From c4f5c0872513020348c4866092cf44051653f004 Mon Sep 17 00:00:00 2001 From: wolf Date: Mon, 5 Jan 2026 19:14:26 -0800 Subject: [PATCH] bd sync: 2026-01-05 19:14:26 --- .beads/issues.jsonl | 66 ++++++++++++++++++++++----------------------- 1 file changed, 33 insertions(+), 33 deletions(-) diff --git a/.beads/issues.jsonl b/.beads/issues.jsonl index f847c1f1..391d0be9 100644 --- a/.beads/issues.jsonl +++ b/.beads/issues.jsonl @@ -30,9 +30,9 @@ {"id":"bd-1ban","title":"Test actor direct","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-26T20:46:02.423367-08:00","updated_at":"2025-12-28T09:26:06.083095-08:00","closed_at":"2025-12-28T09:26:06.083095-08:00"} {"id":"bd-1dez","title":"Mol Mall: Formula marketplace using GitHub as backend","description":"Create a marketplace for sharing molecule formulas using GitHub repos as the hosting backend.\n\n## Architecture Update (Dec 2025)\n\n**Formulas are the sharing layer.** With ephemeral protos (bd-rciw), the architecture is:\n\n```\nFormulas ──cook──→ [ephemeral proto] ──pour/wisp──→ Mol/Wisp\n ↑ │\n └────────────────── distill ─────────────────────────┘\n```\n\n- **Formulas**: JSON source files (.formula.json) - the thing you share\n- **Protos**: Transient compilation artifacts - auto-deleted after use\n- **Mols/Wisps**: Execution instances - not shared directly\n\n**Key operations:**\n- `bd distill \u003cmol-id\u003e` → Extract formula from completed work\n- `bd mol publish \u003cformula\u003e` → Share to GitHub\n- `bd mol install \u003curl\u003e` → Fetch from GitHub\n- `bd pour \u003cformula\u003e` → Cook and spawn (proto is ephemeral)\n\n## Why GitHub?\n\nGitHub solves multiple problems at once:\n- **Hosting**: Raw file URLs for formula.json\n- **Versioning**: Git tags (v1.0.0, v1.2.0)\n- **Auth**: GitHub tokens for private formulas\n- **Discovery**: GitHub search, topics, stars\n- **Collaboration**: PRs for contributions, issues for bugs\n- **Organizations**: Natural scoping (@anthropic/, @gastown/)\n\n## URL Scheme\n\n```bash\n# Direct GitHub URL\nbd mol install github.com/anthropics/mol-code-review\n\n# With version tag\nbd mol install github.com/anthropics/mol-code-review@v1.2.0\n\n# Shorthand (via registry lookup)\nbd mol install @anthropic/mol-code-review\n```\n\n## Architecture\n\nEach formula lives in its own repo (like Go modules):\n```\ngithub.com/anthropics/mol-code-review/\n├── formula.json # The formula\n├── README.md # Documentation\n└── CHANGELOG.md # Version history\n```\n\n## ID Namespace\n\n| Entity | ID Format | Example |\n|--------|-----------|---------|\n| Formula (GitHub) | `github.com/org/repo` | `github.com/anthropics/mol-code-review` |\n| Installed formula | `mol-name` | `mol-code-review` |\n| Poured instance | `\u003cdb\u003e-mol-xxx` | `bd-mol-b8c` |","notes":"Deferred - focusing on Christmas launch first","status":"closed","priority":2,"issue_type":"epic","created_at":"2025-12-25T12:05:17.666574-08:00","updated_at":"2025-12-25T21:53:13.415431-08:00","closed_at":"2025-12-25T21:53:13.415431-08:00"} {"id":"bd-1dez.1","title":"bd distill: Extract formula from mol/epic","description":"Extract a formula from completed work (mol, wisp, or epic).\n\n**Key change**: Distill works on execution artifacts (mols/wisps/epics), not protos.\nProtos are ephemeral - they don't persist. Distillation extracts patterns from\nactual executed work.\n\n## Usage\n```bash\nbd distill bd-mol-xyz -o my-workflow.formula.json\nbd distill bd-epic-abc -o feature-workflow.formula.json\n```\n\n## Use Cases\n- **Emergent patterns**: Structured work manually, want to templatize it\n- **Modified execution**: Poured a formula, added custom steps, want to capture\n- **Learning from success**: Extract what made a complex mol succeed\n\n## Implementation\n1. Load mol/wisp/epic subgraph (root + all children)\n2. Convert to formula JSON structure\n3. Extract variables from patterns (titles, descriptions)\n4. Generate step IDs from issue titles (slugify)\n5. Write .formula.json file\n\n## Output Format\n```json\n{\n \"formula\": \"my-workflow\",\n \"description\": \"...\",\n \"version\": 1,\n \"vars\": { ... },\n \"steps\": [ ... ]\n}\n```\n\n## Architecture Note\nThis closes the formula lifecycle loop:\n Formulas ──cook──→ Mols ──distill──→ Formulas\n\nAll sharing happens via formulas. Mols contain execution context and aren't shared.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-25T12:05:47.045105-08:00","updated_at":"2025-12-25T18:54:39.967765-08:00","closed_at":"2025-12-25T18:54:39.967765-08:00","dependencies":[{"issue_id":"bd-1dez.1","depends_on_id":"bd-1dez","type":"parent-child","created_at":"2025-12-25T12:05:47.045596-08:00","created_by":"daemon"}]} -{"id":"bd-1dez.2","title":"bd formula add: Import formula to local catalog","description":"Import a formula file to the local catalog (search path).\n\n**Replaces**: \"bd mol promote\" (proto-to-proto concept is obsolete with ephemeral protos)\n\n## Usage\n```bash\n# Add a formula file to project catalog\nbd formula add my-workflow.formula.json\n\n# Add to user-level catalog\nbd formula add my-workflow.formula.json --scope user\n\n# Add from URL\nbd formula add https://example.com/workflow.formula.json\n```\n\n## Implementation\n1. Parse the formula file (validate JSON structure)\n2. Determine target directory based on scope:\n - project: .beads/formulas/\n - user: ~/.beads/formulas/\n - town: ~/gt/.beads/formulas/\n3. Copy/download formula to target\n4. Verify it is loadable: bd formula show \u003cname\u003e\n\n## Flags\n- `--scope \u003clevel\u003e` - Where to add (project|user|town, default: project)\n- `--name \u003cname\u003e` - Override formula name (default: from file)\n\n## Note\nThis is for manually adding formulas. For GitHub-hosted formulas, use:\n bd mol install github.com/org/formula-name","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-25T12:05:48.588283-08:00","updated_at":"2025-12-25T19:54:35.242576-08:00","closed_at":"2025-12-25T19:54:35.242576-08:00","dependencies":[{"issue_id":"bd-1dez.2","depends_on_id":"bd-1dez.1","type":"blocks","created_at":"2025-12-25T12:07:06.745686-08:00","created_by":"daemon"},{"issue_id":"bd-1dez.2","depends_on_id":"bd-1dez","type":"parent-child","created_at":"2025-12-25T12:05:48.590203-08:00","created_by":"daemon"}]} -{"id":"bd-1dez.3","title":"bd mol install: Install formula from GitHub","description":"Download and cook a formula from a GitHub repository.\n\n## Usage\n```bash\n# Direct GitHub URL\nbd mol install github.com/anthropics/mol-code-review\n\n# With version tag \nbd mol install github.com/anthropics/mol-code-review@v1.2.0\n\n# Shorthand (future: via registry lookup)\nbd mol install @anthropic/mol-code-review\n```\n\n## Implementation\n1. Parse URL: extract org, repo, optional version tag\n2. Construct raw URL: `https://raw.githubusercontent.com/org/repo/[tag]/formula.json`\n3. Fetch formula.json via HTTP\n4. Validate formula structure\n5. Save to .beads/formulas/\n6. Run cook to create local proto\n7. Record in .beads/installed.json for update tracking\n\n## installed.json Format\n```json\n{\n \"mol-code-review\": {\n \"source\": \"github.com/anthropics/mol-code-review\",\n \"version\": \"v1.2.0\",\n \"installed_at\": \"2025-12-25T12:00:00Z\"\n }\n}\n```\n\n## Dependencies\n- Requires network access\n- Uses `gh` CLI or direct HTTP for auth (private repos)\n","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-25T12:05:49.757336-08:00","updated_at":"2025-12-25T21:53:13.417927-08:00","closed_at":"2025-12-25T21:53:13.417927-08:00","dependencies":[{"issue_id":"bd-1dez.3","depends_on_id":"bd-1dez","type":"parent-child","created_at":"2025-12-25T12:05:49.759176-08:00","created_by":"daemon"},{"issue_id":"bd-1dez.3","depends_on_id":"bd-1dez.7","type":"blocks","created_at":"2025-12-25T12:07:06.825716-08:00","created_by":"daemon"}]} -{"id":"bd-1dez.4","title":"bd mol update: Check and update installed formulas","description":"Check for newer versions of installed formulas and update them.\n\n## Usage\n```bash\nbd mol update # Update all\nbd mol update mol-code-review # Update specific formula\nbd mol update --check # Just check, don't update\n```\n\n## Implementation\n1. Read .beads/installed.json\n2. For each installed formula:\n - Fetch latest tag from GitHub API\n - Compare with installed version\n - If newer: download, cook, update installed.json\n3. Report what was updated\n\n## Flags\n- `--check` - Only check for updates, don't install\n- `--force` - Reinstall even if up to date\n- `--json` - Machine-readable output\n","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-25T12:05:50.952041-08:00","updated_at":"2025-12-25T21:53:13.41919-08:00","closed_at":"2025-12-25T21:53:13.41919-08:00","dependencies":[{"issue_id":"bd-1dez.4","depends_on_id":"bd-1dez","type":"parent-child","created_at":"2025-12-25T12:05:50.952584-08:00","created_by":"daemon"},{"issue_id":"bd-1dez.4","depends_on_id":"bd-1dez.3","type":"blocks","created_at":"2025-12-25T12:07:06.90486-08:00","created_by":"daemon"},{"issue_id":"bd-1dez.4","depends_on_id":"bd-1dez.8","type":"blocks","created_at":"2025-12-25T12:07:06.99578-08:00","created_by":"daemon"}]} +{"id":"bd-1dez.2","title":"bd formula add: Import formula to local catalog","description":"Import a formula file to the local catalog (search path).\n\n**Replaces**: \"bd mol promote\" (proto-to-proto concept is obsolete with ephemeral protos)\n\n## Usage\n```bash\n# Add a formula file to project catalog\nbd formula add my-workflow.formula.json\n\n# Add to user-level catalog\nbd formula add my-workflow.formula.json --scope user\n\n# Add from URL\nbd formula add https://example.com/workflow.formula.json\n```\n\n## Implementation\n1. Parse the formula file (validate JSON structure)\n2. Determine target directory based on scope:\n - project: .beads/formulas/\n - user: ~/.beads/formulas/\n - town: ~/gt/.beads/formulas/\n3. Copy/download formula to target\n4. Verify it is loadable: bd formula show \u003cname\u003e\n\n## Flags\n- `--scope \u003clevel\u003e` - Where to add (project|user|town, default: project)\n- `--name \u003cname\u003e` - Override formula name (default: from file)\n\n## Note\nThis is for manually adding formulas. For GitHub-hosted formulas, use:\n bd mol install github.com/org/formula-name","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-25T12:05:48.588283-08:00","updated_at":"2025-12-25T19:54:35.242576-08:00","closed_at":"2025-12-25T19:54:35.242576-08:00","dependencies":[{"issue_id":"bd-1dez.2","depends_on_id":"bd-1dez","type":"parent-child","created_at":"2025-12-25T12:05:48.590203-08:00","created_by":"daemon"},{"issue_id":"bd-1dez.2","depends_on_id":"bd-1dez.1","type":"blocks","created_at":"2025-12-25T12:07:06.745686-08:00","created_by":"daemon"}]} +{"id":"bd-1dez.3","title":"bd mol install: Install formula from GitHub","description":"Download and cook a formula from a GitHub repository.\n\n## Usage\n```bash\n# Direct GitHub URL\nbd mol install github.com/anthropics/mol-code-review\n\n# With version tag \nbd mol install github.com/anthropics/mol-code-review@v1.2.0\n\n# Shorthand (future: via registry lookup)\nbd mol install @anthropic/mol-code-review\n```\n\n## Implementation\n1. Parse URL: extract org, repo, optional version tag\n2. Construct raw URL: `https://raw.githubusercontent.com/org/repo/[tag]/formula.json`\n3. Fetch formula.json via HTTP\n4. Validate formula structure\n5. Save to .beads/formulas/\n6. Run cook to create local proto\n7. Record in .beads/installed.json for update tracking\n\n## installed.json Format\n```json\n{\n \"mol-code-review\": {\n \"source\": \"github.com/anthropics/mol-code-review\",\n \"version\": \"v1.2.0\",\n \"installed_at\": \"2025-12-25T12:00:00Z\"\n }\n}\n```\n\n## Dependencies\n- Requires network access\n- Uses `gh` CLI or direct HTTP for auth (private repos)\n","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-25T12:05:49.757336-08:00","updated_at":"2025-12-25T21:53:13.417927-08:00","closed_at":"2025-12-25T21:53:13.417927-08:00","dependencies":[{"issue_id":"bd-1dez.3","depends_on_id":"bd-1dez.7","type":"blocks","created_at":"2025-12-25T12:07:06.825716-08:00","created_by":"daemon"},{"issue_id":"bd-1dez.3","depends_on_id":"bd-1dez","type":"parent-child","created_at":"2025-12-25T12:05:49.759176-08:00","created_by":"daemon"}]} +{"id":"bd-1dez.4","title":"bd mol update: Check and update installed formulas","description":"Check for newer versions of installed formulas and update them.\n\n## Usage\n```bash\nbd mol update # Update all\nbd mol update mol-code-review # Update specific formula\nbd mol update --check # Just check, don't update\n```\n\n## Implementation\n1. Read .beads/installed.json\n2. For each installed formula:\n - Fetch latest tag from GitHub API\n - Compare with installed version\n - If newer: download, cook, update installed.json\n3. Report what was updated\n\n## Flags\n- `--check` - Only check for updates, don't install\n- `--force` - Reinstall even if up to date\n- `--json` - Machine-readable output\n","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-25T12:05:50.952041-08:00","updated_at":"2025-12-25T21:53:13.41919-08:00","closed_at":"2025-12-25T21:53:13.41919-08:00","dependencies":[{"issue_id":"bd-1dez.4","depends_on_id":"bd-1dez.3","type":"blocks","created_at":"2025-12-25T12:07:06.90486-08:00","created_by":"daemon"},{"issue_id":"bd-1dez.4","depends_on_id":"bd-1dez.8","type":"blocks","created_at":"2025-12-25T12:07:06.99578-08:00","created_by":"daemon"},{"issue_id":"bd-1dez.4","depends_on_id":"bd-1dez","type":"parent-child","created_at":"2025-12-25T12:05:50.952584-08:00","created_by":"daemon"}]} {"id":"bd-1dez.5","title":"bd mol search: Find formulas using GitHub API","description":"Search for formulas in the Mol Mall using GitHub's search API.\n\n## Usage\n```bash\nbd mol search \"code review\" # Free text search\nbd mol search --topic molecule # By GitHub topic\nbd mol search --org anthropics # By organization\nbd mol search --stars \"\u003e10\" # By popularity\n```\n\n## Implementation\n1. Use GitHub Search API: `/search/repositories`\n2. Filter by topic:mol-formula or naming convention\n3. Parse results, show name/description/stars/version\n4. Support pagination for large result sets\n\n## Output\n```\nNAME STARS DESCRIPTION\ngithub.com/anthropics/mol-code-review 42 AI-assisted code review workflow\ngithub.com/gastown/mol-polecat-work 12 Standard polecat work lifecycle\n```\n\n## Discovery Convention\nRepos should have:\n- Topic: `mol-formula` or `beads-molecule`\n- Name starting with `mol-`\n- formula.json in root\n","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-25T12:06:40.019394-08:00","updated_at":"2025-12-25T21:53:13.42047-08:00","closed_at":"2025-12-25T21:53:13.42047-08:00","dependencies":[{"issue_id":"bd-1dez.5","depends_on_id":"bd-1dez","type":"parent-child","created_at":"2025-12-25T12:06:40.01989-08:00","created_by":"daemon"}]} {"id":"bd-1dez.6","title":"bd mol publish: Push formula to GitHub repo","description":"Publish a formula to a GitHub repository for sharing.\n\n## Usage\n```bash\n# Create new repo and publish\nbd mol publish mol-my-workflow --repo github.com/myorg/mol-my-workflow\n\n# Update existing repo\nbd mol publish mol-my-workflow --repo github.com/myorg/mol-my-workflow --tag v1.1.0\n```\n\n## Implementation\n1. Export proto to formula.json (if not already a file)\n2. Validate formula structure\n3. Create GitHub repo if --create flag (uses `gh repo create`)\n4. Copy formula.json to repo\n5. Generate README.md from formula description\n6. Commit and push\n7. Create git tag if --tag specified\n8. Add mol-formula topic to repo\n\n## Flags\n- `--repo \u003curl\u003e` - Target GitHub repo (required)\n- `--tag \u003cversion\u003e` - Create version tag\n- `--create` - Create repo if doesn't exist\n- `--private` - Create as private repo\n\n## Workflow\n```bash\n# Full publish flow\nbd mol distill my-epic --name my-workflow\nbd mol promote bd-proto-xxx --as my-workflow\nbd mol publish mol-my-workflow --repo github.com/me/mol-my-workflow --create --tag v1.0.0\n```\n","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-25T12:06:41.419764-08:00","updated_at":"2025-12-25T21:53:13.421752-08:00","closed_at":"2025-12-25T21:53:13.421752-08:00","dependencies":[{"issue_id":"bd-1dez.6","depends_on_id":"bd-1dez","type":"parent-child","created_at":"2025-12-25T12:06:41.420209-08:00","created_by":"daemon"}]} {"id":"bd-1dez.7","title":"Formula versioning: Version field and git tag integration","description":"Add versioning support to formulas for tracking updates.\n\n## Formula Version Field\n```json\n{\n \"formula\": \"mol-code-review\",\n \"version\": \"1.2.0\",\n \"min_bd_version\": \"0.25.0\",\n ...\n}\n```\n\n## Version Semantics\n- Use semver: MAJOR.MINOR.PATCH\n- MAJOR: Breaking changes to step structure\n- MINOR: New optional steps or variables\n- PATCH: Documentation, bug fixes\n\n## Git Tag Integration\n- `bd mol install repo@v1.2.0` fetches that tag\n- `bd mol install repo` fetches latest tag (or main if no tags)\n- `bd mol publish --tag v1.2.0` creates tag\n\n## Proto Version Tracking\nLocal proto should store:\n```\nsource_repo: github.com/anthropics/mol-code-review\nsource_version: v1.2.0\ninstalled_at: 2025-12-25T12:00:00Z\n```\n\nThis enables `bd mol update` to check for newer versions.\n","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-25T12:06:42.674849-08:00","updated_at":"2025-12-25T19:43:22.501926-08:00","closed_at":"2025-12-25T19:43:22.501926-08:00","dependencies":[{"issue_id":"bd-1dez.7","depends_on_id":"bd-1dez","type":"parent-child","created_at":"2025-12-25T12:06:42.67694-08:00","created_by":"daemon"}]} @@ -56,7 +56,7 @@ {"id":"bd-29fb","title":"Implement bd close --continue flag","description":"Auto-advance to next step in molecule when closing an issue. Referenced by gt-um6q, gt-lz13. Needed for molecule navigation workflow.","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-12-23T00:17:55.032875-08:00","updated_at":"2025-12-23T01:26:47.255313-08:00","closed_at":"2025-12-23T01:26:47.255313-08:00"} {"id":"bd-2c64","title":"Merge: ruby-1767142029451","description":"branch: polecat/ruby-1767142029451\ntarget: main\nsource_issue: ruby-1767142029451\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T17:00:14.136568-08:00","updated_at":"2025-12-30T18:12:30.96303-08:00","closed_at":"2025-12-30T18:11:07.842778-08:00","created_by":"beads/polecats/ruby"} {"id":"bd-2dwo","title":"Remove deprecated daemon logger function","description":"In cmd/bd/daemon_logger.go:131, there's a TODO to remove a deprecated function once all callers are updated to use the new signature. Need to audit callers and clean up.\n\nFile: cmd/bd/daemon_logger.go:131","status":"closed","priority":4,"issue_type":"chore","created_at":"2025-12-28T16:32:39.513622-08:00","updated_at":"2025-12-30T15:44:43.365401-08:00","closed_at":"2025-12-30T00:28:06.54315-08:00","close_reason":"Merged via refinery","created_by":"stevey"} -{"id":"bd-2ep8","title":"Update CHANGELOG.md with release notes","description":"Add meaningful release notes to CHANGELOG.md describing what changed in 0.30.7","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649053-08:00","updated_at":"2025-12-19T22:57:31.69559-08:00","closed_at":"2025-12-19T22:57:31.69559-08:00","dependencies":[{"issue_id":"bd-2ep8","depends_on_id":"bd-rupw","type":"blocks","created_at":"2025-12-19T22:56:48.651136-08:00","created_by":"stevey"},{"issue_id":"bd-2ep8","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.650816-08:00","created_by":"stevey"}]} +{"id":"bd-2ep8","title":"Update CHANGELOG.md with release notes","description":"Add meaningful release notes to CHANGELOG.md describing what changed in 0.30.7","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649053-08:00","updated_at":"2025-12-19T22:57:31.69559-08:00","closed_at":"2025-12-19T22:57:31.69559-08:00","dependencies":[{"issue_id":"bd-2ep8","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.650816-08:00","created_by":"stevey"},{"issue_id":"bd-2ep8","depends_on_id":"bd-rupw","type":"blocks","created_at":"2025-12-19T22:56:48.651136-08:00","created_by":"stevey"}]} {"id":"bd-2f0f","title":"Merge: obsidian-mjvtl03h","description":"branch: polecat/obsidian-mjvtl03h\ntarget: main\nsource_issue: obsidian-mjvtl03h\nrig: beads\nagent_bead: gt-beads-polecat-obsidian","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2026-01-01T11:12:56.221323-08:00","updated_at":"2026-01-01T15:48:48.262491-08:00","closed_at":"2026-01-01T15:48:48.262491-08:00","close_reason":"Branch already merged and deleted by previous refinery session","created_by":"beads/polecats/obsidian"} {"id":"bd-2fs7","title":"Move pour/ephemeral under bd mol subcommand","description":"For consistency, bd pour and bd ephemeral should become bd mol pour and bd mol ephemeral:\n\nCurrent:\n bd mol list # Available protos\n bd mol show \u003cid\u003e # Proto details\n bd pour \u003cproto\u003e # Create mol ← sticks out\n bd ephemeral \u003cproto\u003e # Create ephemeral ← sticks out \n bd mol bond \u003cproto\u003e \u003cparent\u003e # Attach to existing mol\n bd mol squash \u003cid\u003e # Condense to digest\n bd mol burn \u003cid\u003e # Discard\n\nProposed:\n bd mol list\n bd mol show \u003cid\u003e\n bd mol pour \u003cproto\u003e # Moved under mol\n bd mol ephemeral \u003cproto\u003e # Moved under mol\n bd mol bond \u003cproto\u003e \u003cparent\u003e\n bd mol squash \u003cid\u003e\n bd mol burn \u003cid\u003e\n\nAll molecule operations should be under bd mol for discoverability and consistency.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-26T23:36:23.945902-08:00","updated_at":"2025-12-26T23:41:01.096333-08:00","closed_at":"2025-12-26T23:41:01.096333-08:00","created_by":"stevey"} {"id":"bd-2gkg","title":"Fix path casing mismatch on macOS causing sync failures (GH#880)","description":"bd sync fails with exit status 128 when daemon started from terminal with different path casing than git worktree registry. macOS case-insensitive filesystem causes mismatch. Fix: normalize paths using realpath or canonical lowercase when daemon starts.","status":"closed","priority":2,"issue_type":"bug","created_at":"2026-01-04T16:09:19.727279-08:00","updated_at":"2026-01-04T16:11:30.968102-08:00","closed_at":"2026-01-04T16:11:30.968102-08:00","close_reason":"Fixed: use utils.PathsEqual() for case-insensitive path comparison in worktree validation","created_by":"beads/crew/emma"} @@ -75,7 +75,7 @@ {"id":"bd-2vh3","title":"Ephemeral issue cleanup and history compaction","description":"## Problem\n\nBeads history grows without bound. Every message, handoff, work assignment\nstays in issues.jsonl forever. Enterprise users will balk at \"git as database.\"\n\n## Solution: Two-Tier Cleanup\n\n### Tier 1: Ephemeral Cleanup (v1)\n\nbd cleanup --ephemeral --closed\n\n- Deletes closed issues where ephemeral=true from issues.jsonl\n- Safe: only removes explicitly marked ephemeral + closed\n- Preserves git history (commits still exist)\n- Run after swarm completion\n\n### Tier 2: History Compaction (v2)\n\nbd compact --squash\n\n- Rewrites issues.jsonl to remove tombstones\n- Optionally squashes git history (interactive rebase equivalent)\n- Preserves Merkle proofs for deleted items\n- Advanced: cold storage tiering\n\n## HOP Context\n\n| Layer | HOP Role | Persistence |\n|-------|----------|-------------|\n| Execution trace | None | Ephemeral |\n| Work scaffolding | None | Summarizable |\n| Work outcome | CV entry | Permanent |\n| Validation record | Stake proof | Permanent |\n\n\"Execution is ephemeral. Outcomes are permanent. You can't squash your CV.