\n\n## Filed Issues\n- bd-usro: Rename template instantiate ā†’ bd mol bond\n- bd-y8bj: Auto-detect identity for bd mail (P1 bug)\n- gt-975: Molecule execution support for polecats/crew\n- gt-976: Crew lifecycle support in Deacon\n\n## Key Insight\nMolecules are the future - TodoWrite is ephemeral, molecules are persistent institutional memory on the world chain. I tried to use TodoWrite for version bump and missed steps (codesigning, MCP verification). Molecules would have caught this.\n\n## Next Steps\n- bd mol bond implementation is priority\n- Max has gt-976 for crew lifecycle (enables automated refresh mid-molecule)\n\nCheck bd ready and gt-975/976 status.","status":"open","priority":2,"issue_type":"message","assignee":"beads/crew/dave","created_at":"2025-12-20T17:23:09.889562-08:00","updated_at":"2025-12-20T17:23:09.889562-08:00","sender":"Steve Yegge","ephemeral":true} +{"id":"bd-fgw3","title":"Update local installation","description":"Run install script or brew upgrade to get new version locally: curl -fsSL .../install.sh | bash","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:05.052016-08:00","updated_at":"2025-12-20T00:49:51.928221-08:00","closed_at":"2025-12-20T00:25:52.805029-08:00","dependencies":[{"issue_id":"bd-fgw3","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.248427-08:00","created_by":"daemon"},{"issue_id":"bd-fgw3","depends_on_id":"bd-si4g","type":"blocks","created_at":"2025-12-19T22:56:23.497325-08:00","created_by":"daemon"}]} +{"id":"bd-fi05","title":"bd sync fails with orphaned issues and duplicate ID conflict","description":"After fixing the deleted_at TEXT column scanning bug (commit 18b1eb2), bd sync still fails with two issues:\n\n1. Orphan Detection Warning: 12 orphaned child issues whose parents no longer exist (bd-cb64c226.* and bd-cbed9619.*)\n\n2. Import Failure: UNIQUE constraint failed for bd-360 - this tombstone exists in both DB and JSONL\n\nError: \"Import failed: error creating depth-0 issues: bulk insert issues: failed to insert issue bd-360: sqlite3: constraint failed: UNIQUE constraint failed: issues.id\"\n\nFix options:\n- Delete orphaned child issues with bd delete\n- Resolve bd-360 duplicate (in deletions.jsonl vs tombstone in DB)\n- Reset sync branch: git branch -f beads-sync main \u0026\u0026 git push --force-with-lease origin beads-sync","notes":"Fixed tombstone constraint violation bug. When deleting closed issues, the CHECK constraint (status = 'closed') = (closed_at IS NOT NULL) was violated because CreateTombstone didn't clear closed_at. Fix: set closed_at = NULL in tombstone creation SQL.\n\nThe sync data corruption (orphaned issues in beads-sync branch) requires manual cleanup: reset sync branch with 'git branch -f beads-sync main \u0026\u0026 git push --force-with-lease origin beads-sync'","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-13T07:14:33.831346-08:00","updated_at":"2025-12-13T10:50:48.545465-08:00","closed_at":"2025-12-13T07:30:33.843986-08:00"} +{"id":"bd-fom","title":"Remove all deletions.jsonl code except migration","description":"There's deletions manifest code spread across the entire codebase that should have been removed after tombstone migration:\n\nFiles with deletions code (non-migration):\n- internal/deletions/ - entire package\n- cmd/bd/sync.go - 25+ references, auto-compact, sanitize\n- cmd/bd/delete.go - dual-writes to deletions.jsonl\n- internal/importer/importer.go - checks deletions manifest\n- internal/syncbranch/worktree.go - merges deletions.jsonl\n- cmd/bd/doctor/fix/sync.go - cleanupDeletionsManifest\n- cmd/bd/doctor/fix/deletions.go - HydrateDeletionsManifest\n- cmd/bd/integrity.go - checks deletions for data loss\n- cmd/bd/deleted.go - entire command\n- cmd/bd/compact.go - pruneDeletionsManifest\n- cmd/bd/doctor.go - checkDeletionsManifest\n- Plus many more\n\nAction: Aggressively remove all non-migration deletions code. Tombstones are the only deletion mechanism now.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T13:29:04.960863-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-fu83","title":"Fix daemon/direct mode inconsistency in relate and duplicate commands","description":"The relate.go and duplicate.go commands have inconsistent daemon/direct mode handling:\n\nWhen daemonClient is connected, they resolve IDs via RPC but then perform updates directly via store.UpdateIssue(), bypassing the daemon.\n\nAffected locations:\n- relate.go:125-139 (runRelate update)\n- relate.go:235-246 (runUnrelate update) \n- duplicate.go:120 (runDuplicate update)\n- duplicate.go:207 (runSupersede update)\n\nShould either use RPC for updates when daemon is running, or document why direct access is intentional.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-16T20:52:54.164189-08:00","updated_at":"2025-12-16T20:52:54.164189-08:00"} +{"id":"bd-fx7v","title":"Improve test coverage for cmd/bd/doctor/fix (23.9% ā†’ 50%)","description":"The doctor/fix package has only 23.9% test coverage. The doctor fix functionality is important for troubleshooting.\n\nCurrent coverage: 23.9%\nTarget coverage: 50%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:05.67127-08:00","updated_at":"2025-12-13T21:01:20.839298-08:00"} +{"id":"bd-g9eu","title":"Investigate TestRoutingIntegration failure","description":"TestRoutingIntegration/maintainer_with_SSH_remote failed during pre-commit check with \"expected role maintainer, got contributor\".\nThis occurred while running `go test -short ./...` on darwin/arm64.\nThe failure appears unrelated to storage/sqlite changes.\nNeed to investigate if this is a flaky test or environmental issue.","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-20T15:55:19.337094-08:00","updated_at":"2025-11-20T15:55:19.337094-08:00"} +{"id":"bd-gjla","title":"Test Thread","description":"Initial message for threading test","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:19:51.704324-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-gjla","depends_on_id":"bd-f5cc","type":"duplicates","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} +{"id":"bd-gocx","title":"Run bump-version.sh 0.32.1","description":"Execute ./scripts/bump-version.sh 0.32.1 to update all version references","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:18.470174-08:00","updated_at":"2025-12-20T21:54:54.500836-08:00","closed_at":"2025-12-20T21:54:54.500836-08:00","close_reason":"Version bumped to 0.32.1","dependencies":[{"issue_id":"bd-gocx","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:18.471793-08:00","created_by":"daemon"},{"issue_id":"bd-gocx","depends_on_id":"bd-x3j8","type":"blocks","created_at":"2025-12-20T21:53:29.688436-08:00","created_by":"daemon"}]} +{"id":"bd-gxq","title":"Simplify bd onboard to minimal AGENTS.md snippet pointing to bd prime","description":"## Context\nGH#604 raised concerns about bd onboard bloating AGENTS.md with ~100+ lines of static instructions that:\n- Load every session whether beads is being used or not\n- Get stale when bd upgrades\n- Waste tokens\n\n## Solution\nSimplify `bd onboard` to output a minimal snippet (~2 lines) that points to `bd prime`:\n\n```markdown\n## Issue Tracking\nThis project uses beads (`bd`) for issue tracking.\nRun `bd prime` for workflow context, or hooks auto-inject it.\n```\n\n## Rationale\n- `bd prime` is dynamic, concise (~80 lines), and always matches installed bd version\n- Hooks already auto-inject `bd prime` at session start when .beads/ detected\n- AGENTS.md only needs to mention beads exists, not contain full instructions\n\n## Implementation\n1. Update `cmd/bd/onboard.go` to output minimal snippet\n2. Keep `--output` flag for BD_GUIDE.md generation (may still be useful)\n3. Update help text to explain the new approach","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T11:42:38.604891-08:00","updated_at":"2025-12-18T11:47:28.020419-08:00","closed_at":"2025-12-18T11:47:28.020419-08:00","close_reason":"Implemented: bd onboard now outputs minimal snippet pointing to bd prime"} +{"id":"bd-haze","title":"Fix beads-9yc: pinned column missing from schema. gt mail...","description":"Fix beads-9yc: pinned column missing from schema. gt mail send fails because some beads DBs lack the pinned column. Add migration to ensure it exists.","status":"in_progress","priority":2,"issue_type":"task","created_at":"2025-12-19T15:05:33.394801-08:00","updated_at":"2025-12-19T15:05:33.524491-08:00"} +{"id":"bd-hkr6","title":"GH#518: Document bd setup command","description":"bd setup is undiscoverable. Add to README/docs. Currently only findable by grepping source. See GitHub issue #518.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:54.664668-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-hlsw","title":"Add sync resilience guardrails for forced pushes and prefix mismatches","description":"Beads can get into unrecoverable sync states when remote forces pushes occur (e.g., rebases) combined with prefix mismatches from multi-worker scenarios. Add detection, prevention, and auto-recovery features to handle this gracefully.","status":"open","priority":2,"issue_type":"epic","created_at":"2025-12-14T10:40:14.872875259-07:00","updated_at":"2025-12-14T10:40:14.872875259-07:00"} +{"id":"bd-hlsw.3","title":"Auto-recovery mode (bd sync --auto-recover)","description":"Add bd sync --auto-recover flag that: detects problematic sync state, backs up .beads/issues.db with timestamp, rebuilds DB from JSONL atomically, verifies consistency, reports what was fixed. Provides safety valve when sync integrity fails.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-14T10:40:20.599836875-07:00","updated_at":"2025-12-14T10:40:20.599836875-07:00","dependencies":[{"issue_id":"bd-hlsw.3","depends_on_id":"bd-hlsw","type":"parent-child","created_at":"2025-12-14T10:40:20.600435888-07:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-hlsw.4","title":"Sync branch integrity guards","description":"Track sync branch parent commit. If sync branch was force-pushed, warn user and require confirmation before proceeding. Add option to reset to remote if user accepts rebase. Prevents silent corruption from forced pushes.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-14T10:40:20.645402352-07:00","updated_at":"2025-12-14T10:40:20.645402352-07:00","dependencies":[{"issue_id":"bd-hlsw.4","depends_on_id":"bd-hlsw","type":"parent-child","created_at":"2025-12-14T10:40:20.646425761-07:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-hnkg","title":"GH#540: Add silent quick-capture mode (bd q)","description":"Add bd q alias for quick capture that outputs only issue ID. Useful for piping/scripting. See GitHub issue #540.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:03:38.260135-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} +{"id":"bd-hvng","title":"Merge: bd-w193","description":"branch: polecat/nux\ntarget: main\nsource_issue: bd-w193\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:23:47.496139-08:00","updated_at":"2025-12-19T23:23:47.496139-08:00"} +{"id":"bd-hw3w","title":"Update info.go versionChanges","description":"Add entry to versionChanges in cmd/bd/info.go with agent-actionable changes for {{version}}","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:01.016558-08:00","updated_at":"2025-12-20T17:59:26.262511-08:00","closed_at":"2025-12-20T01:23:50.3879-08:00","dependencies":[{"issue_id":"bd-hw3w","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:14.941855-08:00","created_by":"daemon"},{"issue_id":"bd-hw3w","depends_on_id":"bd-czss","type":"blocks","created_at":"2025-12-19T22:56:23.219257-08:00","created_by":"daemon"}]} +{"id":"bd-hy9p","title":"Add --body-file flag to bd create for reading descriptions from files","description":"## Problem\n\nCreating issues with long/complex descriptions via CLI requires shell escaping gymnastics:\n\n```bash\n# Current workaround - awkward heredoc quoting\nbd create --title=\"...\" --description=\"$(cat \u003c\u003c'EOF'\n...markdown...\nEOF\n)\"\n\n# Often fails with quote escaping errors in eval context\n# Agents resort to writing temp files then reading them\n```\n\n## Proposed Solution\n\nAdd `--body-file` and `--description-file` flags to read description from a file, matching `gh` CLI pattern.\n\n```bash\n# Natural pattern that aligns with training data\ncat \u003e /tmp/desc.md \u003c\u003c 'EOF'\n...markdown content...\nEOF\n\nbd create --title=\"...\" --body-file=/tmp/desc.md\n```\n\n## Implementation\n\n### 1. Add new flags to `bd create`\n\n```go\ncreateCmd.Flags().String(\"body-file\", \"\", \"Read description from file (use - for stdin)\")\ncreateCmd.Flags().String(\"description-file\", \"\", \"Alias for --body-file\")\n```\n\n### 2. Flag precedence\n\n- If `--body-file` or `--description-file` is provided, read from file\n- If value is `-`, read from stdin\n- Otherwise fall back to `--body` or `--description` flag\n- If neither provided, description is empty (current behavior)\n\n### 3. Error handling\n\n- File doesn't exist ā†’ clear error message\n- File not readable ā†’ clear error message\n- stdin specified but not available ā†’ clear error message\n\n## Benefits\n\nāœ… **Matches training data**: `gh issue create --body-file file.txt` is a common pattern\nāœ… **No shell escaping issues**: File content is read directly\nāœ… **Works with any content**: Markdown, special characters, quotes, etc.\nāœ… **Agent-friendly**: Agents already write complex content to temp files\nāœ… **User-friendly**: Easier for humans too when pasting long descriptions\n\n## Related Commands\n\nConsider adding similar support to:\n- `bd update --body-file` (for updating descriptions)\n- `bd comment --body-file` (if/when we add comments)\n\n## Examples\n\n```bash\n# From file\nbd create --title=\"Add new feature\" --body-file=feature.md\n\n# From stdin\necho \"Quick description\" | bd create --title=\"Bug fix\" --body-file=-\n\n# With other flags\nbd create \\\n --title=\"Security issue\" \\\n --type=bug \\\n --priority=0 \\\n --body-file=security-report.md \\\n --label=security\n```\n\n## Testing\n\n- Test with normal files\n- Test with stdin (`-`)\n- Test with non-existent files (error handling)\n- Test with binary files (should handle gracefully)\n- Test with empty files (valid - empty description)\n- Test that `--description-file` and `--body-file` are equivalent aliases","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-11-22T00:02:08.762684-08:00","updated_at":"2025-12-17T23:13:40.536024-08:00","closed_at":"2025-12-17T17:28:52.505239-08:00"} +{"id":"bd-hzvz","title":"Update info.go versionChanges","description":"Add entry to versionChanges in cmd/bd/info.go with agent-actionable changes for 0.30.7","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649359-08:00","updated_at":"2025-12-19T22:57:31.604229-08:00","closed_at":"2025-12-19T22:57:31.604229-08:00","dependencies":[{"issue_id":"bd-hzvz","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.652068-08:00","created_by":"stevey"},{"issue_id":"bd-hzvz","depends_on_id":"bd-2ep8","type":"blocks","created_at":"2025-12-19T22:56:48.652376-08:00","created_by":"stevey"}]} +{"id":"bd-i0rx","title":"Merge: bd-ao0s","description":"branch: polecat/rictus\ntarget: main\nsource_issue: bd-ao0s\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-20T01:13:42.716658-08:00","updated_at":"2025-12-20T01:13:42.716658-08:00"} +{"id":"bd-in7","title":"Test message","description":"Hello world","status":"closed","priority":2,"issue_type":"message","created_at":"2025-12-17T23:16:13.184946-08:00","updated_at":"2025-12-18T17:42:26.000073-08:00","closed_at":"2025-12-17T23:37:38.563369-08:00"} +{"id":"bd-indn","title":"bd template commands fail with daemon mode","description":"The `bd template show` and `bd template instantiate` commands fail with 'Error loading template: no database connection' when daemon is running.\n\n**Reproduction:**\n```bash\nbd daemon --start\nbd template show bd-qqc # Error: no database connection\nbd template show bd-qqc --no-daemon # Works\n```\n\n**Expected:** Template commands should work with daemon like other commands.\n\n**Workaround:** Use `--no-daemon` flag.\n\n**Location:** Likely in cmd/bd/template.go - daemon RPC path not implemented for template operations.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-18T22:57:35.16596-08:00","updated_at":"2025-12-18T22:57:35.16596-08:00"} +{"id":"bd-io8c","title":"Improve test coverage for internal/syncbranch (33.0% ā†’ 70%)","description":"The syncbranch package has only 33.0% test coverage. This package handles git sync operations and is critical for data integrity.\n\nCurrent coverage: 33.0%\nTarget coverage: 70%","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-13T20:43:02.079145-08:00","updated_at":"2025-12-13T21:01:14.972533-08:00"} +{"id":"bd-iq7n","title":"Audit and fix JSONL filename mismatches across all repo clones","description":"## Problem\n\nMultiple clones of repos are configured with different JSONL filenames (issues.jsonl vs beads.jsonl), causing:\n1. JSONL files to be resurrected after deletion (one clone pushes issues.jsonl, another pushes beads.jsonl)\n2. Agents unable to see issues filed by other agents after sync\n3. Merge conflicts and data inconsistencies\n\n## Root Cause\n\nWhen repos were \"bd doctored\" or initialized at different times, some got issues.jsonl (old default) and others got beads.jsonl (Beads repo specific). These clones push their respective files, creating duplicates.\n\n## Task\n\nScan all repo clones under ~/src/ (1-2 levels deep) and standardize their JSONL configuration.\n\n### Step 1: Find all beads-enabled repos\n\n```bash\n# Find all directories named 'beads' at levels 1-2 under ~/src/\nfind ~/src -maxdepth 2 -type d -name beads\n```\n\n### Step 2: For each repo found, check configuration\n\nFor each directory from Step 1, check:\n- Does `.beads/metadata.json` exist?\n- What is the `jsonl_export` value?\n- What JSONL files actually exist in `.beads/`?\n- Are there multiple JSONL files (problem!)?\n\n### Step 3: Create audit report\n\nGenerate a report showing:\n```\nRepo Path | Config | Actual Files | Status\n----------------------------------- | ------------- | ---------------------- | --------\n~/src/beads | beads.jsonl | beads.jsonl | OK\n~/src/dave/beads | issues.jsonl | issues.jsonl | MISMATCH\n~/src/emma/beads | issues.jsonl | issues.jsonl, beads.jsonl | DUPLICATE!\n```\n\n### Step 4: Determine canonical name for each repo\n\nFor repos that are the SAME git repository (check `git remote -v`):\n- Group them together\n- Determine which JSONL filename should be canonical (majority wins, or beads.jsonl for the beads repo itself)\n- List which clones need to be updated\n\n### Step 5: Generate fix script\n\nCreate a script that for each mismatched clone:\n1. Updates `.beads/metadata.json` to use the canonical name\n2. If JSONL file needs renaming: `git mv .beads/old.jsonl .beads/new.jsonl`\n3. Removes any duplicate JSONL files: `git rm .beads/duplicate.jsonl`\n4. Commits the change\n5. Syncs: `bd sync`\n\n### Expected Output\n\n1. Audit report showing all repos and their config status\n2. List of repos grouped by git remote (same repository)\n3. Fix script or manual instructions for standardizing each repo\n4. Verification that after fixes, all clones of the same repo use the same JSONL filename\n\n### Edge Cases\n\n- Handle repos without metadata.json (use default discovery)\n- Handle repos with no git remote (standalone/local)\n- Handle repos that are not git repositories\n- Don't modify repos with uncommitted changes (warn instead)\n\n### Success Criteria\n\n- All clones of the same git repository use the same JSONL filename\n- No duplicate JSONL files in any repo\n- All configurations documented in metadata.json\n- bd doctor passes on all repos","status":"closed","issue_type":"task","created_at":"2025-11-21T23:58:35.044762-08:00","updated_at":"2025-12-17T23:13:40.531403-08:00","closed_at":"2025-12-17T16:50:59.510972-08:00"} +{"id":"bd-j3il","title":"Add bd reset command for clean slate restart","description":"Implement a command to reset beads to a clean starting state.\n\n**Context:** GitHub issue #479 - users sometimes get beads into an invalid state after updates, and there's no clean way to start fresh. The git backup/restore mechanism that protects against accidental deletion also makes it hard to intentionally reset.\n\n**Current workaround** (from maphew):\n```bash\nbd daemons killall\ngit rm .beads/*.jsonl\ngit commit -m 'remove old issues'\nrm .beads/*\nbd init\nbd onboard\n```\n\n**Desired:** A proper `bd reset` command that handles this cleanly and safely.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-13T08:41:34.956552+11:00","updated_at":"2025-12-13T08:43:49.970591+11:00","closed_at":"2025-12-13T08:43:49.970591+11:00"} +{"id":"bd-j6lr","title":"GH#402: Add --parent flag documentation to bd onboard","description":"bd onboard output is missing --parent flag for epic subtasks. Agents guess wrong syntax (--deps parent:). See GitHub issue #402.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:56.594829-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-jgxi","title":"Auto-migrate database on CLI version bump","description":"When CLI is upgraded (e.g., 0.24.0 ā†’ 0.24.1), database version becomes stale. Add auto-migration in PersistentPreRun or daemon startup. Check dbVersion != CLIVersion and run bd migrate automatically. Fixes recurring UX issue where bd doctor shows version mismatch after every CLI upgrade.","status":"closed","issue_type":"feature","created_at":"2025-11-21T23:16:09.004619-08:00","updated_at":"2025-12-17T23:13:40.535453-08:00","closed_at":"2025-12-17T17:15:43.605762-08:00","dependencies":[{"issue_id":"bd-jgxi","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:09.005513-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-jvu","title":"Add bd update --parent flag to change issue parent","description":"Allow changing an issue's parent with bd update --parent \u003cnew-parent-id\u003e. Useful for reorganizing tasks under different epics or moving issues between hierarchies. Should update the parent-child dependency relationship.","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-17T22:24:07.274485-08:00","updated_at":"2025-12-17T22:34:07.318938-08:00","closed_at":"2025-12-17T22:34:07.318938-08:00"} +{"id":"bd-kpy","title":"Sync race: rebase-based divergence recovery resurrects tombstones","description":"## Problem\nWhen two repos sync simultaneously, tombstones can be resurrected:\n\n1. Repo A deletes issue (creates tombstone), pushes to sync branch\n2. Repo B (with 'closed' status) exports and tries to push\n3. Push fails (non-fast-forward)\n4. fetchAndRebaseInWorktree does git rebase\n5. Git rebase applies B's 'closed' patch on top of A's 'tombstone'\n6. TEXT-level rebase doesn't invoke beads merge driver\n7. 'closed' overwrites 'tombstone' = resurrection\n\n## Root Cause\nCommitToSyncBranch uses git rebase for divergence recovery, but rebase is text-level, not content-level. The proper content-level merge in PullFromSyncBranch handles tombstones correctly, but it runs AFTER the problematic push.\n\n## Proposed Fix\nOption 1: Don't push in CommitToSyncBranch - let PullFromSyncBranch handle merge+push\nOption 2: Replace git rebase with content-level merge in fetchAndRebaseInWorktree\nOption 3: Reorder sync steps: Export ā†’ Pull/Merge ā†’ Commit ā†’ Push\n\n## Workaround Applied\nExcluded tombstones from orphan detection warnings (commit 1e97d9cc).\n\nSee also: bd-3852 (Add orphan detection migration)","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-17T23:29:33.049272-08:00","updated_at":"2025-12-17T23:29:33.049272-08:00"} +{"id":"bd-kqo1","title":"Show pin indicator in bd list output","description":"Add a visual indicator (e.g., pin emoji or [P] marker) for pinned issues in bd list output so users can easily identify them.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-18T23:33:47.402549-08:00","updated_at":"2025-12-18T23:33:47.402549-08:00","dependencies":[{"issue_id":"bd-kqo1","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.771791-08:00","created_by":"daemon"},{"issue_id":"bd-kqo1","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.985271-08:00","created_by":"daemon"}]} +{"id":"bd-kwro","title":"Beads Messaging \u0026 Knowledge Graph (v0.30.2)","description":"Add messaging semantics and extended graph links to Beads, enabling it to serve as\nthe universal substrate for knowledge work - issues, messages, documents, and threads\nas nodes in a queryable graph.\n\n## Motivation\n\nGas Town (GGT) needs inter-agent communication. Rather than a separate mail system,\ncollapse messaging into Beads - one system, one sync, one query interface, all in git.