\"\n\n## Success Criteria\n\n- After cleanup --ephemeral: issues.jsonl only contains persistent work\n- Work outcomes preserved (CV entries)\n- Validation records preserved (stake proofs)\n- Execution scaffolding removed (transient coordination)","notes":"## Implementation Plan (REVISED after code review)\n\nSee history/EPHEMERAL_MOLECULES_DESIGN.md for comprehensive design + review.\n\n## Key Simplification\n\nAfter code review, Tier 1 is MUCH simpler than originally designed:\n\n- **Original**: Separate ephemeral repo with routing.ephemeral config\n- **Revised**: Just set Wisp: true in cloneSubgraph()\n\nThe wisp field and bd cleanup --wisp already exist\\!\n\n## Child Tasks (in dependency order)\n\n1. **bd-2vh3.2**: Tier 1 - Ephemeral spawning (SIMPLIFIED) [READY]\n - Just add Wisp: true to template.go:474\n - Add --persistent flag to opt out\n2. **bd-2vh3.3**: Tier 2 - Basic bd mol squash command\n3. **bd-2vh3.4**: Tier 3 - AI-powered squash summarization\n4. **bd-2vh3.5**: Tier 4 - Auto-squash on molecule completion\n5. **bd-2vh3.6**: Tier 5 - JSONL archive rotation (DEFERRED: post-1.0)\n\n## What Already Exists\n\n| Component | Location |\n|-----------|----------|\n| Ephemeral field | internal/types/types.go:45 |\n| bd cleanup --wisp | cmd/bd/cleanup.go:72 |\n| cloneSubgraph() | cmd/bd/template.go:456 |\n| loadTemplateSubgraph() | cmd/bd/template.go |\n\n## HOP Alignment\n\n'Execution is ephemeral. Outcomes are permanent. You can't squash your CV.'","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-12-20T21:02:20.101367-08:00","updated_at":"2025-12-21T17:50:02.958155-08:00","closed_at":"2025-12-21T17:50:02.958155-08:00"} {"id":"bd-2vh3.1","title":"Tier 1: Ephemeral repo routing","description":"Add routing.ephemeral config option to route ephemeral=true issues to separate location.\n\n## Changes Required\n\n1. Add `routing.ephemeral` config option (default: empty = disabled)\n2. Update routing logic in `determineRepo()` to check ephemeral flag\n3. Update `bd create` to respect ephemeral routing\n4. Update import/export for multi-location support\n5. Ephemeral repo can be:\n - Separate git repo (~/.beads-ephemeral)\n - Non-git directory (just filesystem)\n - Same repo, different branch (future)\n\n## Config\n\n```bash\nbd config set routing.ephemeral \"~/.beads-ephemeral\"\n```\n\n## Acceptance Criteria\n\n- `bd create \"test\" --ephemeral` creates in ephemeral repo when configured\n- `bd list` shows issues from both repos\n- Ephemeral repo never synced to remote","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-21T12:57:26.648052-08:00","updated_at":"2025-12-21T12:59:01.815357-08:00","deleted_at":"2025-12-21T12:59:01.815357-08:00","deleted_by":"stevey","delete_reason":"manual delete","original_type":"task"} {"id":"bd-2vh3.2","title":"Tier 1: Ephemeral repo routing","description":"Simplified: Make mol spawn set ephemeral=true on spawned issues.\n\n## The Fix\n\nModify cloneSubgraph() in template.go to set Ephemeral: true:\n\n```go\n// template.go:474\nnewIssue := \u0026types.Issue{\n Title: substituteVariables(oldIssue.Title, vars),\n // ... existing fields ...\n Ephemeral: true, // ADD THIS LINE\n}\n```\n\n## Optional: Add --persistent flag\n\nAdd flag to bd mol spawn for when you want spawned issues to persist:\n\n```bash\nbd mol spawn mol-code-review --var pr=123 # ephemeral (default)\nbd mol spawn mol-code-review --var pr=123 --persistent # not ephemeral\n```\n\n## Why This Is Simpler Than Original Design\n\nOriginal design proposed separate ephemeral repo routing. After code review:\n\n- Ephemeral field already exists in schema\n- bd cleanup --ephemeral already works\n- No new config needed\n- No multi-repo complexity\n\n## Acceptance Criteria\n\n- bd mol spawn creates issues with ephemeral=true\n- bd cleanup --ephemeral -f deletes them after closing\n- --persistent flag opts out of ephemeral\n- Existing molecules continue to work","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-21T12:57:36.661604-08:00","updated_at":"2025-12-21T13:43:22.990244-08:00","closed_at":"2025-12-21T13:43:22.990244-08:00","dependencies":[{"issue_id":"bd-2vh3.2","depends_on_id":"bd-2vh3","type":"parent-child","created_at":"2025-12-21T12:57:36.662118-08:00","created_by":"stevey"}]} -{"id":"bd-2vh3.3","title":"Tier 2: Basic bd mol squash command","description":"Add bd mol squash command for basic molecule execution compression.\n\n## Command\n\nbd mol squash \u003cmolecule-id\u003e [flags]\n --dry-run Preview what would be squashed\n --keep-children Don't delete ephemeral children after squash\n --json JSON output\n\n## Implementation\n\n1. Find all ephemeral children of molecule (parent-child deps)\n2. Concatenate child descriptions/notes into digest\n3. Create digest issue in main repo with:\n - Title: 'Molecule Execution Summary: \u003coriginal-title\u003e'\n - digest_of: [list of squashed child IDs]\n - ephemeral: false (digest is permanent)\n4. Delete ephemeral children (unless --keep-children)\n5. Link digest to parent work item\n\n## Schema Changes\n\nAdd to Issue struct:\n- SquashedAt *time.Time\n- SquashDigest string (ID of digest)\n- DigestOf []string (IDs of squashed children)\n\n## Acceptance Criteria\n\n- bd mol squash \u003cid\u003e creates digest, removes children\n- --dry-run shows preview\n- Digest has proper metadata linking","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-21T12:57:48.338114-08:00","updated_at":"2025-12-21T13:53:58.974433-08:00","closed_at":"2025-12-21T13:53:58.974433-08:00","dependencies":[{"issue_id":"bd-2vh3.3","depends_on_id":"bd-2vh3.2","type":"blocks","created_at":"2025-12-21T12:58:22.601321-08:00","created_by":"stevey"},{"issue_id":"bd-2vh3.3","depends_on_id":"bd-2vh3","type":"parent-child","created_at":"2025-12-21T12:57:48.338636-08:00","created_by":"stevey"}]} +{"id":"bd-2vh3.3","title":"Tier 2: Basic bd mol squash command","description":"Add bd mol squash command for basic molecule execution compression.\n\n## Command\n\nbd mol squash \u003cmolecule-id\u003e [flags]\n --dry-run Preview what would be squashed\n --keep-children Don't delete ephemeral children after squash\n --json JSON output\n\n## Implementation\n\n1. Find all ephemeral children of molecule (parent-child deps)\n2. Concatenate child descriptions/notes into digest\n3. Create digest issue in main repo with:\n - Title: 'Molecule Execution Summary: \u003coriginal-title\u003e'\n - digest_of: [list of squashed child IDs]\n - ephemeral: false (digest is permanent)\n4. Delete ephemeral children (unless --keep-children)\n5. Link digest to parent work item\n\n## Schema Changes\n\nAdd to Issue struct:\n- SquashedAt *time.Time\n- SquashDigest string (ID of digest)\n- DigestOf []string (IDs of squashed children)\n\n## Acceptance Criteria\n\n- bd mol squash \u003cid\u003e creates digest, removes children\n- --dry-run shows preview\n- Digest has proper metadata linking","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-21T12:57:48.338114-08:00","updated_at":"2025-12-21T13:53:58.974433-08:00","closed_at":"2025-12-21T13:53:58.974433-08:00","dependencies":[{"issue_id":"bd-2vh3.3","depends_on_id":"bd-2vh3","type":"parent-child","created_at":"2025-12-21T12:57:48.338636-08:00","created_by":"stevey"},{"issue_id":"bd-2vh3.3","depends_on_id":"bd-2vh3.2","type":"blocks","created_at":"2025-12-21T12:58:22.601321-08:00","created_by":"stevey"}]} {"id":"bd-2vh3.4","title":"Tier 3: AI-powered squash summarization","description":"## Design: Agent-Provided Summarization (Inversion of Control)\n\nbd is a tool FOR agents, not an agent itself. The calling agent provides\nthe summary; bd just stores it.\n\n### API\n\n```bash\n# Agent generates summary, passes to bd\nbd mol squash bd-xxx --summary \"Agent-generated summary here\"\n\n# Without --summary, falls back to basic concatenation\nbd mol squash bd-xxx\n```\n\n### Gas Town Integration Pattern\n\n```go\n// In polecat completion handler or witness\nraw := exec.Command(\"bd\", \"mol\", \"show\", molID, \"--json\").Output()\nsummary := callHaiku(buildSummaryPrompt(raw)) // agent's job\nexec.Command(\"bd\", \"mol\", \"squash\", molID, \"--summary\", summary).Run()\n```\n\n### Why This Design\n\n| Concern | bd's job | Agent's job |\n|---------|----------|-------------|\n| Store data | ✅ | |\n| Query data | ✅ | |\n| Generate summaries | | ✅ |\n| Call LLMs | | ✅ |\n| Manage API keys | | ✅ |\n\n### Implementation Status\n\n- [x] --summary flag added to bd mol squash\n- [x] Tests for agent-provided summary\n- [ ] Gas Town integration (separate task)\n\n### Acceptance Criteria\n\n- ✅ bd mol squash --summary uses provided text\n- ✅ Without --summary, falls back to concatenation\n- ✅ No LLM calls in bd itself","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-21T12:58:00.732749-08:00","updated_at":"2025-12-21T14:29:16.288713-08:00","closed_at":"2025-12-21T14:29:16.288713-08:00","dependencies":[{"issue_id":"bd-2vh3.4","depends_on_id":"bd-2vh3","type":"parent-child","created_at":"2025-12-21T12:58:00.733264-08:00","created_by":"stevey"},{"issue_id":"bd-2vh3.4","depends_on_id":"bd-2vh3.3","type":"blocks","created_at":"2025-12-21T12:58:22.698686-08:00","created_by":"stevey"}]} {"id":"bd-2vh3.5","title":"Tier 4: Auto-squash on molecule completion","description":"Automatically squash molecules when they reach terminal state.\n\n## Integration Points\n\n1. Hook into molecule completion handler\n2. Detect when all steps are done/failed\n3. Trigger squash automatically\n\n## Config\n\nbd config set mol.auto_squash true # Default: false\nbd config set mol.auto_squash_on_success true # Only on success\nbd config set mol.auto_squash_delay '5m' # Wait before squash\n\n## Implementation Options\n\n### Option A: Post-Completion Hook\nIn mol completion handler:\n- Check if auto_squash enabled\n- Call Squash() after terminal state\n\n### Option B: Git Hook\nIn .beads/hooks/post-commit:\n- bd mol squash --auto\n\n### Option C: Daemon Background Task\n- Daemon periodically checks for squashable molecules\n- Squashes in background\n\n## Acceptance Criteria\n\n- Completed molecules auto-squash without manual intervention\n- Configurable delay before squash\n- Option to squash only on success vs always\n- Works with both daemon and no-daemon modes","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-21T12:58:13.345577-08:00","updated_at":"2025-12-21T17:40:39.794527-08:00","closed_at":"2025-12-21T17:40:39.794527-08:00","dependencies":[{"issue_id":"bd-2vh3.5","depends_on_id":"bd-2vh3","type":"parent-child","created_at":"2025-12-21T12:58:13.346152-08:00","created_by":"stevey"},{"issue_id":"bd-2vh3.5","depends_on_id":"bd-2vh3.4","type":"blocks","created_at":"2025-12-21T12:58:22.797141-08:00","created_by":"stevey"}]} {"id":"bd-2vh3.6","title":"Tier 5 (Future): JSONL archive rotation","description":"Periodic rotation of issues.jsonl for long-running repos.\n\n## Design\n\n.beads/\n├── issues.jsonl # Current (hot)\n├── archive/\n│ ├── issues-2025-12.jsonl.gz # Archived (cold)\n│ └── ...\n└── index.jsonl # Merged index for queries\n\n## Commands\n\nbd archive rotate [flags]\n --older-than N Archive issues closed \u003e N days\n --compress Gzip archives\n --dry-run Preview\n\nbd archive list # Show archived periods\nbd archive restore \u003cperiod\u003e # Restore from archive\n\n## Config\n\nbd config set archive.enabled true\nbd config set archive.rotate_days 90\nbd config set archive.compress true\nbd config set archive.path '.beads/archive'\n\n## Considerations\n\n- Archives can be gitignored (local only) or committed (shared)\n- Query layer must check index, hydrate from archive\n- Cold storage tiering (S3/GCS) for enterprise\n- Merkle proofs preserved for audit\n\n## Priority\n\nThis is post-1.0 work. Current focus is on squash (removes ephemeral).\nArchive helps with long-term history but is less critical.","status":"open","priority":4,"issue_type":"feature","created_at":"2025-12-21T12:58:38.210008-08:00","updated_at":"2026-01-02T00:17:14.308269-08:00","dependencies":[{"issue_id":"bd-2vh3.6","depends_on_id":"bd-2vh3","type":"parent-child","created_at":"2025-12-21T12:58:38.210543-08:00","created_by":"stevey"}]} @@ -132,7 +132,7 @@ {"id":"bd-4ri","title":"Fix TestFallbackToDirectModeEnablesFlush deadlock causing 10min test timeout","description":"## Problem\n\nTestFallbackToDirectModeEnablesFlush in direct_mode_test.go deadlocks for 9m59s before timing out, causing the entire test suite to take 10+ minutes instead of \u003c10 seconds.\n\n## Root Cause\n\nDatabase lock contention between test cleanup and flushToJSONL():\n- Test cleanup (line 36) tries to close DB via defer\n- flushToJSONL() (line 132) is still accessing DB\n- Results in deadlock: database/sql.(*DB).Close() waits for mutex while GetJSONLFileHash() holds it\n\n## Stack Trace Evidence\n\n```\ngoroutine 512 [sync.Mutex.Lock, 9 minutes]:\ndatabase/sql.(*DB).Close(0x14000643790)\n .../database/sql/sql.go:927 +0x84\ngithub.com/steveyegge/beads/cmd/bd.TestFallbackToDirectModeEnablesFlush.func1()\n .../direct_mode_test.go:36 +0xf4\n\nWhile goroutine running flushToJSONL() holds DB connection via GetJSONLFileHash()\n```\n\n## Impact\n\n- Test suite: 10+ minutes → should be \u003c10 seconds\n- ALL other tests pass in ~4 seconds\n- This ONE test accounts for 99.9% of test runtime\n\n## Related\n\nThis is the EXACT same issue documented in MAIN_TEST_REFACTOR_NOTES.md for why main_test.go refactoring was deferred - global state manipulation + DB cleanup = deadlock.\n\n## Fix Approaches\n\n1. **Add proper cleanup sequencing** - stop flush goroutines BEFORE closing DB\n2. **Use test-specific DB lifecycle** - ensure flush completes before cleanup\n3. **Mock the flush mechanism** - avoid real DB for testing this code path \n4. **Add explicit timeout handling** - fail fast with clear error instead of hanging\n\n## Files\n\n- cmd/bd/direct_mode_test.go:36-132\n- cmd/bd/autoflush.go:353 (validateJSONLIntegrity)\n- cmd/bd/autoflush.go:508 (flushToJSONLWithState)\n\n## Acceptance\n\n- Test passes without timeout\n- Test suite completes in \u003c10 seconds\n- No deadlock between cleanup and flush operations","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-11-21T20:09:00.794372-05:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-4sfl","title":"Merge: bd-14ie","description":"branch: polecat/toast\ntarget: main\nsource_issue: bd-14ie\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-19T23:23:37.360782-08:00","updated_at":"2025-12-20T23:17:26.997276-08:00","closed_at":"2025-12-20T23:17:26.997276-08:00"} {"id":"bd-4sxh","title":"Code smell: Issue struct still has ~100 fields - consider composition","description":"internal/types/types.go Issue struct (lines 14-100) still has approximately 100 fields across many categories despite prior cleanup:\n\n- Core identification (ID, ContentHash)\n- Content (Title, Description, Design)\n- Status \u0026 Workflow\n- Assignment, Timestamps\n- External integration\n- Compaction metadata\n- Relational data (Labels, Dependencies, Comments)\n- Tombstone, Messaging, Context markers\n- Bonding, HOP, Gate, Source tracing, Agent identity fields\n\n**Problem:**\n- Very large struct is difficult to understand\n- Hard to identify required vs optional fields\n- High change risk\n\n**Acceptance Criteria:**\n- [ ] Group related fields into embedded structs (IssueMetadata, IssueCompaction, IssueAgent, etc.)\n- [ ] Use composition instead of single flat struct\n- [ ] Maintain backward compatibility for serialization\n- [ ] Tests pass","status":"hooked","priority":3,"issue_type":"chore","created_at":"2025-12-28T19:00:00.560267-08:00","updated_at":"2025-12-30T15:44:43.353922-08:00","created_by":"beads/crew/dave","dependencies":[{"issue_id":"bd-4sxh","depends_on_id":"bd-ox1o","type":"blocks","created_at":"2025-12-28T19:00:23.780801-08:00","created_by":"daemon"}]} -{"id":"bd-4uoc","title":"Code Review Followup Summary: PR #481 + PR #551","description":"## Merged PRs Summary\n\n### PR #551: Persist close_reason to issues table\n- ✅ Merged successfully\n- ✅ Bug fix: close_reason now persisted in database column (not just events table)\n- ✅ Comprehensive test coverage added\n- ✅ Handles reopen case (clearing close_reason)\n\n**Followup Issues Filed:**\n- bd-lxzx: Document close_reason in JSONL export format\n- bd-077e: Update CLI documentation for close_reason field\n\n---\n\n### PR #481: Context Engineering Optimizations (80-90% context reduction)\n- ✅ Merged successfully \n- ✅ Lazy tool discovery: discover_tools() + get_tool_info()\n- ✅ Minimal issue models: IssueMinimal (~80% smaller than full Issue)\n- ✅ Result compaction: Auto-compacts results \u003e20 items\n- ✅ All 28 tests passing\n- ⚠️ Breaking change: ready() and list() return type changed\n\n**Followup Issues Filed:**\n- bd-b318: Add integration tests for CompactedResult\n- bd-4u2b: Make compaction settings configurable (THRESHOLD, PREVIEW_COUNT)\n- bd-2kf8: Document CompactedResult response format in CONTEXT_ENGINEERING.md\n- bd-pdr2: Document backwards compatibility considerations\n\n---\n\n## Overall Assessment\n\nBoth PRs are production-ready with solid implementations. All critical functionality works and tests pass. Followup issues focus on:\n1. Documentation improvements (5 issues)\n2. Integration test coverage (1 issue)\n3. Configuration flexibility (1 issue)\n4. Backwards compatibility guidance (1 issue)\n\nNo critical bugs or design issues found.\n\n## Review Completed By\nCode review process completed. Issues auto-created for tracking improvements.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:59.214886-08:00","updated_at":"2025-12-29T13:40:29.723233-08:00","closed_at":"2025-12-29T13:40:29.723233-08:00","close_reason":"Stale/spurious - test artifacts, merged PRs, or auto-close candidates","dependencies":[{"issue_id":"bd-4uoc","depends_on_id":"bd-otf4","type":"discovered-from","created_at":"2025-12-14T14:25:59.216884-08:00","created_by":"stevey"},{"issue_id":"bd-4uoc","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:59.217296-08:00","created_by":"stevey"}]} +{"id":"bd-4uoc","title":"Code Review Followup Summary: PR #481 + PR #551","description":"## Merged PRs Summary\n\n### PR #551: Persist close_reason to issues table\n- ✅ Merged successfully\n- ✅ Bug fix: close_reason now persisted in database column (not just events table)\n- ✅ Comprehensive test coverage added\n- ✅ Handles reopen case (clearing close_reason)\n\n**Followup Issues Filed:**\n- bd-lxzx: Document close_reason in JSONL export format\n- bd-077e: Update CLI documentation for close_reason field\n\n---\n\n### PR #481: Context Engineering Optimizations (80-90% context reduction)\n- ✅ Merged successfully \n- ✅ Lazy tool discovery: discover_tools() + get_tool_info()\n- ✅ Minimal issue models: IssueMinimal (~80% smaller than full Issue)\n- ✅ Result compaction: Auto-compacts results \u003e20 items\n- ✅ All 28 tests passing\n- ⚠️ Breaking change: ready() and list() return type changed\n\n**Followup Issues Filed:**\n- bd-b318: Add integration tests for CompactedResult\n- bd-4u2b: Make compaction settings configurable (THRESHOLD, PREVIEW_COUNT)\n- bd-2kf8: Document CompactedResult response format in CONTEXT_ENGINEERING.md\n- bd-pdr2: Document backwards compatibility considerations\n\n---\n\n## Overall Assessment\n\nBoth PRs are production-ready with solid implementations. All critical functionality works and tests pass. Followup issues focus on:\n1. Documentation improvements (5 issues)\n2. Integration test coverage (1 issue)\n3. Configuration flexibility (1 issue)\n4. Backwards compatibility guidance (1 issue)\n\nNo critical bugs or design issues found.\n\n## Review Completed By\nCode review process completed. Issues auto-created for tracking improvements.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:59.214886-08:00","updated_at":"2025-12-29T13:40:29.723233-08:00","closed_at":"2025-12-29T13:40:29.723233-08:00","close_reason":"Stale/spurious - test artifacts, merged PRs, or auto-close candidates","dependencies":[{"issue_id":"bd-4uoc","depends_on_id":"bd-z86n","type":"discovered-from","created_at":"2025-12-14T14:25:59.217296-08:00","created_by":"stevey"},{"issue_id":"bd-4uoc","depends_on_id":"bd-otf4","type":"discovered-from","created_at":"2025-12-14T14:25:59.216884-08:00","created_by":"stevey"}]} {"id":"bd-4y4g","title":"Bump version in all files","description":"Run ./scripts/bump-version.sh {{version}} to update 10 version files. Then run with --commit after info.go is updated.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:01.859728-08:00","updated_at":"2025-12-24T16:25:30.160776-08:00","dependencies":[{"issue_id":"bd-4y4g","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.623724-08:00","created_by":"daemon"},{"issue_id":"bd-4y4g","depends_on_id":"bd-8v2","type":"blocks","created_at":"2025-12-18T22:43:20.823329-08:00","created_by":"daemon"}],"deleted_at":"2025-12-24T16:25:30.160776-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} {"id":"bd-5012","title":"Merge: ux-1766978911613","description":"branch: polecat/Nux-1766978911613\ntarget: main\nsource_issue: ux-1766978911613\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-28T19:35:42.938017-08:00","updated_at":"2025-12-29T13:40:29.719953-08:00","closed_at":"2025-12-29T13:40:29.719953-08:00","close_reason":"Stale/spurious - test artifacts, merged PRs, or auto-close candidates","created_by":"beads/polecats/Nux"} {"id":"bd-512v","title":"Verify release artifacts","description":"Check GitHub releases page - binaries for darwin/linux/windows should be available","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-21T13:52:33.067124-08:00","updated_at":"2025-12-21T13:53:49.35495-08:00","deleted_at":"2025-12-21T13:53:49.35495-08:00","deleted_by":"stevey","delete_reason":"manual delete","original_type":"task"} @@ -208,7 +208,7 @@ {"id":"bd-7p5l","title":"Fix N+1 query pattern in swarm status blocked check","description":"In getSwarmStatus, when checking if an issue is blocked, we query each dependency individually with GetIssue. With 100 issues and 5 deps each, thats 500 extra queries. Fix: Build a status map upfront from the already-fetched childIssues slice. File: cmd/bd/swarm.go:706-710","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-28T21:31:07.586335-08:00","updated_at":"2025-12-28T21:35:30.605065-08:00","closed_at":"2025-12-28T21:35:30.605065-08:00","created_by":"beads/crew/emma","dependencies":[{"issue_id":"bd-7p5l","depends_on_id":"bd-m6r3","type":"blocks","created_at":"2025-12-28T21:31:17.309538-08:00","created_by":"daemon"}]} {"id":"bd-7pwh","title":"HOP-compatible schema additions","description":"Add optional fields to Beads schema to enable future HOP integration.\nAll fields are backwards-compatible (optional, omitted if empty).\n\n## Reference\nSee ~/gt/docs/hop/BEADS-SCHEMA-CHANGES.md for full specification.\n\n## P1 Changes (Must Have Before Launch)\n\n### 1. EntityRef type\nStructured entity reference that can become HOP URI:\n```go\ntype EntityRef struct {\n Name string // \"polecat/Nux\"\n Platform string // \"gastown\"\n Org string // \"steveyegge\" \n ID string // \"polecat-nux\"\n}\n```\n\n### 2. creator field\nEvery issue tracks who created it (EntityRef).\n\n### 3. assignee_ref field\nStructured form alongside existing string assignee.\n\n### 4. validations array\nTrack who validated work completion:\n```go\ntype Validation struct {\n Validator *EntityRef\n Outcome string // accepted, rejected, revision_requested\n Timestamp time.Time\n Score *float32 // Future\n}\n```\n\n## P2 Changes (Should Have)\n\n### 5. work_type field\n\"mutex\" (default) or \"open_competition\"\n\n### 6. crystallizes field\nBoolean - does this work compound (true) or evaporate (false)?\n\n### 7. cross_refs field\nArray of URIs to beads in other repos:\n- \"beads://github/anthropics/claude-code/bd-xyz\"\n\n## P3 Changes (Nice to Have)\n\n### 8. skill_vector placeholder\nReserved for future embeddings: []float32\n\n## Implementation Notes\n- All fields optional in JSONL serialization\n- Empty/null fields omit from output\n- No migration needed for existing data\n- CLI additions: --creator, --validated-by filters","notes":"Scope reduced after review. P1 only: EntityRef type, creator field, validations array. Deferred: assignee_ref, work_type, crystallizes, cross_refs, skill_vector (YAGNI - semantics unclear, can add later when needed).","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-22T02:42:39.267984-08:00","updated_at":"2025-12-22T20:09:09.211821-08:00","closed_at":"2025-12-22T20:09:09.211821-08:00"} {"id":"bd-7t9a","title":"MCP plugin: _find_beads_db_in_tree() should follow .beads/redirect files","description":"## Problem\nThe `_find_beads_db_in_tree()` function in `integrations/beads-mcp/src/beads_mcp/tools.py` does not follow `.beads/redirect` files.\n\n## Impact\nMCP beads tools fail from polecat/crew directories that use redirect files to share a beads database.\n\n## Root Cause\nWhen auto-detecting workspace, the MCP plugin looks for `.beads/*.db` files directly but doesn't check for or follow `redirect` files:\n\n```python\nbeads_dir = os.path.join(current, '.beads')\nif os.path.isdir(beads_dir):\n db_files = glob.glob(os.path.join(beads_dir, '*.db')) # Only looks for .db files\n valid_dbs = [f for f in db_files if '.backup' not in os.path.basename(f)]\n if valid_dbs:\n return current\n```\n\nPolecat directories have `.beads/redirect` files (e.g., containing `../../mayor/rig/.beads`) but no `.db` files, so `_find_beads_db_in_tree()` doesn't find them.\n\n## Expected Behavior\nThe function should:\n1. Check for `.beads/redirect` file first\n2. If found, follow the redirect to the actual beads location\n3. Verify the redirected location has a valid database\n\n## Reference\nThe Go implementation handles this correctly in `ResolveBeadsDir()` - see gastown `internal/beads/beads.go:23-60`.\n\n## Related\n- gt-tnw: MCP beads tools fail from polecat directories","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-29T23:57:21.710278-08:00","updated_at":"2025-12-30T00:05:38.307967-08:00","closed_at":"2025-12-30T00:05:38.307967-08:00","close_reason":"Fixed: added _resolve_beads_redirect() to follow .beads/redirect files in MCP plugin auto-detection","created_by":"gastown/polecats/capable"} -{"id":"bd-7tuu","title":"Commit and push release","description":"git add -A \u0026\u0026 git commit \u0026\u0026 git push to trigger CI","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:02.053382-08:00","updated_at":"2025-12-20T01:23:52.484043-08:00","closed_at":"2025-12-20T01:23:52.484043-08:00","dependencies":[{"issue_id":"bd-7tuu","depends_on_id":"bd-hw3w","type":"blocks","created_at":"2025-12-19T22:56:23.291591-08:00","created_by":"daemon"},{"issue_id":"bd-7tuu","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.021087-08:00","created_by":"daemon"}]} +{"id":"bd-7tuu","title":"Commit and push release","description":"git add -A \u0026\u0026 git commit \u0026\u0026 git push to trigger CI","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:02.053382-08:00","updated_at":"2025-12-20T01:23:52.484043-08:00","closed_at":"2025-12-20T01:23:52.484043-08:00","dependencies":[{"issue_id":"bd-7tuu","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.021087-08:00","created_by":"daemon"},{"issue_id":"bd-7tuu","depends_on_id":"bd-hw3w","type":"blocks","created_at":"2025-12-19T22:56:23.291591-08:00","created_by":"daemon"}]} {"id":"bd-7wrh","title":"Merge: jasper-1767083473604","description":"branch: polecat/jasper-1767083473604\ntarget: main\nsource_issue: jasper-1767083473604\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T00:39:04.84733-08:00","updated_at":"2025-12-30T00:54:58.805495-08:00","closed_at":"2025-12-30T00:54:58.805495-08:00","close_reason":"Branch polecat/jasper-1767083473604 no longer exists on remote","created_by":"beads/polecats/jasper"} {"id":"bd-7xrg","title":"Refinery Patrol","description":"Merge queue processor patrol loop with verification gates.","status":"closed","priority":2,"issue_type":"molecule","created_at":"2025-12-27T18:14:31.190713-08:00","updated_at":"2025-12-30T18:12:30.974709-08:00","closed_at":"2025-12-30T18:11:14.234636-08:00"} {"id":"bd-7yg","title":"Git merge driver uses invalid placeholders (%L, %R instead of %A, %B)","description":"## Problem\n\nThe beads git merge driver is configured with invalid Git placeholders:\n\n```\ngit config merge.beads.driver \"bd merge %A %O %L %R\"\n```\n\nGit doesn't recognize `%L` or `%R` as valid merge driver placeholders. The valid placeholders are:\n- `%O` = base (common ancestor)\n- `%A` = current version (ours)\n- `%B` = other version (theirs)\n\n## Impact\n\n- Affects ALL users when they have `.beads/beads.jsonl` merge conflicts\n- Automatic JSONL merge fails with error: \"error reading left file: failed to open file: open 7: no such file or directory\"\n- Users must manually resolve conflicts instead of getting automatic merge\n\n## Root Cause\n\nThe `bd init` command (or wherever the merge driver is configured) is using non-standard placeholders. When Git encounters `%L` and `%R`, it either passes them literally or interprets them incorrectly.\n\n## Fix\n\nUpdate the merge driver configuration to:\n```\ngit config merge.beads.driver \"bd merge %A %O %A %B\"\n```\n\nWhere:\n- 1st `%A` = output file (current file, will be overwritten)\n- `%O` = base (common ancestor)\n- 2nd `%A` = left/current version\n- `%B` = right/other version\n\n## Action Items\n\n1. Fix `bd init` (or equivalent setup command) to use correct placeholders\n2. Add migration/warning for existing users with misconfigured merge driver\n3. Update documentation with correct merge driver setup\n4. Consider adding validation when `bd init` is run","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-11-21T19:51:55.747608-05:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} @@ -239,7 +239,7 @@ {"id":"bd-8zbo","title":"Code smell: runCook function is ~275 lines","description":"attached_args: Refactor runCook function (~275 lines)\n\nThe runCook() function in cmd/bd/cook.go (lines 83-357) is ~275 lines handling:\n\n1. Flag parsing and validation\n2. Mode determination (compile vs runtime)\n3. Formula parsing and resolution\n4. Control flow, advice, and expansion application\n5. Dry-run output\n6. Ephemeral mode JSON output\n7. Persist mode database operations\n8. Result display\n\nConsider extracting:\n- parseAndValidateFlags() - flag handling\n- loadAndResolveFormula() - parse, resolve, apply transformations\n- outputDryRun() - dry run display logic\n- outputEphemeral() - ephemeral JSON output\n- persistFormula() - database persistence logic\n\nThe function has multiple exit points and nested conditionals that make it hard to follow.\n\nLocation: cmd/bd/cook.go:83-357","status":"closed","priority":3,"issue_type":"chore","created_at":"2025-12-28T15:33:08.808191-08:00","updated_at":"2025-12-28T16:37:29.397832-08:00","closed_at":"2025-12-28T16:37:29.397832-08:00","created_by":"beads/crew/dave","dependencies":[{"issue_id":"bd-8zbo","depends_on_id":"bd-784c","type":"parent-child","created_at":"2025-12-28T15:38:04.25998-08:00","created_by":"daemon"}]} {"id":"bd-90fs","title":"Merge: amber-1767138546434","description":"branch: polecat/amber-1767138546434\ntarget: main\nsource_issue: amber-1767138546434\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T15:57:38.681293-08:00","updated_at":"2025-12-30T18:12:30.966277-08:00","closed_at":"2025-12-30T18:11:08.005131-08:00","created_by":"beads/polecats/amber"} {"id":"bd-90v","title":"bd prime: AI context loading and Claude Code integration","description":"Implement `bd prime` command and Claude Code hooks for context recovery. Hooks work with BOTH MCP server and CLI approaches - they solve the context memory problem (keeping bd workflow fresh after compaction) not the tool access problem (MCP vs CLI).","status":"closed","priority":2,"issue_type":"epic","created_at":"2025-11-11T23:31:12.119012-08:00","updated_at":"2025-12-25T22:26:54.442614-08:00","closed_at":"2025-12-25T22:26:54.442614-08:00"} -{"id":"bd-9115","title":"CLI cleanup: Consolidate bd top-level commands","description":"## Problem\nbd has 76 top-level commands, making it hard to discover and remember.\n\n## Proposed Changes\n\n### Remove from top-level (nest instead):\n- `bd cook` → `bd formula cook` (cooking is a formula operation)\n- `bd pin` → already covered by `bd mol` commands\n- `bd thanks` → `bd info --thanks` or just README\n- `bd quickstart` → `bd help quickstart` or docs\n- `bd detect-pollution` → `bd doctor --check=pollution`\n\n### Consolidate migrations under `bd migrate`:\n- `bd migrate-hash-ids` → `bd migrate hash-ids`\n- `bd migrate-issues` → `bd migrate issues`\n- `bd migrate-sync` → `bd migrate sync`\n- `bd migrate-tombstones` → `bd migrate tombstones`\n\n### Consolidate admin under `bd admin`:\n- `bd cleanup` → `bd admin cleanup`\n- `bd compact` → `bd admin compact`\n- `bd reset` → `bd admin reset`\n\n## Backwards Compatibility\nKeep old commands as hidden aliases for one release cycle.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-27T14:28:03.299469-08:00","updated_at":"2025-12-27T16:19:44.580326-08:00","closed_at":"2025-12-27T16:19:44.580326-08:00","created_by":"mayor","dependencies":[{"issue_id":"bd-9115","depends_on_id":"bd-kff0","type":"blocks","created_at":"2025-12-27T15:11:45.027177-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-bxqv","type":"blocks","created_at":"2025-12-27T15:11:45.051629-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-5e9q","type":"blocks","created_at":"2025-12-27T15:11:45.07537-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-w3z7","type":"blocks","created_at":"2025-12-27T15:11:44.88081-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-3u8m","type":"blocks","created_at":"2025-12-27T15:11:44.929207-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-x0zl","type":"blocks","created_at":"2025-12-27T15:11:44.953799-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-wb9g","type":"blocks","created_at":"2025-12-27T15:11:44.977559-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-do8e","type":"blocks","created_at":"2025-12-27T15:11:44.905058-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-twbi","type":"blocks","created_at":"2025-12-27T15:11:45.002403-08:00","created_by":"daemon"}]} +{"id":"bd-9115","title":"CLI cleanup: Consolidate bd top-level commands","description":"## Problem\nbd has 76 top-level commands, making it hard to discover and remember.\n\n## Proposed Changes\n\n### Remove from top-level (nest instead):\n- `bd cook` → `bd formula cook` (cooking is a formula operation)\n- `bd pin` → already covered by `bd mol` commands\n- `bd thanks` → `bd info --thanks` or just README\n- `bd quickstart` → `bd help quickstart` or docs\n- `bd detect-pollution` → `bd doctor --check=pollution`\n\n### Consolidate migrations under `bd migrate`:\n- `bd migrate-hash-ids` → `bd migrate hash-ids`\n- `bd migrate-issues` → `bd migrate issues`\n- `bd migrate-sync` → `bd migrate sync`\n- `bd migrate-tombstones` → `bd migrate tombstones`\n\n### Consolidate admin under `bd admin`:\n- `bd cleanup` → `bd admin cleanup`\n- `bd compact` → `bd admin compact`\n- `bd reset` → `bd admin reset`\n\n## Backwards Compatibility\nKeep old commands as hidden aliases for one release cycle.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-27T14:28:03.299469-08:00","updated_at":"2025-12-27T16:19:44.580326-08:00","closed_at":"2025-12-27T16:19:44.580326-08:00","created_by":"mayor","dependencies":[{"issue_id":"bd-9115","depends_on_id":"bd-5e9q","type":"blocks","created_at":"2025-12-27T15:11:45.07537-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-w3z7","type":"blocks","created_at":"2025-12-27T15:11:44.88081-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-do8e","type":"blocks","created_at":"2025-12-27T15:11:44.905058-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-x0zl","type":"blocks","created_at":"2025-12-27T15:11:44.953799-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-kff0","type":"blocks","created_at":"2025-12-27T15:11:45.027177-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-3u8m","type":"blocks","created_at":"2025-12-27T15:11:44.929207-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-twbi","type":"blocks","created_at":"2025-12-27T15:11:45.002403-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-bxqv","type":"blocks","created_at":"2025-12-27T15:11:45.051629-08:00","created_by":"daemon"},{"issue_id":"bd-9115","depends_on_id":"bd-wb9g","type":"blocks","created_at":"2025-12-27T15:11:44.977559-08:00","created_by":"daemon"}]} {"id":"bd-95k8","title":"Pinned field available in beads v0.37.0","description":"Hey max,\n\nHeads up on your mail overhaul work:\n\n1. **Pinned field is available** - beads v0.37.0 (released by dave earlier) includes the pinned field on issues. You'll want to add this to BeadsMessage in types.go.\n\n2. **Database migration** - Check if existing .beads databases need migration to support the pinned field. Run `bd doctor` to see if it flags anything.\n\n3. **Sorting task** - Once you have the pinned field, gt-ngu1 (pinned beads first in mail inbox) needs implementing. Since messages now come from `bd list --type=message`, you'll need to either:\n - Sort in listBeads() after fetching, or\n - Ensure bd list returns pinned items first (may already do this?)\n\nCheck what version of bd you're building against.\n\n-- Mayor","status":"closed","priority":2,"issue_type":"message","created_at":"2025-12-20T17:51:57.315956-08:00","updated_at":"2025-12-21T17:52:18.542169-08:00","closed_at":"2025-12-21T17:52:18.542169-08:00"} {"id":"bd-987a","title":"bd mol run: panic slice bounds out of range in mol_run.go:130","description":"## Problem\nbd mol run panics after successfully creating the molecule:\n\n```\n✓ Molecule running: created 9 issues\n Root issue: gt-i4lo (pinned, in_progress)\n Assignee: stevey\n\nNext steps:\n bd ready # Find unblocked work in this molecule\npanic: runtime error: slice bounds out of range [:8] with length 7\n\ngoroutine 1 [running]:\nmain.runMolRun(0x1014fc0c0, {0x140001e0f80, 0x1, 0x10089daad?})\n /Users/stevey/gt/beads/crew/dave/cmd/bd/mol_run.go:130 +0xc38\n```\n\n## Reproduction\n```bash\nbd --no-daemon mol run gt-lwuu --var issue=gt-test123\n```\nWhere gt-lwuu is a mol-polecat-work proto with 8 child steps.\n\n## Impact\nThe molecule IS created successfully - the panic happens after creation when formatting the \"Next steps\" output.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-21T21:48:55.396018-08:00","updated_at":"2025-12-21T22:57:46.827469-08:00","closed_at":"2025-12-21T22:57:46.827469-08:00"} {"id":"bd-98b4","title":"Merge: onyx-1767138516448","description":"branch: polecat/onyx-1767138516448\ntarget: main\nsource_issue: onyx-1767138516448\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T16:17:51.539362-08:00","updated_at":"2025-12-30T18:12:30.974128-08:00","closed_at":"2025-12-30T18:11:07.907737-08:00","created_by":"beads/polecats/onyx"} @@ -279,7 +279,7 @@ {"id":"bd-aq3s","title":"Merge: bd-u2sc.3","description":"branch: polecat/Modular\ntarget: main\nsource_issue: bd-u2sc.3\nrig: beads","status":"closed","priority":3,"issue_type":"merge-request","created_at":"2025-12-23T13:47:14.281479-08:00","updated_at":"2025-12-23T19:12:08.354548-08:00","closed_at":"2025-12-23T19:12:08.354548-08:00"} {"id":"bd-au0","title":"Command Set Standardization \u0026 Flag Consistency","description":"Comprehensive improvements to bd command set based on 2025 audit findings.\n\n## Background\nSee docs/command-audit-2025.md for detailed analysis.\n\n## Goals\n1. Standardize flag naming and behavior across all commands\n2. Add missing flags for feature parity\n3. Fix naming confusion\n4. Improve consistency in JSON output\n\n## Success Criteria\n- All mutating commands support --dry-run (no --preview variants)\n- bd update supports label operations\n- bd search has filter parity with bd list\n- Priority flags accept both int and P0-P4 format everywhere\n- JSON output is consistent across all commands","status":"closed","priority":2,"issue_type":"epic","created_at":"2025-11-21T21:05:55.672749-05:00","updated_at":"2025-12-25T22:34:51.78882-08:00","closed_at":"2025-12-25T22:34:51.78882-08:00"} {"id":"bd-au0.10","title":"Add global verbosity flags (--verbose, --quiet)","description":"Add consistent verbosity controls across all commands.\n\n**Current state:**\n- bd init has --quiet flag\n- No other commands have verbosity controls\n- Debug output controlled by BD_VERBOSE env var\n\n**Proposal:**\nAdd persistent flags:\n- --verbose / -v: Enable debug output\n- --quiet / -q: Suppress non-essential output\n\n**Implementation:**\n- Add to rootCmd.PersistentFlags()\n- Replace BD_VERBOSE checks with flag checks\n- Standardize output levels:\n * Quiet: Errors only\n * Normal: Errors + success messages\n * Verbose: Errors + success + debug info\n\n**Files to modify:**\n- cmd/bd/main.go (add flags)\n- internal/debug/debug.go (respect flags)\n- Update all commands to respect quiet mode\n\n**Testing:**\n- Verify --verbose shows debug output\n- Verify --quiet suppresses normal output\n- Ensure errors always show regardless of mode","status":"closed","priority":3,"issue_type":"task","created_at":"2025-11-21T21:08:21.600209-05:00","updated_at":"2025-12-25T22:34:40.197801-08:00","closed_at":"2025-12-25T22:34:40.197801-08:00","dependencies":[{"issue_id":"bd-au0.10","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:08:21.602557-05:00","created_by":"daemon"}]} -{"id":"bd-au0.5","title":"Add date and priority filters to bd search","description":"Add date and priority filters to bd search for parity with bd list.\n\n## Current State\nbd search supports: --status, --type, --assignee, --label, --limit\nbd list supports: all of the above PLUS date ranges and priority filters\n\n## Filters to Add\n\n### Priority Filters\n```bash\nbd search \"query\" --priority 1 # Exact priority\nbd search \"query\" --priority-min 0 # P0 and above (higher priority)\nbd search \"query\" --priority-max 2 # P2 and below (lower priority)\n```\n\n### Date Filters\n```bash\nbd search \"query\" --created-after 2025-01-01\nbd search \"query\" --created-before 2025-12-31\nbd search \"query\" --updated-after 2025-01-01\nbd search \"query\" --closed-after 2025-01-01\n```\n\n### Content Filters\n```bash\nbd search \"query\" --desc-contains \"bug\"\nbd search \"query\" --notes-contains \"todo\"\nbd search \"query\" --empty-description # Issues with no description\nbd search \"query\" --no-assignee # Unassigned issues\nbd search \"query\" --no-labels # Issues without labels\n```\n\n## Files to Modify\n\n### 1. cmd/bd/search.go\nAdd flag definitions in init():\n```go\nsearchCmd.Flags().IntP(\"priority\", \"p\", -1, \"Filter by exact priority (0-4)\")\nsearchCmd.Flags().Int(\"priority-min\", -1, \"Filter by minimum priority\")\nsearchCmd.Flags().Int(\"priority-max\", -1, \"Filter by maximum priority\")\nsearchCmd.Flags().String(\"created-after\", \"\", \"Filter by creation date (YYYY-MM-DD)\")\nsearchCmd.Flags().String(\"created-before\", \"\", \"Filter by creation date\")\nsearchCmd.Flags().String(\"updated-after\", \"\", \"Filter by update date\")\nsearchCmd.Flags().String(\"updated-before\", \"\", \"Filter by update date\")\nsearchCmd.Flags().String(\"closed-after\", \"\", \"Filter by close date\")\nsearchCmd.Flags().String(\"closed-before\", \"\", \"Filter by close date\")\nsearchCmd.Flags().String(\"desc-contains\", \"\", \"Filter by description content\")\nsearchCmd.Flags().String(\"notes-contains\", \"\", \"Filter by notes content\")\nsearchCmd.Flags().Bool(\"empty-description\", false, \"Filter issues with empty description\")\nsearchCmd.Flags().Bool(\"no-assignee\", false, \"Filter unassigned issues\")\nsearchCmd.Flags().Bool(\"no-labels\", false, \"Filter issues without labels\")\n```\n\n### 2. internal/rpc/protocol.go\nUpdate SearchArgs struct:\n```go\ntype SearchArgs struct {\n Query string\n Filter types.IssueFilter\n // Already has most fields via IssueFilter\n}\n```\n\nNote: types.IssueFilter already has these fields - just need to wire them up!\n\n### 3. cmd/bd/search.go Run function\nParse flags and populate filter:\n```go\nif priority, _ := cmd.Flags().GetInt(\"priority\"); priority \u003e= 0 {\n filter.Priority = \u0026priority\n}\nif createdAfter, _ := cmd.Flags().GetString(\"created-after\"); createdAfter != \"\" {\n t, err := time.Parse(\"2006-01-02\", createdAfter)\n if err != nil {\n FatalError(\"invalid date format for --created-after: %v\", err)\n }\n filter.CreatedAfter = \u0026t\n}\n// ... similar for other flags\n```\n\n## Implementation Steps\n\n1. **Check types.IssueFilter** - verify all needed fields exist\n2. **Add flags to search.go** init()\n3. **Parse flags** in Run function\n4. **Pass to SearchIssues** via filter\n5. **Test all combinations**\n\n## Testing\n```bash\n# Create test issues\nbd create \"Test P1\" -p 1\nbd create \"Test P2\" -p 2 --description \"Has description\"\n\n# Test filters\nbd search \"\" --priority 1\nbd search \"\" --priority-min 0 --priority-max 1\nbd search \"\" --empty-description\nbd search \"\" --desc-contains \"description\"\n```\n\n## Success Criteria\n- All filters work in both direct and daemon mode\n- Date parsing handles YYYY-MM-DD format\n- --json output includes filtered results\n- Help text documents all new flags","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-21T21:07:05.496726-05:00","updated_at":"2025-12-23T13:38:28.475606-08:00","closed_at":"2025-12-23T13:38:28.475606-08:00","dependencies":[{"issue_id":"bd-au0.5","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:05.497762-05:00","created_by":"daemon"},{"issue_id":"bd-au0.5","depends_on_id":"bd-iz5t","type":"parent-child","created_at":"2025-12-23T12:44:07.657303-08:00","created_by":"daemon"}]} +{"id":"bd-au0.5","title":"Add date and priority filters to bd search","description":"Add date and priority filters to bd search for parity with bd list.\n\n## Current State\nbd search supports: --status, --type, --assignee, --label, --limit\nbd list supports: all of the above PLUS date ranges and priority filters\n\n## Filters to Add\n\n### Priority Filters\n```bash\nbd search \"query\" --priority 1 # Exact priority\nbd search \"query\" --priority-min 0 # P0 and above (higher priority)\nbd search \"query\" --priority-max 2 # P2 and below (lower priority)\n```\n\n### Date Filters\n```bash\nbd search \"query\" --created-after 2025-01-01\nbd search \"query\" --created-before 2025-12-31\nbd search \"query\" --updated-after 2025-01-01\nbd search \"query\" --closed-after 2025-01-01\n```\n\n### Content Filters\n```bash\nbd search \"query\" --desc-contains \"bug\"\nbd search \"query\" --notes-contains \"todo\"\nbd search \"query\" --empty-description # Issues with no description\nbd search \"query\" --no-assignee # Unassigned issues\nbd search \"query\" --no-labels # Issues without labels\n```\n\n## Files to Modify\n\n### 1. cmd/bd/search.go\nAdd flag definitions in init():\n```go\nsearchCmd.Flags().IntP(\"priority\", \"p\", -1, \"Filter by exact priority (0-4)\")\nsearchCmd.Flags().Int(\"priority-min\", -1, \"Filter by minimum priority\")\nsearchCmd.Flags().Int(\"priority-max\", -1, \"Filter by maximum priority\")\nsearchCmd.Flags().String(\"created-after\", \"\", \"Filter by creation date (YYYY-MM-DD)\")\nsearchCmd.Flags().String(\"created-before\", \"\", \"Filter by creation date\")\nsearchCmd.Flags().String(\"updated-after\", \"\", \"Filter by update date\")\nsearchCmd.Flags().String(\"updated-before\", \"\", \"Filter by update date\")\nsearchCmd.Flags().String(\"closed-after\", \"\", \"Filter by close date\")\nsearchCmd.Flags().String(\"closed-before\", \"\", \"Filter by close date\")\nsearchCmd.Flags().String(\"desc-contains\", \"\", \"Filter by description content\")\nsearchCmd.Flags().String(\"notes-contains\", \"\", \"Filter by notes content\")\nsearchCmd.Flags().Bool(\"empty-description\", false, \"Filter issues with empty description\")\nsearchCmd.Flags().Bool(\"no-assignee\", false, \"Filter unassigned issues\")\nsearchCmd.Flags().Bool(\"no-labels\", false, \"Filter issues without labels\")\n```\n\n### 2. internal/rpc/protocol.go\nUpdate SearchArgs struct:\n```go\ntype SearchArgs struct {\n Query string\n Filter types.IssueFilter\n // Already has most fields via IssueFilter\n}\n```\n\nNote: types.IssueFilter already has these fields - just need to wire them up!