\n\nThis also positions Beads as a foundation for:\n- Company-wide issue tracking (like Notion)\n- Threaded conversations (like Reddit/Slack)\n- Knowledge graphs with loose associations\n- Arbitrary workflow UIs built on top\n\n## New Issue Type\n\n**message** - ephemeral communication between workers\n- sender: who sent it\n- assignee: recipient\n- priority: P0 (urgent) to P4 (routine)\n- status: open (unread) -\u003e closed (read)\n- ephemeral: true = can be bulk-deleted after swarm\n\n## New Graph Links\n\n**replies_to** - conversation threading\n- Messages reply to messages\n- Enables Reddit-style nested threads\n- Different from parent_id (not hierarchy, its conversation flow)\n\n**relates_to** - loose see also associations\n- Bidirectional knowledge graph edges\n- Not blocking, not hierarchical, just related\n- Enables discovery and traversal\n\n**duplicates** - deduplication at scale\n- Mark issue B as duplicate of canonical issue A\n- Close B, link to A\n- Essential for large issue databases\n\n**supersedes** - version chains\n- Design Doc v2 supersedes Design Doc v1\n- Track evolution of artifacts\n\n## New Fields (optional, any issue type)\n\n- sender (string) - who created this (for messages)\n- ephemeral (boolean) - can be bulk-deleted when closed\n\n## New Commands\n\nMessaging:\n- bd mail send \u003crecipient\u003e -s Subject -m Body\n- bd mail inbox (list open messages for me)\n- bd mail read \u003cid\u003e (show message content)\n- bd mail ack \u003cid\u003e (mark as read/close)\n- bd mail reply \u003cid\u003e -m Response (reply to thread)\n\nGraph links:\n- bd relate \u003cid1\u003e \u003cid2\u003e (create relates_to link)\n- bd duplicate \u003cid\u003e --of \u003ccanonical\u003e (mark as duplicate)\n- bd supersede \u003cid\u003e --with \u003cnew\u003e (mark superseded)\n\nCleanup:\n- bd cleanup --ephemeral (delete closed ephemeral issues)\n\n## Identity Configuration\n\nWorkers need identity for sender field:\n- BEADS_IDENTITY env var\n- Or .beads/config.json: identity field\n\n## Hooks (for GGT integration)\n\nBeads as platform - extensible without knowing about GGT.\nHook files in .beads/hooks/:\n- on_create (runs after bd create)\n- on_update (runs after bd update)\n- on_close (runs after bd close)\n- on_message (runs after bd mail send)\n\nGGT registers hooks to notify daemons of new messages.\n\n## Schema Changes (Migration Required)\n\nAdd to issue schema:\n- type: message (new valid type)\n- sender: string (optional)\n- ephemeral: boolean (optional)\n- replies_to: string (issue ID, optional)\n- relates_to: []string (issue IDs, optional)\n- duplicates: string (canonical issue ID, optional)\n- superseded_by: string (new issue ID, optional)\n\nMigration adds fields as optional - existing beads unchanged.\n\n## Success Criteria\n\n1. bd mail send/inbox/read/ack/reply work end-to-end\n2. replies_to creates proper thread structure\n3. relates_to, duplicates, supersedes links queryable\n4. Hooks fire on create/update/close/message\n5. Identity configurable via env or config\n6. Migration preserves all existing data\n7. All new features have tests","status":"tombstone","issue_type":"epic","created_at":"2025-12-16T03:00:53.912223-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"epic"} +{"id":"bd-kwro.1","title":"Schema: Add message type and new fields","description":"Add to internal/storage/sqlite/schema.go and models:\n\nNew issue_type value:\n- message\n\nNew optional fields on Issue struct:\n- Sender string (who sent this)\n- Ephemeral bool (can be bulk-deleted)\n- RepliesTo string (issue ID for threading)\n- RelatesTo []string (issue IDs for knowledge graph)\n- Duplicates string (canonical issue ID)\n- SupersededBy string (replacement issue ID)\n\nUpdate:\n- internal/storage/sqlite/schema.go - add columns\n- internal/models/issue.go - add fields to struct\n- internal/storage/sqlite/sqlite.go - CRUD operations\n- Create migration from v0.30.1\n\nEnsure backward compatibility - all new fields optional.","status":"tombstone","issue_type":"task","created_at":"2025-12-16T03:01:19.777604-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-kwro.10","title":"Tests for messaging and graph links","description":"Comprehensive test coverage for all new features.\n\nTest files:\n- cmd/bd/mail_test.go - mail command tests\n- internal/storage/sqlite/graph_links_test.go - graph link tests\n- internal/hooks/hooks_test.go - hook execution tests\n\nTest cases:\n- Mail send/inbox/read/ack lifecycle\n- Thread creation and traversal (replies_to)\n- Bidirectional relates_to\n- Duplicate marking and queries\n- Supersedes chains\n- Ephemeral cleanup\n- Identity resolution priority\n- Hook execution (mock hooks)\n- Schema migration preserves data\n\nTarget: \u003e80% coverage on new code","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T03:02:34.050136-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-kwro.11","title":"Documentation for messaging and graph links","description":"Document all new features.\n\nFiles to update:\n- README.md - brief mention of messaging capability\n- AGENTS.md - update for AI agents using bd mail\n- docs/messaging.md (new) - full messaging reference\n- docs/graph-links.md (new) - graph link reference\n- CHANGELOG.md - v0.30.2 release notes\n\nTopics to cover:\n- Mail commands with examples\n- Graph link types and use cases\n- Identity configuration\n- Hooks setup for notifications\n- Migration notes","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T03:02:39.548518-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-kwro.2","title":"Graph Link: replies_to for conversation threading","description":"Implement replies_to link type for message threading.\n\nNew command:\n- bd mail reply \u003cid\u003e -m 'Response' creates a message with replies_to set\n\nQuery support:\n- bd show \u003cid\u003e --thread shows full conversation thread\n- Thread traversal in storage layer\n\nStorage:\n- replies_to column in issues table\n- Index for efficient thread queries\n\nThis enables Reddit-style nested threads where messages reply to other messages.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:25.292728-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-kwro.3","title":"Graph Link: relates_to for knowledge graph","description":"Implement relates_to link type for loose associations.\n\nNew command:\n- bd relate \u003cid1\u003e \u003cid2\u003e - creates bidirectional relates_to link\n\nQuery support:\n- bd show \u003cid\u003e --related shows related issues\n- bd list --related-to \u003cid\u003e\n\nStorage:\n- relates_to stored as JSON array of issue IDs\n- Consider: separate junction table for efficiency at scale?\n\nThis enables 'see also' connections without blocking or hierarchy.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:30.793115-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-kwro.4","title":"Graph Link: duplicates for deduplication","description":"Implement duplicates link type for marking issues as duplicates.\n\nNew command:\n- bd duplicate \u003cid\u003e --of \u003ccanonical\u003e - marks id as duplicate of canonical\n- Auto-closes the duplicate issue\n\nQuery support:\n- bd show \u003cid\u003e shows 'Duplicate of: \u003ccanonical\u003e'\n- bd list --duplicates shows all duplicate pairs\n\nStorage:\n- duplicates column pointing to canonical issue ID\n\nEssential for large issue databases with many similar reports.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:36.257223-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-kwro.5","title":"Graph Link: supersedes for version chains","description":"Implement supersedes link type for version tracking.\n\nNew command:\n- bd supersede \u003cid\u003e --with \u003cnew\u003e - marks id as superseded by new\n- Auto-closes the superseded issue\n\nQuery support:\n- bd show \u003cid\u003e shows 'Superseded by: \u003cnew\u003e'\n- bd show \u003cnew\u003e shows 'Supersedes: \u003cid\u003e'\n- bd list --superseded shows version chains\n\nStorage:\n- superseded_by column pointing to replacement issue\n\nUseful for design docs, specs, and evolving artifacts.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:01:41.749294-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-kwro.6","title":"Mail Commands: bd mail send/inbox/read/ack","description":"Implement core mail commands in cmd/bd/mail.go\n\nCommands:\n- bd mail send \u003crecipient\u003e -s 'Subject' -m 'Body' [--urgent]\n - Creates issue with type=message, sender=identity, assignee=recipient\n - --urgent sets priority=0\n \n- bd mail inbox [--from \u003csender\u003e] [--priority \u003cn\u003e]\n - Lists open messages where assignee=my identity\n - Sorted by priority, then date\n \n- bd mail read \u003cid\u003e\n - Shows full message content (subject, body, sender, timestamp)\n - Does NOT close (separate from ack)\n \n- bd mail ack \u003cid\u003e\n - Marks message as read by closing it\n - Can ack multiple: bd mail ack \u003cid1\u003e \u003cid2\u003e ...\n\nRequires: Identity configuration (bd-kwro.7)","status":"tombstone","issue_type":"task","created_at":"2025-12-16T03:02:12.103755-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-kwro.7","title":"Identity Configuration","description":"Implement identity system for sender field.\n\nConfiguration sources (in priority order):\n1. --identity flag on commands\n2. BEADS_IDENTITY environment variable\n3. .beads/config.json: {\"identity\": \"worker-name\"}\n4. Default: git user.name or hostname\n\nNew config file support:\n- .beads/config.json for per-repo settings\n- identity field for messaging\n\nHelper function:\n- GetIdentity() string - resolves identity from sources\n\nUpdate bd mail send to use GetIdentity() for sender field.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:02:17.603608-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-kwro.8","title":"Hooks System","description":"Implement hook system for extensibility.\n\nHook directory: .beads/hooks/\nHook files (executable scripts):\n- on_create - runs after bd create\n- on_update - runs after bd update \n- on_close - runs after bd close\n- on_message - runs after bd mail send\n\nHook invocation:\n- Pass issue ID as first argument\n- Pass event type as second argument\n- Pass JSON issue data on stdin\n- Run asynchronously (dont block command)\n\nExample hook (GGT notification):\n #!/bin/bash\n gt notify --event=$2 --issue=$1\n\nThis allows GGT to register notification handlers without Beads knowing about GGT.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T03:02:23.086393-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-kwro.9","title":"Cleanup: --ephemeral flag","description":"Update bd cleanup to handle ephemeral issues.\n\nNew flag:\n- bd cleanup --ephemeral - deletes all CLOSED issues with ephemeral=true\n\nBehavior:\n- Only deletes if status=closed AND ephemeral=true\n- Respects --dry-run flag\n- Reports count of deleted ephemeral issues\n\nThis allows swarm cleanup to remove transient messages without affecting permanent issues.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T03:02:28.563871-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-kyo","title":"Run tests and linting","description":"Run the full test suite and linter:\n\n```bash\nTMPDIR=/tmp go test -short ./...\ngolangci-lint run ./...\n```\n\nFix any failures. Linting warnings acceptable (see LINTING.md).","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:59.290588-08:00","updated_at":"2025-12-18T22:44:36.570262-08:00","closed_at":"2025-12-18T22:44:36.570262-08:00","dependencies":[{"issue_id":"bd-kyo","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.370234-08:00","created_by":"daemon"},{"issue_id":"bd-kyo","depends_on_id":"bd-8hy","type":"blocks","created_at":"2025-12-18T22:43:20.570742-08:00","created_by":"daemon"}]} +{"id":"bd-lfak","title":"bd preflight: PR readiness checks for contributors","description":"## Vision\n\nEncode project-specific institutional knowledge into executable checks. CONTRIBUTING.md is documentation that's read once and forgotten; `bd preflight` is documentation that runs at exactly the right moment.\n\n## Problem Statement\n\nContributors face a \"last mile\" problem - they do the work but stumble on project-specific gotchas at PR time:\n- Nix vendorHash gets stale when go.sum changes\n- Beads artifacts leak into PRs (see bd-umbf for namespace solution)\n- Version mismatches between version.go and default.nix\n- Tests/lint not run locally before pushing\n- Other project-specific checks that only surface when CI fails\n\nThese are too obscure to remember, exist in docs nobody reads end-to-end, and waste CI round-trips.\n\n## Why beads?\n\nBeads already has a foothold in the contributor workflow. It knows:\n- Git state (staged files, branch, dirty status)\n- Project structure\n- The specific issue being worked on\n- Project-specific configuration\n\n## Proposed Interface\n\n### Tier 1: Checklist Mode (v1)\n\n $ bd preflight\n PR Readiness Checklist:\n\n [ ] Tests pass: go test -short ./...\n [ ] Lint passes: golangci-lint run ./...\n [ ] No beads pollution: check .beads/issues.jsonl diff\n [ ] Nix hash current: go.sum unchanged or vendorHash updated\n [ ] Version sync: version.go matches default.nix\n\n Run 'bd preflight --check' to validate automatically.\n\n### Tier 2: Check Mode (v2)\n\n $ bd preflight --check\n āœ“ Tests pass\n āœ“ Lint passes\n āš  Beads pollution: 3 issues in diff - are these project issues or personal?\n āœ— Nix hash stale: go.sum changed, vendorHash needs update\n Fix: sha256-KRR6dXzsSw8OmEHGBEVDBOoIgfoZ2p0541T9ayjGHlI=\n āœ“ Version sync\n\n 1 error, 1 warning. Run 'bd preflight --fix' to auto-fix where possible.\n\n### Tier 3: Fix Mode (v3)\n\n $ bd preflight --fix\n āœ“ Updated vendorHash in default.nix\n āš  Cannot auto-fix beads pollution - manual review needed\n\n## Checks to Implement\n\n| Check | Description | Auto-fixable |\n|-------|-------------|--------------|\n| tests | Run go test -short ./... | No |\n| lint | Run golangci-lint | Partial (gofmt) |\n| beads-pollution | Detect personal issues in diff | No (see bd-umbf) |\n| nix-hash | Detect stale vendorHash | Yes (if nix available) |\n| version-sync | version.go matches default.nix | Yes |\n| no-debug | No TODO/FIXME/console.log | Warn only |\n| clean-stage | No unintended files staged | Warn only |\n\n## Future: Configuration\n\nMake checks configurable per-project via .beads/preflight.yaml:\n\n preflight:\n checks:\n - name: tests\n run: go test -short ./...\n required: true\n - name: no-secrets\n pattern: \"**/*.env\"\n staged: deny\n - name: custom-check\n run: ./scripts/validate.sh\n\nThis lets any project using beads define their own preflight checks.\n\n## Implementation Phases\n\n### Phase 1: Static Checklist\n- Implement bd preflight with hardcoded checklist for beads\n- No execution, just prints what to check\n- Update CONTRIBUTING.md to reference it\n\n### Phase 2: Automated Checks\n- Implement bd preflight --check\n- Run tests, lint, detect stale hashes\n- Clear pass/fail/warn output\n\n### Phase 3: Auto-fix\n- Implement bd preflight --fix\n- Fix vendorHash, version sync\n- Integrate with bd-umbf solution for pollution\n\n### Phase 4: Configuration\n- .beads/preflight.yaml support\n- Make it useful for other projects using beads\n- Plugin/hook system for custom checks\n\n## Dependencies\n\n- bd-umbf: Namespace isolation for beads pollution (blocking for full solution)\n\n## Success Metrics\n\n- Fewer CI failures on first PR push\n- Reduced \"fix nix hash\" commits\n- Contributors report preflight caught issues before CI","status":"open","priority":2,"issue_type":"epic","created_at":"2025-12-13T18:01:39.587078-08:00","updated_at":"2025-12-13T18:01:39.587078-08:00","dependencies":[{"issue_id":"bd-lfak","depends_on_id":"bd-umbf","type":"blocks","created_at":"2025-12-13T18:01:46.059901-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-llfl","title":"Improve test coverage for cmd/bd CLI (26.2% ā†’ 50%)","description":"The main CLI package (cmd/bd) has only 26.2% test coverage. CLI commands should have at least 50% coverage to ensure reliability.\n\nKey areas with low/no coverage:\n- daemon_autostart.go (multiple 0% functions)\n- compact.go (several 0% functions)\n- Various command handlers\n\nCurrent coverage: 26.2%\nTarget coverage: 50%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:03.123341-08:00","updated_at":"2025-12-13T21:01:18.901944-08:00"} +{"id":"bd-lo4","title":"Test pinned issue","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-18T21:44:49.031385-08:00","updated_at":"2025-12-18T21:47:25.055109-08:00","deleted_at":"2025-12-18T21:47:25.055109-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} +{"id":"bd-lsv4","title":"GH#444: Fix inconsistent status naming in_progress vs in-progress","description":"Documentation uses in-progress (hyphen) but code expects in_progress (underscore). Update all docs to use canonical in_progress. See GitHub issue #444.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:14.349425-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-lw0x","title":"Fix bd sync race condition with daemon causing dirty working directory","description":"After bd sync completes with sync.branch mode, subsequent bd commands or daemon file watcher would see a hash mismatch and trigger auto-import, which then schedules re-export, dirtying the working directory.\n\n**Root cause:**\n1. bd sync exports JSONL with NEW content (hash H1)\n2. bd sync updates jsonl_content_hash = H1 in DB\n3. bd sync restores JSONL from HEAD (OLD content, hash H0)\n4. Now: file hash = H0, DB hash = H1 (MISMATCH)\n5. Daemon or next CLI command sees mismatch, imports from OLD JSONL\n6. Import triggers re-export ā†’ file is dirty\n\n**Fix:**\nAfter restoreBeadsDirFromBranch(), update jsonl_content_hash to match the restored file's hash. This ensures daemon and CLI see file hash = DB hash ā†’ no spurious import/export cycle.\n\nRelated: bd-c83r (multiple daemon prevention)","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-13T06:42:17.130839-08:00","updated_at":"2025-12-13T06:43:33.329042-08:00","closed_at":"2025-12-13T06:43:33.329042-08:00"} +{"id":"bd-lxzx","title":"Add close_reason to JSONL export format documentation","description":"PR #551 now persists close_reason to the database, but there's a question about whether this field should be exported to JSONL format.\n\n## Current State\n- close_reason is stored in issues.close_reason column\n- close_reason is also stored in events table (audit trail)\n- The JSONL export format may or may not include close_reason\n\n## Questions\n1. Should close_reason be exported to JSONL format?\n2. If yes, where should it go (root level or nested in events)?\n3. Should there be any special handling to avoid duplication?\n4. How should close_reason be handled during JSONL import?\n\n## Why This Matters\n- JSONL is the git-friendly sync format\n- Other beads instances import from JSONL\n- close_reason is meaningful data that should be preserved across clones\n\n## Suggested Action\n- Check if close_reason is currently exported in JSONL\n- If not, add it to the export schema\n- Document the field in JSONL format spec\n- Add tests for round-trip (export -\u003e import -\u003e verify close_reason)","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:17.414916-08:00","updated_at":"2025-12-14T14:25:17.414916-08:00","dependencies":[{"issue_id":"bd-lxzx","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:17.416131-08:00","created_by":"stevey","metadata":"{}"}]} +{"id":"bd-m8ro","title":"Improve test coverage for internal/rpc (47.5% ā†’ 60%)","description":"The RPC package has only 47.5% test coverage. RPC is the communication layer for daemon operations.\n\nCurrent coverage: 47.5%\nTarget coverage: 60%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:09.515299-08:00","updated_at":"2025-12-13T21:01:17.17404-08:00"} +{"id":"bd-mql4","title":"getLocalSyncBranch silently ignores YAML parse errors","description":"In autoimport.go:170-172, YAML parsing errors are silently ignored. If a user has malformed YAML in config.yaml, sync-branch will just silently be empty with no feedback.\n\nRecommendation: Add debug logging since this function is only called during auto-import, and debugging silent failures is painful.\n\nAdd: debug.Logf(\"Warning: failed to parse config.yaml: %v\", err)","status":"open","priority":4,"issue_type":"task","created_at":"2025-12-07T02:03:44.217728-08:00","updated_at":"2025-12-07T02:03:44.217728-08:00"} +{"id":"bd-muw","title":"Add empty tasks validation in workflow create","description":"workflow.go:321 will panic if wf.Tasks is empty. Add validation that len(wf.Tasks) \u003e 0 before accessing wf.Tasks[0].","status":"closed","priority":3,"issue_type":"bug","created_at":"2025-12-17T22:23:00.75707-08:00","updated_at":"2025-12-17T22:34:07.281133-08:00","closed_at":"2025-12-17T22:34:07.281133-08:00"} +{"id":"bd-n386","title":"Improve test coverage for internal/daemon (27.3% ā†’ 60%)","description":"The daemon package has only 27.3% test coverage. The daemon is critical for background operations and reliability.\n\nKey areas needing tests:\n- Daemon autostart logic\n- Socket handling\n- PID file management\n- Health checks\n\nCurrent coverage: 27.3%\nTarget coverage: 60%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:00.895238-08:00","updated_at":"2025-12-13T21:01:17.274438-08:00"} +{"id":"bd-n3v","title":"Error committing to sync branch: failed to create worktree","description":"\u003e bd sync --no-daemon\nā†’ Exporting pending changes to JSONL...\nā†’ Committing changes to sync branch 'beads-sync'...\nError committing to sync branch: failed to create worktree: failed to create worktree parent directory: mkdir /var/home/matt/dev/beads/fix-ci/.git: not a directory","notes":"**Problem Diagnosed**: The `bd sync` command was failing with \"mkdir /var/home/matt/dev/beads/fix-ci/.git: not a directory\" because it was being executed from the wrong directory.\n\n**Root Cause**: The command was run from `/var/home/matt/dev/beads` (where the `fix-ci` worktree exists) instead of the main repository directory `/var/home/matt/dev/beads/main`. Since `fix-ci` is a git worktree with a `.git` file (not directory), the worktree creation logic failed when trying to create `\u003ccurrent_dir\u003e/.git/beads-worktrees/\u003cbranch\u003e`.\n\n**Solution Verified**: Execute `bd sync` from the main repository directory:\n```bash\ncd main \u0026\u0026 bd sync --dry-run\n```\n","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-05T15:25:24.514998248-07:00","updated_at":"2025-12-05T15:42:32.910166956-07:00"} +{"id":"bd-n4td","title":"Add warning when staleness check errors","description":"## Problem\n\nWhen ensureDatabaseFresh() calls CheckStaleness() and it errors (corrupted metadata, permission issues, etc.), we silently proceed with potentially stale data.\n\n**Location:** cmd/bd/staleness.go:27-32\n\n**Scenarios:**\n- Corrupted metadata table\n- Database locked by another process \n- Permission issues reading JSONL file\n- Invalid last_import_time format in DB\n\n## Current Code\n\n```go\nisStale, err := autoimport.CheckStaleness(ctx, store, dbPath)\nif err \\!= nil {\n // If we can't determine staleness, allow operation to proceed\n // (better to show potentially stale data than block user)\n return nil\n}\n```\n\n## Fix\n\n```go\nisStale, err := autoimport.CheckStaleness(ctx, store, dbPath)\nif err \\!= nil {\n fmt.Fprintf(os.Stderr, \"Warning: Could not verify database freshness: %v\\n\", err)\n fmt.Fprintf(os.Stderr, \"Proceeding anyway. Data may be stale.\\n\\n\")\n return nil\n}\n```\n\n## Impact\nMedium - users should know when staleness check fails\n\n## Effort\nEasy - 5 minutes","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-11-20T20:16:34.889997-05:00","updated_at":"2025-12-17T23:13:40.531031-08:00","closed_at":"2025-12-17T19:11:12.950618-08:00","dependencies":[{"issue_id":"bd-n4td","depends_on_id":"bd-2q6d","type":"blocks","created_at":"2025-11-20T20:18:20.154723-05:00","created_by":"stevey","metadata":"{}"}]} +{"id":"bd-n777","title":"Timer beads for scheduled agent callbacks","description":"## Problem\n\nAgents frequently need to wait for external events (CI completion, PR reviews, artifact builds) but have no good mechanism:\n- `sleep N` blocks and is unreliable (often times out at 8+ minutes)\n- Polling wastes context and is easy to forget\n- No way to survive session restarts\n\n## Proposal: Timer Beads\n\nA new bead type or field that represents a scheduled callback:\n\n### Creating timers\n```bash\nbd timer create --in 30s --callback \"Check CI run 12345\" --issue bd-xyz\nbd timer create --at \"2025-12-20T08:00:00\" --callback \"Morning standup\"\nbd timer create --in 5m --on-expire \"tmux send-keys -t dave 'bd show bd-xyz'\"\n```\n\n### Timer storage\n- Store in beads (survives restarts)\n- Fields: `expires_at`, `callback_description`, `on_expire_command`, `linked_issue`\n- Status: pending, fired, cancelled\n\n### Deacon integration\nThe Deacon daemon monitors timer beads:\n1. Wakes on next timer expiry\n2. Executes `on_expire` command (e.g., tmux send-keys to interrupt agent)\n3. Marks timer as fired\n4. Optionally updates linked issue\n\n### Use cases\n- CI monitoring: \"ping me when build completes\"\n- PR reviews: \"check back in 1 hour\"\n- Scheduled tasks: \"remind me at EOD to sync\"\n- Blocking waits: agent registers callback instead of sleeping\n\n## Acceptance criteria\n- [ ] Timer bead type or field design\n- [ ] `bd timer create/list/cancel` commands\n- [ ] Deacon timer monitoring loop\n- [ ] tmux integration for agent interrupts\n- [ ] Survives daemon restarts","status":"open","priority":2,"issue_type":"feature","created_at":"2025-12-19T23:05:33.051861-08:00","updated_at":"2025-12-19T23:05:33.051861-08:00"} +{"id":"bd-ncwo","title":"Ghost resurrection: remote status:closed wins during git merge","description":"During bd sync, the 3-way git merge sometimes keeps remote's status:closed instead of local's status:tombstone. This causes ghost issues to resurrect even when tombstones exist.\n\nRoot cause: Git 3-way merge doesn't understand tombstone semantics. If base had closed, local changed to tombstone, and remote has closed, git might keep remote's version.\n\nThe early tombstone check in importer.go only prevents CREATION when tombstones exist in DB. But if applyDeletionsFromMerge hard-deletes the tombstones before import runs (because they're not in the merged result), the check doesn't help.\n\nPotential fixes:\n1. Make tombstones 'win' in the beads merge driver (internal/merge/merge.go)\n2. Don't hard-delete tombstones in applyDeletionsFromMerge if they're in the DB\n3. Export tombstones to a separate file that's not subject to merge\n\nGhost issues: bd-cb64c226.