\n\n### 3. cmd/bd/search.go Run function\nParse flags and populate filter:\n```go\nif priority, _ := cmd.Flags().GetInt(\"priority\"); priority \u003e= 0 {\n filter.Priority = \u0026priority\n}\nif createdAfter, _ := cmd.Flags().GetString(\"created-after\"); createdAfter != \"\" {\n t, err := time.Parse(\"2006-01-02\", createdAfter)\n if err != nil {\n FatalError(\"invalid date format for --created-after: %v\", err)\n }\n filter.CreatedAfter = \u0026t\n}\n// ... similar for other flags\n```\n\n## Implementation Steps\n\n1. **Check types.IssueFilter** - verify all needed fields exist\n2. **Add flags to search.go** init()\n3. **Parse flags** in Run function\n4. **Pass to SearchIssues** via filter\n5. **Test all combinations**\n\n## Testing\n```bash\n# Create test issues\nbd create \"Test P1\" -p 1\nbd create \"Test P2\" -p 2 --description \"Has description\"\n\n# Test filters\nbd search \"\" --priority 1\nbd search \"\" --priority-min 0 --priority-max 1\nbd search \"\" --empty-description\nbd search \"\" --desc-contains \"description\"\n```\n\n## Success Criteria\n- All filters work in both direct and daemon mode\n- Date parsing handles YYYY-MM-DD format\n- --json output includes filtered results\n- Help text documents all new flags","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-21T21:07:05.496726-05:00","updated_at":"2025-12-23T13:38:28.475606-08:00","closed_at":"2025-12-23T13:38:28.475606-08:00","dependencies":[{"issue_id":"bd-au0.5","depends_on_id":"bd-iz5t","type":"parent-child","created_at":"2025-12-23T12:44:07.657303-08:00","created_by":"daemon"},{"issue_id":"bd-au0.5","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:05.497762-05:00","created_by":"daemon"}]} {"id":"bd-au0.6","title":"Add comprehensive filters to bd export","description":"Enhance bd export with filtering options for selective exports.\n\n**Currently only has:**\n- --status\n\n**Add filters:**\n- --label, --label-any\n- --assignee\n- --type\n- --priority, --priority-min, --priority-max\n- --created-after, --created-before\n- --updated-after, --updated-before\n\n**Use case:**\n- Export only open issues: bd export --status open\n- Export high-priority bugs: bd export --type bug --priority-max 1\n- Export recent issues: bd export --created-after 2025-01-01\n\n**Files to modify:**\n- cmd/bd/export.go\n- Reuse filter logic from list.go","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-21T21:07:19.431307-05:00","updated_at":"2025-12-23T23:44:45.602324-08:00","closed_at":"2025-12-23T23:44:45.602324-08:00","dependencies":[{"issue_id":"bd-au0.6","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:19.432983-05:00","created_by":"daemon"}]} {"id":"bd-au0.7","title":"Audit and standardize JSON output across all commands","description":"Ensure consistent JSON format and error handling when --json flag is used.\n\n**Scope:**\n1. Verify all commands respect --json flag\n2. Standardize success response format\n3. Standardize error response format\n4. Document JSON schemas\n\n**Commands to audit:**\n- Core CRUD: create, update, delete, show, list, search ✓\n- Queries: ready, blocked, stale, count, stats, status\n- Deps: dep add/remove/tree/cycles\n- Labels: label commands\n- Comments: comments add/list/delete\n- Epics: epic status/close-eligible\n- Export/import: already support --json ✓\n\n**Testing:**\n- Success cases return valid JSON\n- Error cases return valid JSON (not plain text)\n- Consistent field naming (snake_case vs camelCase)\n- Array vs object wrapping consistency","notes":"## Audit Complete (2025-12-25)\n\n### Findings\n\n**✓ All commands support --json flag**\n- Query commands: ready, blocked, stale, count, stats, status\n- Dep commands: add, remove, tree, cycles \n- Label commands: add, remove, list, list-all\n- Comments: list, add\n- Epic: status, close-eligible\n\n**✓ Field naming is consistent**\n- All fields use snake_case: created_at, issue_type, dependency_count, etc.\n\n**✗ Error output is INCONSISTENT**\n- Only bd show uses FatalErrorRespectJSON (returns JSON errors)\n- All other commands use fmt.Fprintf(os.Stderr, ...) (returns plain text)\n\n### Files needing fixes\n\n| File | stderr writes | Commands |\n|------|---------------|----------|\n| show.go | 51 | update, close, edit |\n| dep.go | 41 | dep add/remove/tree/cycles |\n| label.go | 19 | label add/remove/list |\n| comments.go | ~10 | comments add/list |\n| epic.go | ~5 | epic status/close-eligible |\n\n### Follow-up\n\nCreated epic bd-28sq to track fixing all error handlers.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-21T21:07:35.304424-05:00","updated_at":"2025-12-25T13:32:32.460786-08:00","closed_at":"2025-12-25T13:32:32.460786-08:00","dependencies":[{"issue_id":"bd-au0.7","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:35.305663-05:00","created_by":"daemon"}]} {"id":"bd-au0.8","title":"Improve clean vs cleanup command naming/documentation","description":"Clarify the difference between bd clean and bd cleanup to reduce user confusion.\n\n**Current state:**\n- bd clean: Remove temporary artifacts (.beads/bd.sock, logs, etc.)\n- bd cleanup: Delete old closed issues from database\n\n**Options:**\n1. Rename for clarity:\n - bd clean → bd clean-temp\n - bd cleanup → bd cleanup-issues\n \n2. Keep names but improve help text and documentation\n\n3. Add prominent warnings in help output\n\n**Preferred approach:** Option 2 (improve documentation)\n- Update short/long descriptions in commands\n- Add examples to help text\n- Update README.md\n- Add cross-references in help output\n\n**Files to modify:**\n- cmd/bd/clean.go\n- cmd/bd/cleanup.go\n- README.md or ADVANCED.md","status":"closed","priority":2,"issue_type":"task","created_at":"2025-11-21T21:07:49.960534-05:00","updated_at":"2025-12-23T23:48:00.594734-08:00","closed_at":"2025-12-23T23:48:00.594734-08:00","dependencies":[{"issue_id":"bd-au0.8","depends_on_id":"bd-au0","type":"parent-child","created_at":"2025-11-21T21:07:49.962743-05:00","created_by":"daemon"}]} @@ -331,7 +331,7 @@ {"id":"bd-bw6","title":"Fix G104 errors unhandled in internal/storage/sqlite/queries.go:1181","description":"Linting issue: G104: Errors unhandled (gosec) at internal/storage/sqlite/queries.go:1181:4. Error: rows.Close()","status":"tombstone","priority":0,"issue_type":"bug","created_at":"2025-12-07T15:35:09.008444133-07:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-bwk2","title":"Centralize error handling patterns in storage layer","description":"80+ instances of inconsistent error handling across sqlite.go with mix of %w, %v, and no wrapping.\n\nLocation: internal/storage/sqlite/sqlite.go (throughout)\n\nProblem:\n- Some use fmt.Errorf(\"op failed: %w\", err) - correct wrapping\n- Some use fmt.Errorf(\"op failed: %v\", err) - loses error chain\n- Some return err directly - no context\n- Hard to debug production issues\n- Can't distinguish error types\n\nSolution: Create internal/storage/sqlite/errors.go:\n- Define sentinel errors (ErrNotFound, ErrInvalidID, etc.)\n- Create wrapDBError(op string, err error) helper\n- Convert sql.ErrNoRows to ErrNotFound\n- Always wrap with operation context\n\nImpact: Lost error context; inconsistent messages; hard to debug\n\nEffort: 5-7 hours","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-16T14:51:54.974909-08:00","updated_at":"2025-12-21T21:44:37.237175-08:00","closed_at":"2025-12-21T21:44:37.237175-08:00"} {"id":"bd-bxha","title":"Default to YES for git hooks and merge driver installation","description":"Currently bd init prompts user to install git hooks and merge driver, but setup is incomplete if user declines. Change to install by default unless --skip-hooks or --skip-merge-driver flags are passed. Better safe defaults. If installation fails, warn user and suggest bd doctor --fix.","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-11-21T23:16:10.172238-08:00","updated_at":"2025-12-23T04:20:51.885765-08:00","closed_at":"2025-12-23T04:20:51.885765-08:00","dependencies":[{"issue_id":"bd-bxha","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:10.173034-08:00","created_by":"daemon"}]} -{"id":"bd-bxqv","title":"Update documentation for CLI consolidation","description":"## Task\nUpdate all documentation to reflect CLI consolidation changes.\n\n## Files requiring updates\n\n### Primary docs\n- docs/CLI_REFERENCE.md - Major updates\n - Add admin section (cleanup, compact, reset)\n - Update migrate section (subcommands)\n - Update formula section (add cook)\n - Remove/update standalone command references\n\n### Secondary docs \n- docs/DELETIONS.md - migrate-tombstones → migrate tombstones, compact → admin compact\n- docs/FAQ.md - compact → admin compact\n- docs/QUICKSTART.md - compact, cleanup → admin compact, admin cleanup\n- docs/TROUBLESHOOTING.md - compact → admin compact\n- docs/CONFIG.md - compact → admin compact\n- docs/INSTALLING.md - quickstart reference\n- docs/EXTENDING.md - quickstart reference\n\n### Skills docs\n- skills/beads/SKILL.md - compact, quickstart references\n- skills/beads/references/CLI_REFERENCE.md - mirror main CLI_REFERENCE.md\n\n### Other docs\n- commands/quickstart.md - update or remove\n- commands/compact.md - update to admin compact\n- examples/compaction/README.md - update examples\n- README.md - quickstart reference\n- CHANGELOG.md - add consolidation changes section\n\n## Implementation notes\n- Keep backwards compatibility notices where aliases exist\n- Update command examples to use new paths\n- Consider adding deprecation warnings section\n","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-27T15:11:33.307408-08:00","updated_at":"2025-12-27T16:19:36.155138-08:00","closed_at":"2025-12-27T16:19:36.155138-08:00","created_by":"mayor","dependencies":[{"issue_id":"bd-bxqv","depends_on_id":"bd-kff0","type":"blocks","created_at":"2025-12-27T15:11:52.533506-08:00","created_by":"daemon"},{"issue_id":"bd-bxqv","depends_on_id":"bd-w3z7","type":"blocks","created_at":"2025-12-27T15:11:52.445529-08:00","created_by":"daemon"},{"issue_id":"bd-bxqv","depends_on_id":"bd-do8e","type":"blocks","created_at":"2025-12-27T15:11:52.475688-08:00","created_by":"daemon"},{"issue_id":"bd-bxqv","depends_on_id":"bd-3u8m","type":"blocks","created_at":"2025-12-27T15:11:52.504528-08:00","created_by":"daemon"}]} +{"id":"bd-bxqv","title":"Update documentation for CLI consolidation","description":"## Task\nUpdate all documentation to reflect CLI consolidation changes.\n\n## Files requiring updates\n\n### Primary docs\n- docs/CLI_REFERENCE.md - Major updates\n - Add admin section (cleanup, compact, reset)\n - Update migrate section (subcommands)\n - Update formula section (add cook)\n - Remove/update standalone command references\n\n### Secondary docs \n- docs/DELETIONS.md - migrate-tombstones → migrate tombstones, compact → admin compact\n- docs/FAQ.md - compact → admin compact\n- docs/QUICKSTART.md - compact, cleanup → admin compact, admin cleanup\n- docs/TROUBLESHOOTING.md - compact → admin compact\n- docs/CONFIG.md - compact → admin compact\n- docs/INSTALLING.md - quickstart reference\n- docs/EXTENDING.md - quickstart reference\n\n### Skills docs\n- skills/beads/SKILL.md - compact, quickstart references\n- skills/beads/references/CLI_REFERENCE.md - mirror main CLI_REFERENCE.md\n\n### Other docs\n- commands/quickstart.md - update or remove\n- commands/compact.md - update to admin compact\n- examples/compaction/README.md - update examples\n- README.md - quickstart reference\n- CHANGELOG.md - add consolidation changes section\n\n## Implementation notes\n- Keep backwards compatibility notices where aliases exist\n- Update command examples to use new paths\n- Consider adding deprecation warnings section\n","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-27T15:11:33.307408-08:00","updated_at":"2025-12-27T16:19:36.155138-08:00","closed_at":"2025-12-27T16:19:36.155138-08:00","created_by":"mayor","dependencies":[{"issue_id":"bd-bxqv","depends_on_id":"bd-3u8m","type":"blocks","created_at":"2025-12-27T15:11:52.504528-08:00","created_by":"daemon"},{"issue_id":"bd-bxqv","depends_on_id":"bd-kff0","type":"blocks","created_at":"2025-12-27T15:11:52.533506-08:00","created_by":"daemon"},{"issue_id":"bd-bxqv","depends_on_id":"bd-w3z7","type":"blocks","created_at":"2025-12-27T15:11:52.445529-08:00","created_by":"daemon"},{"issue_id":"bd-bxqv","depends_on_id":"bd-do8e","type":"blocks","created_at":"2025-12-27T15:11:52.475688-08:00","created_by":"daemon"}]} {"id":"bd-by0d","title":"Work on beads-ldv: Fix bd graph crashes with nil pointer ...","description":"Work on beads-ldv: Fix bd graph crashes with nil pointer dereference (GH#657). Fix nil pointer in computeDependencyCounts at graph.go:428. When done, submit MR (not PR) to integration branch for Refinery.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-19T22:55:27.829359-08:00","updated_at":"2025-12-19T23:28:32.428314-08:00","closed_at":"2025-12-19T23:20:49.038441-08:00"} {"id":"bd-c0b6","title":"bd init --from-jsonl: Skip git history scan","description":"## Problem\n\n`bd init` scans git history to find all issues ever created, which:\n- Resurrects deleted/compacted issues\n- Takes a long time on large repos\n- Defeats manual JSONL cleanup\n\n## Solution\n\nAdd `bd init --from-jsonl` flag that:\n1. Creates fresh database\n2. Imports ONLY from current .beads/issues.jsonl\n3. Skips git history scan entirely\n\n## Use Case\n\nAfter manually cleaning JSONL or receiving a clean JSONL from another source:\n```bash\n# Clean JSONL manually or via script\nbd init --from-jsonl # Use current JSONL as-is\n```\n\n(Moved from hq-c21fj)","status":"closed","priority":3,"issue_type":"feature","created_at":"2026-01-02T01:29:20.851319-08:00","updated_at":"2026-01-02T16:59:09.07064-08:00","closed_at":"2026-01-02T16:59:09.07064-08:00","close_reason":"Already implemented: bd init --from-jsonl exists and does exactly this","created_by":"beads/crew/dave"} {"id":"bd-c2po","title":"Gate eval: Consider rate limiting for GitHub API calls","description":"Each gate evaluation makes a network call to GitHub API via gh CLI. With many gates, this could hit API rate limits.\n\nFuture improvements:\n1. Batch queries where possible\n2. Add caching with TTL for recently-checked gates\n3. Exponential backoff on rate limit errors\n\nLow priority - unlikely to be an issue until we have many concurrent gates.","status":"closed","priority":4,"issue_type":"task","created_at":"2025-12-25T23:13:13.295309-08:00","updated_at":"2025-12-30T19:32:18.332836-08:00","closed_at":"2025-12-30T19:32:18.332836-08:00","close_reason":"Deferred - unlikely to be an issue until we have many concurrent gates per description"} @@ -366,12 +366,12 @@ {"id":"bd-ctmg","title":"CLI cleanup: Rename bd mol catalog to bd formula list","description":"## Problem\n`bd mol catalog` shows formulas, not molecules. This is confusing.\n\nCurrent state:\n- `bd formula list` - lists formulas\n- `bd mol catalog` - ALSO lists formulas (duplicate!)\n\nThe \"mol\" namespace should be for molecules (instantiated work), not formulas (templates).\n\n## Proposed Change\n- Remove `bd mol catalog`\n- Keep `bd formula list` as the canonical command\n- Update docs to use `bd formula list`\n\n## Alternative\nIf we want a \"catalog\" concept separate from \"list\", make it `bd formula catalog`.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-27T14:28:04.647593-08:00","updated_at":"2025-12-27T14:33:44.517362-08:00","closed_at":"2025-12-27T14:33:44.517362-08:00","created_by":"mayor"} {"id":"bd-cuek","title":"bd doctor --fix destroys child→parent dependencies without confirmation","description":"GH#740: User reports that `bd doctor --fix` removed their intentional child→parent dependencies, calling them an 'anti-pattern'.\n\nThe fix in `cmd/bd/doctor/fix/validation.go` (ChildParentDependencies function) automatically deletes dependencies where a child issue depends on its parent epic.\n\n**Problem**: This assumes all such dependencies are mistakes, but users may intentionally want children blocked by their parent (e.g., 'don't start subtasks until parent is fully scoped').\n\n**Solution options**:\n1. Remove this fix entirely (let users manage their own deps)\n2. Require explicit opt-in flag like `--fix-child-parent`\n3. Add confirmation prompt before destructive action\n4. Add `--dry-run` to preview what would be removed\n5. Only warn, never auto-fix\n\n**Files involved**:\n- `cmd/bd/doctor/validation.go:311-382` (check)\n- `cmd/bd/doctor/fix/validation.go:165-227` (fix)","status":"closed","priority":0,"issue_type":"bug","created_at":"2025-12-25T13:59:52.811547-08:00","updated_at":"2025-12-25T14:05:41.249168-08:00","closed_at":"2025-12-25T14:05:41.249168-08:00"} {"id":"bd-cwpl","title":"bd doctor --deep: validate full graph integrity","description":"Add a deep validation mode to bd doctor that checks the entire issue graph.\n\nCurrent doctor checks:\n- Orphan sessions\n- Orphan processes \n- Wisp GC\n- Sync status\n\nProposed --deep checks:\n- **Parent consistency**: Every issue with parent field points to existing issue\n- **Dependency symmetry**: If A depends on B, B should show A in blocks\n- **Orphan issues**: Issues mentioned in commits but never closed\n- **Circular dependencies**: Detect dependency cycles\n- **Epic completeness**: Epics with all children closed should be closeable\n- **Agent bead integrity**: Agent beads have required fields (role_bead, state)\n- **Mail thread integrity**: Messages point to valid threads\n- **Molecule state**: Molecules have valid current_step pointing to existing step\n\nUse case: After complex operations (reparenting, migrations, bulk updates), run `bd doctor --deep` to catch graph inconsistencies before they cause problems.\n\nPerformance: May be slow on large databases - warn user and show progress.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-27T23:07:22.185409-08:00","updated_at":"2025-12-28T02:13:41.833478-08:00","closed_at":"2025-12-28T02:13:41.833478-08:00","created_by":"mayor"} -{"id":"bd-czss","title":"Update CHANGELOG.md with release notes","description":"Add meaningful release notes to CHANGELOG.md describing what changed in {{version}}","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:55:59.909641-08:00","updated_at":"2025-12-20T17:59:26.262153-08:00","closed_at":"2025-12-20T01:23:51.407302-08:00","dependencies":[{"issue_id":"bd-czss","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:14.862724-08:00","created_by":"daemon"},{"issue_id":"bd-czss","depends_on_id":"bd-qkw9","type":"blocks","created_at":"2025-12-19T22:56:23.145894-08:00","created_by":"daemon"}]} +{"id":"bd-czss","title":"Update CHANGELOG.md with release notes","description":"Add meaningful release notes to CHANGELOG.md describing what changed in {{version}}","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:55:59.909641-08:00","updated_at":"2025-12-20T17:59:26.262153-08:00","closed_at":"2025-12-20T01:23:51.407302-08:00","dependencies":[{"issue_id":"bd-czss","depends_on_id":"bd-qkw9","type":"blocks","created_at":"2025-12-19T22:56:23.145894-08:00","created_by":"daemon"},{"issue_id":"bd-czss","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:14.862724-08:00","created_by":"daemon"}]} {"id":"bd-d148","title":"GH#483: Pre-commit hook fails unnecessarily when .beads removed","description":"Pre-commit hook fails on bd sync when .beads directory exists but user is on branch without beads. Should exit gracefully. See GitHub issue #483.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:40.049785-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-d1n1","title":"Epic: Gate-Aware Release Workflow","description":"Reimagine beads-release.formula using gates for async waits.\n\n## Background\nCurrent release workflow has polecat sitting idle during CI (5-10 min wait).\nGates allow clean handoff: polecat completes phase, gate blocks next step,\nRefinery polls external condition, gate closes, new polecat resumes.\n\n## Phases\n1. Formula gate syntax (Step.Gate field)\n2. Gate bead creation during cook\n3. Polecat phase handoff protocol\n4. Refinery gh:run auto-discovery\n5. Full gate-aware release formula\n\n## Related\n- bd-mcva: Gate Evaluation (phases 2-4) - infrastructure\n- beads-release.formula.json: Current workflow","status":"closed","priority":1,"issue_type":"epic","created_at":"2026-01-02T13:26:59.278771-08:00","updated_at":"2026-01-02T16:54:51.00089-08:00","closed_at":"2026-01-02T16:54:51.00089-08:00","close_reason":"All 5 tasks complete: schema, cook gates, phase handoff, refinery discovery, formula v2","created_by":"mayor"} {"id":"bd-d28c","title":"Test createTombstone and deleteIssue wrappers","description":"Add tests for the createTombstone and deleteIssue wrapper functions in cmd/bd/delete.go.\n\n## Functions under test\n- createTombstone (cmd/bd/delete.go:335) - Wrapper around SQLite CreateTombstone\n- deleteIssue (cmd/bd/delete.go:349) - Wrapper around SQLite DeleteIssue\n\n## Test scenarios for createTombstone\n1. Successful tombstone creation\n2. Tombstone with reason and actor tracking\n3. Error when issue doesn't exist\n4. Verify tombstone status set correctly\n5. Verify audit trail recorded\n6. Rollback/error handling\n\n## Test scenarios for deleteIssue\n1. Successful issue deletion\n2. Error on non-existent issue\n3. Verify issue removed from database\n4. Error handling when storage backend doesn't support delete\n\n## Coverage target\nCurrent: 0%\nTarget: \u003e85%\n\n## Related\n- Parent epic: bd-kyll\n- Original issue: bd-7z4","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T13:08:37.669214532-07:00","updated_at":"2025-12-23T21:44:33.169062-08:00","closed_at":"2025-12-23T21:44:33.169062-08:00","dependencies":[{"issue_id":"bd-d28c","depends_on_id":"bd-kyll","type":"parent-child","created_at":"2025-12-18T13:08:37.70588226-07:00","created_by":"mhwilkie"}]} {"id":"bd-d3e5","title":"Test issue 2","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-14T11:21:13.878680387-07:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-d4jl","title":"Commit and push release","description":"git add -A \u0026\u0026 git commit -m 'chore: bump version to 0.32.1' \u0026\u0026 git push","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:21.928138-08:00","updated_at":"2025-12-20T21:57:12.81943-08:00","closed_at":"2025-12-20T21:57:12.81943-08:00","dependencies":[{"issue_id":"bd-d4jl","depends_on_id":"bd-tj00","type":"blocks","created_at":"2025-12-20T21:53:29.884457-08:00","created_by":"daemon"},{"issue_id":"bd-d4jl","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:21.930015-08:00","created_by":"daemon"}]} +{"id":"bd-d4jl","title":"Commit and push release","description":"git add -A \u0026\u0026 git commit -m 'chore: bump version to 0.32.1' \u0026\u0026 git push","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:21.928138-08:00","updated_at":"2025-12-20T21:57:12.81943-08:00","closed_at":"2025-12-20T21:57:12.81943-08:00","dependencies":[{"issue_id":"bd-d4jl","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:21.930015-08:00","created_by":"daemon"},{"issue_id":"bd-d4jl","depends_on_id":"bd-tj00","type":"blocks","created_at":"2025-12-20T21:53:29.884457-08:00","created_by":"daemon"}]} {"id":"bd-d73u","title":"Re: Thread Test 2","description":"Great! Thread is working well.","status":"tombstone","priority":2,"issue_type":"message","created_at":"2025-12-16T18:21:46.655093-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","dependencies":[{"issue_id":"bd-d73u","depends_on_id":"bd-vpan","type":"replies-to","created_at":"2025-12-18T13:45:31.137191-08:00","created_by":"migration"}],"deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"message"} {"id":"bd-d9mu","title":"Cross-rig external dependency support","description":"Support dependencies on issues in other rigs/repos.