*, bd-cbed9619.*","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T22:01:03.56423-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-ndye","title":"mergeDependencies uses union instead of 3-way merge","description":"## Critical Bug\n\nThe `mergeDependencies` function in internal/merge/merge.go performs a UNION of left and right dependencies instead of a proper 3-way merge. This causes removed dependencies to be resurrected.\n\n### Root Cause\n\n```go\n// Current code (lines 795-816):\nfunc mergeDependencies(left, right []Dependency) []Dependency {\n // Just unions left + right\n // NEVER REMOVES anything\n // Doesn't even look at base!\n}\n```\n\nAnd `mergeIssue` (line 579) doesn't pass `base`:\n```go\nresult.Dependencies = mergeDependencies(left.Dependencies, right.Dependencies)\n```\n\n### Impact\n\nIf:\n- Base has dependency D\n- Left removes D (intentional)\n- Right still has D (stale)\n\nCurrent: D is in result (resurrection!)\nCorrect: Left removed it, D should NOT be in result\n\nThis breaks Gas Town's workflow and data integrity. Closed means closed.\n\n### Fix\n\nChange `mergeDependencies` to take `base` and do proper 3-way merge:\n- If dep was in base and removed by left ā†’ exclude (left wins)\n- If dep was in base and removed by right ā†’ exclude (right wins)\n- If dep wasn't in base and added by either ā†’ include\n- If dep was in base and both still have it ā†’ include\n\nKey principle: **REMOVALS ARE AUTHORITATIVE**\n\n### Files to Change\n\n1. internal/merge/merge.go:\n - `mergeDependencies(left, right)` ā†’ `mergeDependencies(base, left, right)`\n - `mergeIssue` line 579: pass `base.Dependencies`\n\n### Related\n\nThis also explains why `ProtectLocalExportIDs` in importer is defined but never used - the protection was never actually implemented.","status":"closed","issue_type":"bug","created_at":"2025-12-18T23:15:54.475872-08:00","updated_at":"2025-12-18T23:21:10.709571-08:00","closed_at":"2025-12-18T23:21:10.709571-08:00"} +{"id":"bd-nl2","title":"No logging/debugging for tombstone resurrection events","description":"Per the design document bd-zvg Open Question 1: Should resurrection log a warning? Recommendation was Yes. Currently, when an expired tombstone loses to a live issue (resurrection), there is no logging or debugging output. This makes it hard to understand why an issue reappeared. Recommendation: Add optional debug logging when resurrection occurs, e.g., Issue bd-abc resurrected (tombstone expired). Files: internal/merge/merge.go:359-366, 371-378, 400-405, 410-415","status":"open","priority":4,"issue_type":"feature","created_at":"2025-12-05T16:36:52.27525-08:00","updated_at":"2025-12-05T16:36:52.27525-08:00"} +{"id":"bd-nuh1","title":"GH#403: bd doctor --fix circular error message","description":"bd doctor --fix suggests running bd doctor --fix for deletions manifest issue. Fix to provide actual resolution. See GitHub issue #403.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:16.290018-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-o4qy","title":"Improve CheckStaleness error handling","description":"## Problem\n\nCheckStaleness returns 'false' (not stale) for multiple error conditions instead of returning errors. This masks problems.\n\n**Location:** internal/autoimport/autoimport.go:253-285\n\n## Edge Cases That Return False\n\n1. **Invalid last_import_time format** (line 259-262)\n2. **No JSONL file found** (line 267-277) \n3. **JSONL stat fails** (line 279-282)\n\n## Fix\n\nReturn errors for abnormal conditions:\n\n```go\nlastImportTime, err := time.Parse(time.RFC3339, lastImportStr)\nif err != nil {\n return false, fmt.Errorf(\"corrupted last_import_time: %w\", err)\n}\n\nif jsonlPath == \"\" {\n return false, fmt.Errorf(\"no JSONL file found\")\n}\n\nstat, err := os.Stat(jsonlPath)\nif err != nil {\n return false, fmt.Errorf(\"cannot stat JSONL: %w\", err)\n}\n```\n\n## Impact\nMedium - edge cases are rare but should be handled\n\n## Effort \n30 minutes - requires updating callers in RPC server","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-11-20T20:17:27.606219-05:00","updated_at":"2025-12-17T23:13:40.536905-08:00","closed_at":"2025-12-17T19:11:12.965289-08:00","dependencies":[{"issue_id":"bd-o4qy","depends_on_id":"bd-2q6d","type":"blocks","created_at":"2025-11-20T20:18:26.81065-05:00","created_by":"stevey","metadata":"{}"}]} +{"id":"bd-o55a","title":"GH#509: bd doesn't find .beads when running from nested worktrees","description":"When worktrees are nested under main repo (.worktrees/feature/), bd stops at worktree git root instead of continuing to find .beads in parent. See GitHub issue #509 for detailed fix suggestion.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:20.281591-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-o9o","title":"Exclude pinned issues from bd ready","description":"Update bd ready to exclude pinned issues. Pinned issues are context markers, not work items, and should never appear in the ready-to-work list.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:41.979073-08:00","updated_at":"2025-12-18T23:33:41.979073-08:00","dependencies":[{"issue_id":"bd-o9o","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.392931-08:00","created_by":"daemon"},{"issue_id":"bd-o9o","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.612655-08:00","created_by":"daemon"}]} +{"id":"bd-ola6","title":"Implement transaction retry logic for SQLITE_BUSY","description":"BEGIN IMMEDIATE fails immediately on SQLITE_BUSY instead of retrying with exponential backoff.\n\nLocation: internal/storage/sqlite/sqlite.go:223-225\n\nProblem:\n- Under concurrent write load, BEGIN IMMEDIATE can fail with SQLITE_BUSY\n- Current implementation fails immediately instead of retrying\n- Results in spurious failures under normal concurrent usage\n\nSolution: Implement exponential backoff retry:\n- Retry up to N times (e.g., 5)\n- Backoff: 10ms, 20ms, 40ms, 80ms, 160ms\n- Check for context cancellation between retries\n- Only retry on SQLITE_BUSY/database locked errors\n\nImpact: Spurious failures under concurrent write load\n\nEffort: 3 hours","status":"open","priority":1,"issue_type":"feature","created_at":"2025-11-16T14:51:31.247147-08:00","updated_at":"2025-11-16T14:51:31.247147-08:00"} +{"id":"bd-ork0","title":"Add comments to 30+ silently ignored errors or fix them","description":"Code health review found 30+ instances of error suppression using blank identifier without explanation:\n\nGood examples (with comments):\n- merge.go: _ = gitRmCmd.Run() // Ignore errors\n- daemon_watcher.go: _ = watcher.Add(...) // Ignore error\n\nBad examples (no context):\n- create.go:213: dbPrefix, _ = store.GetConfig(ctx, \"issue_prefix\")\n- daemon_sync_branch.go: _ = daemonClient.Close()\n- migrate_hash_ids.go, version_tracking.go: _ = store.Close()\n\nFix: Add comments explaining WHY errors are ignored, or handle them properly.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:25.899372-08:00","updated_at":"2025-12-16T18:17:25.899372-08:00","dependencies":[{"issue_id":"bd-ork0","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.275843-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-ot0w","title":"Work on beads-tip: Fix broken Claude integration link in ...","description":"Work on beads-tip: Fix broken Claude integration link in bd doctor (GH#623). Update URL that doesn't exist. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","assignee":"beads/dementus","created_at":"2025-12-19T22:56:08.429157-08:00","updated_at":"2025-12-19T23:20:39.790305-08:00","closed_at":"2025-12-19T23:20:39.790305-08:00","close_reason":"Fixed broken Claude plugin URL in bd doctor"} +{"id":"bd-otf4","title":"Code Review: PR #481 - Context Engineering Optimizations","description":"Comprehensive code review of the merged context engineering PR (PR #481) that reduces MCP context usage by 80-90%.\n\n## Summary\nThe PR successfully implements lazy tool schema loading and minimal issue models to reduce context window usage. Overall implementation is solid and well-tested.\n\n## Positive Findings\nāœ… Well-designed models (IssueMinimal, CompactedResult)\nāœ… Comprehensive test coverage (28 tests, all passing)\nāœ… Clear documentation and comments\nāœ… Backward compatibility preserved (show() still returns full Issue)\nāœ… Sensible defaults (COMPACTION_THRESHOLD=20, PREVIEW_COUNT=5)\nāœ… Tool catalog complete with all 15 tools documented\n\n## Issues Identified\nSee linked issues for specific followup tasks.\n\n## Context Engineering Architecture\n- discover_tools(): List tool names only (~500 bytes vs ~15KB)\n- get_tool_info(name): Get specific tool details on-demand\n- IssueMinimal: Lightweight model for list views (~80 bytes vs ~400 bytes)\n- CompactedResult: Auto-compacts results with \u003e20 issues\n- _to_minimal(): Conversion function (efficient, no N+1 issues)","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:24:13.523532-08:00","updated_at":"2025-12-14T14:24:13.523532-08:00"} +{"id":"bd-otli","title":"Wait for CI to pass","description":"Monitor GitHub Actions - all checks must pass before release artifacts are built","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:03.022281-08:00","updated_at":"2025-12-20T00:49:51.928591-08:00","closed_at":"2025-12-20T00:25:52.635223-08:00","dependencies":[{"issue_id":"bd-otli","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.097564-08:00","created_by":"daemon"},{"issue_id":"bd-otli","depends_on_id":"bd-7tuu","type":"blocks","created_at":"2025-12-19T22:56:23.360436-08:00","created_by":"daemon"}]} +{"id":"bd-p5za","title":"mol-christmas-launch: 3-day execution plan","description":"Christmas Launch Molecule - execute phases in order, survive restarts.\n\nPIN THIS BEAD. Check progress each session start.\n\n## Step: phase0-beads-foundation\nFix blocking issues before swarming:\n1. Verify gastown beads schema works: bd list --status=open\n2. Ensure bd mol bond exists (check bd-usro)\n3. Verify bd-2vh3 (squash) is filed\n\n## Step: phase1-polecat-loop\nSerial work on polecat execution:\n1. gt-9nf: Fresh polecats only\n2. gt-975: Molecule execution support\n3. gt-8v8: Refuse uncommitted work\nThen swarm: gt-e1y, gt-f8v, gt-eu9\nNeeds: phase0-beads-foundation\n\n## Step: phase2-refinery\nSerial work on refinery autonomy:\n1. gt-5gkd: Refinery CLAUDE.md\n2. gt-bj6f: Refinery context in gt prime\n3. gt-0qki: Refinery-Witness protocol\nNeeds: phase1-polecat-loop\n\n## Step: phase3-deacon\nHealth monitoring infrastructure:\n1. gt-5af.4: Simplify daemon\n2. gt-5af.7: Crew session patterns\n3. gt-976: Crew lifecycle\nNeeds: phase2-refinery\n\n## Step: phase4-code-review\nSelf-improvement flywheel:\n1. Define mol-code-review (gt-fjvo)\n2. Test on open MRs\n3. Integrate with Refinery\nNeeds: phase3-deacon\n\n## Step: phase5-polish\nDemo readiness:\n1. gt-b2hj: Find orphaned work\n2. Doctor checks\n3. Clean up open MRs\nNeeds: phase4-code-review\n\n## Step: verify-flywheel\nSuccess criteria:\n- gt spawn works with molecules\n- Refinery processes MRs autonomously\n- mol-code-review runs on a PR\n- bd cleanup --ephemeral works\nNeeds: phase5-polish","status":"open","issue_type":"epic","created_at":"2025-12-20T21:20:02.462889-08:00","updated_at":"2025-12-20T21:20:02.462889-08:00"} +{"id":"bd-pbh","title":"Release v0.30.4","description":"## Version Bump Workflow\n\nCoordinating release from 0.30.3 to 0.30.4.\n\n### Components Updated\n- Go CLI (cmd/bd/version.go)\n- Claude Plugin (.claude-plugin/*.json)\n- MCP Server (integrations/beads-mcp/)\n- npm Package (npm-package/package.json)\n- Git hooks (cmd/bd/templates/hooks/)\n\n### Release Channels\n- GitHub Releases (GoReleaser)\n- PyPI (beads-mcp)\n- npm (@beads/cli)\n- Homebrew (homebrew-beads tap)\n","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-17T21:19:10.926133-08:00","updated_at":"2025-12-17T21:46:46.192948-08:00","closed_at":"2025-12-17T21:46:46.192948-08:00","labels":["release","v0.30.4","workflow"]} +{"id":"bd-pbh.1","title":"Update cmd/bd/version.go to 0.30.4","description":"Update the Version constant in cmd/bd/version.go:\n```go\nVersion = \"0.30.4\"\n```\n\n\n```verify\ngrep -q 'Version = \"0.30.4\"' cmd/bd/version.go\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.9462-08:00","updated_at":"2025-12-17T21:46:46.20387-08:00","closed_at":"2025-12-17T21:46:46.20387-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.1","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.946633-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.10","title":"Run check-versions.sh - all must pass","description":"Run the version consistency check:\n```bash\n./scripts/check-versions.sh\n```\n\nAll versions must match 0.30.4.\n\n\n```verify\n./scripts/check-versions.sh\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.047311-08:00","updated_at":"2025-12-17T21:46:46.28316-08:00","closed_at":"2025-12-17T21:46:46.28316-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.047888-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.1","type":"blocks","created_at":"2025-12-17T21:19:11.159084-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.4","type":"blocks","created_at":"2025-12-17T21:19:11.168248-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.5","type":"blocks","created_at":"2025-12-17T21:19:11.177869-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.6","type":"blocks","created_at":"2025-12-17T21:19:11.187629-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.7","type":"blocks","created_at":"2025-12-17T21:19:11.199955-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.8","type":"blocks","created_at":"2025-12-17T21:19:11.211479-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.10","depends_on_id":"bd-pbh.9","type":"blocks","created_at":"2025-12-17T21:19:11.224059-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.11","title":"Commit changes and create v0.30.4 tag","description":"```bash\ngit add -A\ngit commit -m \"chore: Bump version to 0.30.4\"\ngit tag -a v0.30.4 -m \"Release v0.30.4\"\n```\n\n\n```verify\ngit describe --tags --exact-match HEAD 2\u003e/dev/null | grep -q 'v0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.056575-08:00","updated_at":"2025-12-17T21:46:46.292166-08:00","closed_at":"2025-12-17T21:46:46.292166-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.056934-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh.10","type":"blocks","created_at":"2025-12-17T21:19:11.234175-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh.2","type":"blocks","created_at":"2025-12-17T21:19:11.245316-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.11","depends_on_id":"bd-pbh.3","type":"blocks","created_at":"2025-12-17T21:19:11.255362-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.12","title":"Push commit and tag to origin","description":"```bash\ngit push origin main\ngit push origin v0.30.4\n```\n\nThis triggers GitHub Actions:\n- GoReleaser build\n- PyPI publish\n- npm publish\n\n\n```verify\ngit ls-remote origin refs/tags/v0.30.4 | grep -q 'v0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.066074-08:00","updated_at":"2025-12-17T21:46:46.301948-08:00","closed_at":"2025-12-17T21:46:46.301948-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.12","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.066442-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.12","depends_on_id":"bd-pbh.11","type":"blocks","created_at":"2025-12-17T21:19:11.265986-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.13","title":"Monitor GoReleaser CI job","description":"Watch the GoReleaser action:\nhttps://github.com/steveyegge/beads/actions/workflows/release.yml\n\nShould complete in ~10 minutes and create:\n- GitHub Release with binaries for all platforms\n- Checksums and signatures\n\nCheck status:\n```bash\ngh run list --workflow=release.yml -L 1\ngh run watch # to monitor live\n```\n\nVerify release exists:\n```bash\ngh release view v0.30.4\n```\n\n\n```verify\ngh release view v0.30.4 --json tagName -q .tagName | grep -q 'v0.30.4'\n```","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.074476-08:00","updated_at":"2025-12-17T21:46:46.311506-08:00","closed_at":"2025-12-17T21:46:46.311506-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.13","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.074833-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.13","depends_on_id":"bd-pbh.12","type":"blocks","created_at":"2025-12-17T21:19:11.279092-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.14","title":"Monitor PyPI publish","description":"Watch the PyPI publish action:\nhttps://github.com/steveyegge/beads/actions/workflows/pypi-publish.yml\n\nVerify at: https://pypi.org/project/beads-mcp/0.30.4/\n\nCheck:\n```bash\npip index versions beads-mcp 2\u003e/dev/null | grep -q '0.30.4'\n```\n\n\n```verify\npip index versions beads-mcp 2\u003e/dev/null | grep -q '0.30.4' || curl -s https://pypi.org/pypi/beads-mcp/json | jq -e '.releases[\"0.30.4\"]'\n```","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.083809-08:00","updated_at":"2025-12-17T21:46:46.320922-08:00","closed_at":"2025-12-17T21:46:46.320922-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.14","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.084126-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.14","depends_on_id":"bd-pbh.12","type":"blocks","created_at":"2025-12-17T21:19:11.289698-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.15","title":"Monitor npm publish","description":"Watch the npm publish action:\nhttps://github.com/steveyegge/beads/actions/workflows/npm-publish.yml\n\nVerify at: https://www.npmjs.com/package/@anthropics/claude-code-beads-plugin/v/0.30.4\n\nCheck:\n```bash\nnpm view @anthropics/claude-code-beads-plugin@0.30.4 version\n```\n\n\n```verify\nnpm view @anthropics/claude-code-beads-plugin@0.30.4 version 2\u003e/dev/null | grep -q '0.30.4'\n```","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.091806-08:00","updated_at":"2025-12-17T21:46:46.333213-08:00","closed_at":"2025-12-17T21:46:46.333213-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.15","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.092205-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.15","depends_on_id":"bd-pbh.12","type":"blocks","created_at":"2025-12-17T21:19:11.301843-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.16","title":"Update Homebrew formula","description":"After GoReleaser completes, the Homebrew tap should be auto-updated.\n\nIf manual update needed:\n```bash\n./scripts/update-homebrew.sh v0.30.4\n```\n\nOr manually update steveyegge/homebrew-beads with new SHA256.\n\nVerify:\n```bash\nbrew update\nbrew info beads\n```\n","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T21:19:11.100213-08:00","updated_at":"2025-12-17T21:46:46.341942-08:00","closed_at":"2025-12-17T21:46:46.341942-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.16","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.100541-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.16","depends_on_id":"bd-pbh.13","type":"blocks","created_at":"2025-12-17T21:19:11.312625-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.17","title":"Install 0.30.4 Go binary locally","description":"Rebuild and install the Go binary:\n```bash\ngo install ./cmd/bd\n# OR\nmake install\n```\n\nVerify:\n```bash\nbd --version\n```\n\n\n```verify\nbd --version 2\u003e\u00261 | grep -q '0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.108597-08:00","updated_at":"2025-12-17T21:46:46.352702-08:00","closed_at":"2025-12-17T21:46:46.352702-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.17","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.108917-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.17","depends_on_id":"bd-pbh.13","type":"blocks","created_at":"2025-12-17T21:19:11.322091-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.18","title":"Restart beads daemon","description":"Kill any running daemons so they pick up the new version:\n```bash\nbd daemons killall\n```\n\nStart fresh daemon:\n```bash\nbd list # triggers daemon start\n```\n\nVerify daemon version:\n```bash\nbd version --daemon\n```\n\n\n```verify\nbd version --daemon 2\u003e\u00261 | grep -q '0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.11636-08:00","updated_at":"2025-12-17T21:46:46.364842-08:00","closed_at":"2025-12-17T21:46:46.364842-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.18","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.116706-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.18","depends_on_id":"bd-pbh.17","type":"blocks","created_at":"2025-12-17T21:19:11.330411-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.19","title":"Install 0.30.4 MCP server locally","description":"Upgrade the MCP server (after PyPI publish):\n```bash\npip install --upgrade beads-mcp\n# OR if using uv:\nuv tool upgrade beads-mcp\n```\n\nVerify:\n```bash\npip show beads-mcp | grep Version\n```\n\n\n```verify\npip show beads-mcp 2\u003e/dev/null | grep -q 'Version: 0.30.4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.124496-08:00","updated_at":"2025-12-17T21:46:46.372989-08:00","closed_at":"2025-12-17T21:46:46.372989-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.19","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.124829-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.19","depends_on_id":"bd-pbh.14","type":"blocks","created_at":"2025-12-17T21:19:11.343558-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.2","title":"Update CHANGELOG.md for 0.30.4","description":"1. Change `## [Unreleased]` to `## [0.30.4] - 2025-12-17`\n2. Add new empty `## [Unreleased]` section at top\n3. Ensure all changes since 0.30.3 are documented\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.956332-08:00","updated_at":"2025-12-17T21:46:46.214512-08:00","closed_at":"2025-12-17T21:46:46.214512-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.2","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.95683-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.20","title":"Update git hooks","description":"Install the updated hooks:\n```bash\nbd hooks install\n```\n\nVerify hook version:\n```bash\ngrep 'bd-hooks-version' .git/hooks/pre-commit\n```\n\n\n```verify\ngrep -q 'bd-hooks-version: 0.30.4' .git/hooks/pre-commit 2\u003e/dev/null || echo 'Hooks may not be installed - verify manually'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.13198-08:00","updated_at":"2025-12-17T21:46:46.381519-08:00","closed_at":"2025-12-17T21:46:46.381519-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.20","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.132306-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.20","depends_on_id":"bd-pbh.17","type":"blocks","created_at":"2025-12-17T21:19:11.352288-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.21","title":"Final release verification","description":"Verify all release artifacts are accessible:\n\n- [ ] `bd --version` shows 0.30.4\n- [ ] `bd version --daemon` shows 0.30.4\n- [ ] GitHub release exists: https://github.com/steveyegge/beads/releases/tag/v0.30.4\n- [ ] `brew upgrade beads \u0026\u0026 bd --version` shows 0.30.4 (if using Homebrew)\n- [ ] `pip show beads-mcp` shows 0.30.4\n- [ ] npm package available at 0.30.4\n- [ ] `bd info --whats-new` shows 0.30.4 notes\n\nRun final checks:\n```bash\nbd --version\nbd version --daemon\npip show beads-mcp | grep Version\nbd info --whats-new\n```\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.141249-08:00","updated_at":"2025-12-17T21:46:46.390985-08:00","closed_at":"2025-12-17T21:46:46.390985-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.141549-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.18","type":"blocks","created_at":"2025-12-17T21:19:11.364839-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.19","type":"blocks","created_at":"2025-12-17T21:19:11.373656-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.20","type":"blocks","created_at":"2025-12-17T21:19:11.382-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.15","type":"blocks","created_at":"2025-12-17T21:19:11.389733-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.21","depends_on_id":"bd-pbh.16","type":"blocks","created_at":"2025-12-17T21:19:11.398347-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.3","title":"Add 0.30.4 to info.go release notes","description":"Update cmd/bd/info.go versionChanges map with release notes for 0.30.4.\nInclude any workflow-impacting changes for --whats-new output.\n","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.966781-08:00","updated_at":"2025-12-17T21:46:46.222445-08:00","closed_at":"2025-12-17T21:46:46.222445-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.3","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.967287-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-pbh.3","depends_on_id":"bd-pbh.2","type":"blocks","created_at":"2025-12-17T21:19:11.149584-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.4","title":"Update .claude-plugin/plugin.json to 0.30.4","description":"Update version field in .claude-plugin/plugin.json:\n```json\n\"version\": \"0.30.4\"\n```\n\n\n```verify\njq -e '.version == \"0.30.4\"' .claude-plugin/plugin.json\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.976866-08:00","updated_at":"2025-12-17T21:46:46.23159-08:00","closed_at":"2025-12-17T21:46:46.23159-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.4","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.97729-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.5","title":"Update .claude-plugin/marketplace.json to 0.30.4","description":"Update version field in .claude-plugin/marketplace.json:\n```json\n\"version\": \"0.30.4\"\n```\n\n\n```verify\njq -e '.plugins[0].version == \"0.30.4\"' .claude-plugin/marketplace.json\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.985619-08:00","updated_at":"2025-12-17T21:46:46.239122-08:00","closed_at":"2025-12-17T21:46:46.239122-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.5","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.985942-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.6","title":"Update integrations/beads-mcp/pyproject.toml to 0.30.4","description":"Update version in pyproject.toml:\n```toml\nversion = \"0.30.4\"\n```\n\n\n```verify\ngrep -q 'version = \"0.30.4\"' integrations/beads-mcp/pyproject.toml\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:10.994004-08:00","updated_at":"2025-12-17T21:46:46.246574-08:00","closed_at":"2025-12-17T21:46:46.246574-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.6","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:10.994376-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.7","title":"Update beads_mcp/__init__.py to 0.30.4","description":"Update __version__ in integrations/beads-mcp/src/beads_mcp/__init__.py:\n```python\n__version__ = \"0.30.4\"\n```\n\n\n```verify\ngrep -q '__version__ = \"0.30.4\"' integrations/beads-mcp/src/beads_mcp/__init__.py\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.005334-08:00","updated_at":"2025-12-17T21:46:46.254885-08:00","closed_at":"2025-12-17T21:46:46.254885-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.7","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.005699-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.8","title":"Update npm-package/package.json to 0.30.4","description":"Update version field in npm-package/package.json:\n```json\n\"version\": \"0.30.4\"\n```\n\n\n```verify\njq -e '.version == \"0.30.4\"' npm-package/package.json\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.014905-08:00","updated_at":"2025-12-17T21:46:46.268821-08:00","closed_at":"2025-12-17T21:46:46.268821-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.8","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.01529-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pbh.9","title":"Update hook templates to 0.30.4","description":"Update bd-hooks-version comment in all 4 hook templates:\n- cmd/bd/templates/hooks/pre-commit\n- cmd/bd/templates/hooks/post-merge\n- cmd/bd/templates/hooks/pre-push\n- cmd/bd/templates/hooks/post-checkout\n\nEach should have:\n```bash\n# bd-hooks-version: 0.30.4\n```\n\n\n```verify\ngrep -l 'bd-hooks-version: 0.30.4' cmd/bd/templates/hooks/* | wc -l | grep -q '4'\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T21:19:11.0248-08:00","updated_at":"2025-12-17T21:46:46.27561-08:00","closed_at":"2025-12-17T21:46:46.27561-08:00","labels":["workflow"],"dependencies":[{"issue_id":"bd-pbh.9","depends_on_id":"bd-pbh","type":"parent-child","created_at":"2025-12-17T21:19:11.025124-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-pdr2","title":"Consider backwards compatibility for ready() and list() return type change","description":"PR #481 changed the return types of `ready()` and `list()` from `list[Issue]` to `list[IssueMinimal] | CompactedResult`. This is a breaking change for MCP clients.\n\n## Impact Assessment\nBreaking change affects:\n- Any MCP client expecting `list[Issue]` from ready()\n- Any MCP client expecting `list[Issue]` from list()\n- Client code that accesses full Issue fields (description, design, acceptance_criteria, timestamps, dependencies, dependents)\n\n## Current Behavior\n- ready() returns `list[IssueMinimal] | CompactedResult`\n- list() returns `list[IssueMinimal] | CompactedResult`\n- show() still returns full `Issue` (good)\n\n## Considerations\n**Pros of current approach:**\n- Forces clients to use show() for full details (good for context efficiency)\n- Simple mental model (always use show for full data)\n- Documentation warns about this\n\n**Cons:**\n- Clients expecting list[Issue] will break\n- No graceful degradation option\n- No migration period\n\n## Potential Solutions\n1. Add optional parameter `full_details=false` to ready/list (would increase payload)\n2. Create separate tools: ready_minimal/list_minimal + ready_full/list_full\n3. Accept breaking change and document upgrade path (current approach)\n4. Version the MCP server and document migration guide\n\n## Recommendation\nCurrent approach (solution 3) is reasonable if:\n- Changelog clearly documents the breaking change\n- Migration guide provided to clients\n- Error handling is graceful for clients expecting specific fields","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:24:56.460465-08:00","updated_at":"2025-12-14T14:24:56.460465-08:00","dependencies":[{"issue_id":"bd-pdr2","depends_on_id":"bd-otf4","type":"discovered-from","created_at":"2025-12-14T14:24:56.461959-08:00","created_by":"stevey","metadata":"{}"}]} +{"id":"bd-pe4s","title":"JSON test issue","description":"Line 1\nLine 2\nLine 3","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T16:14:36.969074-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pgcs","title":"Clean up orphaned child issues (bd-cb64c226.*, bd-cbed9619.*)","description":"## Problem\n\nEvery bd command shows warnings about 12 orphaned child issues:\n- bd-cb64c226.1, .6, .8, .9, .10, .12, .13\n- bd-cbed9619.1, .2, .3, .4, .5\n\nThese are hierarchical IDs (parent.child format) where the parent issues no longer exist.\n\n## Impact\n\n- Clutters output of every bd command\n- Confusing for users\n- Indicates incomplete cleanup of deleted parent issues\n\n## Proposed Solution\n\n1. Delete the orphaned issues since their parents no longer exist:\n ```bash\n bd delete bd-cb64c226.1 bd-cb64c226.6 bd-cb64c226.8 ...\n ```\n\n2. Or convert them to top-level issues if they contain useful content\n\n## Investigation Needed\n\n- What were the parent issues bd-cb64c226 and bd-cbed9619?\n- Why were they deleted without their children?\n- Should bd delete cascade to children automatically?","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T23:06:17.240571-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-pzw7","title":"gt handoff deadlock at handoff.go:125","notes":"When running 'gt handoff -m \"message\"' after successful MR submit, go panics with 'fatal error: all goroutines are asleep - deadlock\\!' at handoff.go:125. The shutdown request still appears to be sent successfully but the command crashes. Stack trace shows issue is in runHandoff select statement.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-19T23:22:12.46315-08:00","updated_at":"2025-12-19T23:22:18.613883-08:00"} +{"id":"bd-qioh","title":"Standardize error handling: replace direct fmt.Fprintf+os.Exit with FatalError","description":"Code health review found inconsistent error handling patterns:\n\nPattern A (preferred): FatalError() from errors.go:21-24\nPattern B (inconsistent): Direct fmt.Fprintf(os.Stderr) + os.Exit(1)\n\nAffected files:\n- delete.go:35-49 uses direct pattern\n- create.go:213 ignores error silently\n- Various other commands\n\nFix: Standardize on FatalError() wrapper for consistent error messages and testability.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-16T18:17:19.309394-08:00","updated_at":"2025-12-16T18:17:19.309394-08:00","dependencies":[{"issue_id":"bd-qioh","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:05.953559-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-qkw9","title":"Run bump-version.sh {{version}}","description":"Run ./scripts/bump-version.sh {{version}} to update version in all files","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:55:58.841424-08:00","updated_at":"2025-12-20T17:59:26.262877-08:00","closed_at":"2025-12-20T01:18:48.99813-08:00","dependencies":[{"issue_id":"bd-qkw9","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:14.786027-08:00","created_by":"daemon"}]} +{"id":"bd-qqc","title":"Release v{{version}}","description":"Version bump workflow for beads release {{version}}.\n\n## Variables\n- `{{version}}` - The new version number (e.g., 0.31.0)\n- `{{date}}` - Release date (YYYY-MM-DD format)\n\n## Workflow Steps\n1. Kill running daemons\n2. Run tests and linting\n3. Bump version in all files (10 files total)\n4. Update cmd/bd/info.go with release notes\n5. Commit and push version bump\n6. Create and push git tag\n7. Update Homebrew formula\n8. Upgrade local Homebrew installation\n9. Verify installation\n\n## Files Updated by bump-version.sh\n- cmd/bd/version.go\n- .claude-plugin/plugin.json\n- .claude-plugin/marketplace.json\n- integrations/beads-mcp/pyproject.toml\n- integrations/beads-mcp/src/beads_mcp/__init__.py\n- README.md\n- npm-package/package.json\n- cmd/bd/templates/hooks/* (4 files)\n- CHANGELOG.md\n\n## Manual Step Required\n- cmd/bd/info.go - Add versionChanges entry with release notes","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-18T12:59:00.610371-08:00","updated_at":"2025-12-20T17:59:26.263219-08:00","closed_at":"2025-12-20T01:18:46.71424-08:00","labels":["template"]} +{"id":"bd-qqc.1","title":"Update version to {{version}} in version.go","description":"Edit cmd/bd/version.go line 17:\n\n```go\nVersion = \"{{version}}\"\n```\n\nVerify with: `grep 'Version =' cmd/bd/version.go`","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:13.887087-08:00","updated_at":"2025-12-18T23:34:18.630067-08:00","closed_at":"2025-12-18T22:41:41.82664-08:00","dependencies":[{"issue_id":"bd-qqc.1","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:13.887655-08:00","created_by":"stevey"}]} +{"id":"bd-qqc.10","title":"Upgrade local Homebrew installation","description":"Upgrade bd via Homebrew:\n\n```bash\nbrew update\nbrew upgrade bd\n/opt/homebrew/bin/bd version # Verify shows {{version}}\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:37.60241-08:00","updated_at":"2025-12-18T23:07:55.686598-08:00","closed_at":"2025-12-18T22:52:00.331429-08:00","dependencies":[{"issue_id":"bd-qqc.10","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:37.603893-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.10","depends_on_id":"bd-qqc.9","type":"blocks","created_at":"2025-12-18T22:43:21.458817-08:00","created_by":"daemon"}]} +{"id":"bd-qqc.11","title":"Update go install bd to {{version}}","description":"Rebuild and install bd to ~/go/bin:\n\n```bash\ngo install ./cmd/bd\n~/go/bin/bd version # Verify shows {{version}}\n```\n\nNote: If ~/go/bin is in PATH before /opt/homebrew/bin, this is the version that runs by default.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:07:55.838013-08:00","updated_at":"2025-12-18T23:09:05.775582-08:00","closed_at":"2025-12-18T23:09:05.775582-08:00","dependencies":[{"issue_id":"bd-qqc.11","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T23:07:55.838432-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.11","depends_on_id":"bd-qqc.10","type":"blocks","created_at":"2025-12-18T23:08:19.629947-08:00","created_by":"daemon"}]} +{"id":"bd-qqc.12","title":"Restart daemon with {{version}}","description":"Restart the bd daemon to pick up new version:\n\n```bash\nbd daemon --stop\nbd daemon --start\nbd daemon --health # Verify Version: {{version}}\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:08:04.155448-08:00","updated_at":"2025-12-18T23:09:05.777375-08:00","closed_at":"2025-12-18T23:09:05.777375-08:00","dependencies":[{"issue_id":"bd-qqc.12","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T23:08:04.155832-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.12","depends_on_id":"bd-qqc.11","type":"blocks","created_at":"2025-12-18T23:08:19.779897-08:00","created_by":"daemon"}]} +{"id":"bd-qqc.13","title":"Upgrade beads-mcp to {{version}}","description":"Upgrade the MCP server via pip:\n\n```bash\npip install --upgrade beads-mcp\npip show beads-mcp | grep Version # Verify {{version}}\n```\n\nNote: Restart Claude Code or MCP session to use new version.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:08:04.318233-08:00","updated_at":"2025-12-18T23:09:05.77824-08:00","closed_at":"2025-12-18T23:09:05.77824-08:00","dependencies":[{"issue_id":"bd-qqc.13","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T23:08:04.318709-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.13","depends_on_id":"bd-qqc.11","type":"blocks","created_at":"2025-12-18T23:08:19.927825-08:00","created_by":"daemon"}]} +{"id":"bd-qqc.2","title":"Add {{version}} to versionChanges in info.go","description":"Add new entry at the TOP of versionChanges array in cmd/bd/info.go:\n\n```go\n{\n Version: \"{{version}}\",\n Date: \"{{date}}\",\n Changes: []string{\n // Add notable changes here\n },\n},\n```\n\nCopy changes from CHANGELOG.md [Unreleased] section.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:27.032117-08:00","updated_at":"2025-12-18T23:34:18.631996-08:00","closed_at":"2025-12-18T22:41:41.836137-08:00","dependencies":[{"issue_id":"bd-qqc.2","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:27.032746-08:00","created_by":"stevey"}]} +{"id":"bd-qqc.3","title":"Update CHANGELOG.md for {{version}}","description":"In CHANGELOG.md:\n\n1. Change `## [Unreleased]` section header to `## [{{version}}] - {{date}}`\n2. Add new empty `## [Unreleased]` section above it\n3. Review and clean up the changes list\n\nFormat:\n```markdown\n## [Unreleased]\n\n## [{{version}}] - {{date}}\n\n### Added\n- ...\n\n### Changed\n- ...\n\n### Fixed\n- ...\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:39.738561-08:00","updated_at":"2025-12-18T23:34:18.629213-08:00","closed_at":"2025-12-18T22:41:41.846609-08:00","dependencies":[{"issue_id":"bd-qqc.3","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:39.739138-08:00","created_by":"stevey"}]} +{"id":"bd-qqc.4","title":"Run tests and verify build","description":"Run the test suite to verify nothing is broken:\n\n```bash\n./scripts/test.sh\n```\n\nOr manually:\n```bash\ngo build ./cmd/bd/...\ngo test ./...\n```\n\nFix any failures before proceeding.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:59:52.308314-08:00","updated_at":"2025-12-18T23:34:18.631671-08:00","closed_at":"2025-12-18T22:41:41.856318-08:00","dependencies":[{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T12:59:52.308943-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc.1","type":"blocks","created_at":"2025-12-18T13:00:40.62142-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc.2","type":"blocks","created_at":"2025-12-18T13:00:45.820132-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.4","depends_on_id":"bd-qqc.3","type":"blocks","created_at":"2025-12-18T13:00:51.014568-08:00","created_by":"stevey"}]} +{"id":"bd-qqc.5","title":"Commit release v{{version}}","description":"Stage and commit the version bump:\n\n```bash\ngit add cmd/bd/version.go cmd/bd/info.go CHANGELOG.md\ngit commit -m \"release: v{{version}}\"\n```\n\nDo NOT push yet - tag first.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T13:00:04.097628-08:00","updated_at":"2025-12-18T23:34:18.630946-08:00","closed_at":"2025-12-18T22:41:41.864839-08:00","dependencies":[{"issue_id":"bd-qqc.5","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T13:00:04.098265-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.5","depends_on_id":"bd-qqc.4","type":"blocks","created_at":"2025-12-18T13:01:02.275008-08:00","created_by":"stevey"}]} +{"id":"bd-qqc.6","title":"Create git tag v{{version}}","description":"Create the release tag:\n\n```bash\ngit tag v{{version}}\n```\n\nVerify: `git tag | grep {{version}}`","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T13:00:15.495086-08:00","updated_at":"2025-12-18T23:34:18.632308-08:00","closed_at":"2025-12-18T22:41:41.874099-08:00","dependencies":[{"issue_id":"bd-qqc.6","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T13:00:15.496036-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.6","depends_on_id":"bd-qqc.5","type":"blocks","created_at":"2025-12-18T13:01:07.478315-08:00","created_by":"stevey"}]} +{"id":"bd-qqc.7","title":"Push release v{{version}} to remote","description":"Push the commit and tag:\n\n```bash\ngit push \u0026\u0026 git push --tags\n```\n\nVerify on GitHub that the tag appears in releases.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T13:00:26.933082-08:00","updated_at":"2025-12-18T23:34:18.630538-08:00","closed_at":"2025-12-18T22:41:41.882956-08:00","dependencies":[{"issue_id":"bd-qqc.7","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T13:00:26.933687-08:00","created_by":"stevey"},{"issue_id":"bd-qqc.7","depends_on_id":"bd-qqc.6","type":"blocks","created_at":"2025-12-18T13:01:12.711161-08:00","created_by":"stevey"}]} +{"id":"bd-qqc.8","title":"Create and push git tag v{{version}}","description":"Create the release tag and push it:\n\n```bash\ngit tag v{{version}}\ngit push origin v{{version}}\n```\n\nThis triggers the GoReleaser GitHub Action to build release binaries.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:34.659927-08:00","updated_at":"2025-12-18T22:47:14.054232-08:00","closed_at":"2025-12-18T22:47:14.054232-08:00","dependencies":[{"issue_id":"bd-qqc.8","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:34.660248-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.8","depends_on_id":"bd-vgi5","type":"blocks","created_at":"2025-12-18T22:43:21.209529-08:00","created_by":"daemon"}]} +{"id":"bd-qqc.9","title":"Update Homebrew formula","description":"Update the Homebrew tap with new version:\n\n```bash\n./scripts/update-homebrew.sh {{version}}\n```\n\nThis script waits for GitHub Actions to complete (~5 min), then updates the formula with new SHA256 hashes.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:35.815096-08:00","updated_at":"2025-12-18T22:51:07.863862-08:00","closed_at":"2025-12-18T22:51:07.863862-08:00","dependencies":[{"issue_id":"bd-qqc.9","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:35.816752-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.9","depends_on_id":"bd-qqc.8","type":"blocks","created_at":"2025-12-18T22:43:21.332955-08:00","created_by":"daemon"}]} +{"id":"bd-r36u","title":"gt mq list shows empty when MRs exist","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-20T01:13:07.561256-08:00","updated_at":"2025-12-20T01:13:07.561256-08:00"} +{"id":"bd-r46","title":"Support --reason flag in daemon mode for reopen command","description":"The reopen.go command has a TODO at line 61 to add reason as a comment once RPC supports AddComment. Currently --reason flag is ignored in daemon mode with a warning.","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-21T18:55:10.773626-05:00","updated_at":"2025-11-21T18:55:10.773626-05:00"} +{"id":"bd-r6a","title":"Redesign workflow system: templates as native Beads","description":"## Problem\n\nThe current workflow system (YAML templates in cmd/bd/templates/workflows/) is architecturally flawed:\n\n1. **Out-of-band data plane** - YAML files are a parallel system outside Beads itself\n2. **Heavyweight DSL** - YAML is gross; even TOML would have been better, but neither is ideal\n3. **Not graph-native** - Beads IS already a dependency graph with priorities, so why reinvent it?\n4. **Can't use bd commands on templates** - They're opaque YAML, not viewable/editable Beads\n\n## The Right Design\n\n**Templates should be Beads themselves.**\n\nA \"workflow template\" should be:\n- An epic marked as a template (via label, type, or prefix like `tpl-`)\n- Child issues with dependencies between them (using normal bd dep)\n- Titles and descriptions containing `{{variable}}` placeholders\n- Normal priorities that control serialization order\n\n\"Instantiation\" becomes:\n1. Clone the template subgraph (epic + children + dependencies)\n2. Substitute variables in titles/descriptions\n3. Generate new IDs for all cloned issues\n4. Return the new epic ID\n\n## Benefits\n\n- **No YAML** - Templates are just Beads\n- **Use existing tools** - `bd show`, `bd edit`, `bd dep` work on templates\n- **Graph-native** - Dependencies are real Beads dependencies\n- **Simpler codebase** - Remove all the YAML parsing/workflow code\n- **Composable** - Templates can reference other templates\n\n## Tasks\n\n1. Delete the YAML workflow system code (revert recent push + remove existing workflow code)\n2. Design template marking convention (label? type? id prefix?)\n3. Implement `bd template create` or `bd clone --as-template`\n4. Implement `bd template instantiate \u003ctemplate-id\u003e --var key=value`\n5. Migrate version-bump workflow to native Beads template\n6. Update documentation","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-17T22:41:57.359643-08:00","updated_at":"2025-12-18T17:42:26.000769-08:00","closed_at":"2025-12-18T13:47:04.632525-08:00"} +{"id":"bd-r6a.1","title":"Revert/remove YAML workflow system","description":"Revert the recent commit and remove all YAML workflow code:\n\n1. `git revert aae8407a` (the commit we just pushed with workflow fixes)\n2. Remove `cmd/bd/templates/workflows/` directory\n3. Remove workflow.go or gut it to minimal stub\n4. Remove WorkflowTemplate types from internal/types/workflow.go\n5. Remove any workflow-related RPC handlers\n\nKeep only minimal scaffolding if needed for the new template system.","status":"closed","issue_type":"task","created_at":"2025-12-17T22:42:07.339684-08:00","updated_at":"2025-12-17T22:46:08.606088-08:00","closed_at":"2025-12-17T22:46:08.606088-08:00","dependencies":[{"issue_id":"bd-r6a.1","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:42:07.340117-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-r6a.2","title":"Implement subgraph cloning with variable substitution","description":"Core implementation of template instantiation:\n\n1. Add `bd template instantiate \u003ctemplate-id\u003e [--var key=value]...` command\n2. Implement subgraph loading:\n - Load template epic\n - Recursively load all children (and their children)\n - Load all dependencies between issues in the subgraph\n3. Implement variable substitution:\n - Scan titles and descriptions for `{{name}}` patterns\n - Replace with provided values\n - Error on missing required variables (or prompt interactively)\n4. Implement cloning:\n - Generate new IDs for all issues\n - Create cloned issues with substituted text\n - Remap and create dependencies\n5. Return the new epic ID\n\nConsider adding `--dry-run` flag to preview what would be created.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-17T22:43:25.179848-08:00","updated_at":"2025-12-17T23:02:29.034444-08:00","closed_at":"2025-12-17T23:02:29.034444-08:00","dependencies":[{"issue_id":"bd-r6a.2","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:25.180286-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-r6a.2","depends_on_id":"bd-r6a.1","type":"blocks","created_at":"2025-12-17T22:44:03.15413-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-r6a.3","title":"Create version-bump template as native Beads","description":"Migrate the version-bump workflow from YAML to a native Beads template:\n\n1. Create epic with template label: Release {{version}}\n2. Create child tasks for each step (update version files, changelog, commit, push, publish)\n3. Set up dependencies between tasks\n4. Add verification commands in task descriptions\n\nThis serves as both migration and validation of the new system.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T22:43:40.694931-08:00","updated_at":"2025-12-18T17:42:26.001149-08:00","closed_at":"2025-12-18T13:02:09.039457-08:00","dependencies":[{"issue_id":"bd-r6a.3","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:40.695392-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-r6a.3","depends_on_id":"bd-r6a.2","type":"blocks","created_at":"2025-12-17T22:44:03.311902-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-r6a.4","title":"Add bd template list command","description":"Add a convenience command to list available templates:\n\nbd template list\n\nThis is equivalent to 'bd list --label=template' but more discoverable.\nCould also show variable placeholders found in each template.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-17T22:43:47.525316-08:00","updated_at":"2025-12-17T23:02:45.700582-08:00","closed_at":"2025-12-17T23:02:45.700582-08:00","dependencies":[{"issue_id":"bd-r6a.4","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:47.525743-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-r6a.4","depends_on_id":"bd-r6a.2","type":"blocks","created_at":"2025-12-17T22:44:03.474353-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-r6a.5","title":"Update documentation for template system","description":"Update AGENTS.md and help text to document the new template system:\n\n- How to create a template (epic + template label + child issues)\n- How to define variables (just use {{name}} placeholders)\n- How to instantiate (bd template instantiate)\n- Migration from YAML workflows (if any users had custom ones)","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-17T22:43:55.461345-08:00","updated_at":"2025-12-18T17:42:26.001474-08:00","closed_at":"2025-12-18T13:46:53.446262-08:00","dependencies":[{"issue_id":"bd-r6a.5","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:55.461763-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-r6a.5","depends_on_id":"bd-r6a.3","type":"blocks","created_at":"2025-12-17T22:44:03.632404-08:00","created_by":"daemon","metadata":"{}"},{"issue_id":"bd-r6a.5","depends_on_id":"bd-r6a.4","type":"blocks","created_at":"2025-12-17T22:44:03.788517-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-rgd7","title":"Update CHANGELOG.md with release notes","description":"Add release notes for 0.32.1: MCP output control params (#667), pin field fix","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:16.031879-08:00","updated_at":"2025-12-20T21:54:07.982164-08:00","closed_at":"2025-12-20T21:54:07.982164-08:00","close_reason":"Added 0.32.1 release notes","dependencies":[{"issue_id":"bd-rgd7","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:16.034926-08:00","created_by":"daemon"}]} +{"id":"bd-rgyd","title":"Split internal/storage/sqlite/queries.go (1586 lines)","description":"Code health review found queries.go is too large at 1586 lines with:\n\n- Issue scanning logic duplicated between transaction.go and queries.go\n- Timestamp defensive fixes duplicated in CreateIssue, CreateIssues, batch_ops.go\n- Multiple similar patterns that should be consolidated\n\nAlso: transaction.go at 1284 lines, dependencies.go at 893 lines\n\nRecommendation:\n1. Extract common scanning into shared function\n2. Consolidate timestamp defensive fixes\n3. Split queries.go by domain (CRUD, search, batch, events)","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-16T18:17:23.85869-08:00","updated_at":"2025-12-16T18:17:23.85869-08:00","dependencies":[{"issue_id":"bd-rgyd","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.062038-08:00","created_by":"daemon","metadata":"{}"}]} +{"id":"bd-rp4o","title":"Deleted issues resurrect during bd sync (tombstones not propagating)","description":"## Problem\n\nWhen issues are deleted with bd delete --force, they get deleted from the local DB but resurrect during the next bd sync.