\n\n## Use Case\n\nGas Town issues often depend on Beads issues (and vice versa). Currently we use labels like `external:beads/bd-xxx` as documentation, but:\n- `bd blocked` doesn't recognize external deps\n- `bd ready` doesn't filter them out\n- No way to query cross-rig status\n\n## Proposed UX\n\n### Adding external deps\n```bash\n# New syntax for bd dep add\nbd dep add gt-a07f external:beads:bd-kwjh\n\n# Or maybe cleaner\nbd dep add gt-a07f --external beads:bd-kwjh\n```\n\n### Showing blocked status\n```bash\nbd blocked\n# → gt-a07f blocked by external:beads:bd-kwjh (unverified)\n\n# With optional cross-rig query\nbd blocked --resolve-external\n# → gt-a07f blocked by external:beads:bd-kwjh (closed) ← unblocked!\n```\n\n### Storage\nCould use:\n- Special dependency type: `type: external`\n- Label convention: `external:rig:id`\n- New field: `external_deps: [\"beads:bd-kwjh\"]`\n\n## Implementation Notes\n\nCross-rig queries would need:\n- Known rig locations (config or discovery)\n- Read-only beads access to external rigs\n- Caching to avoid repeated queries\n\nFor MVP, just recognizing external deps and marking them as 'unverified' blockers would be valuable.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-22T02:27:23.892706-08:00","updated_at":"2025-12-22T22:32:49.261551-08:00","closed_at":"2025-12-22T22:32:49.261551-08:00"} {"id":"bd-db72","title":"Upgrade local Homebrew installation","description":"Upgrade bd via Homebrew:\n\n```bash\nbrew update\nbrew upgrade bd\n/opt/homebrew/bin/bd version # Verify shows 0.33.2\n```","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-21T16:10:13.760552-08:00","updated_at":"2025-12-21T17:29:31.791368-08:00","deleted_at":"2025-12-21T17:29:31.791368-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} @@ -387,13 +387,13 @@ {"id":"bd-dpbm","title":"Test no validate","description":"Quick capture","status":"closed","priority":2,"issue_type":"bug","created_at":"2026-01-01T19:24:58.637574-08:00","updated_at":"2026-01-01T19:25:09.044121-08:00","closed_at":"2026-01-01T19:25:09.044121-08:00","close_reason":"Test issue cleanup","created_by":"beads/polecats/opal"} {"id":"bd-dq74","title":"bd repair: Handle .beads/redirect files","description":"The bd repair command hardcodes .beads/beads.db path but doesn't follow .beads/redirect files like other commands do. This means repair won't work on clones that use redirected beads directories.\n\nFix: Check for .beads/redirect file and follow it to find the actual database location.","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-29T12:47:53.089729-08:00","updated_at":"2025-12-29T12:59:05.121303-08:00","closed_at":"2025-12-29T12:59:05.121303-08:00","close_reason":"Fixed in commit d7a67ad6","created_by":"stevey"} {"id":"bd-dqck","title":"Version Bump: test-squash","description":"Release checklist for version test-squash. This molecule ensures all release steps are completed properly.","status":"tombstone","priority":1,"issue_type":"epic","created_at":"2025-12-21T13:52:33.065408-08:00","updated_at":"2025-12-21T13:53:41.946036-08:00","deleted_at":"2025-12-21T13:53:41.946036-08:00","deleted_by":"stevey","delete_reason":"manual delete","original_type":"epic"} -{"id":"bd-dqu8","title":"Restart running daemons","description":"Kill and restart any running bd daemons to pick up new version: pkill -f 'bd daemon' \u0026\u0026 bd daemon --start","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T00:32:26.559311-08:00","updated_at":"2025-12-20T00:32:59.123766-08:00","closed_at":"2025-12-20T00:32:59.123766-08:00","dependencies":[{"issue_id":"bd-dqu8","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-20T00:32:39.36213-08:00","created_by":"daemon"},{"issue_id":"bd-dqu8","depends_on_id":"bd-fgw3","type":"blocks","created_at":"2025-12-20T00:32:39.427846-08:00","created_by":"daemon"}]} +{"id":"bd-dqu8","title":"Restart running daemons","description":"Kill and restart any running bd daemons to pick up new version: pkill -f 'bd daemon' \u0026\u0026 bd daemon --start","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T00:32:26.559311-08:00","updated_at":"2025-12-20T00:32:59.123766-08:00","closed_at":"2025-12-20T00:32:59.123766-08:00","dependencies":[{"issue_id":"bd-dqu8","depends_on_id":"bd-fgw3","type":"blocks","created_at":"2025-12-20T00:32:39.427846-08:00","created_by":"daemon"},{"issue_id":"bd-dqu8","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-20T00:32:39.36213-08:00","created_by":"daemon"}]} {"id":"bd-drcx","title":"bd mol run: Support proto lookup by title","description":"`bd mol run` only accepts proto ID (e.g., gt-lwuu), not proto title (e.g., mol-polecat-work).\n\n## Current Behavior\n```bash\nbd mol run mol-polecat-work --var issue=gt-xxx\n# Error: no issue found matching \"mol-polecat-work\"\n\nbd mol run gt-lwuu --var issue=gt-xxx \n# Works\n```\n\n## Desired Behavior\nBoth should work - lookup by ID or by title.\n\n## Why This Matters\n- Proto titles are human-readable and memorable\n- Proto IDs are opaque (gt-lwuu vs mol-polecat-work)\n- Hardcoding IDs in code is fragile (IDs change across databases)\n- `bd mol catalog` shows both: `gt-lwuu: mol-polecat-work`\n\n## Workaround\nCurrently using hardcoded proto ID in gt spawn, which is brittle.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-24T23:12:49.151242-08:00","updated_at":"2025-12-24T23:32:20.615624-08:00","closed_at":"2025-12-24T23:32:20.615624-08:00"} {"id":"bd-drxs","title":"Make merge requests ephemeral wisps instead of permanent issues","description":"## Problem\n\nMerge requests (MRs) are currently created as regular beads issues (type: merge-request). This means they:\n- Sync to JSONL and propagate via git\n- Accumulate in the issue database indefinitely\n- Clutter `bd list` output with closed MRs\n- Create permanent records for inherently transient artifacts\n\nMRs are process artifacts, not work products. They exist briefly while code awaits merge, then their purpose is fulfilled. The git merge commit and GitHub PR (if applicable) provide the permanent audit trail - the beads MR is redundant.\n\n## Proposed Solution\n\nMake MRs ephemeral wisps that exist only during the merge process:\n\n1. **Create MRs as wisps**: When a polecat completes work and requests merge, create the MR in `.beads-wisp/` instead of `.beads/`\n\n2. **Refinery visibility**: This works because all clones within a rig share the same database:\n ```\n beads/ ← Rig root\n ├── .beads/ ← Permanent issues (synced to JSONL)\n ├── .beads-wisp/ ← Ephemeral wisps (NOT synced)\n ├── crew/dave/ ← Uses rig's shared DB\n ├── polecats/*/ ← Uses rig's shared DB\n └── refinery/ ← Uses rig's shared DB\n ```\n The refinery can see wisp MRs immediately - same SQLite database.\n\n3. **On merge completion**: Burn the wisp (delete without digest). The git merge commit IS the permanent record. No digest needed since:\n - Digest wouldn't be smaller than the MR itself (~200-300 bytes either way)\n - Git history provides complete audit trail\n - GitHub PR (if used) provides discussion/approval record\n\n4. **On merge rejection/abandonment**: Burn the wisp. Optionally notify the source polecat via mail.\n\n## Benefits\n\n- **Clean JSONL**: MRs never pollute the permanent issue history\n- **No accumulation**: Wisps are burned on completion, no cleanup needed\n- **Correct semantics**: Wisps are for \"operational ephemera\" - MRs fit perfectly\n- **Reduced sync churn**: Fewer JSONL updates, faster `bd sync`\n- **Cleaner queries**: `bd list` shows work items, not process artifacts\n\n## Implementation Notes\n\n### Where MRs are created\n\nCurrently MRs are created by the witness or polecat when work is ready for merge. This code needs to:\n- Set `wisp: true` on the MR issue\n- Or use a dedicated wisp creation path\n\n### Refinery changes\n\nThe refinery queries for pending MRs to process. It needs to:\n- Query wisp storage as well as (or instead of) permanent storage\n- Use `bd mol burn` or equivalent to delete processed MRs\n\n### What about cross-rig MRs?\n\nIf an MR needs to be visible outside the rig (e.g., external collaborators):\n- They would see the GitHub PR anyway\n- Or we could create a permanent \"merge completed\" notification issue\n- But this is likely unnecessary - MRs are internal coordination\n\n### Migration\n\nExisting MRs in permanent storage:\n- Can be cleaned up with `bd cleanup` or manual deletion\n- Or left to age out naturally\n- No migration of open MRs needed (they'll complete under old system\n\n## Alternatives Considered\n\n1. **Auto-cleanup of closed MRs**: Keep MRs as permanent issues but auto-delete after 24h. Simpler but still creates sync churn and temporary JSONL pollution.\n\n2. **MRs as mail only**: Polecat sends mail to refinery with merge details, no MR issue at all. Loses queryability (bd-801b [P2] [merge-request] closed - Merge: bd-bqcc\nbd-pvu0 [P2] [merge-request] closed - Merge: bd-4opy\nbd-i0rx [P2] [merge-request] closed - Merge: bd-ao0s\nbd-u0sb [P2] [merge-request] closed - Merge: bd-uqfn\nbd-8e0q [P2] [merge-request] closed - Merge: beads-ocs\nbd-hvng [P2] [merge-request] closed - Merge: bd-w193\nbd-4sfl [P2] [merge-request] closed - Merge: bd-14ie\nbd-sumr [P2] [merge-request] closed - Merge: bd-t4sb\nbd-3x9o [P2] [merge-request] closed - Merge: bd-by0d\nbd-whgv [P2] [merge-request] closed - Merge: bd-401h\nbd-f3ll [P2] [merge-request] closed - Merge: bd-ot0w\nbd-fmdy [P3] [merge-request] closed - Merge: bd-kzda).\n\n3. **Separate merge queue**: Refinery maintains internal state for pending merges, not in beads at all. Clean but requires new infrastructure.\n\nWisps are the cleanest solution - they already exist, have the right semantics, and require minimal changes.\n\n## Related\n\n- Wisp architecture: \n- Current MR creation: witness/refinery code paths\n- bd-pvu0, bd-801b: Example MRs currently in permanent storage\nEOF\n)","status":"tombstone","priority":0,"issue_type":"feature","created_at":"2025-12-23T01:39:25.4918-08:00","updated_at":"2025-12-23T01:58:23.550668-08:00","deleted_at":"2025-12-23T01:58:23.550668-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"feature"} {"id":"bd-dsdh","title":"Document sync.branch 'always dirty' working tree behavior","description":"## Context\n\nWhen sync.branch is configured, the .beads/issues.jsonl file in main's working tree is ALWAYS dirty. This is by design:\n\n1. bd sync commits to beads-sync branch (via worktree)\n2. bd sync copies JSONL to main's working tree (so CLI commands work)\n3. This copy is NOT committed to main (to reduce commit noise)\n\nContributors who watch main branch history pushed for sync.branch to avoid constant beads commit noise. But users need to understand the trade-off.\n\n## Documentation Needed\n\nUpdate README.md sync.branch section with:\n\n1. **Clear explanation** of why .beads/ is always dirty on main\n2. **\"Be Zen about it\"** - this is expected, not a bug\n3. **Workflow options:**\n - Accept dirty state, use `bd sync --merge` periodically to snapshot to main\n - Or disable sync.branch if clean working tree is more important\n4. **Shell alias tip** to hide beads from git status:\n ```bash\n alias gs='git status -- \":!.beads/\"'\n ```\n5. **When to merge**: releases, milestones, or periodic snapshots\n\n## Related\n\n- bd-7b7h: Fix that allows bd sync --merge to work with dirty .beads/\n- bd-elqd: Investigation that identified this as expected behavior","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-16T23:16:12.253559-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-dsp","title":"Test stdin body-file","status":"tombstone","priority":4,"issue_type":"task","created_at":"2025-12-17T17:27:32.098806-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-dtl8","title":"Test deleteViaDaemon RPC client integration","description":"Add comprehensive tests for the deleteViaDaemon function (cmd/bd/delete.go:21) which handles client-side RPC deletion calls.\n\n## Function under test\n- deleteViaDaemon: CLI command handler that sends delete requests to daemon via RPC\n\n## Test scenarios needed\n1. Successful deletion via daemon\n2. Cascade deletion through daemon\n3. Force deletion through daemon\n4. Dry-run mode (no actual deletion)\n5. Error handling:\n - Daemon unavailable\n - Invalid issue IDs\n - Dependency conflicts\n6. JSON output validation\n7. Human-readable output formatting\n\n## Coverage target\nCurrent: 0%\nTarget: \u003e80%\n\n## Related\n- Parent epic: bd-kyll\n- Original issue: bd-7z4","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T13:08:29.805706253-07:00","updated_at":"2025-12-23T23:50:35.615163-08:00","closed_at":"2025-12-23T23:50:35.615163-08:00","dependencies":[{"issue_id":"bd-dtl8","depends_on_id":"bd-kyll","type":"parent-child","created_at":"2025-12-18T13:08:29.807984381-07:00","created_by":"mhwilkie"}]} -{"id":"bd-du9h","title":"Add Validation type and validations field to Issue","description":"Add Validation struct (Validator *EntityRef, Outcome string, Timestamp time.Time, Score *float32) and Validations []Validation field to Issue. Tracks who validated/approved work completion. Core to HOP proof-of-stake concept - validators stake reputation on approvals.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-22T17:53:37.725701-08:00","updated_at":"2025-12-22T20:08:59.925028-08:00","closed_at":"2025-12-22T20:08:59.925028-08:00","dependencies":[{"issue_id":"bd-du9h","depends_on_id":"bd-nmch","type":"blocks","created_at":"2025-12-22T17:53:47.896552-08:00","created_by":"daemon"},{"issue_id":"bd-du9h","depends_on_id":"bd-7pwh","type":"parent-child","created_at":"2025-12-22T17:53:43.470984-08:00","created_by":"daemon"}]} +{"id":"bd-du9h","title":"Add Validation type and validations field to Issue","description":"Add Validation struct (Validator *EntityRef, Outcome string, Timestamp time.Time, Score *float32) and Validations []Validation field to Issue. Tracks who validated/approved work completion. Core to HOP proof-of-stake concept - validators stake reputation on approvals.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-22T17:53:37.725701-08:00","updated_at":"2025-12-22T20:08:59.925028-08:00","closed_at":"2025-12-22T20:08:59.925028-08:00","dependencies":[{"issue_id":"bd-du9h","depends_on_id":"bd-7pwh","type":"parent-child","created_at":"2025-12-22T17:53:43.470984-08:00","created_by":"daemon"},{"issue_id":"bd-du9h","depends_on_id":"bd-nmch","type":"blocks","created_at":"2025-12-22T17:53:47.896552-08:00","created_by":"daemon"}]} {"id":"bd-duyg","title":"Feature: bd swarm list - discover existing swarm molecules","description":"No command to list existing swarm molecules.\n\nAdd `bd swarm list` to show all swarm molecules:\n\n```\nbd swarm list\n\nActive swarms:\n bd-xyz: Swarm: Feature X (3/10 complete, 2 active)\n bd-abc: Swarm: Bug fixes (0/5 complete)\n```\n\nCould also be achieved via `bd list --mol-type=swarm` but dedicated command would show richer info.","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-28T21:38:11.773961-08:00","updated_at":"2025-12-28T22:03:49.97246-08:00","closed_at":"2025-12-28T22:03:49.97246-08:00","created_by":"beads/crew/dave","dependencies":[{"issue_id":"bd-duyg","depends_on_id":"bd-2ubv","type":"parent-child","created_at":"2025-12-28T21:38:44.775264-08:00","created_by":"daemon"}]} {"id":"bd-dwh","title":"Implement or remove ExpectExit/ExpectStdout verification fields","description":"The Verification struct in internal/types/workflow.go has ExpectExit and ExpectStdout fields that are never used by workflowVerifyCmd. Either implement the functionality or remove the dead fields.","status":"tombstone","priority":3,"issue_type":"task","created_at":"2025-12-17T22:23:02.708627-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-dx6e","title":"bd activity --town: Aggregated town feed","description":"Add --town flag to bd activity for aggregated cross-rig feed.\n\nBehavior:\n- Uses routes.jsonl to discover all rigs\n- Aggregates activity from all rig beads\n- Essential for Deacon's convoy tracking and cross-rig dep resolution\n\nUsage:\n bd activity --follow --town # Stream all rig activity\n\nRelated: hq-7h8jx (Convoy System epic in town beads)","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-29T18:47:03.057447-08:00","updated_at":"2025-12-29T21:10:00.71961-08:00","closed_at":"2025-12-29T21:10:00.71961-08:00","close_reason":"Implemented --town flag for bd activity. Aggregates mutations from all rig daemons discovered via routes.jsonl.","created_by":"mayor"} @@ -436,7 +436,7 @@ {"id":"bd-fej5","title":"bd hook: detect agent from cwd instead of defaulting to $USER","description":"**Problem:**\n`bd hook` without `--agent` defaults to `$USER` (e.g., \"stevey\") instead of detecting the agent identity from the current working directory.\n\n**Expected behavior:**\nWhen running from `/Users/stevey/gt/beads/crew/dave`, the agent should be detected as `beads/crew/dave`.\n\n**Current behavior:**\n```bash\n$ pwd\n/Users/stevey/gt/beads/crew/dave\n$ bd hook\nHook: stevey\n (empty)\n\n$ bd hook --agent beads/crew/dave\nHook: beads/crew/dave\n 📌 bd-hobo (mol) - open\n```\n\n**Fix:**\nbd hook should use the same cwd-based agent detection that other commands use (similar to how `gt mail` determines identity from cwd).","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-24T20:01:27.613892-08:00","updated_at":"2025-12-25T12:41:10.65257-08:00","closed_at":"2025-12-25T12:41:10.65257-08:00"} {"id":"bd-ffjt","title":"Unify template.go and mol.go under bd mol","description":"Consolidate the two DAG-template systems into one under the mol command. mol.go (on rictus branch) has the right UX (catalog/show/bond), template.go has the mechanics. Merge them, deprecate bd template commands.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T23:52:13.208972-08:00","updated_at":"2025-12-21T00:01:59.283765-08:00","closed_at":"2025-12-21T00:01:59.283765-08:00"} {"id":"bd-ffp5","title":"Review PR #908: feat(doctor) external hook managers","description":"dispatched_by: beads/crew/emma\n\nReview and merge PR #908 from roelofb.\n\nPR: https://github.com/anthropics/beads/pull/908\nChanges: +1364/-5, 4 files (doctor/fix/hooks.go, hooks_test.go, git.go, CHANGELOG.md)\n\nFeature: detect external hook managers and check bd integration\n\nReview checklist:\n- [ ] Code quality and style\n- [ ] Tests pass\n- [ ] Feature works as intended\n- [ ] Approve or request changes","status":"closed","priority":2,"issue_type":"task","created_at":"2026-01-05T19:09:22.112242-08:00","updated_at":"2026-01-05T19:12:29.744463-08:00","closed_at":"2026-01-05T19:12:29.744463-08:00","close_reason":"PR #908 reviewed, approved, and merged","created_by":"beads/crew/emma"} -{"id":"bd-fgw3","title":"Update local installation","description":"Run install script or brew upgrade to get new version locally: curl -fsSL .../install.sh | bash","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:05.052016-08:00","updated_at":"2025-12-20T00:49:51.928221-08:00","closed_at":"2025-12-20T00:25:52.805029-08:00","dependencies":[{"issue_id":"bd-fgw3","depends_on_id":"bd-si4g","type":"blocks","created_at":"2025-12-19T22:56:23.497325-08:00","created_by":"daemon"},{"issue_id":"bd-fgw3","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.248427-08:00","created_by":"daemon"}]} +{"id":"bd-fgw3","title":"Update local installation","description":"Run install script or brew upgrade to get new version locally: curl -fsSL .../install.sh | bash","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:05.052016-08:00","updated_at":"2025-12-20T00:49:51.928221-08:00","closed_at":"2025-12-20T00:25:52.805029-08:00","dependencies":[{"issue_id":"bd-fgw3","depends_on_id":"bd-6s61","type":"parent-child","created_at":"2025-12-19T22:56:15.248427-08:00","created_by":"daemon"},{"issue_id":"bd-fgw3","depends_on_id":"bd-si4g","type":"blocks","created_at":"2025-12-19T22:56:23.497325-08:00","created_by":"daemon"}]} {"id":"bd-fi05","title":"bd sync fails with orphaned issues and duplicate ID conflict","description":"After fixing the deleted_at TEXT column scanning bug (commit 18b1eb2), bd sync still fails with two issues:\n\n1. Orphan Detection Warning: 12 orphaned child issues whose parents no longer exist (bd-cb64c226.* and bd-cbed9619.*)\n\n2. Import Failure: UNIQUE constraint failed for bd-360 - this tombstone exists in both DB and JSONL\n\nError: \"Import failed: error creating depth-0 issues: bulk insert issues: failed to insert issue bd-360: sqlite3: constraint failed: UNIQUE constraint failed: issues.id\"\n\nFix options:\n- Delete orphaned child issues with bd delete\n- Resolve bd-360 duplicate (in deletions.jsonl vs tombstone in DB)\n- Reset sync branch: git branch -f beads-sync main \u0026\u0026 git push --force-with-lease origin beads-sync","notes":"Fixed tombstone constraint violation bug. When deleting closed issues, the CHECK constraint (status = 'closed') = (closed_at IS NOT NULL) was violated because CreateTombstone didn't clear closed_at. Fix: set closed_at = NULL in tombstone creation SQL.\n\nThe sync data corruption (orphaned issues in beads-sync branch) requires manual cleanup: reset sync branch with 'git branch -f beads-sync main \u0026\u0026 git push --force-with-lease origin beads-sync'","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-13T07:14:33.831346-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-fjuf","title":"Work on gt-8tmz.10: Rename Engineer in Box to Shiny. Rena...","description":"Work on gt-8tmz.10: Rename Engineer in Box to Shiny. Rename mol-engineer-in-box references to mol-shiny or just 'shiny'. Update docs and code in internal/formula/ and .beads/formulas/. When done: 1) bd close gt-8tmz.10, 2) bd sync, 3) git push, 4) gt mq submit","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-25T19:26:18.426959-08:00","updated_at":"2025-12-25T19:30:19.947382-08:00","closed_at":"2025-12-25T19:30:19.947382-08:00"} {"id":"bd-fmdy","title":"Merge: bd-kzda","description":"branch: polecat/toast\ntarget: main\nsource_issue: bd-kzda\nrig: beads","status":"closed","priority":3,"issue_type":"merge-request","created_at":"2025-12-23T00:27:28.952413-08:00","updated_at":"2025-12-23T01:33:25.731326-08:00","closed_at":"2025-12-23T01:33:25.731326-08:00"} @@ -545,7 +545,7 @@ {"id":"bd-kp9y","title":"gt swarm dispatch command not working","description":"The 'gt swarm dispatch' command shown in help doesn't appear to work as expected.\n\n**Observed:**\n```\n$ gt swarm dispatch bd-784c\n[prints help text instead of dispatching]\n```\n\n**Expected:**\nShould dispatch the next ready task from the epic to an available worker.\n\n**Workaround:**\nHad to manually use 'gt sling \u003cissue\u003e \u003cpolecat\u003e' for each task dispatch.