\n\n## Reproduction\n\n1. Observe orphan warnings (bd-cb64c226.*, bd-cbed9619.*)\n2. Delete them: bd delete bd-cb64c226.1 ... --force\n3. Run bd sync\n4. Orphan warnings reappear - issues were resurrected!\n\n## Root Cause Hypothesis\n\nThe sync branch workflow (beads-sync) has the old state before deletions. When bd sync pulls from beads-sync and copies JSONL to main, the deleted issues are re-imported.\n\nTombstones may not be properly:\n1. Written to beads-sync during export\n2. Propagated during pull/merge\n3. Honored during import\n\n## Related\n\n- bd-7b7h: chicken-and-egg sync.branch bug (same workflow)\n- bd-ncwo: ID-based fallback matching to prevent ghost resurrection\n\n## Files to Investigate\n\n- cmd/bd/sync.go (export/import flow)\n- internal/syncbranch/worktree.go (PullFromSyncBranch, copyJSONLToMainRepo)\n- internal/importer/ (tombstone handling)","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T23:09:43.072696-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-rupw","title":"Run bump-version.sh 0.30.7","description":"Run ./scripts/bump-version.sh 0.30.7 to update version in all files","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649647-08:00","updated_at":"2025-12-19T22:57:31.512956-08:00","closed_at":"2025-12-19T22:57:31.512956-08:00","dependencies":[{"issue_id":"bd-rupw","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.653475-08:00","created_by":"stevey"}]} +{"id":"bd-s0qf","title":"GH#405: Fix prefix parsing with hyphens - multi-hyphen prefixes parsed incorrectly","description":"Fixed: ExtractIssuePrefix was falling back to first-hyphen for word-like suffixes, breaking multi-hyphen prefixes like 'hacker-news' and 'me-py-toolkit'.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:13:56.951359-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-s2t","title":"wish: a 'continue' or similar cmd/flag which means alter last issue","description":"so many time I create an issue and then have another thought: 'oh, before I did X and it crashed there was ZZZ happening' or 'actually that is P4 not P2'. It would be nice if when `bd {cmd}` is used without a {title} or {id} it just adds or updates the most recently touched issue.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-08T06:46:37.529160416-07:00","updated_at":"2025-12-08T06:46:37.529160416-07:00"} +{"id":"bd-sh4c","title":"Improve test coverage for cmd/bd/setup (28.4% ā†’ 50%)","description":"The setup package has only 28.4% test coverage. Setup commands are critical for first-time user experience.\n\nCurrent coverage: 28.4%\nTarget coverage: 50%","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T20:43:04.409346-08:00","updated_at":"2025-12-13T21:01:18.98833-08:00"} +{"id":"bd-si4g","title":"Verify release artifacts","description":"Check GitHub releases page - binaries for darwin/linux/windows should be available","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:04.183029-08:00","updated_at":"2025-12-20T00:49:51.92894-08:00","closed_at":"2025-12-20T00:25:52.720816-08:00","dependencies":[{"issue_id":"bd-si4g","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.173619-08:00","created_by":"daemon"},{"issue_id":"bd-si4g","depends_on_id":"bd-otli","type":"blocks","created_at":"2025-12-19T22:56:23.428507-08:00","created_by":"daemon"}]} +{"id":"bd-siz1","title":"GH#532: bd sync circular error (suggests running bd sync)","description":"bd sync error message recommends running bd sync to fix the bd sync error. Fix error handling to provide useful guidance. See GitHub issue #532.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:04:00.543573-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-su45","title":"Protect pinned issues from bd cleanup/compact","description":"Update bd cleanup and bd compact to never delete pinned issues, even if they are closed. Pinned issues should persist indefinitely as reference material.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:46.204783-08:00","updated_at":"2025-12-19T17:43:35.712617-08:00","closed_at":"2025-12-19T00:43:04.06406-08:00","dependencies":[{"issue_id":"bd-su45","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.64582-08:00","created_by":"daemon"},{"issue_id":"bd-su45","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.857586-08:00","created_by":"daemon"}]} +{"id":"bd-sumr","title":"Merge: bd-t4sb","description":"branch: polecat/capable\ntarget: main\nsource_issue: bd-t4sb\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:22:21.343724-08:00","updated_at":"2025-12-19T23:22:21.343724-08:00"} +{"id":"bd-svb5","title":"GH#505: Add bd reset/wipe command","description":"Add command to cleanly reset/wipe beads database. User reports painful manual process to start fresh. See GitHub issue #505.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:03:42.160966-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} +{"id":"bd-t4sb","title":"Work on beads-d8h: Fix prefix mismatch false positive wit...","description":"Work on beads-d8h: Fix prefix mismatch false positive with multi-hyphen prefixes like 'asianops-audit-' (GH#422). When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:19.545069-08:00","updated_at":"2025-12-19T23:28:32.429127-08:00","closed_at":"2025-12-19T23:21:45.471711-08:00","close_reason":"Fixed multi-hyphen prefix false positive in ValidateIDFormat (GH#422)"} +{"id":"bd-t4u1","title":"False positive detection by Kaspersky Antivirus (Trojan)","description":"Kaspersky Antivirus falsely detects beads (bd.exe v0.23.1) as a Trojan (PDM:Trojan.Win32.Generic) and removes it.\nEvent: Malicious object detected\nComponent: System Watcher\nObject name: bd.exe\n","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-20T18:56:12.498187-05:00","updated_at":"2025-11-20T18:56:12.498187-05:00"} +{"id":"bd-tbz3","title":"bd init UX Improvements","description":"bd init leaves users with incomplete setup, requiring manual bd doctor --fix. Issues found: (1) git hooks not installed if user declines prompt, (2) no auto-migration when CLI is upgraded, (3) stale merge driver configs from old versions. Fix by making bd init more robust with better defaults and auto-migration.","status":"open","priority":1,"issue_type":"epic","created_at":"2025-11-21T23:16:00.333543-08:00","updated_at":"2025-11-21T23:16:37.811233-08:00"} +{"id":"bd-tggf","title":"Code Health Review Dec 2025: Technical Debt Cleanup","description":"Epic grouping technical debt identified in the Dec 16, 2025 code health review.\n\n## Overall Health Grade: B (Solid foundation, needs cleanup)\n\n### P1 (High Priority):\n- bd-74w1: Consolidate duplicate path-finding utilities\n- bd-b6xo: Remove/fix ClearDirtyIssues() race condition\n- bd-b3og: Fix TestImportBugIntegration deadlock\n\n### P2 (Medium Priority):\n- bd-05a8: Split large files (doctor.go, sync.go)\n- bd-qioh: Standardize error handling patterns\n- bd-rgyd: Split queries.go (1586 lines)\n- bd-9g1z: Fix/remove TestFindJSONLPathDefault\n\n### P3 (Low Priority):\n- bd-ork0: Add comments to 30+ ignored errors\n- bd-4nqq: Remove dead test code in info_test.go\n- bd-dhza: Reduce global state in main.go\n\n## Key Areas:\n1. Code duplication in path utilities\n2. Large monolithic files (5 files \u003e1000 lines)\n3. Global state (25+ variables, 3 deprecated)\n4. Silent error suppression (30+ instances)\n5. Test gaps and dead test code\n6. Atomicity risks in batch operations","status":"open","priority":2,"issue_type":"epic","created_at":"2025-12-16T18:18:58.115507-08:00","updated_at":"2025-12-16T18:21:50.561709-08:00"} +{"id":"bd-thgk","title":"Improve test coverage for internal/compact (18.2% ā†’ 70%)","description":"The compact package has only 18.2% test coverage. This is a core package handling issue compaction and should have at least 70% coverage.\n\nKey functions needing tests:\n- runCompactSingle (0%)\n- runCompactAll (0%)\n- runCompactRPC (0%)\n- runCompactStatsRPC (0%)\n- runCompactAnalyze (0%)\n- runCompactApply (0%)\n- pruneDeletionsManifest (0%)\n\nCurrent coverage: 18.2%\nTarget coverage: 70%","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-13T20:42:58.455767-08:00","updated_at":"2025-12-13T21:01:15.070551-08:00"} +{"id":"bd-tj00","title":"Update local installation","description":"go build -o ~/.local/bin/bd ./cmd/bd \u0026\u0026 codesign -s - ~/.local/bin/bd","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:20.616907-08:00","updated_at":"2025-12-20T21:55:42.756171-08:00","closed_at":"2025-12-20T21:55:42.756171-08:00","close_reason":"Installed bd 0.32.1","dependencies":[{"issue_id":"bd-tj00","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:20.619834-08:00","created_by":"daemon"},{"issue_id":"bd-tj00","depends_on_id":"bd-9l0h","type":"blocks","created_at":"2025-12-20T21:53:29.817989-08:00","created_by":"daemon"}]} +{"id":"bd-tm2p","title":"Polecats get stuck on interactive shell prompts (cp/mv/rm -i)","description":"During swarm operations, polecats frequently get stuck waiting for interactive prompts from shell commands like:\n- cp prompting 'overwrite file? (y/n)'\n- mv prompting 'overwrite file? (y/n)' \n- rm prompting 'remove file?'\n\nThis happens because macOS aliases or shell configs may have -i flags set by default.\n\nRoot cause: Claude Code runs commands that trigger interactive confirmation prompts, but cannot respond to them, causing the agent to hang indefinitely.\n\nObserved in: Multiple polecats during GH issues swarm (Dec 2024)\n- Derrick, Roustabout, Prospector, Warboy all got stuck on y/n prompts\n\nSuggested fixes:\n1. AGENTS.md should instruct agents to always use -f flag with cp/mv/rm\n2. Polecat startup could set shell aliases to use non-interactive versions\n3. bd prime hook could include guidance about non-interactive commands\n4. Consider detecting stuck prompts and auto-recovering","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-14T16:51:24.572271-08:00","updated_at":"2025-12-17T23:13:40.536312-08:00","closed_at":"2025-12-17T19:13:04.074424-08:00"} +{"id":"bd-toy3","title":"Test hook","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T18:33:39.717036-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-tvu3","title":"Improve test coverage for internal/beads (48.1% ā†’ 70%)","description":"The beads package is a core package with 48.1% coverage. As the primary package for issue management, it should have at least 70% coverage.\n\nCurrent coverage: 48.1%\nTarget coverage: 70%","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-13T20:42:59.739142-08:00","updated_at":"2025-12-13T21:01:14.874359-08:00"} +{"id":"bd-u0g9","title":"GH#405: Prefix parsing with hyphens treats first segment as prefix","description":"Prefix me-py-toolkit gets parsed as just me- when detecting mismatches. Fix prefix parsing to handle multi-hyphen prefixes. See GitHub issue #405.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:18.354066-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-u0sb","title":"Merge: bd-uqfn","description":"branch: polecat/cheedo\ntarget: main\nsource_issue: bd-uqfn\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-20T01:11:52.033964-08:00","updated_at":"2025-12-20T01:11:52.033964-08:00"} +{"id":"bd-umbf","title":"Design contributor namespace isolation for beads pollution prevention","description":"## Problem\n\nWhen contributors work on beads-the-project using beads-the-tool, their personal work-tracking issues leak into PRs. The .beads/issues.jsonl is intentionally tracked (it's the project's issue database), but contributors' local issues pollute the diff.\n\nThis is a recursion problem unique to self-hosting projects.\n\n## Possible Solutions to Explore\n\n1. **Contributor namespaces** - Each contributor gets a private prefix (e.g., `bd-steve-xxxx`) that's gitignored or filtered\n2. **Separate database** - Contributors use BEADS_DIR pointing elsewhere for personal tracking\n3. **Issue ownership/visibility flags** - Mark issues as \"local-only\" vs \"project\"\n4. **Prefix-based filtering** - Configure which prefixes are committed vs ignored\n\n## Design Considerations\n\n- Should be zero-friction for contributors (no manual setup)\n- Must not break existing workflows\n- Needs to work with sync/collaboration features\n- Consider: what if a \"personal\" issue graduates to \"project\" issue?\n\n## Expansion Needed\n\nThis is a placeholder. Needs detailed design exploration before implementation.","status":"open","priority":2,"issue_type":"feature","created_at":"2025-12-13T18:00:29.638743-08:00","updated_at":"2025-12-13T18:00:41.345673-08:00"} +{"id":"bd-uqfn","title":"Work on beads-wkt: Output control parameters for MCP tool...","description":"Work on beads-wkt: Output control parameters for MCP tools (GH#622). Add brief, fields, max_description_length params to ready/list/show. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:57:10.675535-08:00","updated_at":"2025-12-20T00:49:51.929271-08:00","closed_at":"2025-12-19T23:28:25.362931-08:00","close_reason":"Implemented output control parameters for MCP tools (GH#622)"} +{"id":"bd-usro","title":"Rename 'template instantiate' to 'mol bond'","description":"Rename the template instantiation command to match molecule metaphor.\n\nCurrent: bd template instantiate \u003cid\u003e --var key=value\nTarget: bd mol bond \u003cid\u003e --var key=value\n\nChanges needed:\n- Add 'mol' command group (or extend existing)\n- Add 'bond' subcommand that wraps template instantiate logic\n- Keep 'template instantiate' as deprecated alias for backward compat\n- Update help text and docs to use molecule terminology\n\nThe 'bond' verb captures:\n1. Chemistry metaphor (molecules bond to form structures)\n2. Dependency linking (child issues bonded in a DAG)\n3. Short and active\n\nSee also: molecule execution model in Gas Town","status":"open","priority":1,"issue_type":"feature","created_at":"2025-12-20T16:56:37.582795-08:00","updated_at":"2025-12-20T16:56:37.582795-08:00"} +{"id":"bd-uutv","title":"Work on beads-rs0: Namepool configuration for themed pole...","description":"Work on beads-rs0: Namepool configuration for themed polecat names. See bd show beads-rs0 for full details.","status":"closed","priority":2,"issue_type":"task","assignee":"beads/polecat-02","created_at":"2025-12-19T21:49:48.129778-08:00","updated_at":"2025-12-19T21:59:25.565894-08:00","closed_at":"2025-12-19T21:59:25.565894-08:00","close_reason":"Completed work on beads-rs0: Implemented themed namepool feature"} +{"id":"bd-vgi5","title":"Push version bump to GitHub","description":"git push origin main - triggers CI but no release yet.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:05.363604-08:00","updated_at":"2025-12-18T22:46:57.50777-08:00","closed_at":"2025-12-18T22:46:57.50777-08:00","dependencies":[{"issue_id":"bd-vgi5","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.87736-08:00","created_by":"daemon"},{"issue_id":"bd-vgi5","depends_on_id":"bd-3ggb","type":"blocks","created_at":"2025-12-18T22:43:21.078208-08:00","created_by":"daemon"}]} +{"id":"bd-vpan","title":"Re: Thread Test 2","description":"Got your message. Testing reply feature.","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:29.144352-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-vpan","depends_on_id":"bd-x36g","type":"replies-to","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} +{"id":"bd-vs9","title":"Fix unparam unused parameter in cmd/bd/doctor.go:541","description":"Linting issue: checkHooksQuick - path is unused (unparam) at cmd/bd/doctor.go:541:22. Error: func checkHooksQuick(path string) string {","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:17.02177046-07:00","updated_at":"2025-12-17T23:13:40.535743-08:00","closed_at":"2025-12-17T16:46:11.028332-08:00"} +{"id":"bd-w193","title":"Work on beads-399: Add omitempty to JSONL fields for smal...","description":"Work on beads-399: Add omitempty to JSONL fields for smaller notifications. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:37.440894-08:00","updated_at":"2025-12-19T23:28:32.42751-08:00","closed_at":"2025-12-19T23:23:09.542288-08:00","close_reason":"Added omitempty to Description and Dependency.CreatedBy fields in types.go"} +{"id":"bd-wc2","title":"Test body-file","description":"This is a test description from a file.\n\nIt has multiple lines.\n","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T17:27:20.508724-08:00","updated_at":"2025-12-17T17:28:33.83142-08:00","closed_at":"2025-12-17T17:28:33.83142-08:00"} +{"id":"bd-whgv","title":"Merge: bd-401h","description":"branch: polecat/rictus\ntarget: main\nsource_issue: bd-401h\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:20:37.854953-08:00","updated_at":"2025-12-19T23:20:37.854953-08:00"} +{"id":"bd-x1xs","title":"Work on beads-1ra: Add molecules.jsonl as separate catalo...","description":"Work on beads-1ra: Add molecules.jsonl as separate catalog file for template molecules","status":"in_progress","priority":2,"issue_type":"task","assignee":"beads/polecat-01","created_at":"2025-12-19T20:17:44.840032-08:00","updated_at":"2025-12-19T20:17:44.905944-08:00"} +{"id":"bd-x36g","title":"Thread Test 2","description":"Testing direct mode","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:16.470631-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} +{"id":"bd-x3hi","title":"Support redirect files in .beads/ directory","description":"Gas Town creates polecat worktrees with .beads/redirect files that point to a shared beads database. The bd CLI should:\n\n1. When finding a .beads/ directory, check if it contains a 'redirect' file\n2. If redirect exists, read the relative path and use that as the beads directory\n3. This allows multiple git worktrees to share a single beads database\n\nExample:\n- polecats/alpha/.beads/redirect contains '../../mayor/rig/.beads'\n- bd commands from alpha should use mayor/rig/.beads\n\nCurrently bd ignores redirect files and either uses the local .beads/ or walks up to find a parent .beads/.\n\nRelated: gt-nriy (test message that can't be retrieved due to missing redirect support)","status":"open","priority":1,"issue_type":"feature","created_at":"2025-12-20T21:46:23.415172-08:00","updated_at":"2025-12-20T21:46:23.415172-08:00"} +{"id":"bd-x3j8","title":"Update info.go versionChanges","description":"Add 0.32.1 entry to versionChanges map in cmd/bd/info.go","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:17.344841-08:00","updated_at":"2025-12-20T21:54:31.906761-08:00","closed_at":"2025-12-20T21:54:31.906761-08:00","close_reason":"Added 0.32.1 to versionChanges","dependencies":[{"issue_id":"bd-x3j8","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:17.346736-08:00","created_by":"daemon"},{"issue_id":"bd-x3j8","depends_on_id":"bd-rgd7","type":"blocks","created_at":"2025-12-20T21:53:29.62309-08:00","created_by":"daemon"}]} +{"id":"bd-xctp","title":"GH#519: bd sync fails when sync.branch is currently checked-out branch","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:06:05.319281-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-xj2e","title":"GH#522: Add --type flag to bd update command","description":"Add --type flag to bd update for changing issue type (task/epic/bug/feature). Storage layer already supports it. See GitHub issue #522.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:12.506583-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} +{"id":"bd-y2v","title":"Refactor duplicate JSONL-from-git parsing code","description":"Both readFirstIssueFromGit() in init.go and importFromGit() in autoimport.go have similar code patterns for:\n1. Running git show \u003cref\u003e:\u003cpath\u003e\n2. Scanning the output with bufio.Scanner\n3. Parsing JSON lines\n\nCould be refactored to share a helper like:\n- readJSONLFromGit(gitRef, path string) ([]byte, error)\n- Or a streaming version: streamJSONLFromGit(gitRef, path string) (io.Reader, error)\n\nFiles:\n- cmd/bd/autoimport.go:225-256 (importFromGit)\n- cmd/bd/init.go:1212-1243 (readFirstIssueFromGit)\n\nPriority is low since code duplication is minimal and both functions work correctly.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-05T14:51:18.41124-08:00","updated_at":"2025-12-05T14:51:18.41124-08:00"} +{"id":"bd-y4vz","title":"Work on beads-eub: Consolidated context tool for MCP serv...","description":"Work on beads-eub: Consolidated context tool for MCP server (GH#636). Merge set_context, where_am_i, init into single 'context' tool. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:58.527144-08:00","updated_at":"2025-12-20T00:49:51.929597-08:00","closed_at":"2025-12-19T23:31:11.906952-08:00","close_reason":"Completed: Consolidated set_context, where_am_i, init into unified context tool"} +{"id":"bd-y8bj","title":"Auto-detect identity from directory context for bd mail","description":"Currently bd mail inbox defaults to git user name, requiring --identity flag with exact format.\n\n## Problem\n- Mail sent to `gastown/crew/max`\n- Max runs `bd mail inbox` ā†’ defaults to 'Steve Yegge' (git user)\n- Max must know to use `--identity 'gastown/crew/max'` with exact slashes\n\n## Proposed Fix\nAuto-detect identity from directory context when in a Gas Town workspace:\n- In `/Users/stevey/gt/gastown/crew/max`, infer identity = `gastown/crew/max`\n- Pattern: `\u003ctown\u003e/\u003crig\u003e/\u003crole\u003e/\u003cname\u003e` ā†’ `\u003crig\u003e/\u003crole\u003e/\u003cname\u003e`\n\n## Additional Improvements\n1. Support GT_IDENTITY env var (set by gt crew at / session spawning)\n2. Support identity in .beads/config.yaml\n3. Normalize format: accept both slashes and dashes as equivalent\n\n## Context\nDiscovered during crew-to-crew work assignment. Max couldn't see mail despite correct nudge because identity defaulted wrong.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-20T17:22:53.938586-08:00","updated_at":"2025-12-20T18:12:58.472262-08:00","closed_at":"2025-12-20T17:58:51.034201-08:00"} +{"id":"bd-y8tn","title":"Test Molecule","description":"A test molecule","status":"closed","priority":2,"issue_type":"molecule","created_at":"2025-12-19T18:30:24.491279-08:00","updated_at":"2025-12-19T18:31:12.49898-08:00","closed_at":"2025-12-19T18:31:12.49898-08:00","close_reason":"test molecule - deleting"} +{"id":"bd-yck","title":"Fix checkExistingBeadsData to be worktree-aware","description":"The checkExistingBeadsData function in cmd/bd/init.go checks for .beads in the current working directory, but for worktrees it should check the main repository root instead. This prevents proper worktree compatibility.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-07T16:48:32.082776345-07:00","updated_at":"2025-12-07T16:48:32.082776345-07:00"} +{"id":"bd-ykd9","title":"Add bd doctor --fix flag to automatically repair issues","description":"Implement a --fix flag for bd doctor that can automatically repair detected issues.\n\nRequirements:\n- Add --fix flag to bd doctor command\n- Show all fixable issues and prompt for confirmation before applying fixes\n- Organize fix implementations under doctor/fix/\u003ctype_of_fix\u003e.go\n- Each fix type should have its own file (e.g., doctor/fix/hooks.go, doctor/fix/sync.go)\n- Display what will be fixed and ask user to confirm (Y/n) before proceeding\n- Support fixing issues like:\n - Missing or broken git hooks\n - Sync problems with remote\n - File permission issues\n - Any other auto-repairable issues doctor detects\n\nImplementation notes:\n- Maintain separation between detection (existing doctor code) and repair (new fix code)\n- Each fix should be idempotent and safe to run multiple times\n- Provide clear output about what was fixed\n- Log any fixes that fail with actionable error messages","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-14T18:17:48.411264-08:00","updated_at":"2025-11-14T18:17:58.88609-08:00"} +{"id":"bd-z86n","title":"Code Review: PR #551 - Persist close_reason to issues table","description":"Code review of PR #551 which fixes close_reason persistence bug.\n\n## Summary\nThe PR correctly fixes a bug where close_reason was only stored in the events table, not in the issues.close_reason column. This caused `bd show --json` to return empty close_reason.\n\n## What Was Fixed\n- āœ… CloseIssue now updates both close_reason and closed_at\n- āœ… ReOpenIssue clears both close_reason and closed_at\n- āœ… Comprehensive tests added for both storage and CLI layers\n- āœ… Clear documentation in queries.go about dual storage strategy\n\n## Quality Assessment\nāœ… Tests cover both storage layer and CLI JSON output\nāœ… Handles reopen case (clearing close_reason)\nāœ… Good comments explaining dual-storage design\nāœ… No known issues\n\n## Potential Followups\nSee linked issues for suggestions.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:06.887069-08:00","updated_at":"2025-12-14T14:25:06.887069-08:00"} +{"id":"bd-z8a6","title":"bd delete --from-file should add deleted issues to deletions manifest","description":"When using bd delete --from-file to bulk delete issues, the deleted issue IDs are not being added to the deletions.jsonl manifest.\n\nThis causes those issues to be resurrected during bd sync when git history scanning finds them in old commits.\n\nExpected: All deleted issues should be added to deletions.jsonl so they wont be reimported from git history.\n\nWorkaround: Manually add deletion records to deletions.jsonl.","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T01:48:14.099855-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-zc3","title":"Add --pinned and --no-pinned flags to bd list","description":"Add filtering flags to bd list: --pinned shows only pinned issues, --no-pinned excludes pinned issues. Default behavior shows all issues with a pin indicator.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:29.518028-08:00","updated_at":"2025-12-18T23:33:29.518028-08:00","dependencies":[{"issue_id":"bd-zc3","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.256764-08:00","created_by":"daemon"},{"issue_id":"bd-zc3","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.486361-08:00","created_by":"daemon"}]} {"id":"bd-zf5w","title":"bd mail uses git user.name for sender instead of BEADS_AGENT_NAME","description":"When sending mail via `bd mail send`, the sender field in the stored issue uses git config user.name instead of the BEADS_AGENT_NAME environment variable.\n\nReproduction:\n1. Set BEADS_AGENT_NAME=gastown-alpha\n2. Run: bd mail send mayor/ -s 'Test' -m 'Body'\n3. Check the issue.jsonl: sender is 'Steve Yegge' (git user.name) not 'gastown-alpha'\n\nExpected: The sender field should use BEADS_AGENT_NAME when set.\n\nThis breaks the mail system for multi-agent workflows where agents need to identify themselves by their role (polecat, refinery, etc.) rather than the human user's git identity.\n\nRelated: gt mail routing integration with Gas Town","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-20T21:46:33.646746-08:00","updated_at":"2025-12-20T21:46:33.646746-08:00"} -{"id":"bd-zwtq","title":"Run bd doctor at end of bd init to verify setup","description":"Run bd doctor diagnostics at end of bd init (after line 398 in init.go). If issues found, warn user immediately: 'āš  Setup incomplete. Run bd doctor --fix to complete setup.' Catches configuration problems before user encounters them in normal workflow.","status":"open","priority":1,"issue_type":"feature","created_at":"2025-11-21T23:16:09.596778-08:00","updated_at":"2025-11-21T23:16:27.781976-08:00","dependencies":[{"issue_id":"bd-zwtq","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:09.597617-08:00","created_by":"daemon"}]} +{"id":"bd-ziy5","title":"GH#409: bd init uses issues.jsonl but docs say beads.jsonl","description":"bd init creates config referencing issues.jsonl but README/docs reference beads.jsonl as canonical. Standardize naming. See GitHub issue #409.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:58.109954-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} +{"id":"bd-zwtq","title":"Run bd doctor at end of bd init to verify setup","description":"Run bd doctor diagnostics at end of bd init (after line 398 in init.go). If issues found, warn user immediately: 'āš  Setup incomplete. Run bd doctor --fix to complete setup.' Catches configuration problems before user encounters them in normal workflow.","status":"open","priority":1,"issue_type":"feature","created_at":"2025-11-21T23:16:09.596778-08:00","updated_at":"2025-11-21T23:16:27.781976-08:00","dependencies":[{"issue_id":"bd-zwtq","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:09.597617-08:00","created_by":"daemon","metadata":"{}"}]} From cecf63d1b9e544efe36c160266e339411b77d7a6 Mon Sep 17 00:00:00 2001 From: Steve Yegge Date: Sat, 20 Dec 2025 22:02:03 -0800 Subject: [PATCH 15/18] docs(scripts): add Gas Town guidance to bump-version.sh MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Learned during v0.32.1 release: running version bumps from crew clones causes git conflicts with bd sync, which commits from mayor/rig. Added note to always run releases from the rig root where beads lives. šŸ¤– Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 --- scripts/bump-version.sh | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/scripts/bump-version.sh b/scripts/bump-version.sh index e37ca759..be61cf1f 100755 --- a/scripts/bump-version.sh +++ b/scripts/bump-version.sh @@ -22,6 +22,18 @@ set -e # 6. Verify installation # # Until bd mol bond is implemented (bd-usro), use bd molecule instantiate. +# +# IMPORTANT: Run from mayor/rig to avoid git conflicts with bd sync +# ============================================================================= +# +# Gas Town agents share a beads database at mayor/rig/.beads/. The bd sync +# command commits from that clone. Running version bumps from a different +# clone (e.g., crew/dave) causes push conflicts when bd sync tries to push. +# +# Always run releases from the rig root: +# +# cd ~/gt/beads/mayor/rig && ./scripts/bump-version.sh X.Y.Z --commit --tag --push +# # ============================================================================= # Colors for output From d2956739c8d5865d6273d3df3b6aa6f6c7e2d2a4 Mon Sep 17 00:00:00 2001 From: Steve Yegge Date: Sat, 20 Dec 2025 22:35:19 -0800 Subject: [PATCH 16/18] bd sync: 2025-12-20 22:35:19 --- .beads/issues.jsonl | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/.beads/issues.jsonl b/.beads/issues.jsonl index 559854f7..8344da96 100644 --- a/.beads/issues.jsonl +++ b/.beads/issues.jsonl @@ -209,6 +209,7 @@ {"id":"bd-o4qy","title":"Improve CheckStaleness error handling","description":"## Problem\n\nCheckStaleness returns 'false' (not stale) for multiple error conditions instead of returning errors. This masks problems.\n\n**Location:** internal/autoimport/autoimport.go:253-285\n\n## Edge Cases That Return False\n\n1. **Invalid last_import_time format** (line 259-262)\n2. **No JSONL file found** (line 267-277) \n3. **JSONL stat fails** (line 279-282)\n\n## Fix\n\nReturn errors for abnormal conditions:\n\n```go\nlastImportTime, err := time.Parse(time.RFC3339, lastImportStr)\nif err != nil {\n return false, fmt.Errorf(\"corrupted last_import_time: %w\", err)\n}\n\nif jsonlPath == \"\" {\n return false, fmt.Errorf(\"no JSONL file found\")\n}\n\nstat, err := os.Stat(jsonlPath)\nif err != nil {\n return false, fmt.Errorf(\"cannot stat JSONL: %w\", err)\n}\n```\n\n## Impact\nMedium - edge cases are rare but should be handled\n\n## Effort \n30 minutes - requires updating callers in RPC server","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-11-20T20:17:27.606219-05:00","updated_at":"2025-12-17T23:13:40.536905-08:00","closed_at":"2025-12-17T19:11:12.965289-08:00","dependencies":[{"issue_id":"bd-o4qy","depends_on_id":"bd-2q6d","type":"blocks","created_at":"2025-11-20T20:18:26.81065-05:00","created_by":"stevey","metadata":"{}"}]} {"id":"bd-o55a","title":"GH#509: bd doesn't find .beads when running from nested worktrees","description":"When worktrees are nested under main repo (.worktrees/feature/), bd stops at worktree git root instead of continuing to find .beads in parent. See GitHub issue #509 for detailed fix suggestion.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:20.281591-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-o9o","title":"Exclude pinned issues from bd ready","description":"Update bd ready to exclude pinned issues. Pinned issues are context markers, not work items, and should never appear in the ready-to-work list.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:41.979073-08:00","updated_at":"2025-12-18T23:33:41.979073-08:00","dependencies":[{"issue_id":"bd-o9o","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.392931-08:00","created_by":"daemon"},{"issue_id":"bd-o9o","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.612655-08:00","created_by":"daemon"}]} +{"id":"bd-of2p","title":"Improve version bump molecule with missing steps","description":"During v0.32.1 release, discovered missing steps in the release molecule:\n\n**Missing from molecule:**\n1. Rebuild ~/go/bin/bd (only did ~/.local/bin/bd)\n2. Install beads-mcp from local source: `uv tool install --reinstall ./integrations/beads-mcp`\n3. Restart daemons with `bd daemons killall`\n4. (Optional) Publish beads-mcp to PyPI\n\n**Current molecule steps (bd-6s61):**\n1. Update CHANGELOG.md\n2. Update info.go versionChanges \n3. Run bump-version.sh\n4. Run tests and linting\n5. Update local installation\n6. Commit and push release\n7. Wait for CI\n8. Verify release artifacts\n\n**Proposed additions:**\n- After \"Update local installation\": rebuild BOTH ~/.local/bin/bd AND ~/go/bin/bd\n- Add: \"Install beads-mcp from source\" step\n- Add: \"Restart daemons\" step\n- Add: \"Verify all versions match\" step that checks all artifacts\n\n**Also learned:**\n- Must run from mayor/rig to avoid git conflicts with bd sync (already documented in bump-version.sh)","notes":"CORRECTION: npm publishing IS automated and working!\n\n**Package naming:**\n- OLD: `beads` (npm) - deprecated, stuck at 0.2.1\n- CURRENT: `@beads/bd` (npm) - scoped package, auto-published by CI\n\n**How it works:**\n- CI uses OIDC trusted publishing (no token needed)\n- Workflow: .github/workflows/release.yml ā†’ publish-npm job\n- Permissions: `id-token: write` enables GitHub OIDC\n- To install: `npm install -g @beads/bd` (not `npm install beads`)\n\n**All publishing is automated on tag push:**\n1. GitHub Release - goreleaser āœ“\n2. PyPI - publish-pypi job āœ“\n3. Homebrew - update-homebrew job āœ“\n4. npm (@beads/bd) - publish-npm job āœ“\n\n**Remaining molecule improvements (local steps only):**\n- Rebuild BOTH ~/.local/bin/bd AND ~/go/bin/bd\n- Install beads-mcp from source: `uv tool install --reinstall ./integrations/beads-mcp`\n- Restart daemons: `bd daemons killall`\n- Run from mayor/rig to avoid git conflicts with bd sync\n- Final verification step to check all local versions match","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-20T22:09:11.845787-08:00","updated_at":"2025-12-20T22:34:08.862172-08:00"} {"id":"bd-ola6","title":"Implement transaction retry logic for SQLITE_BUSY","description":"BEGIN IMMEDIATE fails immediately on SQLITE_BUSY instead of retrying with exponential backoff.\n\nLocation: internal/storage/sqlite/sqlite.go:223-225\n\nProblem:\n- Under concurrent write load, BEGIN IMMEDIATE can fail with SQLITE_BUSY\n- Current implementation fails immediately instead of retrying\n- Results in spurious failures under normal concurrent usage\n\nSolution: Implement exponential backoff retry:\n- Retry up to N times (e.g., 5)\n- Backoff: 10ms, 20ms, 40ms, 80ms, 160ms\n- Check for context cancellation between retries\n- Only retry on SQLITE_BUSY/database locked errors\n\nImpact: Spurious failures under concurrent write load\n\nEffort: 3 hours","status":"open","priority":1,"issue_type":"feature","created_at":"2025-11-16T14:51:31.247147-08:00","updated_at":"2025-11-16T14:51:31.247147-08:00"} {"id":"bd-ork0","title":"Add comments to 30+ silently ignored errors or fix them","description":"Code health review found 30+ instances of error suppression using blank identifier without explanation:\n\nGood examples (with comments):\n- merge.go: _ = gitRmCmd.Run() // Ignore errors\n- daemon_watcher.go: _ = watcher.Add(...) // Ignore error\n\nBad examples (no context):\n- create.go:213: dbPrefix, _ = store.GetConfig(ctx, \"issue_prefix\")\n- daemon_sync_branch.go: _ = daemonClient.Close()\n- migrate_hash_ids.go, version_tracking.go: _ = store.Close()\n\nFix: Add comments explaining WHY errors are ignored, or handle them properly.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:25.899372-08:00","updated_at":"2025-12-16T18:17:25.899372-08:00","dependencies":[{"issue_id":"bd-ork0","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.275843-08:00","created_by":"daemon","metadata":"{}"}]} {"id":"bd-ot0w","title":"Work on beads-tip: Fix broken Claude integration link in ...","description":"Work on beads-tip: Fix broken Claude integration link in bd doctor (GH#623). Update URL that doesn't exist. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","assignee":"beads/dementus","created_at":"2025-12-19T22:56:08.429157-08:00","updated_at":"2025-12-19T23:20:39.790305-08:00","closed_at":"2025-12-19T23:20:39.790305-08:00","close_reason":"Fixed broken Claude plugin URL in bd doctor"} @@ -300,7 +301,7 @@ {"id":"bd-whgv","title":"Merge: bd-401h","description":"branch: polecat/rictus\ntarget: main\nsource_issue: bd-401h\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:20:37.854953-08:00","updated_at":"2025-12-19T23:20:37.854953-08:00"} {"id":"bd-x1xs","title":"Work on beads-1ra: Add molecules.jsonl as separate catalo...","description":"Work on beads-1ra: Add molecules.jsonl as separate catalog file for template molecules","status":"in_progress","priority":2,"issue_type":"task","assignee":"beads/polecat-01","created_at":"2025-12-19T20:17:44.840032-08:00","updated_at":"2025-12-19T20:17:44.905944-08:00"} {"id":"bd-x36g","title":"Thread Test 2","description":"Testing direct mode","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:16.470631-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} -{"id":"bd-x3hi","title":"Support redirect files in .beads/ directory","description":"Gas Town creates polecat worktrees with .beads/redirect files that point to a shared beads database. The bd CLI should:\n\n1. When finding a .beads/ directory, check if it contains a 'redirect' file\n2. If redirect exists, read the relative path and use that as the beads directory\n3. This allows multiple git worktrees to share a single beads database\n\nExample:\n- polecats/alpha/.beads/redirect contains '../../mayor/rig/.beads'\n- bd commands from alpha should use mayor/rig/.beads\n\nCurrently bd ignores redirect files and either uses the local .beads/ or walks up to find a parent .beads/.\n\nRelated: gt-nriy (test message that can't be retrieved due to missing redirect support)","status":"open","priority":1,"issue_type":"feature","created_at":"2025-12-20T21:46:23.415172-08:00","updated_at":"2025-12-20T21:46:23.415172-08:00"} +{"id":"bd-x3hi","title":"Support redirect files in .beads/ directory","description":"Gas Town creates polecat worktrees with .beads/redirect files that point to a shared beads database. The bd CLI should:\n\n1. When finding a .beads/ directory, check if it contains a 'redirect' file\n2. If redirect exists, read the relative path and use that as the beads directory\n3. This allows multiple git worktrees to share a single beads database\n\nExample:\n- polecats/alpha/.beads/redirect contains '../../mayor/rig/.beads'\n- bd commands from alpha should use mayor/rig/.beads\n\nCurrently bd ignores redirect files and either uses the local .beads/ or walks up to find a parent .beads/.\n\nRelated: gt-nriy (test message that can't be retrieved due to missing redirect support)","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-12-20T21:46:23.415172-08:00","updated_at":"2025-12-20T21:59:25.759664-08:00","closed_at":"2025-12-20T21:59:25.759664-08:00","close_reason":"Not applicable - filed against stale bd v0.30.6"} {"id":"bd-x3j8","title":"Update info.go versionChanges","description":"Add 0.32.1 entry to versionChanges map in cmd/bd/info.go","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:17.344841-08:00","updated_at":"2025-12-20T21:54:31.906761-08:00","closed_at":"2025-12-20T21:54:31.906761-08:00","close_reason":"Added 0.32.1 to versionChanges","dependencies":[{"issue_id":"bd-x3j8","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:17.346736-08:00","created_by":"daemon"},{"issue_id":"bd-x3j8","depends_on_id":"bd-rgd7","type":"blocks","created_at":"2025-12-20T21:53:29.62309-08:00","created_by":"daemon"}]} {"id":"bd-xctp","title":"GH#519: bd sync fails when sync.branch is currently checked-out branch","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:06:05.319281-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-xj2e","title":"GH#522: Add --type flag to bd update command","description":"Add --type flag to bd update for changing issue type (task/epic/bug/feature). Storage layer already supports it. See GitHub issue #522.","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T01:03:12.506583-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} @@ -313,6 +314,6 @@ {"id":"bd-z86n","title":"Code Review: PR #551 - Persist close_reason to issues table","description":"Code review of PR #551 which fixes close_reason persistence bug.\n\n## Summary\nThe PR correctly fixes a bug where close_reason was only stored in the events table, not in the issues.close_reason column. This caused `bd show --json` to return empty close_reason.\n\n## What Was Fixed\n- āœ… CloseIssue now updates both close_reason and closed_at\n- āœ… ReOpenIssue clears both close_reason and closed_at\n- āœ… Comprehensive tests added for both storage and CLI layers\n- āœ… Clear documentation in queries.go about dual storage strategy\n\n## Quality Assessment\nāœ… Tests cover both storage layer and CLI JSON output\nāœ… Handles reopen case (clearing close_reason)\nāœ… Good comments explaining dual-storage design\nāœ… No known issues\n\n## Potential Followups\nSee linked issues for suggestions.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:06.887069-08:00","updated_at":"2025-12-14T14:25:06.887069-08:00"} {"id":"bd-z8a6","title":"bd delete --from-file should add deleted issues to deletions manifest","description":"When using bd delete --from-file to bulk delete issues, the deleted issue IDs are not being added to the deletions.jsonl manifest.\n\nThis causes those issues to be resurrected during bd sync when git history scanning finds them in old commits.\n\nExpected: All deleted issues should be added to deletions.jsonl so they wont be reimported from git history.\n\nWorkaround: Manually add deletion records to deletions.jsonl.","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T01:48:14.099855-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-zc3","title":"Add --pinned and --no-pinned flags to bd list","description":"Add filtering flags to bd list: --pinned shows only pinned issues, --no-pinned excludes pinned issues. Default behavior shows all issues with a pin indicator.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:29.518028-08:00","updated_at":"2025-12-18T23:33:29.518028-08:00","dependencies":[{"issue_id":"bd-zc3","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.256764-08:00","created_by":"daemon"},{"issue_id":"bd-zc3","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.486361-08:00","created_by":"daemon"}]} -{"id":"bd-zf5w","title":"bd mail uses git user.name for sender instead of BEADS_AGENT_NAME","description":"When sending mail via `bd mail send`, the sender field in the stored issue uses git config user.name instead of the BEADS_AGENT_NAME environment variable.\n\nReproduction:\n1. Set BEADS_AGENT_NAME=gastown-alpha\n2. Run: bd mail send mayor/ -s 'Test' -m 'Body'\n3. Check the issue.jsonl: sender is 'Steve Yegge' (git user.name) not 'gastown-alpha'\n\nExpected: The sender field should use BEADS_AGENT_NAME when set.\n\nThis breaks the mail system for multi-agent workflows where agents need to identify themselves by their role (polecat, refinery, etc.) rather than the human user's git identity.\n\nRelated: gt mail routing integration with Gas Town","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-20T21:46:33.646746-08:00","updated_at":"2025-12-20T21:46:33.646746-08:00"} +{"id":"bd-zf5w","title":"bd mail uses git user.name for sender instead of BEADS_AGENT_NAME","description":"When sending mail via `bd mail send`, the sender field in the stored issue uses git config user.name instead of the BEADS_AGENT_NAME environment variable.\n\nReproduction:\n1. Set BEADS_AGENT_NAME=gastown-alpha\n2. Run: bd mail send mayor/ -s 'Test' -m 'Body'\n3. Check the issue.jsonl: sender is 'Steve Yegge' (git user.name) not 'gastown-alpha'\n\nExpected: The sender field should use BEADS_AGENT_NAME when set.\n\nThis breaks the mail system for multi-agent workflows where agents need to identify themselves by their role (polecat, refinery, etc.) rather than the human user's git identity.\n\nRelated: gt mail routing integration with Gas Town","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-20T21:46:33.646746-08:00","updated_at":"2025-12-20T21:59:25.771325-08:00","closed_at":"2025-12-20T21:59:25.771325-08:00","close_reason":"Not applicable - filed against stale bd v0.30.6"} {"id":"bd-ziy5","title":"GH#409: bd init uses issues.jsonl but docs say beads.jsonl","description":"bd init creates config referencing issues.jsonl but README/docs reference beads.jsonl as canonical. Standardize naming. See GitHub issue #409.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:58.109954-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-zwtq","title":"Run bd doctor at end of bd init to verify setup","description":"Run bd doctor diagnostics at end of bd init (after line 398 in init.go). If issues found, warn user immediately: 'āš  Setup incomplete. Run bd doctor --fix to complete setup.' Catches configuration problems before user encounters them in normal workflow.","status":"open","priority":1,"issue_type":"feature","created_at":"2025-11-21T23:16:09.596778-08:00","updated_at":"2025-11-21T23:16:27.781976-08:00","dependencies":[{"issue_id":"bd-zwtq","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:09.597617-08:00","created_by":"daemon","metadata":"{}"}]} From 22f4e0d6fafc2f5f5d10ea99608e12ab4fc2f1c8 Mon Sep 17 00:00:00 2001 From: Steve Yegge Date: Sat, 20 Dec 2025 22:35:59 -0800 Subject: [PATCH 17/18] bd sync: 2025-12-20 22:35:59 --- .beads/issues.jsonl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.beads/issues.jsonl b/.beads/issues.jsonl index 8344da96..8f754d45 100644 --- a/.beads/issues.jsonl +++ b/.beads/issues.jsonl @@ -209,7 +209,7 @@ {"id":"bd-o4qy","title":"Improve CheckStaleness error handling","description":"## Problem\n\nCheckStaleness returns 'false' (not stale) for multiple error conditions instead of returning errors. This masks problems.\n\n**Location:** internal/autoimport/autoimport.go:253-285\n\n## Edge Cases That Return False\n\n1. **Invalid last_import_time format** (line 259-262)\n2. **No JSONL file found** (line 267-277) \n3. **JSONL stat fails** (line 279-282)\n\n## Fix\n\nReturn errors for abnormal conditions:\n\n```go\nlastImportTime, err := time.Parse(time.RFC3339, lastImportStr)\nif err != nil {\n return false, fmt.Errorf(\"corrupted last_import_time: %w\", err)\n}\n\nif jsonlPath == \"\" {\n return false, fmt.Errorf(\"no JSONL file found\")\n}\n\nstat, err := os.Stat(jsonlPath)\nif err != nil {\n return false, fmt.Errorf(\"cannot stat JSONL: %w\", err)\n}\n```\n\n## Impact\nMedium - edge cases are rare but should be handled\n\n## Effort \n30 minutes - requires updating callers in RPC server","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-11-20T20:17:27.606219-05:00","updated_at":"2025-12-17T23:13:40.536905-08:00","closed_at":"2025-12-17T19:11:12.965289-08:00","dependencies":[{"issue_id":"bd-o4qy","depends_on_id":"bd-2q6d","type":"blocks","created_at":"2025-11-20T20:18:26.81065-05:00","created_by":"stevey","metadata":"{}"}]} {"id":"bd-o55a","title":"GH#509: bd doesn't find .beads when running from nested worktrees","description":"When worktrees are nested under main repo (.worktrees/feature/), bd stops at worktree git root instead of continuing to find .beads in parent. See GitHub issue #509 for detailed fix suggestion.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:20.281591-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-o9o","title":"Exclude pinned issues from bd ready","description":"Update bd ready to exclude pinned issues. Pinned issues are context markers, not work items, and should never appear in the ready-to-work list.","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:41.979073-08:00","updated_at":"2025-12-18T23:33:41.979073-08:00","dependencies":[{"issue_id":"bd-o9o","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.392931-08:00","created_by":"daemon"},{"issue_id":"bd-o9o","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.612655-08:00","created_by":"daemon"}]} -{"id":"bd-of2p","title":"Improve version bump molecule with missing steps","description":"During v0.32.1 release, discovered missing steps in the release molecule:\n\n**Missing from molecule:**\n1. Rebuild ~/go/bin/bd (only did ~/.local/bin/bd)\n2. Install beads-mcp from local source: `uv tool install --reinstall ./integrations/beads-mcp`\n3. Restart daemons with `bd daemons killall`\n4. (Optional) Publish beads-mcp to PyPI\n\n**Current molecule steps (bd-6s61):**\n1. Update CHANGELOG.md\n2. Update info.go versionChanges \n3. Run bump-version.sh\n4. Run tests and linting\n5. Update local installation\n6. Commit and push release\n7. Wait for CI\n8. Verify release artifacts\n\n**Proposed additions:**\n- After \"Update local installation\": rebuild BOTH ~/.local/bin/bd AND ~/go/bin/bd\n- Add: \"Install beads-mcp from source\" step\n- Add: \"Restart daemons\" step\n- Add: \"Verify all versions match\" step that checks all artifacts\n\n**Also learned:**\n- Must run from mayor/rig to avoid git conflicts with bd sync (already documented in bump-version.sh)","notes":"CORRECTION: npm publishing IS automated and working!