\n\n**Impact:**\n- Manual task dispatch defeats swarm automation\n- Coordinator has to track which tasks are ready and which polecats are free\n\n**Suggestion:**\nImplement or fix 'gt swarm dispatch' to:\n1. Find next unassigned task in epic\n2. Find idle polecat in swarm\n3. Sling task to polecat automatically","status":"closed","priority":3,"issue_type":"bug","created_at":"2025-12-28T16:18:10.320094-08:00","updated_at":"2025-12-29T18:30:05.386394-08:00","closed_at":"2025-12-29T18:30:05.386394-08:00","close_reason":"Moved to gastown: gt-s94gq (this is a gt command, not beads)","created_by":"beads/crew/dave"} {"id":"bd-kptp","title":"Merge: bd-qioh","description":"branch: polecat/Errata\ntarget: main\nsource_issue: bd-qioh\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-23T13:46:08.832073-08:00","updated_at":"2025-12-23T19:12:08.350136-08:00","closed_at":"2025-12-23T19:12:08.350136-08:00"} {"id":"bd-kpy","title":"Sync race: rebase-based divergence recovery resurrects tombstones","description":"## Problem\nWhen two repos sync simultaneously, tombstones can be resurrected:\n\n1. Repo A deletes issue (creates tombstone), pushes to sync branch\n2. Repo B (with 'closed' status) exports and tries to push\n3. Push fails (non-fast-forward)\n4. fetchAndRebaseInWorktree does git rebase\n5. Git rebase applies B's 'closed' patch on top of A's 'tombstone'\n6. TEXT-level rebase doesn't invoke beads merge driver\n7. 'closed' overwrites 'tombstone' = resurrection\n\n## Root Cause\nCommitToSyncBranch uses git rebase for divergence recovery, but rebase is text-level, not content-level. The proper content-level merge in PullFromSyncBranch handles tombstones correctly, but it runs AFTER the problematic push.\n\n## Proposed Fix\nOption 1: Don't push in CommitToSyncBranch - let PullFromSyncBranch handle merge+push\nOption 2: Replace git rebase with content-level merge in fetchAndRebaseInWorktree\nOption 3: Reorder sync steps: Export → Pull/Merge → Commit → Push\n\n## Workaround Applied\nExcluded tombstones from orphan detection warnings (commit 1e97d9cc).\n\nSee also: bd-3852 (Add orphan detection migration)","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-17T23:29:33.049272-08:00","updated_at":"2025-12-24T22:41:09.184574-08:00","closed_at":"2025-12-24T22:41:09.184574-08:00"} -{"id":"bd-kqo1","title":"Show pin indicator in bd list output","description":"Add a visual indicator (e.g., pin emoji or [P] marker) for pinned issues in bd list output so users can easily identify them.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-18T23:33:47.402549-08:00","updated_at":"2025-12-21T11:30:27.272768-08:00","closed_at":"2025-12-21T11:30:27.272768-08:00","dependencies":[{"issue_id":"bd-kqo1","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.771791-08:00","created_by":"daemon"},{"issue_id":"bd-kqo1","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.985271-08:00","created_by":"daemon"}]} +{"id":"bd-kqo1","title":"Show pin indicator in bd list output","description":"Add a visual indicator (e.g., pin emoji or [P] marker) for pinned issues in bd list output so users can easily identify them.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-18T23:33:47.402549-08:00","updated_at":"2025-12-21T11:30:27.272768-08:00","closed_at":"2025-12-21T11:30:27.272768-08:00","dependencies":[{"issue_id":"bd-kqo1","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.985271-08:00","created_by":"daemon"},{"issue_id":"bd-kqo1","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.771791-08:00","created_by":"daemon"}]} {"id":"bd-kqw0","title":"Update local installation","description":"Run install script or brew upgrade to get new version locally: curl -fsSL .../install.sh | bash","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-21T13:52:33.066452-08:00","updated_at":"2025-12-21T13:53:49.656073-08:00","deleted_at":"2025-12-21T13:53:49.656073-08:00","deleted_by":"stevey","delete_reason":"manual delete","original_type":"task"} {"id":"bd-kvus","title":"bd sync fails when .beads/redirect points to different repo","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-31T11:36:35.614607-08:00","updated_at":"2025-12-31T13:31:39.491734-08:00","closed_at":"2025-12-31T13:31:39.491734-08:00","close_reason":"Duplicate of bd-e2q9 (fixed in same commit)","created_by":"gastown/crew/max"} {"id":"bd-kvwf","title":"Merge: quartz-1767142008267","description":"branch: polecat/quartz-1767142008267\ntarget: main\nsource_issue: quartz-1767142008267\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T16:50:35.727954-08:00","updated_at":"2025-12-30T18:12:30.969887-08:00","closed_at":"2025-12-30T18:11:07.891839-08:00","created_by":"beads/polecats/quartz"} @@ -553,9 +553,9 @@ {"id":"bd-kwjh.1","title":".beads-ephemeral/ storage backend","description":"Implement ephemeral storage layer for wisps.\n\n## Requirements\n- New storage location: .beads-ephemeral/issues.jsonl (sibling to .beads/)\n- Gitignored by default (add to .beads/.gitignore)\n- Same JSONL format as regular beads\n- Config option: ephemeral.directory (relative path)\n- ephemeral.enabled config flag\n\n## Storage Behavior\n- Ephemeral issues have `ephemeral: true` field\n- No sync to remote (local only)\n- No daemon tracking needed (transient)\n\n## Implementation\n- Add EphemeralStore in storage package\n- Initialize on demand when --ephemeral flag used\n- Share Issue struct, just different storage path","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-22T00:06:46.706026-08:00","updated_at":"2025-12-22T00:08:26.009875-08:00","dependencies":[{"issue_id":"bd-kwjh.1","depends_on_id":"bd-kwjh","type":"parent-child","created_at":"2025-12-22T00:06:46.706461-08:00","created_by":"daemon"}],"deleted_at":"2025-12-22T00:08:26.009875-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} {"id":"bd-kwjh.2","title":".beads-ephemeral/ storage backend","description":"Implement ephemeral storage layer for wisps.\n\n## Requirements\n- New storage location: .beads-ephemeral/issues.jsonl (sibling to .beads/)\n- Gitignored by default (add to .beads/.gitignore)\n- Same JSONL format as regular beads\n- Config option: ephemeral.directory (relative path)\n- ephemeral.enabled config flag\n\n## Storage Behavior\n- Ephemeral issues have ephemeral: true field\n- No sync to remote (local only)\n- No daemon tracking needed (transient)\n\n## Implementation\n- Add EphemeralStore in storage package\n- Initialize on demand when --ephemeral flag used\n- Share Issue struct, just different storage path","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-22T00:06:56.248345-08:00","updated_at":"2025-12-22T00:13:51.281427-08:00","closed_at":"2025-12-22T00:13:51.281427-08:00","dependencies":[{"issue_id":"bd-kwjh.2","depends_on_id":"bd-kwjh","type":"parent-child","created_at":"2025-12-22T00:06:56.248725-08:00","created_by":"daemon"}]} {"id":"bd-kwjh.3","title":"bd mol bond --ephemeral flag","description":"Add --ephemeral flag to bd mol bond command.\n\n## Behavior\n- `bd mol bond \u003cproto\u003e --ephemeral` creates molecule in .beads-ephemeral/\n- Without flag, creates in .beads/ (current behavior)\n- Ephemeral molecules have `ephemeral: true` in their issue record\n\n## Implementation\n- Add --ephemeral bool flag to mol bond command\n- Route to EphemeralStore when flag set\n- Set ephemeral:true on created issue\n\n## Testing\n- Test mol bond creates in correct location\n- Test ephemeral flag is persisted\n- Test regular mol bond still works","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-22T00:07:26.591728-08:00","updated_at":"2025-12-22T00:17:42.50719-08:00","closed_at":"2025-12-22T00:17:42.50719-08:00","dependencies":[{"issue_id":"bd-kwjh.3","depends_on_id":"bd-kwjh","type":"parent-child","created_at":"2025-12-22T00:07:26.592102-08:00","created_by":"daemon"},{"issue_id":"bd-kwjh.3","depends_on_id":"bd-kwjh.2","type":"blocks","created_at":"2025-12-22T00:07:26.592866-08:00","created_by":"daemon"}]} -{"id":"bd-kwjh.4","title":"bd mol squash handles wisp→digest","description":"Update bd mol squash to handle ephemeral molecules.\n\n## Behavior for Ephemeral Molecules\n1. Delete wisp from .beads-ephemeral/\n2. Create digest issue in .beads/ (permanent)\n3. Digest has type:digest and squashed_from field\n\n## Digest Format\n```json\n{\n \"id\": \"\u003cparent\u003e.digest-NNN\",\n \"type\": \"digest\",\n \"title\": \"\u003cproto\u003e cycle @ \u003ctimestamp\u003e\",\n \"description\": \"\u003csummary from --summary flag\u003e\",\n \"parent\": \"\u003cproto-id\u003e\",\n \"squashed_from\": \"\u003cwisp-id\u003e\"\n}\n```\n\n## Implementation\n- Detect if molecule is ephemeral (check storage location or flag)\n- Delete from ephemeral store\n- Create digest in permanent store\n- Return digest ID\n\n## Testing\n- Test squash of ephemeral mol creates digest\n- Test wisp is deleted after squash\n- Test digest is queryable","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-22T00:07:27.685116-08:00","updated_at":"2025-12-22T00:53:55.74082-08:00","closed_at":"2025-12-22T00:53:55.74082-08:00","dependencies":[{"issue_id":"bd-kwjh.4","depends_on_id":"bd-kwjh.2","type":"blocks","created_at":"2025-12-22T00:07:27.687773-08:00","created_by":"daemon"},{"issue_id":"bd-kwjh.4","depends_on_id":"bd-kwjh","type":"parent-child","created_at":"2025-12-22T00:07:27.686798-08:00","created_by":"daemon"}]} +{"id":"bd-kwjh.4","title":"bd mol squash handles wisp→digest","description":"Update bd mol squash to handle ephemeral molecules.\n\n## Behavior for Ephemeral Molecules\n1. Delete wisp from .beads-ephemeral/\n2. Create digest issue in .beads/ (permanent)\n3. Digest has type:digest and squashed_from field\n\n## Digest Format\n```json\n{\n \"id\": \"\u003cparent\u003e.digest-NNN\",\n \"type\": \"digest\",\n \"title\": \"\u003cproto\u003e cycle @ \u003ctimestamp\u003e\",\n \"description\": \"\u003csummary from --summary flag\u003e\",\n \"parent\": \"\u003cproto-id\u003e\",\n \"squashed_from\": \"\u003cwisp-id\u003e\"\n}\n```\n\n## Implementation\n- Detect if molecule is ephemeral (check storage location or flag)\n- Delete from ephemeral store\n- Create digest in permanent store\n- Return digest ID\n\n## Testing\n- Test squash of ephemeral mol creates digest\n- Test wisp is deleted after squash\n- Test digest is queryable","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-22T00:07:27.685116-08:00","updated_at":"2025-12-22T00:53:55.74082-08:00","closed_at":"2025-12-22T00:53:55.74082-08:00","dependencies":[{"issue_id":"bd-kwjh.4","depends_on_id":"bd-kwjh","type":"parent-child","created_at":"2025-12-22T00:07:27.686798-08:00","created_by":"daemon"},{"issue_id":"bd-kwjh.4","depends_on_id":"bd-kwjh.2","type":"blocks","created_at":"2025-12-22T00:07:27.687773-08:00","created_by":"daemon"}]} {"id":"bd-kwjh.5","title":"bd wisp list command","description":"Add bd wisp list command to show ephemeral molecules.\n\n## Usage\n```bash\nbd wisp list # List all wisps in current context\nbd wisp list --json # JSON output\nbd wisp list --all # Include orphaned wisps\n```\n\n## Output\n- Shows in-progress ephemeral molecules\n- Columns: ID, Title, Started, Last Update, Status\n- Warns about orphaned wisps (old updated_at)\n\n## Implementation\n- New 'wisp' command group\n- Read from .beads-ephemeral/issues.jsonl\n- Filter to ephemeral:true issues","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-22T00:07:29.514936-08:00","updated_at":"2025-12-22T01:09:03.514376-08:00","closed_at":"2025-12-22T01:09:03.514376-08:00","dependencies":[{"issue_id":"bd-kwjh.5","depends_on_id":"bd-kwjh","type":"parent-child","created_at":"2025-12-22T00:07:29.515301-08:00","created_by":"daemon"},{"issue_id":"bd-kwjh.5","depends_on_id":"bd-kwjh.2","type":"blocks","created_at":"2025-12-22T00:07:29.516134-08:00","created_by":"daemon"}]} -{"id":"bd-kwjh.6","title":"bd wisp gc command","description":"Add bd wisp gc command to garbage collect orphaned wisps.\n\n## Usage\n```bash\nbd wisp gc # Clean orphaned wisps\nbd wisp gc --dry-run # Show what would be cleaned\nbd wisp gc --age 1h # Custom orphan threshold (default: 1h)\n```\n\n## Orphan Detection\nA wisp is orphaned if:\n- process_id field exists AND process is dead\n- OR updated_at older than threshold AND not complete\n- AND molecule status is not complete/abandoned\n\n## Behavior\n- Delete orphaned wisps (no digest created)\n- Report count of cleaned wisps\n- --dry-run shows candidates without deleting\n\n## Implementation\n- Add 'gc' subcommand to wisp group\n- Process detection via os.FindProcess or /proc\n- Configurable age threshold","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-22T00:07:30.861155-08:00","updated_at":"2025-12-22T01:12:37.283991-08:00","closed_at":"2025-12-22T01:12:37.283991-08:00","dependencies":[{"issue_id":"bd-kwjh.6","depends_on_id":"bd-kwjh.2","type":"blocks","created_at":"2025-12-22T00:07:30.863721-08:00","created_by":"daemon"},{"issue_id":"bd-kwjh.6","depends_on_id":"bd-kwjh","type":"parent-child","created_at":"2025-12-22T00:07:30.862681-08:00","created_by":"daemon"}]} +{"id":"bd-kwjh.6","title":"bd wisp gc command","description":"Add bd wisp gc command to garbage collect orphaned wisps.\n\n## Usage\n```bash\nbd wisp gc # Clean orphaned wisps\nbd wisp gc --dry-run # Show what would be cleaned\nbd wisp gc --age 1h # Custom orphan threshold (default: 1h)\n```\n\n## Orphan Detection\nA wisp is orphaned if:\n- process_id field exists AND process is dead\n- OR updated_at older than threshold AND not complete\n- AND molecule status is not complete/abandoned\n\n## Behavior\n- Delete orphaned wisps (no digest created)\n- Report count of cleaned wisps\n- --dry-run shows candidates without deleting\n\n## Implementation\n- Add 'gc' subcommand to wisp group\n- Process detection via os.FindProcess or /proc\n- Configurable age threshold","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-22T00:07:30.861155-08:00","updated_at":"2025-12-22T01:12:37.283991-08:00","closed_at":"2025-12-22T01:12:37.283991-08:00","dependencies":[{"issue_id":"bd-kwjh.6","depends_on_id":"bd-kwjh","type":"parent-child","created_at":"2025-12-22T00:07:30.862681-08:00","created_by":"daemon"},{"issue_id":"bd-kwjh.6","depends_on_id":"bd-kwjh.2","type":"blocks","created_at":"2025-12-22T00:07:30.863721-08:00","created_by":"daemon"}]} {"id":"bd-kwjh.7","title":"bd mol burn deletes ephemeral without digest","description":"Update bd mol burn to handle ephemeral molecules.\n\n## Behavior for Ephemeral Molecules\n- Delete wisp from .beads-ephemeral/\n- NO digest created (unlike squash)\n- Used for abandoned/crashed cycles\n\n## Difference from Squash\n| Command | Ephemeral Behavior |\n|---------|-------------------|\n| squash | Delete wisp, create digest |\n| burn | Delete wisp, no trace |\n\n## Implementation\n- Detect if molecule is ephemeral\n- Delete from ephemeral store\n- Skip digest creation","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-22T00:07:32.020144-08:00","updated_at":"2025-12-22T01:11:05.487605-08:00","closed_at":"2025-12-22T01:11:05.487605-08:00","dependencies":[{"issue_id":"bd-kwjh.7","depends_on_id":"bd-kwjh","type":"parent-child","created_at":"2025-12-22T00:07:32.022117-08:00","created_by":"daemon"},{"issue_id":"bd-kwjh.7","depends_on_id":"bd-kwjh.2","type":"blocks","created_at":"2025-12-22T00:07:32.023217-08:00","created_by":"daemon"}]} {"id":"bd-kwro","title":"Beads Messaging \u0026 Knowledge Graph (v0.30.2)","description":"Add messaging semantics and extended graph links to Beads, enabling it to serve as\nthe universal substrate for knowledge work - issues, messages, documents, and threads\nas nodes in a queryable graph.\n\n## Motivation\n\nGas Town (GGT) needs inter-agent communication. Rather than a separate mail system,\ncollapse messaging into Beads - one system, one sync, one query interface, all in git.\n\nThis also positions Beads as a foundation for:\n- Company-wide issue tracking (like Notion)\n- Threaded conversations (like Reddit/Slack)\n- Knowledge graphs with loose associations\n- Arbitrary workflow UIs built on top\n\n## New Issue Type\n\n**message** - ephemeral communication between workers\n- sender: who sent it\n- assignee: recipient\n- priority: P0 (urgent) to P4 (routine)\n- status: open (unread) -\u003e closed (read)\n- ephemeral: true = can be bulk-deleted after swarm\n\n## New Graph Links\n\n**replies_to** - conversation threading\n- Messages reply to messages\n- Enables Reddit-style nested threads\n- Different from parent_id (not hierarchy, its conversation flow)\n\n**relates_to** - loose see also associations\n- Bidirectional knowledge graph edges\n- Not blocking, not hierarchical, just related\n- Enables discovery and traversal\n\n**duplicates** - deduplication at scale\n- Mark issue B as duplicate of canonical issue A\n- Close B, link to A\n- Essential for large issue databases\n\n**supersedes** - version chains\n- Design Doc v2 supersedes Design Doc v1\n- Track evolution of artifacts\n\n## New Fields (optional, any issue type)\n\n- sender (string) - who created this (for messages)\n- ephemeral (boolean) - can be bulk-deleted when closed\n\n## New Commands\n\nMessaging:\n- bd mail send \u003crecipient\u003e -s Subject -m Body\n- bd mail inbox (list open messages for me)\n- bd mail read \u003cid\u003e (show message content)\n- bd mail ack \u003cid\u003e (mark as read/close)\n- bd mail reply \u003cid\u003e -m Response (reply to thread)\n\nGraph links:\n- bd relate \u003cid1\u003e \u003cid2\u003e (create relates_to link)\n- bd duplicate \u003cid\u003e --of \u003ccanonical\u003e (mark as duplicate)\n- bd supersede \u003cid\u003e --with \u003cnew\u003e (mark superseded)\n\nCleanup:\n- bd cleanup --ephemeral (delete closed ephemeral issues)\n\n## Identity Configuration\n\nWorkers need identity for sender field:\n- BEADS_IDENTITY env var\n- Or .beads/config.json: identity field\n\n## Hooks (for GGT integration)\n\nBeads as platform - extensible without knowing about GGT.\nHook files in .beads/hooks/:\n- on_create (runs after bd create)\n- on_update (runs after bd update)\n- on_close (runs after bd close)\n- on_message (runs after bd mail send)\n\nGGT registers hooks to notify daemons of new messages.\n\n## Schema Changes (Migration Required)\n\nAdd to issue schema:\n- type: message (new valid type)\n- sender: string (optional)\n- ephemeral: boolean (optional)\n- replies_to: string (issue ID, optional)\n- relates_to: []string (issue IDs, optional)\n- duplicates: string (canonical issue ID, optional)\n- superseded_by: string (new issue ID, optional)\n\nMigration adds fields as optional - existing beads unchanged.\n\n## Success Criteria\n\n1. bd mail send/inbox/read/ack/reply work end-to-end\n2. replies_to creates proper thread structure\n3. relates_to, duplicates, supersedes links queryable\n4. Hooks fire on create/update/close/message\n5. Identity configurable via env or config\n6. Migration preserves all existing data\n7. All new features have tests","status":"tombstone","priority":0,"issue_type":"epic","created_at":"2025-12-16T03:00:53.912223-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"epic"} {"id":"bd-kwro.1","title":"Schema: Add message type and new fields","description":"Add to internal/storage/sqlite/schema.go and models:\n\nNew issue_type value:\n- message\n\nNew optional fields on Issue struct:\n- Sender string (who sent this)\n- Ephemeral bool (can be bulk-deleted)\n- RepliesTo string (issue ID for threading)\n- RelatesTo []string (issue IDs for knowledge graph)\n- Duplicates string (canonical issue ID)\n- SupersededBy string (replacement issue ID)\n\nUpdate:\n- internal/storage/sqlite/schema.go - add columns\n- internal/models/issue.go - add fields to struct\n- internal/storage/sqlite/sqlite.go - CRUD operations\n- Create migration from v0.30.1\n\nEnsure backward compatibility - all new fields optional.","status":"tombstone","priority":0,"issue_type":"task","created_at":"2025-12-16T03:01:19.777604-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} @@ -582,8 +582,8 @@ {"id":"bd-lfak.1","title":"Scaffold bd preflight command with checklist output","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-30T18:06:29.297254-08:00","updated_at":"2025-12-30T18:11:15.884294-08:00","closed_at":"2025-12-30T18:11:15.884294-08:00","close_reason":"Implemented static checklist output. Command now shows PR readiness checks. --check and --fix flags documented for future phases.","created_by":"mayor","dependencies":[{"issue_id":"bd-lfak.1","depends_on_id":"bd-lfak","type":"parent-child","created_at":"2025-12-30T18:06:29.297783-08:00","created_by":"mayor"}]} {"id":"bd-lfak.2","title":"Implement --check flag with test runner","description":"## Summary\nImplement the `--check` flag to run `go test -short ./...` and report results.\n\n## Implementation Details\n\n### Location\nFile: `cmd/bd/preflight.go`\n\n### Changes Required\n\n1. **Add check execution logic** in `runPreflight()`:\n```go\nif check {\n runChecks(cmd) // New function\n return\n}\n```\n\n2. **Implement test runner**:\n```go\nfunc runTestCheck() CheckResult {\n cmd := exec.Command(\"go\", \"test\", \"-short\", \"./...\")\n output, err := cmd.CombinedOutput()\n return CheckResult{\n Name: \"tests\",\n Passed: err == nil,\n Output: string(output),\n Command: \"go test -short ./...\",\n }\n}\n```\n\n3. **Define CheckResult struct**:\n```go\ntype CheckResult struct {\n Name string\n Passed bool\n Output string\n Command string\n}\n```\n\n4. **Output format**:\n```\n$ bd preflight --check\n✓ Tests pass\n Command: go test -short ./...\n \n# On failure:\n✗ Tests fail\n Command: go test -short ./...\n Output: [truncated test output]\n```\n\n### Testing\n- Add tests in `cmd/bd/preflight_test.go`\n- Test with passing tests (this repo)\n- Test with intentionally failing test (mock or temp file)\n\n### Acceptance Criteria\n- [x] `--check` flag runs tests (not just prints message)\n- [x] Clear pass/fail output with ✓/✗ symbols\n- [x] Shows command being run\n- [x] Shows output on failure (truncated if long)\n- [x] Exits with non-zero code if tests fail\n- [x] Works with `--json` flag for programmatic use","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-30T18:06:30.419315-08:00","updated_at":"2026-01-04T15:22:07.768601-08:00","closed_at":"2025-12-30T23:33:04.567543-08:00","close_reason":"Fixed test/implementation mismatch - tests now align with actual preflight.go","created_by":"mayor","dependencies":[{"issue_id":"bd-lfak.2","depends_on_id":"bd-lfak","type":"parent-child","created_at":"2025-12-30T18:06:30.419875-08:00","created_by":"mayor"},{"issue_id":"bd-lfak.2","depends_on_id":"bd-lfak.1","type":"blocks","created_at":"2025-12-30T18:06:48.582603-08:00","created_by":"mayor"}]} {"id":"bd-lfak.3","title":"Implement lint check (golangci-lint)","description":"## Summary\nAdd lint check using golangci-lint to the preflight --check mode.\n\n## Implementation Details\n\n### Location\nFile: `cmd/bd/preflight.go`\n\n### Changes Required\n\n1. **Implement lint checker**:\n```go\nfunc runLintCheck() CheckResult {\n // First check if golangci-lint is available\n if _, err := exec.LookPath(\"golangci-lint\"); err != nil {\n return CheckResult{\n Name: \"lint\",\n Passed: false,\n Output: \"golangci-lint not found in PATH\",\n Command: \"golangci-lint run ./...\",\n Skipped: true,\n }\n }\n \n cmd := exec.Command(\"golangci-lint\", \"run\", \"./...\")\n output, err := cmd.CombinedOutput()\n return CheckResult{\n Name: \"lint\",\n Passed: err == nil,\n Output: string(output),\n Command: \"golangci-lint run ./...\",\n }\n}\n```\n\n2. **Add Skipped field to CheckResult** (if not already added by bd-lfak.2):\n```go\ntype CheckResult struct {\n Name string\n Passed bool\n Output string\n Command string\n Skipped bool // Tool not available\n}\n```\n\n3. **Output format**:\n```\n$ bd preflight --check\n✓ Lint passes\n Command: golangci-lint run ./...\n\n# When tool missing:\n⚠ Lint skipped (golangci-lint not found)\n Install: go install github.com/golangci/golangci-lint/cmd/golangci-lint@latest\n\n# On failure:\n✗ Lint fails\n Command: golangci-lint run ./...