\n\n**Package naming:**\n- OLD: `beads` (npm) - deprecated, stuck at 0.2.1\n- CURRENT: `@beads/bd` (npm) - scoped package, auto-published by CI\n\n**How it works:**\n- CI uses OIDC trusted publishing (no token needed)\n- Workflow: .github/workflows/release.yml ā†’ publish-npm job\n- Permissions: `id-token: write` enables GitHub OIDC\n- To install: `npm install -g @beads/bd` (not `npm install beads`)\n\n**All publishing is automated on tag push:**\n1. GitHub Release - goreleaser āœ“\n2. PyPI - publish-pypi job āœ“\n3. Homebrew - update-homebrew job āœ“\n4. npm (@beads/bd) - publish-npm job āœ“\n\n**Remaining molecule improvements (local steps only):**\n- Rebuild BOTH ~/.local/bin/bd AND ~/go/bin/bd\n- Install beads-mcp from source: `uv tool install --reinstall ./integrations/beads-mcp`\n- Restart daemons: `bd daemons killall`\n- Run from mayor/rig to avoid git conflicts with bd sync\n- Final verification step to check all local versions match","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-20T22:09:11.845787-08:00","updated_at":"2025-12-20T22:34:08.862172-08:00"} +{"id":"bd-of2p","title":"Improve version bump molecule with missing steps","description":"During v0.32.1 release, discovered missing steps in the release molecule:\n\n**Missing from molecule:**\n1. Rebuild ~/go/bin/bd (only did ~/.local/bin/bd)\n2. Install beads-mcp from local source: `uv tool install --reinstall ./integrations/beads-mcp`\n3. Restart daemons with `bd daemons killall`\n4. (Optional) Publish beads-mcp to PyPI\n\n**Current molecule steps (bd-6s61):**\n1. Update CHANGELOG.md\n2. Update info.go versionChanges \n3. Run bump-version.sh\n4. Run tests and linting\n5. Update local installation\n6. Commit and push release\n7. Wait for CI\n8. Verify release artifacts\n\n**Proposed additions:**\n- After \"Update local installation\": rebuild BOTH ~/.local/bin/bd AND ~/go/bin/bd\n- Add: \"Install beads-mcp from source\" step\n- Add: \"Restart daemons\" step\n- Add: \"Verify all versions match\" step that checks all artifacts\n\n**Also learned:**\n- Must run from mayor/rig to avoid git conflicts with bd sync (already documented in bump-version.sh)","notes":"CORRECTION: npm publishing IS automated and working!\n\n**Package naming:**\n- OLD: `beads` (npm) - deprecated, stuck at 0.2.1\n- CURRENT: `@beads/bd` (npm) - scoped package, auto-published by CI\n\n**How it works:**\n- CI uses OIDC trusted publishing (no token needed)\n- Workflow: .github/workflows/release.yml ā†’ publish-npm job\n- Permissions: `id-token: write` enables GitHub OIDC\n- To install: `npm install -g @beads/bd` (not `npm install beads`)\n\n**All publishing is automated on tag push:**\n1. GitHub Release - goreleaser āœ“\n2. PyPI - publish-pypi job āœ“\n3. Homebrew - update-homebrew job āœ“\n4. npm (@beads/bd) - publish-npm job āœ“\n\n**Remaining molecule improvements (local steps only):**\n- Rebuild BOTH ~/.local/bin/bd AND ~/go/bin/bd\n- Install beads-mcp from source: `uv tool install --reinstall ./integrations/beads-mcp`\n- Restart daemons: `bd daemons killall`\n- Run from mayor/rig to avoid git conflicts with bd sync\n- Final verification step to check all local versions match","status":"in_progress","priority":2,"issue_type":"task","assignee":"beads/dave","created_at":"2025-12-20T22:09:11.845787-08:00","updated_at":"2025-12-20T22:35:53.687587-08:00"} {"id":"bd-ola6","title":"Implement transaction retry logic for SQLITE_BUSY","description":"BEGIN IMMEDIATE fails immediately on SQLITE_BUSY instead of retrying with exponential backoff.\n\nLocation: internal/storage/sqlite/sqlite.go:223-225\n\nProblem:\n- Under concurrent write load, BEGIN IMMEDIATE can fail with SQLITE_BUSY\n- Current implementation fails immediately instead of retrying\n- Results in spurious failures under normal concurrent usage\n\nSolution: Implement exponential backoff retry:\n- Retry up to N times (e.g., 5)\n- Backoff: 10ms, 20ms, 40ms, 80ms, 160ms\n- Check for context cancellation between retries\n- Only retry on SQLITE_BUSY/database locked errors\n\nImpact: Spurious failures under concurrent write load\n\nEffort: 3 hours","status":"open","priority":1,"issue_type":"feature","created_at":"2025-11-16T14:51:31.247147-08:00","updated_at":"2025-11-16T14:51:31.247147-08:00"} {"id":"bd-ork0","title":"Add comments to 30+ silently ignored errors or fix them","description":"Code health review found 30+ instances of error suppression using blank identifier without explanation:\n\nGood examples (with comments):\n- merge.go: _ = gitRmCmd.Run() // Ignore errors\n- daemon_watcher.go: _ = watcher.Add(...) // Ignore error\n\nBad examples (no context):\n- create.go:213: dbPrefix, _ = store.GetConfig(ctx, \"issue_prefix\")\n- daemon_sync_branch.go: _ = daemonClient.Close()\n- migrate_hash_ids.go, version_tracking.go: _ = store.Close()\n\nFix: Add comments explaining WHY errors are ignored, or handle them properly.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-16T18:17:25.899372-08:00","updated_at":"2025-12-16T18:17:25.899372-08:00","dependencies":[{"issue_id":"bd-ork0","depends_on_id":"bd-tggf","type":"blocks","created_at":"2025-12-16T18:19:06.275843-08:00","created_by":"daemon","metadata":"{}"}]} {"id":"bd-ot0w","title":"Work on beads-tip: Fix broken Claude integration link in ...","description":"Work on beads-tip: Fix broken Claude integration link in bd doctor (GH#623). Update URL that doesn't exist. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","assignee":"beads/dementus","created_at":"2025-12-19T22:56:08.429157-08:00","updated_at":"2025-12-19T23:20:39.790305-08:00","closed_at":"2025-12-19T23:20:39.790305-08:00","close_reason":"Fixed broken Claude plugin URL in bd doctor"} From ee255c215a6ef358c12c0356898c3bd702755bd9 Mon Sep 17 00:00:00 2001 From: Steve Yegge Date: Sat, 20 Dec 2025 23:22:54 -0800 Subject: [PATCH 18/18] bd sync: 2025-12-20 23:22:54 --- .beads/issues.jsonl | 21 +++++++++++---------- 1 file changed, 11 insertions(+), 10 deletions(-) diff --git a/.beads/issues.jsonl b/.beads/issues.jsonl index 8f754d45..e212dacb 100644 --- a/.beads/issues.jsonl +++ b/.beads/issues.jsonl @@ -26,7 +26,7 @@ {"id":"bd-3852","title":"Add orphan detection migration","description":"Create migration to detect orphaned children in existing databases. Query: SELECT id FROM issues WHERE id LIKE '%.%' AND substr(id, 1, instr(id || '.', '.') - 1) NOT IN (SELECT id FROM issues). Log results, let user decide action (delete orphans or convert to top-level).","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-04T12:32:30.727044-08:00","updated_at":"2025-11-04T12:32:30.727044-08:00"} {"id":"bd-3ggb","title":"Rebuild local binary","description":"Build and verify: go build -o bd ./cmd/bd \u0026\u0026 ./bd version","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:03.101428-08:00","updated_at":"2025-12-18T22:46:40.955673-08:00","closed_at":"2025-12-18T22:46:40.955673-08:00","dependencies":[{"issue_id":"bd-3ggb","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.748289-08:00","created_by":"daemon"},{"issue_id":"bd-3ggb","depends_on_id":"bd-4y4g","type":"blocks","created_at":"2025-12-18T22:43:20.950376-08:00","created_by":"daemon"}]} {"id":"bd-3sz0","title":"Auto-repair stale merge driver configs with invalid placeholders","description":"Old bd versions (\u003c0.24.0) installed merge driver with invalid placeholders %L %R instead of %A %B. Add detection to bd doctor --fix: check if git config merge.beads.driver contains %L or %R, auto-repair to 'bd merge %A %O %A %B'. One-time migration for users who initialized with old versions.","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-21T23:16:10.762808-08:00","updated_at":"2025-11-21T23:16:28.892655-08:00","dependencies":[{"issue_id":"bd-3sz0","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:10.763612-08:00","created_by":"daemon","metadata":"{}"}]} -{"id":"bd-3x9o","title":"Merge: bd-by0d","description":"branch: polecat/furiosa\ntarget: main\nsource_issue: bd-by0d\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:21:26.817906-08:00","updated_at":"2025-12-19T23:21:26.817906-08:00"} +{"id":"bd-3x9o","title":"Merge: bd-by0d","description":"branch: polecat/furiosa\ntarget: main\nsource_issue: bd-by0d\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:21:26.817906-08:00","updated_at":"2025-12-20T23:17:26.998785-08:00","closed_at":"2025-12-20T23:17:26.998785-08:00","close_reason":"Branches nuked, MRs obsolete"} {"id":"bd-401h","title":"Work on beads-7jl: Fix Windows installer file locking iss...","description":"Work on beads-7jl: Fix Windows installer file locking issue (GH#652). Close file handle before extraction in postinstall.js. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","assignee":"beads/rictus","created_at":"2025-12-19T22:55:57.873767-08:00","updated_at":"2025-12-19T23:20:05.747664-08:00","closed_at":"2025-12-19T23:20:05.747664-08:00","close_reason":"Fixed file handle closure race condition in postinstall.js"} {"id":"bd-411u","title":"Document BEADS_DIR pattern for multi-agent workspaces (Gas Town)","description":"Gas Town and similar multi-agent systems need to configure separate beads databases per workspace/rig, distinct from any project-level beads.\n\n## Use Case\n\nIn Gas Town:\n- Each 'rig' (managed project) has multiple agents (polecats, refinery, witness)\n- All agents in a rig should share a single beads database at the rig level\n- This should be separate from any .beads/ the project itself uses\n- The BEADS_DIR env var enables this\n\n## Documentation Needed\n\n1. Add a section to docs explaining BEADS_DIR for multi-agent setups\n2. Example: setting BEADS_DIR in agent startup scripts/hooks\n3. Clarify interaction with project-level .beads/ (BEADS_DIR takes precedence)\n\n## Current Support\n\nAlready implemented in internal/beads/beads.go:FindDatabasePath():\n- BEADS_DIR env var is checked first (preferred)\n- BEADS_DB env var still supported (deprecated)\n- Falls back to .beads/ search in tree\n\nJust needs documentation for the multi-agent workspace pattern.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-15T22:08:22.158027-08:00","updated_at":"2025-12-15T22:08:22.158027-08:00"} {"id":"bd-47tn","title":"Add bd daemon --stop-all command to kill all daemon processes","description":"Currently there's no easy way to stop all running bd daemon processes. Users must resort to pkill -f 'bd daemon' or similar shell commands.\n\nAdd a --stop-all flag to bd daemon that:\n1. Finds all running bd daemon processes (not just the current repo's daemon)\n2. Gracefully stops them all\n3. Reports how many were stopped\n\nThis is useful when:\n- Multiple daemons are running and causing race conditions\n- User wants a clean slate before running bd sync\n- Debugging daemon-related issues","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-13T06:34:45.080633-08:00","updated_at":"2025-12-16T01:14:49.501989-08:00","closed_at":"2025-12-14T17:33:03.057089-08:00"} @@ -38,7 +38,7 @@ {"id":"bd-4q8","title":"bd cleanup --hard should skip tombstone creation for true permanent deletion","description":"## Problem\n\nWhen using bd cleanup --hard --older-than N --force, the command:\n1. Deletes closed issues older than N days (converting them to tombstones with NOW timestamp)\n2. Then tries to prune tombstones older than N days (finds none because they were just created)\n\nThis leaves the database bloated with fresh tombstones that will not be pruned.\n\n## Expected Behavior\n\nIn --hard mode, the deletion should be permanent without creating tombstones, since the user explicitly requested bypassing sync safety.\n\n## Workaround\n\nManually delete from database: sqlite3 .beads/beads.db 'DELETE FROM issues WHERE status=tombstone'\n\n## Fix Options\n\n1. In --hard mode, use a different delete path that does not create tombstones\n2. After deleting, immediately prune the just-created tombstones regardless of age\n3. Pass a skip_tombstone flag to the delete operation\n\nOption 1 is cleanest - --hard should mean permanent delete without tombstone.","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T01:33:36.580657-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-4qfb","title":"Improve bd doctor output formatting for better readability","description":"The current bd doctor output is a wall of text that's hard to process. Consider improvements like:\n- Grouping related checks into collapsible sections\n- Using color/bold for section headers\n- Showing only failures/warnings by default with --verbose for full output\n- Better visual hierarchy between major sections\n- Summary line at top (e.g., '24 checks passed, 0 warnings, 0 errors')","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-13T09:29:27.557578+11:00","updated_at":"2025-12-13T09:29:27.557578+11:00"} {"id":"bd-4ri","title":"Fix TestFallbackToDirectModeEnablesFlush deadlock causing 10min test timeout","description":"## Problem\n\nTestFallbackToDirectModeEnablesFlush in direct_mode_test.go deadlocks for 9m59s before timing out, causing the entire test suite to take 10+ minutes instead of \u003c10 seconds.\n\n## Root Cause\n\nDatabase lock contention between test cleanup and flushToJSONL():\n- Test cleanup (line 36) tries to close DB via defer\n- flushToJSONL() (line 132) is still accessing DB\n- Results in deadlock: database/sql.(*DB).Close() waits for mutex while GetJSONLFileHash() holds it\n\n## Stack Trace Evidence\n\n```\ngoroutine 512 [sync.Mutex.Lock, 9 minutes]:\ndatabase/sql.(*DB).Close(0x14000643790)\n .../database/sql/sql.go:927 +0x84\ngithub.com/steveyegge/beads/cmd/bd.TestFallbackToDirectModeEnablesFlush.func1()\n .../direct_mode_test.go:36 +0xf4\n\nWhile goroutine running flushToJSONL() holds DB connection via GetJSONLFileHash()\n```\n\n## Impact\n\n- Test suite: 10+ minutes ā†’ should be \u003c10 seconds\n- ALL other tests pass in ~4 seconds\n- This ONE test accounts for 99.9% of test runtime\n\n## Related\n\nThis is the EXACT same issue documented in MAIN_TEST_REFACTOR_NOTES.md for why main_test.go refactoring was deferred - global state manipulation + DB cleanup = deadlock.\n\n## Fix Approaches\n\n1. **Add proper cleanup sequencing** - stop flush goroutines BEFORE closing DB\n2. **Use test-specific DB lifecycle** - ensure flush completes before cleanup\n3. **Mock the flush mechanism** - avoid real DB for testing this code path \n4. **Add explicit timeout handling** - fail fast with clear error instead of hanging\n\n## Files\n\n- cmd/bd/direct_mode_test.go:36-132\n- cmd/bd/autoflush.go:353 (validateJSONLIntegrity)\n- cmd/bd/autoflush.go:508 (flushToJSONLWithState)\n\n## Acceptance\n\n- Test passes without timeout\n- Test suite completes in \u003c10 seconds\n- No deadlock between cleanup and flush operations","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-21T20:09:00.794372-05:00","updated_at":"2025-12-17T23:13:40.533279-08:00","closed_at":"2025-12-17T17:25:07.626617-08:00"} -{"id":"bd-4sfl","title":"Merge: bd-14ie","description":"branch: polecat/toast\ntarget: main\nsource_issue: bd-14ie\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:23:37.360782-08:00","updated_at":"2025-12-19T23:23:37.360782-08:00"} +{"id":"bd-4sfl","title":"Merge: bd-14ie","description":"branch: polecat/toast\ntarget: main\nsource_issue: bd-14ie\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:23:37.360782-08:00","updated_at":"2025-12-20T23:17:26.997276-08:00","closed_at":"2025-12-20T23:17:26.997276-08:00","close_reason":"Branches nuked, MRs obsolete"} {"id":"bd-4uoc","title":"Code Review Followup Summary: PR #481 + PR #551","description":"## Merged PRs Summary\n\n### PR #551: Persist close_reason to issues table\n- āœ… Merged successfully\n- āœ… Bug fix: close_reason now persisted in database column (not just events table)\n- āœ… Comprehensive test coverage added\n- āœ… Handles reopen case (clearing close_reason)\n\n**Followup Issues Filed:**\n- bd-lxzx: Document close_reason in JSONL export format\n- bd-077e: Update CLI documentation for close_reason field\n\n---\n\n### PR #481: Context Engineering Optimizations (80-90% context reduction)\n- āœ… Merged successfully \n- āœ… Lazy tool discovery: discover_tools() + get_tool_info()\n- āœ… Minimal issue models: IssueMinimal (~80% smaller than full Issue)\n- āœ… Result compaction: Auto-compacts results \u003e20 items\n- āœ… All 28 tests passing\n- āš ļø Breaking change: ready() and list() return type changed\n\n**Followup Issues Filed:**\n- bd-b318: Add integration tests for CompactedResult\n- bd-4u2b: Make compaction settings configurable (THRESHOLD, PREVIEW_COUNT)\n- bd-2kf8: Document CompactedResult response format in CONTEXT_ENGINEERING.md\n- bd-pdr2: Document backwards compatibility considerations\n\n---\n\n## Overall Assessment\n\nBoth PRs are production-ready with solid implementations. All critical functionality works and tests pass. Followup issues focus on:\n1. Documentation improvements (5 issues)\n2. Integration test coverage (1 issue)\n3. Configuration flexibility (1 issue)\n4. Backwards compatibility guidance (1 issue)\n\nNo critical bugs or design issues found.\n\n## Review Completed By\nCode review process completed. Issues auto-created for tracking improvements.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:59.214886-08:00","updated_at":"2025-12-14T14:25:59.214886-08:00","dependencies":[{"issue_id":"bd-4uoc","depends_on_id":"bd-otf4","type":"discovered-from","created_at":"2025-12-14T14:25:59.216884-08:00","created_by":"stevey","metadata":"{}"},{"issue_id":"bd-4uoc","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:59.217296-08:00","created_by":"stevey","metadata":"{}"}]} {"id":"bd-4y4g","title":"Bump version in all files","description":"Run ./scripts/bump-version.sh {{version}} to update 10 version files. Then run with --commit after info.go is updated.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:01.859728-08:00","updated_at":"2025-12-18T22:46:24.537336-08:00","closed_at":"2025-12-18T22:46:24.537336-08:00","dependencies":[{"issue_id":"bd-4y4g","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.623724-08:00","created_by":"daemon"},{"issue_id":"bd-4y4g","depends_on_id":"bd-8v2","type":"blocks","created_at":"2025-12-18T22:43:20.823329-08:00","created_by":"daemon"}]} {"id":"bd-56x","title":"Review PR #514: fix plugin install docs","description":"Review and merge PR #514 from aspiers. This PR fixes incorrect docs for installing Claude Code plugin from source in docs/PLUGIN.md. Clarifies shell vs Claude Code commands and fixes the . vs ./beads argument issue. URL: https://github.com/anthropics/beads/pull/514","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-13T08:15:16.865354+11:00","updated_at":"2025-12-13T07:07:19.729213-08:00","closed_at":"2025-12-13T07:07:19.729213-08:00"} @@ -64,7 +64,7 @@ {"id":"bd-7tuu","title":"Commit and push release","description":"git add -A \u0026\u0026 git commit \u0026\u0026 git push to trigger CI","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:02.053382-08:00","updated_at":"2025-12-20T01:23:52.484043-08:00","closed_at":"2025-12-20T01:23:52.484043-08:00","close_reason":"Superseded by 0.30.7 release - already committed and pushed","dependencies":[{"issue_id":"bd-7tuu","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.021087-08:00","created_by":"daemon"},{"issue_id":"bd-7tuu","depends_on_id":"bd-hw3w","type":"blocks","created_at":"2025-12-19T22:56:23.291591-08:00","created_by":"daemon"}]} {"id":"bd-7yg","title":"Git merge driver uses invalid placeholders (%L, %R instead of %A, %B)","description":"## Problem\n\nThe beads git merge driver is configured with invalid Git placeholders:\n\n```\ngit config merge.beads.driver \"bd merge %A %O %L %R\"\n```\n\nGit doesn't recognize `%L` or `%R` as valid merge driver placeholders. The valid placeholders are:\n- `%O` = base (common ancestor)\n- `%A` = current version (ours)\n- `%B` = other version (theirs)\n\n## Impact\n\n- Affects ALL users when they have `.beads/beads.jsonl` merge conflicts\n- Automatic JSONL merge fails with error: \"error reading left file: failed to open file: open 7: no such file or directory\"\n- Users must manually resolve conflicts instead of getting automatic merge\n\n## Root Cause\n\nThe `bd init` command (or wherever the merge driver is configured) is using non-standard placeholders. When Git encounters `%L` and `%R`, it either passes them literally or interprets them incorrectly.\n\n## Fix\n\nUpdate the merge driver configuration to:\n```\ngit config merge.beads.driver \"bd merge %A %O %A %B\"\n```\n\nWhere:\n- 1st `%A` = output file (current file, will be overwritten)\n- `%O` = base (common ancestor)\n- 2nd `%A` = left/current version\n- `%B` = right/other version\n\n## Action Items\n\n1. Fix `bd init` (or equivalent setup command) to use correct placeholders\n2. Add migration/warning for existing users with misconfigured merge driver\n3. Update documentation with correct merge driver setup\n4. Consider adding validation when `bd init` is run","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-21T19:51:55.747608-05:00","updated_at":"2025-12-17T23:13:40.532368-08:00","closed_at":"2025-12-17T17:24:52.678668-08:00"} {"id":"bd-89f89fc0","title":"Remove unreachable RPC methods","description":"Several RPC server and client methods are unreachable and should be removed:\n\nServer methods (internal/rpc/server.go):\n- `Server.GetLastImportTime` (line 2116)\n- `Server.SetLastImportTime` (line 2123)\n- `Server.findJSONLPath` (line 2255)\n\nClient methods (internal/rpc/client.go):\n- `Client.Import` (line 311) - RPC import not used (daemon uses autoimport)\n\nEvidence:\n```bash\ngo run golang.org/x/tools/cmd/deadcode@latest -test ./...\n```\n\nImpact: Removes ~80 LOC of unused RPC code","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-28T16:20:02.432202-07:00","updated_at":"2025-12-17T22:58:34.564401-08:00","closed_at":"2025-12-17T22:58:34.564401-08:00","close_reason":"Closed"} -{"id":"bd-8e0q","title":"Merge: beads-ocs","description":"branch: polecat/valkyrie\ntarget: main\nsource_issue: beads-ocs\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:24:45.281478-08:00","updated_at":"2025-12-19T23:24:45.281478-08:00"} +{"id":"bd-8e0q","title":"Merge: beads-ocs","description":"branch: polecat/valkyrie\ntarget: main\nsource_issue: beads-ocs\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:24:45.281478-08:00","updated_at":"2025-12-20T23:17:26.995706-08:00","closed_at":"2025-12-20T23:17:26.995706-08:00","close_reason":"Branches nuked, MRs obsolete"} {"id":"bd-8fgn","title":"test hash length","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T13:49:32.113843-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-8g8","title":"Fix G304 potential file inclusion in cmd/bd/tips.go:259","description":"Linting issue: G304: Potential file inclusion via variable (gosec) at cmd/bd/tips.go:259:18. Error: if data, err := os.ReadFile(settingsPath); err == nil {","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:34:57.189730843-07:00","updated_at":"2025-12-17T23:13:40.534569-08:00","closed_at":"2025-12-17T16:46:11.029837-08:00"} {"id":"bd-8hy","title":"Kill running daemons","description":"Stop all bd daemons before release:\n\n```bash\npkill -f 'bd.*daemon' || true\nsleep 1\npgrep -lf 'bd.*daemon' # Should show nothing\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:58.255478-08:00","updated_at":"2025-12-18T22:43:55.394966-08:00","closed_at":"2025-12-18T22:43:55.394966-08:00","dependencies":[{"issue_id":"bd-8hy","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.23168-08:00","created_by":"daemon"}]} @@ -143,7 +143,7 @@ {"id":"bd-elqd","title":"Systematic bd sync stability investigation","description":"## Context\n\nbd sync has chronic instability issues that have persisted since inception:\n- issues.jsonl is always dirty after push\n- bd sync often creates messes requiring manual cleanup\n- Problems escalating despite accumulated bug fixes\n- Workarounds are getting increasingly draconian\n\n## Goal\n\nSystematically observe and diagnose bd sync failures rather than applying band-aid fixes.\n\n## Approach\n\n1. Start fresh session with latest binary (all fixes applied)\n2. Run bd sync and carefully observe what happens\n3. Document exact sequence of events when things go wrong\n4. File specific issues for each discrete problem identified\n5. Track the root causes, not just symptoms\n\n## Test Environment\n\n- Fresh clone or clean state\n- Latest bd binary with all bug fixes\n- Monitor both local and remote JSONL state\n- Check for timing issues, race conditions, merge conflicts\n\n## Success Criteria\n\n- Identify root causes of sync instability\n- Create actionable issues for each problem\n- Eventually achieve stable bd sync (no manual intervention needed)","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-16T22:57:25.35289-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-eyrh","title":"šŸ¤ HANDOFF: Review remaining beads PRs","description":"## Current State\nJust merged PR #653 (doctor refactor) and added tests to restore coverage.