\n Output: [lint errors]\n```\n\n### Dependencies\n- Depends on bd-lfak.2 for CheckResult struct and runChecks() framework\n\n### Testing\n- Test with clean lint (this repo should pass)\n- Test with golangci-lint not in PATH (mock or temp PATH)\n- Test with lint errors (intentional bad code)\n\n### Notes\n- This repo has baseline warnings documented in docs/LINTING.md\n- golangci-lint respects .golangci.yml config if present\n\n### Acceptance Criteria\n- [x] Runs golangci-lint when --check flag is used\n- [x] Gracefully handles missing golangci-lint binary\n- [x] Shows clear pass/fail/skip output\n- [x] Shows lint errors on failure\n- [x] Works with --json flag","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-30T18:06:31.445431-08:00","updated_at":"2025-12-31T00:03:07.142467-08:00","closed_at":"2025-12-31T00:03:07.142467-08:00","close_reason":"Implemented lint check with golangci-lint, graceful skip when tool not available","created_by":"mayor","dependencies":[{"issue_id":"bd-lfak.3","depends_on_id":"bd-lfak.2","type":"blocks","created_at":"2025-12-30T19:31:30.950646-08:00","created_by":"beads/crew/emma"},{"issue_id":"bd-lfak.3","depends_on_id":"bd-lfak","type":"parent-child","created_at":"2025-12-30T18:06:31.447094-08:00","created_by":"mayor"},{"issue_id":"bd-lfak.3","depends_on_id":"bd-lfak.1","type":"blocks","created_at":"2025-12-30T18:06:48.602793-08:00","created_by":"mayor"}]} -{"id":"bd-lfak.4","title":"Implement nix-hash staleness detection","description":"## Summary\nDetect when go.sum has changed but vendorHash in default.nix may be stale.\n\n## Implementation Details\n\n### Location\nFile: `cmd/bd/preflight.go`\n\n### Detection Logic\n\n**Tier 1 (Simple - implement this):**\nCheck if go.sum has uncommitted changes (staged or unstaged). If so, warn that vendorHash might need updating.\n\n```go\nfunc runNixHashCheck() CheckResult {\n // Check if go.sum has changes\n cmd := exec.Command(\"git\", \"diff\", \"--name-only\", \"HEAD\", \"--\", \"go.sum\")\n output, _ := cmd.Output()\n \n // Also check staged changes\n stagedCmd := exec.Command(\"git\", \"diff\", \"--name-only\", \"--cached\", \"--\", \"go.sum\")\n stagedOutput, _ := stagedCmd.Output()\n \n hasChanges := len(output) \u003e 0 || len(stagedOutput) \u003e 0\n \n if hasChanges {\n return CheckResult{\n Name: \"nix-hash\",\n Passed: false,\n Output: \"go.sum has changes - vendorHash in default.nix may need updating\",\n Command: \"git diff HEAD -- go.sum\",\n Warning: true, // Not a hard failure, just a warning\n }\n }\n \n return CheckResult{\n Name: \"nix-hash\",\n Passed: true,\n Output: \"go.sum unchanged\",\n Command: \"git diff HEAD -- go.sum\",\n }\n}\n```\n\n**Tier 2 (Future - auto-fix):**\nIf nix is available, compute the correct vendorHash:\n```bash\nnix-prefetch-url --unpack \"https://...\"\n# or use nix build with --print-out-paths\n```\n\n### Key Files\n- `go.sum` - Go module checksums\n- `default.nix` - Contains vendorHash on line 12\n\n### Output Format\n```\n$ bd preflight --check\n✓ Nix hash current (go.sum unchanged)\n\n# When go.sum changed:\n⚠ Nix hash may be stale\n go.sum has uncommitted changes\n Hint: If you modified dependencies, run nix build to get new vendorHash\n \n# When nix available (future):\n✗ Nix hash stale\n Expected: sha256-KRR6dXzsSw8OmEHGBEVDBOoIgfoZ2p0541T9ayjGHlI=\n Current: sha256-ovG0EWQFtifHF5leEQTFvTjGvc+yiAjpAaqaV0OklgE=\n Fix: bd preflight --fix\n```\n\n### Add Warning field to CheckResult\n```go\ntype CheckResult struct {\n Name string\n Passed bool\n Output string\n Command string\n Skipped bool\n Warning bool // Yellow ⚠ instead of red ✗\n}\n```\n\n### Testing\n- Test with clean go.sum (no changes)\n- Test with modified go.sum (stage a fake change, then reset)\n- Test output format\n\n### Acceptance Criteria\n- [x] Detects when go.sum has uncommitted changes\n- [x] Shows as warning (⚠) not error (✗)\n- [x] Provides helpful hint about vendorHash\n- [x] Works with --json flag\n- [x] Does not require nix to be installed (just git)","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-30T18:06:32.318167-08:00","updated_at":"2025-12-31T00:06:02.045812-08:00","closed_at":"2025-12-31T00:06:02.045812-08:00","close_reason":"Implemented nix-hash staleness detection with warning state for go.sum changes","created_by":"mayor","dependencies":[{"issue_id":"bd-lfak.4","depends_on_id":"bd-lfak","type":"parent-child","created_at":"2025-12-30T18:06:32.31998-08:00","created_by":"mayor"},{"issue_id":"bd-lfak.4","depends_on_id":"bd-lfak.1","type":"blocks","created_at":"2025-12-30T18:06:48.621655-08:00","created_by":"mayor"},{"issue_id":"bd-lfak.4","depends_on_id":"bd-lfak.2","type":"blocks","created_at":"2025-12-30T19:31:30.9704-08:00","created_by":"beads/crew/emma"}]} -{"id":"bd-lfak.5","title":"Implement version-sync check (version.go vs default.nix)","description":"## Summary\nCheck that version in `cmd/bd/version.go` matches version in `default.nix`.\n\n## Current State (as of writing)\n- version.go: Version = \"0.41.0\"\n- default.nix: version = \"0.37.0\"\n- **These are already out of sync!** This check would catch this.\n\n## Implementation Details\n\n### Location\nFile: `cmd/bd/preflight.go`\n\n### Key Files\n- `cmd/bd/version.go` line 17: `Version = \"0.41.0\"`\n- `default.nix` line 4: `version = \"0.37.0\";`\n\n### Implementation\n\n```go\nfunc runVersionSyncCheck() CheckResult {\n // Read version.go\n versionGoContent, err := os.ReadFile(\"cmd/bd/version.go\")\n if err != nil {\n return CheckResult{\n Name: \"version-sync\",\n Passed: false,\n Output: fmt.Sprintf(\"Cannot read cmd/bd/version.go: %v\", err),\n Skipped: true,\n }\n }\n \n // Extract version from version.go\n // Pattern: Version = \"X.Y.Z\"\n versionGoRe := regexp.MustCompile(`Version\\s*=\\s*\"([^\"]+)\"`)\n versionGoMatch := versionGoRe.FindSubmatch(versionGoContent)\n if versionGoMatch == nil {\n return CheckResult{\n Name: \"version-sync\",\n Passed: false,\n Output: \"Cannot parse version from version.go\",\n Skipped: true,\n }\n }\n goVersion := string(versionGoMatch[1])\n \n // Read default.nix\n nixContent, err := os.ReadFile(\"default.nix\")\n if err != nil {\n return CheckResult{\n Name: \"version-sync\",\n Passed: true, // No nix file = no sync needed\n Output: \"default.nix not found (skipping nix version check)\",\n Skipped: true,\n }\n }\n \n // Extract version from default.nix\n // Pattern: version = \"X.Y.Z\";\n nixRe := regexp.MustCompile(`version\\s*=\\s*\"([^\"]+)\"`)\n nixMatch := nixRe.FindSubmatch(nixContent)\n if nixMatch == nil {\n return CheckResult{\n Name: \"version-sync\",\n Passed: false,\n Output: \"Cannot parse version from default.nix\",\n Skipped: true,\n }\n }\n nixVersion := string(nixMatch[1])\n \n if goVersion != nixVersion {\n return CheckResult{\n Name: \"version-sync\",\n Passed: false,\n Output: fmt.Sprintf(\"Version mismatch: version.go=%s, default.nix=%s\", goVersion, nixVersion),\n Command: \"Compare cmd/bd/version.go and default.nix\",\n }\n }\n \n return CheckResult{\n Name: \"version-sync\",\n Passed: true,\n Output: fmt.Sprintf(\"Versions match: %s\", goVersion),\n Command: \"Compare cmd/bd/version.go and default.nix\",\n }\n}\n```\n\n### Output Format\n```\n$ bd preflight --check\n✓ Version sync (0.41.0)\n\n# On mismatch:\n✗ Version mismatch\n version.go: 0.41.0\n default.nix: 0.37.0\n Fix: Update default.nix to match version.go\n```\n\n### Future: Auto-fix\nFor --fix mode, update default.nix automatically:\n```go\n// Replace version line in default.nix\nnewContent := nixRe.ReplaceAll(nixContent, \n []byte(fmt.Sprintf(`version = \"%s\"`, goVersion)))\nos.WriteFile(\"default.nix\", newContent, 0644)\n```\n\n### Testing\n- Test with matching versions\n- Test with mismatched versions (current state!)\n- Test with missing files\n\n### Acceptance Criteria\n- [x] Reads version from both files\n- [x] Compares and reports mismatch\n- [x] Shows both versions clearly on mismatch\n- [x] Works when default.nix is missing (skip gracefully)\n- [x] Works with --json flag","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-30T18:06:33.380378-08:00","updated_at":"2025-12-31T00:08:48.691805-08:00","closed_at":"2025-12-31T00:08:48.691805-08:00","close_reason":"Implemented version sync check comparing version.go and default.nix; also fixed existing mismatch","created_by":"mayor","dependencies":[{"issue_id":"bd-lfak.5","depends_on_id":"bd-lfak","type":"parent-child","created_at":"2025-12-30T18:06:33.382134-08:00","created_by":"mayor"},{"issue_id":"bd-lfak.5","depends_on_id":"bd-lfak.1","type":"blocks","created_at":"2025-12-30T18:06:48.64101-08:00","created_by":"mayor"},{"issue_id":"bd-lfak.5","depends_on_id":"bd-lfak.2","type":"blocks","created_at":"2025-12-30T19:31:30.989707-08:00","created_by":"beads/crew/emma"}]} +{"id":"bd-lfak.4","title":"Implement nix-hash staleness detection","description":"## Summary\nDetect when go.sum has changed but vendorHash in default.nix may be stale.\n\n## Implementation Details\n\n### Location\nFile: `cmd/bd/preflight.go`\n\n### Detection Logic\n\n**Tier 1 (Simple - implement this):**\nCheck if go.sum has uncommitted changes (staged or unstaged). If so, warn that vendorHash might need updating.\n\n```go\nfunc runNixHashCheck() CheckResult {\n // Check if go.sum has changes\n cmd := exec.Command(\"git\", \"diff\", \"--name-only\", \"HEAD\", \"--\", \"go.sum\")\n output, _ := cmd.Output()\n \n // Also check staged changes\n stagedCmd := exec.Command(\"git\", \"diff\", \"--name-only\", \"--cached\", \"--\", \"go.sum\")\n stagedOutput, _ := stagedCmd.Output()\n \n hasChanges := len(output) \u003e 0 || len(stagedOutput) \u003e 0\n \n if hasChanges {\n return CheckResult{\n Name: \"nix-hash\",\n Passed: false,\n Output: \"go.sum has changes - vendorHash in default.nix may need updating\",\n Command: \"git diff HEAD -- go.sum\",\n Warning: true, // Not a hard failure, just a warning\n }\n }\n \n return CheckResult{\n Name: \"nix-hash\",\n Passed: true,\n Output: \"go.sum unchanged\",\n Command: \"git diff HEAD -- go.sum\",\n }\n}\n```\n\n**Tier 2 (Future - auto-fix):**\nIf nix is available, compute the correct vendorHash:\n```bash\nnix-prefetch-url --unpack \"https://...\"\n# or use nix build with --print-out-paths\n```\n\n### Key Files\n- `go.sum` - Go module checksums\n- `default.nix` - Contains vendorHash on line 12\n\n### Output Format\n```\n$ bd preflight --check\n✓ Nix hash current (go.sum unchanged)\n\n# When go.sum changed:\n⚠ Nix hash may be stale\n go.sum has uncommitted changes\n Hint: If you modified dependencies, run nix build to get new vendorHash\n \n# When nix available (future):\n✗ Nix hash stale\n Expected: sha256-KRR6dXzsSw8OmEHGBEVDBOoIgfoZ2p0541T9ayjGHlI=\n Current: sha256-ovG0EWQFtifHF5leEQTFvTjGvc+yiAjpAaqaV0OklgE=\n Fix: bd preflight --fix\n```\n\n### Add Warning field to CheckResult\n```go\ntype CheckResult struct {\n Name string\n Passed bool\n Output string\n Command string\n Skipped bool\n Warning bool // Yellow ⚠ instead of red ✗\n}\n```\n\n### Testing\n- Test with clean go.sum (no changes)\n- Test with modified go.sum (stage a fake change, then reset)\n- Test output format\n\n### Acceptance Criteria\n- [x] Detects when go.sum has uncommitted changes\n- [x] Shows as warning (⚠) not error (✗)\n- [x] Provides helpful hint about vendorHash\n- [x] Works with --json flag\n- [x] Does not require nix to be installed (just git)","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-30T18:06:32.318167-08:00","updated_at":"2025-12-31T00:06:02.045812-08:00","closed_at":"2025-12-31T00:06:02.045812-08:00","close_reason":"Implemented nix-hash staleness detection with warning state for go.sum changes","created_by":"mayor","dependencies":[{"issue_id":"bd-lfak.4","depends_on_id":"bd-lfak.2","type":"blocks","created_at":"2025-12-30T19:31:30.9704-08:00","created_by":"beads/crew/emma"},{"issue_id":"bd-lfak.4","depends_on_id":"bd-lfak","type":"parent-child","created_at":"2025-12-30T18:06:32.31998-08:00","created_by":"mayor"},{"issue_id":"bd-lfak.4","depends_on_id":"bd-lfak.1","type":"blocks","created_at":"2025-12-30T18:06:48.621655-08:00","created_by":"mayor"}]} +{"id":"bd-lfak.5","title":"Implement version-sync check (version.go vs default.nix)","description":"## Summary\nCheck that version in `cmd/bd/version.go` matches version in `default.nix`.\n\n## Current State (as of writing)\n- version.go: Version = \"0.41.0\"\n- default.nix: version = \"0.37.0\"\n- **These are already out of sync!** This check would catch this.\n\n## Implementation Details\n\n### Location\nFile: `cmd/bd/preflight.go`\n\n### Key Files\n- `cmd/bd/version.go` line 17: `Version = \"0.41.0\"`\n- `default.nix` line 4: `version = \"0.37.0\";`\n\n### Implementation\n\n```go\nfunc runVersionSyncCheck() CheckResult {\n // Read version.go\n versionGoContent, err := os.ReadFile(\"cmd/bd/version.go\")\n if err != nil {\n return CheckResult{\n Name: \"version-sync\",\n Passed: false,\n Output: fmt.Sprintf(\"Cannot read cmd/bd/version.go: %v\", err),\n Skipped: true,\n }\n }\n \n // Extract version from version.go\n // Pattern: Version = \"X.Y.Z\"\n versionGoRe := regexp.MustCompile(`Version\\s*=\\s*\"([^\"]+)\"`)\n versionGoMatch := versionGoRe.FindSubmatch(versionGoContent)\n if versionGoMatch == nil {\n return CheckResult{\n Name: \"version-sync\",\n Passed: false,\n Output: \"Cannot parse version from version.go\",\n Skipped: true,\n }\n }\n goVersion := string(versionGoMatch[1])\n \n // Read default.nix\n nixContent, err := os.ReadFile(\"default.nix\")\n if err != nil {\n return CheckResult{\n Name: \"version-sync\",\n Passed: true, // No nix file = no sync needed\n Output: \"default.nix not found (skipping nix version check)\",\n Skipped: true,\n }\n }\n \n // Extract version from default.nix\n // Pattern: version = \"X.Y.Z\";\n nixRe := regexp.MustCompile(`version\\s*=\\s*\"([^\"]+)\"`)\n nixMatch := nixRe.FindSubmatch(nixContent)\n if nixMatch == nil {\n return CheckResult{\n Name: \"version-sync\",\n Passed: false,\n Output: \"Cannot parse version from default.nix\",\n Skipped: true,\n }\n }\n nixVersion := string(nixMatch[1])\n \n if goVersion != nixVersion {\n return CheckResult{\n Name: \"version-sync\",\n Passed: false,\n Output: fmt.Sprintf(\"Version mismatch: version.go=%s, default.nix=%s\", goVersion, nixVersion),\n Command: \"Compare cmd/bd/version.go and default.nix\",\n }\n }\n \n return CheckResult{\n Name: \"version-sync\",\n Passed: true,\n Output: fmt.Sprintf(\"Versions match: %s\", goVersion),\n Command: \"Compare cmd/bd/version.go and default.nix\",\n }\n}\n```\n\n### Output Format\n```\n$ bd preflight --check\n✓ Version sync (0.41.0)\n\n# On mismatch:\n✗ Version mismatch\n version.go: 0.41.0\n default.nix: 0.37.0\n Fix: Update default.nix to match version.go\n```\n\n### Future: Auto-fix\nFor --fix mode, update default.nix automatically:\n```go\n// Replace version line in default.nix\nnewContent := nixRe.ReplaceAll(nixContent, \n []byte(fmt.Sprintf(`version = \"%s\"`, goVersion)))\nos.WriteFile(\"default.nix\", newContent, 0644)\n```\n\n### Testing\n- Test with matching versions\n- Test with mismatched versions (current state!)\n- Test with missing files\n\n### Acceptance Criteria\n- [x] Reads version from both files\n- [x] Compares and reports mismatch\n- [x] Shows both versions clearly on mismatch\n- [x] Works when default.nix is missing (skip gracefully)\n- [x] Works with --json flag","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-30T18:06:33.380378-08:00","updated_at":"2025-12-31T00:08:48.691805-08:00","closed_at":"2025-12-31T00:08:48.691805-08:00","close_reason":"Implemented version sync check comparing version.go and default.nix; also fixed existing mismatch","created_by":"mayor","dependencies":[{"issue_id":"bd-lfak.5","depends_on_id":"bd-lfak.1","type":"blocks","created_at":"2025-12-30T18:06:48.64101-08:00","created_by":"mayor"},{"issue_id":"bd-lfak.5","depends_on_id":"bd-lfak.2","type":"blocks","created_at":"2025-12-30T19:31:30.989707-08:00","created_by":"beads/crew/emma"},{"issue_id":"bd-lfak.5","depends_on_id":"bd-lfak","type":"parent-child","created_at":"2025-12-30T18:06:33.382134-08:00","created_by":"mayor"}]} {"id":"bd-lfiu","title":"bd dep add: Auto-resolve cross-rig IDs using routes.jsonl","description":"Currently, adding a dependency to an issue in another rig requires verbose external reference syntax:\n\n```bash\n# This fails - can't resolve bd-* from gastown context\nbd dep add gt-xyz bd-abc\n\n# This works but is verbose\nbd dep add gt-xyz external:beads:bd-abc\n```\n\nThe town-level routing (~/gt/.beads/routes.jsonl) already knows how to map prefixes to rigs:\n```json\n{\"prefix\": \"gt-\", \"path\": \"gastown/mayor/rig\"}\n{\"prefix\": \"bd-\", \"path\": \"beads/mayor/rig\"}\n```\n\nEnhancement: When `bd dep add` encounters an ID with a foreign prefix, it should:\n1. Check routes.jsonl for the prefix mapping\n2. Auto-resolve to external:\u003cproject\u003e:\u003cid\u003e internally\n3. Allow the simpler `bd dep add gt-xyz bd-abc` syntax\n\nThis would make cross-rig dependencies much more ergonomic.","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-26T20:20:40.814713-08:00","updated_at":"2025-12-26T23:47:52.82107-08:00","closed_at":"2025-12-26T23:47:52.82107-08:00"} {"id":"bd-likt","title":"Add daemon RPC support for gate commands","description":"Add daemon RPC support for gate commands.\n\n## Current State\nGate commands require --no-daemon flag because they use direct SQLite access:\n- Gate create needs to write await_type, await_id, timeout_ns, waiters fields\n- Gate wait needs to update waiters JSON array\n- Daemon RPC doesnt have methods for these operations\n\n## Implementation\n\n### 1. Add RPC methods to internal/rpc/protocol.go\n\n```go\n// Gate operations\ntype GateCreateArgs struct {\n Title string \\`json:\"title\"\\`\n AwaitType string \\`json:\"await_type\"\\`\n AwaitID string \\`json:\"await_id\"\\`\n Timeout time.Duration \\`json:\"timeout\"\\`\n Waiters []string \\`json:\"waiters\"\\`\n}\n\ntype GateCreateResult struct {\n Issue *types.Issue \\`json:\"issue\"\\`\n}\n\ntype GateListArgs struct {\n All bool \\`json:\"all\"\\` // Include closed gates\n}\n\ntype GateListResult struct {\n Gates []*types.Issue \\`json:\"gates\"\\`\n}\n\ntype GateWaitArgs struct {\n GateID string \\`json:\"gate_id\"\\`\n Waiters []string \\`json:\"waiters\"\\` // Additional waiters to add\n}\n\ntype GateWaitResult struct {\n Gate *types.Issue \\`json:\"gate\"\\`\n AddedCount int \\`json:\"added_count\"\\`\n}\n```\n\n### 2. Add handler methods to internal/daemon/rpc_handler.go\n\n```go\nfunc (h *RPCHandler) GateCreate(ctx context.Context, args *rpc.GateCreateArgs) (*rpc.GateCreateResult, error) {\n now := time.Now()\n gate := \u0026types.Issue{\n Title: args.Title,\n IssueType: types.TypeGate,\n Status: types.StatusOpen,\n Priority: 1,\n Assignee: \"deacon/\",\n Wisp: true,\n AwaitType: args.AwaitType,\n AwaitID: args.AwaitID,\n Timeout: args.Timeout,\n Waiters: args.Waiters,\n CreatedAt: now,\n UpdatedAt: now,\n }\n gate.ContentHash = gate.ComputeContentHash()\n \n if err := h.store.CreateIssue(ctx, gate, h.actor); err != nil {\n return nil, err\n }\n \n return \u0026rpc.GateCreateResult{Issue: gate}, nil\n}\n\nfunc (h *RPCHandler) GateList(ctx context.Context, args *rpc.GateListArgs) (*rpc.GateListResult, error) {\n gateType := types.TypeGate\n filter := types.IssueFilter{IssueType: \u0026gateType}\n if !args.All {\n openStatus := types.StatusOpen\n filter.Status = \u0026openStatus\n }\n \n gates, err := h.store.SearchIssues(ctx, \"\", filter)\n if err != nil {\n return nil, err\n }\n \n return \u0026rpc.GateListResult{Gates: gates}, nil\n}\n\nfunc (h *RPCHandler) GateWait(ctx context.Context, args *rpc.GateWaitArgs) (*rpc.GateWaitResult, error) {\n gate, err := h.store.GetIssue(ctx, args.GateID)\n if err != nil {\n return nil, err\n }\n if gate.IssueType != types.TypeGate {\n return nil, fmt.Errorf(\"%s is not a gate\", args.GateID)\n }\n \n // Merge waiters (dedupe)\n waiterSet := make(map[string]bool)\n for _, w := range gate.Waiters {\n waiterSet[w] = true\n }\n added := 0\n for _, w := range args.Waiters {\n if !waiterSet[w] {\n gate.Waiters = append(gate.Waiters, w)\n waiterSet[w] = true\n added++\n }\n }\n \n if added \u003e 0 {\n // Update via store\n updates := map[string]interface{}{\n \"waiters\": gate.Waiters,\n }\n if err := h.store.UpdateIssue(ctx, args.GateID, updates, h.actor); err != nil {\n return nil, err\n }\n }\n \n return \u0026rpc.GateWaitResult{Gate: gate, AddedCount: added}, nil\n}\n```\n\n### 3. Register methods in daemon\n\nIn internal/daemon/server.go, register the new methods:\n```go\nrpc.RegisterMethod(\"gate.create\", h.GateCreate)\nrpc.RegisterMethod(\"gate.list\", h.GateList)\nrpc.RegisterMethod(\"gate.wait\", h.GateWait)\n```\n\n### 4. Add client methods to internal/rpc/client.go\n\n```go\nfunc (c *Client) GateCreate(ctx context.Context, args *GateCreateArgs) (*GateCreateResult, error) {\n var result GateCreateResult\n err := c.Call(ctx, \"gate.create\", args, \u0026result)\n return \u0026result, err\n}\n\nfunc (c *Client) GateList(ctx context.Context, args *GateListArgs) (*GateListResult, error) {\n var result GateListResult\n err := c.Call(ctx, \"gate.list\", args, \u0026result)\n return \u0026result, err\n}\n\nfunc (c *Client) GateWait(ctx context.Context, args *GateWaitArgs) (*GateWaitResult, error) {\n var result GateWaitResult\n err := c.Call(ctx, \"gate.wait\", args, \u0026result)\n return \u0026result, err\n}\n```\n\n### 5. Update cmd/bd/gate.go to use daemon\n\n```go\n// In gateCreateCmd Run:\nif daemonClient != nil {\n result, err := daemonClient.GateCreate(ctx, \u0026rpc.GateCreateArgs{\n Title: title,\n AwaitType: awaitType,\n AwaitID: awaitID,\n Timeout: timeout,\n Waiters: notifyAddrs,\n })\n if err != nil {\n FatalError(\"gate create: %v\", err)\n }\n gate = result.Issue\n} else {\n // Existing direct store code\n}\n```\n\n## Files to Modify\n\n1. **internal/rpc/protocol.go** - Add Gate*Args/Result types\n2. **internal/daemon/rpc_handler.go** - Add handler methods\n3. **internal/daemon/server.go** - Register methods\n4. **internal/rpc/client.go** - Add client methods\n5. **cmd/bd/gate.go** - Use daemon client when available\n\n## Testing\n\n```bash\n# Start daemon\nbd daemon start\n\n# Test via daemon (should work without --no-daemon)\nbd gate create --await timer:5m --notify beads/dave\nbd gate list\nbd gate wait \u003cid\u003e --notify beads/alice\n\n# Verify daemon handled it\nbd daemons logs . | grep gate\n```\n\n## Success Criteria\n- All gate commands work without --no-daemon\n- Same behavior in daemon vs direct mode\n- Waiters array updates correctly via RPC\n- Tests pass for RPC gate operations","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-23T12:13:25.778412-08:00","updated_at":"2025-12-23T13:45:58.398604-08:00","closed_at":"2025-12-23T13:45:58.398604-08:00","dependencies":[{"issue_id":"bd-likt","depends_on_id":"bd-udsi","type":"discovered-from","created_at":"2025-12-23T12:13:36.174822-08:00","created_by":"daemon"},{"issue_id":"bd-likt","depends_on_id":"bd-iz5t","type":"parent-child","created_at":"2025-12-23T12:44:07.891992-08:00","created_by":"daemon"}]} {"id":"bd-ljp1","title":"Merge: onyx-mjw4oxsi","description":"branch: polecat/onyx-mjw4oxsi\ntarget: main\nsource_issue: onyx-mjw4oxsi\nrig: beads\nagent_bead: gt-beads-polecat-onyx","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2026-01-01T16:25:15.980399-08:00","updated_at":"2026-01-01T16:28:05.728605-08:00","closed_at":"2026-01-01T16:28:05.728605-08:00","close_reason":"Branch dropped - changes already upstream (but didn't fix the actual test isolation issue)","created_by":"beads/polecats/onyx"} @@ -822,16 +822,16 @@ {"id":"bd-qqc.8","title":"Create and push git tag v{{version}}","description":"Create the release tag and push it:\n\n```bash\ngit tag v{{version}}\ngit push origin v{{version}}\n```\n\nThis triggers the GoReleaser GitHub Action to build release binaries.