\n\n## Remaining Open PRs to Review\nRun `gh pr list --repo steveyegge/beads` to see current list. As of handoff:\n\n1. #655 - feat: Linear Integration (jblwilliams)\n2. #651 - feat(audit): agent audit trail (dchichkov)\n3. #648 - Stop init creating redundant @AGENTS.md (maphew)\n4. #646 - fix(unix): handle Statfs field types (jordanhubbard)\n5. #645 - feat: /plan-to-beads Claude Code command (petebytes)\n6. #642, #641, #640 - sync branch fixes (cpdata)\n\n## Review Checklist\n- Check CI status with `gh pr checks \u003cnum\u003e --repo steveyegge/beads`\n- Verify no .beads/ data leaking (we have a hook now)\n- Review code quality\n- Merge good ones, request changes on problematic ones\n\n## Notes\n- User wants us to be proactive about merging good PRs\n- Can add tests ourselves if coverage drops","status":"closed","priority":2,"issue_type":"message","created_at":"2025-12-19T17:44:34.149837-08:00","updated_at":"2025-12-19T23:28:32.428731-08:00","closed_at":"2025-12-19T17:53:20.386937-08:00","sender":"Steve Yegge","ephemeral":true} {"id":"bd-eyto","title":"Time-dependent tests may be flaky near TTL boundary","description":"Several tombstone merge tests use time.Now() to create test data: time.Now().Add(-24 * time.Hour), time.Now().Add(-60 * 24 * time.Hour), etc. While these work reliably in practice (24h vs 30d TTL has large margin), they could theoretically be flaky if: 1) Tests run slowly, 2) System clock changes during test, 3) TTL constants change. Recommendation: Consider using a fixed reference time or time injection for deterministic tests. Lower priority since current margin is large. Files: internal/merge/merge_test.go:1337-1338, 1352-1353, 1548-1549, 1590-1591","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-05T16:37:02.348143-08:00","updated_at":"2025-12-05T16:37:02.348143-08:00"} -{"id":"bd-f3ll","title":"Merge: bd-ot0w","description":"branch: polecat/dementus\ntarget: main\nsource_issue: bd-ot0w\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:20:33.495772-08:00","updated_at":"2025-12-19T23:20:33.495772-08:00"} +{"id":"bd-f3ll","title":"Merge: bd-ot0w","description":"branch: polecat/dementus\ntarget: main\nsource_issue: bd-ot0w\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:20:33.495772-08:00","updated_at":"2025-12-20T23:17:27.000252-08:00","closed_at":"2025-12-20T23:17:27.000252-08:00","close_reason":"Branches nuked, MRs obsolete"} {"id":"bd-f5cc","title":"Thread Test","description":"Testing the thread feature","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:01.244501-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-f5cc","depends_on_id":"bd-x36g","type":"supersedes","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} {"id":"bd-fa2h","title":"šŸ¤ HANDOFF: v0.31.0 released, molecules discussion","description":"Session completed 0.31.0 release and had important molecules discussion.\n\n## Completed\n- v0.31.0 released (deferred status, audit trail, directory labels, etc.)\n- Fixed lint issues, hook version markers, codesigning\n- All CI green, artifacts verified\n\n## Filed Issues\n- bd-usro: Rename template instantiate ā†’ bd mol bond\n- bd-y8bj: Auto-detect identity for bd mail (P1 bug)\n- gt-975: Molecule execution support for polecats/crew\n- gt-976: Crew lifecycle support in Deacon\n\n## Key Insight\nMolecules are the future - TodoWrite is ephemeral, molecules are persistent institutional memory on the world chain. I tried to use TodoWrite for version bump and missed steps (codesigning, MCP verification). Molecules would have caught this.\n\n## Next Steps\n- bd mol bond implementation is priority\n- Max has gt-976 for crew lifecycle (enables automated refresh mid-molecule)\n\nCheck bd ready and gt-975/976 status.","status":"open","priority":2,"issue_type":"message","assignee":"beads/crew/dave","created_at":"2025-12-20T17:23:09.889562-08:00","updated_at":"2025-12-20T17:23:09.889562-08:00","sender":"Steve Yegge","ephemeral":true} {"id":"bd-fgw3","title":"Update local installation","description":"Run install script or brew upgrade to get new version locally: curl -fsSL .../install.sh | bash","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:05.052016-08:00","updated_at":"2025-12-20T00:49:51.928221-08:00","closed_at":"2025-12-20T00:25:52.805029-08:00","dependencies":[{"issue_id":"bd-fgw3","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.248427-08:00","created_by":"daemon"},{"issue_id":"bd-fgw3","depends_on_id":"bd-si4g","type":"blocks","created_at":"2025-12-19T22:56:23.497325-08:00","created_by":"daemon"}]} @@ -161,11 +161,11 @@ {"id":"bd-hlsw.3","title":"Auto-recovery mode (bd sync --auto-recover)","description":"Add bd sync --auto-recover flag that: detects problematic sync state, backs up .beads/issues.db with timestamp, rebuilds DB from JSONL atomically, verifies consistency, reports what was fixed. Provides safety valve when sync integrity fails.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-14T10:40:20.599836875-07:00","updated_at":"2025-12-14T10:40:20.599836875-07:00","dependencies":[{"issue_id":"bd-hlsw.3","depends_on_id":"bd-hlsw","type":"parent-child","created_at":"2025-12-14T10:40:20.600435888-07:00","created_by":"daemon","metadata":"{}"}]} {"id":"bd-hlsw.4","title":"Sync branch integrity guards","description":"Track sync branch parent commit. If sync branch was force-pushed, warn user and require confirmation before proceeding. Add option to reset to remote if user accepts rebase. Prevents silent corruption from forced pushes.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-14T10:40:20.645402352-07:00","updated_at":"2025-12-14T10:40:20.645402352-07:00","dependencies":[{"issue_id":"bd-hlsw.4","depends_on_id":"bd-hlsw","type":"parent-child","created_at":"2025-12-14T10:40:20.646425761-07:00","created_by":"daemon","metadata":"{}"}]} {"id":"bd-hnkg","title":"GH#540: Add silent quick-capture mode (bd q)","description":"Add bd q alias for quick capture that outputs only issue ID. Useful for piping/scripting. See GitHub issue #540.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:03:38.260135-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} -{"id":"bd-hvng","title":"Merge: bd-w193","description":"branch: polecat/nux\ntarget: main\nsource_issue: bd-w193\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:23:47.496139-08:00","updated_at":"2025-12-19T23:23:47.496139-08:00"} +{"id":"bd-hvng","title":"Merge: bd-w193","description":"branch: polecat/nux\ntarget: main\nsource_issue: bd-w193\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:23:47.496139-08:00","updated_at":"2025-12-20T23:17:26.996479-08:00","closed_at":"2025-12-20T23:17:26.996479-08:00","close_reason":"Branches nuked, MRs obsolete"} {"id":"bd-hw3w","title":"Update info.go versionChanges","description":"Add entry to versionChanges in cmd/bd/info.go with agent-actionable changes for {{version}}","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:01.016558-08:00","updated_at":"2025-12-20T17:59:26.262511-08:00","closed_at":"2025-12-20T01:23:50.3879-08:00","dependencies":[{"issue_id":"bd-hw3w","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:14.941855-08:00","created_by":"daemon"},{"issue_id":"bd-hw3w","depends_on_id":"bd-czss","type":"blocks","created_at":"2025-12-19T22:56:23.219257-08:00","created_by":"daemon"}]} {"id":"bd-hy9p","title":"Add --body-file flag to bd create for reading descriptions from files","description":"## Problem\n\nCreating issues with long/complex descriptions via CLI requires shell escaping gymnastics:\n\n```bash\n# Current workaround - awkward heredoc quoting\nbd create --title=\"...\" --description=\"$(cat \u003c\u003c'EOF'\n...markdown...\nEOF\n)\"\n\n# Often fails with quote escaping errors in eval context\n# Agents resort to writing temp files then reading them\n```\n\n## Proposed Solution\n\nAdd `--body-file` and `--description-file` flags to read description from a file, matching `gh` CLI pattern.\n\n```bash\n# Natural pattern that aligns with training data\ncat \u003e /tmp/desc.md \u003c\u003c 'EOF'\n...markdown content...\nEOF\n\nbd create --title=\"...\" --body-file=/tmp/desc.md\n```\n\n## Implementation\n\n### 1. Add new flags to `bd create`\n\n```go\ncreateCmd.Flags().String(\"body-file\", \"\", \"Read description from file (use - for stdin)\")\ncreateCmd.Flags().String(\"description-file\", \"\", \"Alias for --body-file\")\n```\n\n### 2. Flag precedence\n\n- If `--body-file` or `--description-file` is provided, read from file\n- If value is `-`, read from stdin\n- Otherwise fall back to `--body` or `--description` flag\n- If neither provided, description is empty (current behavior)\n\n### 3. Error handling\n\n- File doesn't exist ā†’ clear error message\n- File not readable ā†’ clear error message\n- stdin specified but not available ā†’ clear error message\n\n## Benefits\n\nāœ… **Matches training data**: `gh issue create --body-file file.txt` is a common pattern\nāœ… **No shell escaping issues**: File content is read directly\nāœ… **Works with any content**: Markdown, special characters, quotes, etc.\nāœ… **Agent-friendly**: Agents already write complex content to temp files\nāœ… **User-friendly**: Easier for humans too when pasting long descriptions\n\n## Related Commands\n\nConsider adding similar support to:\n- `bd update --body-file` (for updating descriptions)\n- `bd comment --body-file` (if/when we add comments)\n\n## Examples\n\n```bash\n# From file\nbd create --title=\"Add new feature\" --body-file=feature.md\n\n# From stdin\necho \"Quick description\" | bd create --title=\"Bug fix\" --body-file=-\n\n# With other flags\nbd create \\\n --title=\"Security issue\" \\\n --type=bug \\\n --priority=0 \\\n --body-file=security-report.md \\\n --label=security\n```\n\n## Testing\n\n- Test with normal files\n- Test with stdin (`-`)\n- Test with non-existent files (error handling)\n- Test with binary files (should handle gracefully)\n- Test with empty files (valid - empty description)\n- Test that `--description-file` and `--body-file` are equivalent aliases","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-11-22T00:02:08.762684-08:00","updated_at":"2025-12-17T23:13:40.536024-08:00","closed_at":"2025-12-17T17:28:52.505239-08:00"} {"id":"bd-hzvz","title":"Update info.go versionChanges","description":"Add entry to versionChanges in cmd/bd/info.go with agent-actionable changes for 0.30.7","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649359-08:00","updated_at":"2025-12-19T22:57:31.604229-08:00","closed_at":"2025-12-19T22:57:31.604229-08:00","dependencies":[{"issue_id":"bd-hzvz","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.652068-08:00","created_by":"stevey"},{"issue_id":"bd-hzvz","depends_on_id":"bd-2ep8","type":"blocks","created_at":"2025-12-19T22:56:48.652376-08:00","created_by":"stevey"}]} -{"id":"bd-i0rx","title":"Merge: bd-ao0s","description":"branch: polecat/rictus\ntarget: main\nsource_issue: bd-ao0s\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-20T01:13:42.716658-08:00","updated_at":"2025-12-20T01:13:42.716658-08:00"} +{"id":"bd-i0rx","title":"Merge: bd-ao0s","description":"branch: polecat/rictus\ntarget: main\nsource_issue: bd-ao0s\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-20T01:13:42.716658-08:00","updated_at":"2025-12-20T23:17:26.993744-08:00","closed_at":"2025-12-20T23:17:26.993744-08:00","close_reason":"Branches nuked, MRs obsolete"} {"id":"bd-in7","title":"Test message","description":"Hello world","status":"closed","priority":2,"issue_type":"message","created_at":"2025-12-17T23:16:13.184946-08:00","updated_at":"2025-12-18T17:42:26.000073-08:00","closed_at":"2025-12-17T23:37:38.563369-08:00"} {"id":"bd-indn","title":"bd template commands fail with daemon mode","description":"The `bd template show` and `bd template instantiate` commands fail with 'Error loading template: no database connection' when daemon is running.\n\n**Reproduction:**\n```bash\nbd daemon --start\nbd template show bd-qqc # Error: no database connection\nbd template show bd-qqc --no-daemon # Works\n```\n\n**Expected:** Template commands should work with daemon like other commands.\n\n**Workaround:** Use `--no-daemon` flag.\n\n**Location:** Likely in cmd/bd/template.go - daemon RPC path not implemented for template operations.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-18T22:57:35.16596-08:00","updated_at":"2025-12-18T22:57:35.16596-08:00"} {"id":"bd-io8c","title":"Improve test coverage for internal/syncbranch (33.0% ā†’ 70%)","description":"The syncbranch package has only 33.0% test coverage. This package handles git sync operations and is critical for data integrity.\n\nCurrent coverage: 33.0%\nTarget coverage: 70%","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-13T20:43:02.079145-08:00","updated_at":"2025-12-13T21:01:14.972533-08:00"} @@ -276,7 +276,7 @@ {"id":"bd-si4g","title":"Verify release artifacts","description":"Check GitHub releases page - binaries for darwin/linux/windows should be available","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:04.183029-08:00","updated_at":"2025-12-20T00:49:51.92894-08:00","closed_at":"2025-12-20T00:25:52.720816-08:00","dependencies":[{"issue_id":"bd-si4g","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.173619-08:00","created_by":"daemon"},{"issue_id":"bd-si4g","depends_on_id":"bd-otli","type":"blocks","created_at":"2025-12-19T22:56:23.428507-08:00","created_by":"daemon"}]} {"id":"bd-siz1","title":"GH#532: bd sync circular error (suggests running bd sync)","description":"bd sync error message recommends running bd sync to fix the bd sync error. Fix error handling to provide useful guidance. See GitHub issue #532.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:04:00.543573-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-su45","title":"Protect pinned issues from bd cleanup/compact","description":"Update bd cleanup and bd compact to never delete pinned issues, even if they are closed. Pinned issues should persist indefinitely as reference material.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:46.204783-08:00","updated_at":"2025-12-19T17:43:35.712617-08:00","closed_at":"2025-12-19T00:43:04.06406-08:00","dependencies":[{"issue_id":"bd-su45","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.64582-08:00","created_by":"daemon"},{"issue_id":"bd-su45","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.857586-08:00","created_by":"daemon"}]} -{"id":"bd-sumr","title":"Merge: bd-t4sb","description":"branch: polecat/capable\ntarget: main\nsource_issue: bd-t4sb\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:22:21.343724-08:00","updated_at":"2025-12-19T23:22:21.343724-08:00"} +{"id":"bd-sumr","title":"Merge: bd-t4sb","description":"branch: polecat/capable\ntarget: main\nsource_issue: bd-t4sb\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:22:21.343724-08:00","updated_at":"2025-12-20T23:17:26.997992-08:00","closed_at":"2025-12-20T23:17:26.997992-08:00","close_reason":"Branches nuked, MRs obsolete"} {"id":"bd-svb5","title":"GH#505: Add bd reset/wipe command","description":"Add command to cleanly reset/wipe beads database. User reports painful manual process to start fresh. See GitHub issue #505.","status":"tombstone","priority":2,"issue_type":"feature","created_at":"2025-12-16T01:03:42.160966-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"feature"} {"id":"bd-t4sb","title":"Work on beads-d8h: Fix prefix mismatch false positive wit...","description":"Work on beads-d8h: Fix prefix mismatch false positive with multi-hyphen prefixes like 'asianops-audit-' (GH#422). When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:56:19.545069-08:00","updated_at":"2025-12-19T23:28:32.429127-08:00","closed_at":"2025-12-19T23:21:45.471711-08:00","close_reason":"Fixed multi-hyphen prefix false positive in ValidateIDFormat (GH#422)"} {"id":"bd-t4u1","title":"False positive detection by Kaspersky Antivirus (Trojan)","description":"Kaspersky Antivirus falsely detects beads (bd.exe v0.23.1) as a Trojan (PDM:Trojan.Win32.Generic) and removes it.\nEvent: Malicious object detected\nComponent: System Watcher\nObject name: bd.exe\n","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-20T18:56:12.498187-05:00","updated_at":"2025-11-20T18:56:12.498187-05:00"} @@ -288,17 +288,18 @@ {"id":"bd-toy3","title":"Test hook","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T18:33:39.717036-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-tvu3","title":"Improve test coverage for internal/beads (48.1% ā†’ 70%)","description":"The beads package is a core package with 48.1% coverage. As the primary package for issue management, it should have at least 70% coverage.\n\nCurrent coverage: 48.1%\nTarget coverage: 70%","status":"open","priority":1,"issue_type":"task","created_at":"2025-12-13T20:42:59.739142-08:00","updated_at":"2025-12-13T21:01:14.874359-08:00"} {"id":"bd-u0g9","title":"GH#405: Prefix parsing with hyphens treats first segment as prefix","description":"Prefix me-py-toolkit gets parsed as just me- when detecting mismatches. Fix prefix parsing to handle multi-hyphen prefixes. See GitHub issue #405.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:18.354066-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-u0sb","title":"Merge: bd-uqfn","description":"branch: polecat/cheedo\ntarget: main\nsource_issue: bd-uqfn\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-20T01:11:52.033964-08:00","updated_at":"2025-12-20T01:11:52.033964-08:00"} +{"id":"bd-u0sb","title":"Merge: bd-uqfn","description":"branch: polecat/cheedo\ntarget: main\nsource_issue: bd-uqfn\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-20T01:11:52.033964-08:00","updated_at":"2025-12-20T23:17:26.994875-08:00","closed_at":"2025-12-20T23:17:26.994875-08:00","close_reason":"Branches nuked, MRs obsolete"} {"id":"bd-umbf","title":"Design contributor namespace isolation for beads pollution prevention","description":"## Problem\n\nWhen contributors work on beads-the-project using beads-the-tool, their personal work-tracking issues leak into PRs. The .beads/issues.jsonl is intentionally tracked (it's the project's issue database), but contributors' local issues pollute the diff.\n\nThis is a recursion problem unique to self-hosting projects.\n\n## Possible Solutions to Explore\n\n1. **Contributor namespaces** - Each contributor gets a private prefix (e.g., `bd-steve-xxxx`) that's gitignored or filtered\n2. **Separate database** - Contributors use BEADS_DIR pointing elsewhere for personal tracking\n3. **Issue ownership/visibility flags** - Mark issues as \"local-only\" vs \"project\"\n4. **Prefix-based filtering** - Configure which prefixes are committed vs ignored\n\n## Design Considerations\n\n- Should be zero-friction for contributors (no manual setup)\n- Must not break existing workflows\n- Needs to work with sync/collaboration features\n- Consider: what if a \"personal\" issue graduates to \"project\" issue?\n\n## Expansion Needed\n\nThis is a placeholder. Needs detailed design exploration before implementation.","status":"open","priority":2,"issue_type":"feature","created_at":"2025-12-13T18:00:29.638743-08:00","updated_at":"2025-12-13T18:00:41.345673-08:00"} {"id":"bd-uqfn","title":"Work on beads-wkt: Output control parameters for MCP tool...","description":"Work on beads-wkt: Output control parameters for MCP tools (GH#622). Add brief, fields, max_description_length params to ready/list/show. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:57:10.675535-08:00","updated_at":"2025-12-20T00:49:51.929271-08:00","closed_at":"2025-12-19T23:28:25.362931-08:00","close_reason":"Implemented output control parameters for MCP tools (GH#622)"} -{"id":"bd-usro","title":"Rename 'template instantiate' to 'mol bond'","description":"Rename the template instantiation command to match molecule metaphor.\n\nCurrent: bd template instantiate \u003cid\u003e --var key=value\nTarget: bd mol bond \u003cid\u003e --var key=value\n\nChanges needed:\n- Add 'mol' command group (or extend existing)\n- Add 'bond' subcommand that wraps template instantiate logic\n- Keep 'template instantiate' as deprecated alias for backward compat\n- Update help text and docs to use molecule terminology\n\nThe 'bond' verb captures:\n1. Chemistry metaphor (molecules bond to form structures)\n2. Dependency linking (child issues bonded in a DAG)\n3. Short and active\n\nSee also: molecule execution model in Gas Town","status":"open","priority":1,"issue_type":"feature","created_at":"2025-12-20T16:56:37.582795-08:00","updated_at":"2025-12-20T16:56:37.582795-08:00"} +{"id":"bd-usro","title":"Rename 'template instantiate' to 'mol bond'","description":"Rename the template instantiation command to match molecule metaphor.\n\nCurrent: bd template instantiate \u003cid\u003e --var key=value\nTarget: bd mol bond \u003cid\u003e --var key=value\n\nChanges needed:\n- Add 'mol' command group (or extend existing)\n- Add 'bond' subcommand that wraps template instantiate logic\n- Keep 'template instantiate' as deprecated alias for backward compat\n- Update help text and docs to use molecule terminology\n\nThe 'bond' verb captures:\n1. Chemistry metaphor (molecules bond to form structures)\n2. Dependency linking (child issues bonded in a DAG)\n3. Short and active\n\nSee also: molecule execution model in Gas Town","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-12-20T16:56:37.582795-08:00","updated_at":"2025-12-20T23:22:43.567337-08:00","closed_at":"2025-12-20T23:22:43.567337-08:00","close_reason":"Implemented mol command: catalog, show, bond"} {"id":"bd-uutv","title":"Work on beads-rs0: Namepool configuration for themed pole...","description":"Work on beads-rs0: Namepool configuration for themed polecat names. See bd show beads-rs0 for full details.","status":"closed","priority":2,"issue_type":"task","assignee":"beads/polecat-02","created_at":"2025-12-19T21:49:48.129778-08:00","updated_at":"2025-12-19T21:59:25.565894-08:00","closed_at":"2025-12-19T21:59:25.565894-08:00","close_reason":"Completed work on beads-rs0: Implemented themed namepool feature"} {"id":"bd-vgi5","title":"Push version bump to GitHub","description":"git push origin main - triggers CI but no release yet.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:05.363604-08:00","updated_at":"2025-12-18T22:46:57.50777-08:00","closed_at":"2025-12-18T22:46:57.50777-08:00","dependencies":[{"issue_id":"bd-vgi5","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.87736-08:00","created_by":"daemon"},{"issue_id":"bd-vgi5","depends_on_id":"bd-3ggb","type":"blocks","created_at":"2025-12-18T22:43:21.078208-08:00","created_by":"daemon"}]} {"id":"bd-vpan","title":"Re: Thread Test 2","description":"Got your message. Testing reply feature.","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:29.144352-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-vpan","depends_on_id":"bd-x36g","type":"replies-to","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} {"id":"bd-vs9","title":"Fix unparam unused parameter in cmd/bd/doctor.go:541","description":"Linting issue: checkHooksQuick - path is unused (unparam) at cmd/bd/doctor.go:541:22. Error: func checkHooksQuick(path string) string {","status":"closed","issue_type":"bug","created_at":"2025-12-07T15:35:17.02177046-07:00","updated_at":"2025-12-17T23:13:40.535743-08:00","closed_at":"2025-12-17T16:46:11.028332-08:00"} {"id":"bd-w193","title":"Work on beads-399: Add omitempty to JSONL fields for smal...","description":"Work on beads-399: Add omitempty to JSONL fields for smaller notifications. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:37.440894-08:00","updated_at":"2025-12-19T23:28:32.42751-08:00","closed_at":"2025-12-19T23:23:09.542288-08:00","close_reason":"Added omitempty to Description and Dependency.CreatedBy fields in types.go"} +{"id":"bd-w8g0","title":"test pin issue","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-20T22:44:27.963361-08:00","updated_at":"2025-12-20T22:44:57.977229-08:00","deleted_at":"2025-12-20T22:44:57.977229-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} {"id":"bd-wc2","title":"Test body-file","description":"This is a test description from a file.\n\nIt has multiple lines.\n","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-17T17:27:20.508724-08:00","updated_at":"2025-12-17T17:28:33.83142-08:00","closed_at":"2025-12-17T17:28:33.83142-08:00"} -{"id":"bd-whgv","title":"Merge: bd-401h","description":"branch: polecat/rictus\ntarget: main\nsource_issue: bd-401h\nrig: beads","status":"open","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:20:37.854953-08:00","updated_at":"2025-12-19T23:20:37.854953-08:00"} +{"id":"bd-whgv","title":"Merge: bd-401h","description":"branch: polecat/rictus\ntarget: main\nsource_issue: bd-401h\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:20:37.854953-08:00","updated_at":"2025-12-20T23:17:26.999477-08:00","closed_at":"2025-12-20T23:17:26.999477-08:00","close_reason":"Branches nuked, MRs obsolete"} {"id":"bd-x1xs","title":"Work on beads-1ra: Add molecules.jsonl as separate catalo...","description":"Work on beads-1ra: Add molecules.jsonl as separate catalog file for template molecules","status":"in_progress","priority":2,"issue_type":"task","assignee":"beads/polecat-01","created_at":"2025-12-19T20:17:44.840032-08:00","updated_at":"2025-12-19T20:17:44.905944-08:00"} {"id":"bd-x36g","title":"Thread Test 2","description":"Testing direct mode","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:16.470631-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} {"id":"bd-x3hi","title":"Support redirect files in .beads/ directory","description":"Gas Town creates polecat worktrees with .beads/redirect files that point to a shared beads database. The bd CLI should:\n\n1. When finding a .beads/ directory, check if it contains a 'redirect' file\n2. If redirect exists, read the relative path and use that as the beads directory\n3. This allows multiple git worktrees to share a single beads database\n\nExample:\n- polecats/alpha/.beads/redirect contains '../../mayor/rig/.beads'\n- bd commands from alpha should use mayor/rig/.beads\n\nCurrently bd ignores redirect files and either uses the local .beads/ or walks up to find a parent .beads/.\n\nRelated: gt-nriy (test message that can't be retrieved due to missing redirect support)","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-12-20T21:46:23.415172-08:00","updated_at":"2025-12-20T21:59:25.759664-08:00","closed_at":"2025-12-20T21:59:25.759664-08:00","close_reason":"Not applicable - filed against stale bd v0.30.6"}