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:34.659927-08:00","updated_at":"2025-12-24T16:25:30.608841-08:00","dependencies":[{"issue_id":"bd-qqc.8","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:34.660248-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.8","depends_on_id":"bd-vgi5","type":"blocks","created_at":"2025-12-18T22:43:21.209529-08:00","created_by":"daemon"}],"deleted_at":"2025-12-24T16:25:30.608841-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} {"id":"bd-qqc.9","title":"Update Homebrew formula","description":"Update the Homebrew tap with new version:\n\n```bash\n./scripts/update-homebrew.sh {{version}}\n```\n\nThis script waits for GitHub Actions to complete (~5 min), then updates the formula with new SHA256 hashes.\n\nAfter running, verify the formula with:\n\n```bash\nbrew info steveyegge/beads/bd\n```","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-18T22:42:35.815096-08:00","updated_at":"2025-12-24T16:25:30.525596-08:00","dependencies":[{"issue_id":"bd-qqc.9","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:42:35.816752-08:00","created_by":"daemon"},{"issue_id":"bd-qqc.9","depends_on_id":"bd-qqc.8","type":"blocks","created_at":"2025-12-18T22:43:21.332955-08:00","created_by":"daemon"}],"deleted_at":"2025-12-24T16:25:30.525596-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} {"id":"bd-qsbn","title":"swarm status: Handle external dependencies and error cases","description":"Three issues: (1) Silent error swallowing - GetDependencyRecords errors are silently continued, but analyzeEpicForSwarm returns errors. Inconsistent. (2) External dependencies ignored - if issue depends on something outside epic thats still open, we mark it Ready incorrectly. (3) Command usage string says [epic-id] (optional) but requires exactly 1 arg. File: cmd/bd/swarm.go","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-28T21:31:08.574846-08:00","updated_at":"2025-12-30T15:44:43.363959-08:00","closed_at":"2025-12-30T00:36:28.565331-08:00","close_reason":"Fixed all three issues: (1) Made error handling consistent - analyzeEpicForSwarm now adds warnings for GetDependencyRecords failures instead of returning errors. (2) External dependencies now checked in getSwarmStatus - open external deps block issues. (3) Usage strings fixed to use \u003cepic-id\u003e instead of [epic-id] for required arguments.","created_by":"beads/crew/emma"} -{"id":"bd-quw1","title":"Polecat phase handoff: gt done --phase-complete","description":"Add phase handoff protocol for polecats hitting gate steps.\n\n## Current Behavior\nPolecat runs all steps, blocks on external waits, times out.\n\n## New Behavior\n1. Polecat completes work up to gate step\n2. Polecat runs: gt done --phase-complete\n3. This signals: 'phase done, molecule awaiting gate'\n4. Witness recycles polecat (context freed)\n5. When gate closes, Witness dispatches new polecat\n6. New polecat continues from step after gate\n\n## Implementation\n- Add --phase-complete flag to gt done\n- Witness tracks molecules in 'awaiting-gate' state\n- When gate closes (via bd gate resolve), molecule unblocks\n- Dispatch logic resumes molecule with new polecat\n\n## Acceptance Criteria\n- [ ] gt done --phase-complete implemented\n- [ ] Witness tracks awaiting-gate molecules\n- [ ] Gate closure triggers molecule resume\n- [ ] New polecat picks up from correct step","notes":"Beads changes committed (9269325e):\n- bd gate add-waiter \u003cgate-id\u003e \u003cwaiter\u003e\n- bd gate show \u003cgate-id\u003e --json\n- Waiters field in RPC protocol\n\nGastown changes written but need separate commit (bd-gxb4):\n- gt done --phase-complete --gate flag\n- Witness PHASE_COMPLETE handler\n- AddGateWaiter in beads wrapper\n\nBlocked on bd-gxb4 for gastown commit.","status":"closed","priority":2,"issue_type":"task","created_at":"2026-01-02T13:27:42.298423-08:00","updated_at":"2026-01-04T15:22:07.769837-08:00","closed_at":"2026-01-02T16:46:55.671506-08:00","close_reason":"Complete: beads part (jasper) + gastown part (bd-gxb4/furiosa) both merged","created_by":"mayor","dependencies":[{"issue_id":"bd-quw1","depends_on_id":"bd-d1n1","type":"parent-child","created_at":"2026-01-02T13:28:18.599801-08:00","created_by":"mayor"},{"issue_id":"bd-quw1","depends_on_id":"bd-4k3c","type":"blocks","created_at":"2026-01-02T13:28:18.665709-08:00","created_by":"mayor"},{"issue_id":"bd-quw1","depends_on_id":"bd-gxb4","type":"blocks","created_at":"2026-01-02T16:36:55.38367-08:00","created_by":"beads/polecats/jasper"}]} +{"id":"bd-quw1","title":"Polecat phase handoff: gt done --phase-complete","description":"Add phase handoff protocol for polecats hitting gate steps.\n\n## Current Behavior\nPolecat runs all steps, blocks on external waits, times out.\n\n## New Behavior\n1. Polecat completes work up to gate step\n2. Polecat runs: gt done --phase-complete\n3. This signals: 'phase done, molecule awaiting gate'\n4. Witness recycles polecat (context freed)\n5. When gate closes, Witness dispatches new polecat\n6. New polecat continues from step after gate\n\n## Implementation\n- Add --phase-complete flag to gt done\n- Witness tracks molecules in 'awaiting-gate' state\n- When gate closes (via bd gate resolve), molecule unblocks\n- Dispatch logic resumes molecule with new polecat\n\n## Acceptance Criteria\n- [ ] gt done --phase-complete implemented\n- [ ] Witness tracks awaiting-gate molecules\n- [ ] Gate closure triggers molecule resume\n- [ ] New polecat picks up from correct step","notes":"Beads changes committed (9269325e):\n- bd gate add-waiter \u003cgate-id\u003e \u003cwaiter\u003e\n- bd gate show \u003cgate-id\u003e --json\n- Waiters field in RPC protocol\n\nGastown changes written but need separate commit (bd-gxb4):\n- gt done --phase-complete --gate flag\n- Witness PHASE_COMPLETE handler\n- AddGateWaiter in beads wrapper\n\nBlocked on bd-gxb4 for gastown commit.","status":"closed","priority":2,"issue_type":"task","created_at":"2026-01-02T13:27:42.298423-08:00","updated_at":"2026-01-04T15:22:07.769837-08:00","closed_at":"2026-01-02T16:46:55.671506-08:00","close_reason":"Complete: beads part (jasper) + gastown part (bd-gxb4/furiosa) both merged","created_by":"mayor","dependencies":[{"issue_id":"bd-quw1","depends_on_id":"bd-4k3c","type":"blocks","created_at":"2026-01-02T13:28:18.665709-08:00","created_by":"mayor"},{"issue_id":"bd-quw1","depends_on_id":"bd-gxb4","type":"blocks","created_at":"2026-01-02T16:36:55.38367-08:00","created_by":"beads/polecats/jasper"},{"issue_id":"bd-quw1","depends_on_id":"bd-d1n1","type":"parent-child","created_at":"2026-01-02T13:28:18.599801-08:00","created_by":"mayor"}]} {"id":"bd-qvpn","title":"Merge: jasper-1767138512869","description":"branch: polecat/jasper-1767138512869\ntarget: main\nsource_issue: jasper-1767138512869\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T15:51:49.011389-08:00","updated_at":"2025-12-30T18:12:30.968698-08:00","closed_at":"2025-12-30T18:11:08.036693-08:00","created_by":"beads/polecats/jasper"} {"id":"bd-qy37","title":"Work on gt-8tmz.36: Validate expanded step IDs are unique...","description":"Work on gt-8tmz.36: Validate expanded step IDs are unique. After ApplyExpansions in internal/formula/expand.go, new steps can be created that might have duplicate IDs. Add validation in ApplyExpansions to check for duplicate step IDs after expansion. If duplicates found, return an error with the duplicate IDs. Add test in expand_test.go. When done, commit and push to main.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-25T20:01:27.048018-08:00","updated_at":"2025-12-25T20:04:42.594254-08:00","closed_at":"2025-12-25T20:04:42.594254-08:00"} {"id":"bd-r06v","title":"Merge: bd-phtv","description":"branch: polecat/Pinner\ntarget: main\nsource_issue: bd-phtv\nrig: beads","status":"closed","priority":1,"issue_type":"merge-request","created_at":"2025-12-23T13:48:16.853715-08:00","updated_at":"2025-12-23T19:12:08.342414-08:00","closed_at":"2025-12-23T19:12:08.342414-08:00"} {"id":"bd-r22t","title":"Execute molecule bd-mol-xga: Release beads 0.37.0","description":"Execute molecule bd-mol-xga: Release beads 0.37.0","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-26T01:12:48.454295-08:00","updated_at":"2026-01-04T23:49:29.777567-08:00","dependencies":[{"issue_id":"bd-r22t","depends_on_id":"bd-mol-xga","type":"blocks","created_at":"2025-12-26T01:13:17.380653-08:00","created_by":"daemon"}],"deleted_at":"2026-01-04T23:49:29.777567-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} -{"id":"bd-r24e","title":"Gate-aware beads-release.formula v2","description":"Rewrite beads-release.formula.toml with gates for async waits.\n\n## Design\nSee ultrathink analysis in bd-d1n1 epic.\n\n## Key Changes\n1. Split into phases: Prep, Gate, Verify, Install\n2. await-ci step with gate.type=gh:run\n3. Parallel verification after gate (verify-github, verify-npm, verify-pypi)\n4. Fan-in at local-install\n\n## Formula Structure\n```toml\n# Phase 1: Prep \u0026 Push\n[[steps]]\nid = \"push-tag\"\n...\n\n# Gate: CI Completion \n[[steps]]\nid = \"await-ci\"\nneeds = [\"push-tag\"]\n[steps.gate]\ntype = \"gh:run\"\nworkflow = \"release.yml\"\ntimeout = \"30m\"\n\n# Phase 2: Verify (parallel)\n[[steps]]\nid = \"verify-github\"\nneeds = [\"await-ci\"]\n...\n```\n\n## Acceptance Criteria\n- [ ] Formula uses gate syntax\n- [ ] Phases cleanly separated\n- [ ] Parallel verification works\n- [ ] Successfully releases beads","status":"closed","priority":2,"issue_type":"task","created_at":"2026-01-02T13:27:42.414518-08:00","updated_at":"2026-01-04T15:22:07.770475-08:00","closed_at":"2026-01-02T16:52:15.309685-08:00","close_reason":"Formula v2 complete with gate syntax, phases, and parallel verification","created_by":"mayor","dependencies":[{"issue_id":"bd-r24e","depends_on_id":"bd-z6kw","type":"blocks","created_at":"2026-01-02T13:28:18.732758-08:00","created_by":"mayor"},{"issue_id":"bd-r24e","depends_on_id":"bd-d1n1","type":"parent-child","created_at":"2026-01-02T13:28:18.643128-08:00","created_by":"mayor"},{"issue_id":"bd-r24e","depends_on_id":"bd-quw1","type":"blocks","created_at":"2026-01-02T13:28:18.711394-08:00","created_by":"mayor"}]} +{"id":"bd-r24e","title":"Gate-aware beads-release.formula v2","description":"Rewrite beads-release.formula.toml with gates for async waits.\n\n## Design\nSee ultrathink analysis in bd-d1n1 epic.\n\n## Key Changes\n1. Split into phases: Prep, Gate, Verify, Install\n2. await-ci step with gate.type=gh:run\n3. Parallel verification after gate (verify-github, verify-npm, verify-pypi)\n4. Fan-in at local-install\n\n## Formula Structure\n```toml\n# Phase 1: Prep \u0026 Push\n[[steps]]\nid = \"push-tag\"\n...\n\n# Gate: CI Completion \n[[steps]]\nid = \"await-ci\"\nneeds = [\"push-tag\"]\n[steps.gate]\ntype = \"gh:run\"\nworkflow = \"release.yml\"\ntimeout = \"30m\"\n\n# Phase 2: Verify (parallel)\n[[steps]]\nid = \"verify-github\"\nneeds = [\"await-ci\"]\n...\n```\n\n## Acceptance Criteria\n- [ ] Formula uses gate syntax\n- [ ] Phases cleanly separated\n- [ ] Parallel verification works\n- [ ] Successfully releases beads","status":"closed","priority":2,"issue_type":"task","created_at":"2026-01-02T13:27:42.414518-08:00","updated_at":"2026-01-04T15:22:07.770475-08:00","closed_at":"2026-01-02T16:52:15.309685-08:00","close_reason":"Formula v2 complete with gate syntax, phases, and parallel verification","created_by":"mayor","dependencies":[{"issue_id":"bd-r24e","depends_on_id":"bd-d1n1","type":"parent-child","created_at":"2026-01-02T13:28:18.643128-08:00","created_by":"mayor"},{"issue_id":"bd-r24e","depends_on_id":"bd-quw1","type":"blocks","created_at":"2026-01-02T13:28:18.711394-08:00","created_by":"mayor"},{"issue_id":"bd-r24e","depends_on_id":"bd-z6kw","type":"blocks","created_at":"2026-01-02T13:28:18.732758-08:00","created_by":"mayor"}]} {"id":"bd-r2n1","title":"Add integration tests for RPC server and event loops","description":"After adding basic unit tests for daemon utilities, the complex daemon functions still need integration tests:\n\nCore daemon lifecycle:\n- startRPCServer: Initializes and starts RPC server with proper error handling\n- runEventLoop: Polling-based sync loop with parent monitoring and signal handling\n- runDaemonLoop: Main daemon initialization and setup\n\nHealth checking:\n- isDaemonHealthy: Checks daemon responsiveness and health metrics\n- checkDaemonHealth: Periodic health verification\n\nThese require more complex test infrastructure (mock RPC, test contexts, signal handling) and should be tackled after the unit test foundation is in place.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T12:28:56.022996362-07:00","updated_at":"2025-12-18T12:44:32.167862713-07:00","closed_at":"2025-12-18T12:44:32.167862713-07:00","dependencies":[{"issue_id":"bd-r2n1","depends_on_id":"bd-4or","type":"discovered-from","created_at":"2025-12-18T12:28:56.045893852-07:00","created_by":"mhwilkie"}]} {"id":"bd-r36u","title":"gt mq list shows empty when MRs exist","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-20T01:13:07.561256-08:00","updated_at":"2025-12-21T17:51:25.891037-08:00","closed_at":"2025-12-21T17:51:25.891037-08:00"} {"id":"bd-r46","title":"Support --reason flag in daemon mode for reopen command","description":"The reopen.go command has a TODO at line 61 to add reason as a comment once RPC supports AddComment. Currently --reason flag is ignored in daemon mode with a warning.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-11-21T18:55:10.773626-05:00","updated_at":"2025-12-21T21:47:15.43375-08:00","closed_at":"2025-12-21T21:47:15.43375-08:00"} -{"id":"bd-r4sn","title":"Phase 2.5: TOON-based daemon sync","description":"Implement TOON-native daemon sync (replaces JSONL sync machinery).\n\n## Overview\nDaemon sync is the final integration point. Replace export/import/merge machinery with TOON-native sync, building on deletion tracking (2.3) and merge optimization (2.4).\n\n## Required Work\n\n### 2.5.1 TOON-based Daemon Sync\n- [ ] Understand current JSONL sync machinery (export.go, import.go, merge.go)\n- [ ] Replace export step with TOON encoding (EncodeTOON)\n- [ ] Replace import step with TOON decoding (DecodeTOON)\n- [ ] Replace merge step with TOON-aware 3-way merge\n- [ ] Update daemon auto-sync to read/write TOON\n- [ ] Verify 5-second debounce still works\n\n### 2.5.2 Deletion Sync Integration\n- [ ] Load deletions.toon during import phase\n- [ ] Apply deletions after merging issues\n- [ ] Ensure deletion TTL respects daemon schedule\n\n### 2.5.3 Testing\n- [ ] Unit tests for daemon sync with TOON\n- [ ] Integration tests with actual daemon operations\n- [ ] Multi-clone sync scenarios with concurrent edits\n- [ ] Performance comparison with JSONL sync\n- [ ] Long-running daemon stability tests\n\n## Success Criteria\n- Daemon reads/writes TOON format (not JSONL)\n- Sync latency comparable to JSONL (\u003c100ms)\n- All 70+ tests passing\n- bdt commands work seamlessly with daemon\n- Multi-clone sync scenarios work correctly","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T14:43:20.33132177-07:00","updated_at":"2025-12-21T14:42:25.274362-08:00","closed_at":"2025-12-21T14:42:25.274362-08:00","dependencies":[{"issue_id":"bd-r4sn","depends_on_id":"bd-uz8r","type":"blocks","created_at":"2025-12-19T14:43:20.347724699-07:00","created_by":"daemon"},{"issue_id":"bd-r4sn","depends_on_id":"bd-uwkp","type":"blocks","created_at":"2025-12-19T14:43:20.355379309-07:00","created_by":"daemon"}]} +{"id":"bd-r4sn","title":"Phase 2.5: TOON-based daemon sync","description":"Implement TOON-native daemon sync (replaces JSONL sync machinery).\n\n## Overview\nDaemon sync is the final integration point. Replace export/import/merge machinery with TOON-native sync, building on deletion tracking (2.3) and merge optimization (2.4).\n\n## Required Work\n\n### 2.5.1 TOON-based Daemon Sync\n- [ ] Understand current JSONL sync machinery (export.go, import.go, merge.go)\n- [ ] Replace export step with TOON encoding (EncodeTOON)\n- [ ] Replace import step with TOON decoding (DecodeTOON)\n- [ ] Replace merge step with TOON-aware 3-way merge\n- [ ] Update daemon auto-sync to read/write TOON\n- [ ] Verify 5-second debounce still works\n\n### 2.5.2 Deletion Sync Integration\n- [ ] Load deletions.toon during import phase\n- [ ] Apply deletions after merging issues\n- [ ] Ensure deletion TTL respects daemon schedule\n\n### 2.5.3 Testing\n- [ ] Unit tests for daemon sync with TOON\n- [ ] Integration tests with actual daemon operations\n- [ ] Multi-clone sync scenarios with concurrent edits\n- [ ] Performance comparison with JSONL sync\n- [ ] Long-running daemon stability tests\n\n## Success Criteria\n- Daemon reads/writes TOON format (not JSONL)\n- Sync latency comparable to JSONL (\u003c100ms)\n- All 70+ tests passing\n- bdt commands work seamlessly with daemon\n- Multi-clone sync scenarios work correctly","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T14:43:20.33132177-07:00","updated_at":"2025-12-21T14:42:25.274362-08:00","closed_at":"2025-12-21T14:42:25.274362-08:00","dependencies":[{"issue_id":"bd-r4sn","depends_on_id":"bd-uwkp","type":"blocks","created_at":"2025-12-19T14:43:20.355379309-07:00","created_by":"daemon"},{"issue_id":"bd-r4sn","depends_on_id":"bd-uz8r","type":"blocks","created_at":"2025-12-19T14:43:20.347724699-07:00","created_by":"daemon"}]} {"id":"bd-r6a","title":"Redesign workflow system: templates as native Beads","description":"## Problem\n\nThe current workflow system (YAML templates in cmd/bd/templates/workflows/) is architecturally flawed:\n\n1. **Out-of-band data plane** - YAML files are a parallel system outside Beads itself\n2. **Heavyweight DSL** - YAML is gross; even TOML would have been better, but neither is ideal\n3. **Not graph-native** - Beads IS already a dependency graph with priorities, so why reinvent it?\n4. **Can't use bd commands on templates** - They're opaque YAML, not viewable/editable Beads\n\n## The Right Design\n\n**Templates should be Beads themselves.**\n\nA \"workflow template\" should be:\n- An epic marked as a template (via label, type, or prefix like `tpl-`)\n- Child issues with dependencies between them (using normal bd dep)\n- Titles and descriptions containing `{{variable}}` placeholders\n- Normal priorities that control serialization order\n\n\"Instantiation\" becomes:\n1. Clone the template subgraph (epic + children + dependencies)\n2. Substitute variables in titles/descriptions\n3. Generate new IDs for all cloned issues\n4. Return the new epic ID\n\n## Benefits\n\n- **No YAML** - Templates are just Beads\n- **Use existing tools** - `bd show`, `bd edit`, `bd dep` work on templates\n- **Graph-native** - Dependencies are real Beads dependencies\n- **Simpler codebase** - Remove all the YAML parsing/workflow code\n- **Composable** - Templates can reference other templates\n\n## Tasks\n\n1. Delete the YAML workflow system code (revert recent push + remove existing workflow code)\n2. Design template marking convention (label? type? id prefix?)\n3. Implement `bd template create` or `bd clone --as-template`\n4. Implement `bd template instantiate \u003ctemplate-id\u003e --var key=value`\n5. Migrate version-bump workflow to native Beads template\n6. Update documentation","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-17T22:41:57.359643-08:00","updated_at":"2025-12-18T17:42:26.000769-08:00","closed_at":"2025-12-18T13:47:04.632525-08:00"} {"id":"bd-r6a.1","title":"Revert/remove YAML workflow system","description":"Revert the recent commit and remove all YAML workflow code:\n\n1. `git revert aae8407a` (the commit we just pushed with workflow fixes)\n2. Remove `cmd/bd/templates/workflows/` directory\n3. Remove workflow.go or gut it to minimal stub\n4. Remove WorkflowTemplate types from internal/types/workflow.go\n5. Remove any workflow-related RPC handlers\n\nKeep only minimal scaffolding if needed for the new template system.","status":"tombstone","priority":0,"issue_type":"task","created_at":"2025-12-17T22:42:07.339684-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","dependencies":[{"issue_id":"bd-r6a.1","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:42:07.340117-08:00","created_by":"daemon"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} {"id":"bd-r6a.2","title":"Implement subgraph cloning with variable substitution","description":"Core implementation of template instantiation:\n\n1. Add `bd template instantiate \u003ctemplate-id\u003e [--var key=value]...` command\n2. Implement subgraph loading:\n - Load template epic\n - Recursively load all children (and their children)\n - Load all dependencies between issues in the subgraph\n3. Implement variable substitution:\n - Scan titles and descriptions for `{{name}}` patterns\n - Replace with provided values\n - Error on missing required variables (or prompt interactively)\n4. Implement cloning:\n - Generate new IDs for all issues\n - Create cloned issues with substituted text\n - Remap and create dependencies\n5. Return the new epic ID\n\nConsider adding `--dry-run` flag to preview what would be created.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-17T22:43:25.179848-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","dependencies":[{"issue_id":"bd-r6a.2","depends_on_id":"bd-r6a","type":"parent-child","created_at":"2025-12-17T22:43:25.180286-08:00","created_by":"daemon"},{"issue_id":"bd-r6a.2","depends_on_id":"bd-r6a.1","type":"blocks","created_at":"2025-12-17T22:44:03.15413-08:00","created_by":"daemon"}],"deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task"} @@ -844,7 +844,7 @@ {"id":"bd-rgd7","title":"Update CHANGELOG.md with release notes","description":"Add release notes for 0.32.1: MCP output control params (#667), pin field fix","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:16.031879-08:00","updated_at":"2025-12-20T21:54:07.982164-08:00","closed_at":"2025-12-20T21:54:07.982164-08:00","dependencies":[{"issue_id":"bd-rgd7","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:16.034926-08:00","created_by":"daemon"}]} {"id":"bd-rgyd","title":"Split internal/storage/sqlite/queries.go (1586 lines)","description":"Split internal/storage/sqlite/queries.go (1704 lines) into logical modules.\n\n## Current State\nqueries.go is 1704 lines with mixed responsibilities:\n- Issue CRUD operations\n- Search/filter operations\n- Delete operations (complex cascade logic)\n- Helper functions (parsing, formatting)\n\n## Proposed Split\n\n### 1. queries.go (keep ~400 lines) - Core CRUD\n```go\n// Core issue operations\nfunc (s *SQLiteStorage) CreateIssue(...)\nfunc (s *SQLiteStorage) GetIssue(...)\nfunc (s *SQLiteStorage) UpdateIssue(...)\nfunc (s *SQLiteStorage) CloseIssue(...)\n```\n\n### 2. queries_search.go (~300 lines) - Search/Filter\n```go\n// Search and filtering\nfunc (s *SQLiteStorage) SearchIssues(...)\nfunc (s *SQLiteStorage) GetIssueByExternalRef(...)\nfunc (s *SQLiteStorage) GetCloseReason(...)\nfunc (s *SQLiteStorage) GetCloseReasonsForIssues(...)\n```\n\n### 3. queries_delete.go (~400 lines) - Delete Operations\n```go\n// Delete operations with cascade logic\nfunc (s *SQLiteStorage) CreateTombstone(...)\nfunc (s *SQLiteStorage) DeleteIssue(...)\nfunc (s *SQLiteStorage) DeleteIssues(...)\nfunc (s *SQLiteStorage) resolveDeleteSet(...)\nfunc (s *SQLiteStorage) expandWithDependents(...)\nfunc (s *SQLiteStorage) validateNoDependents(...)\nfunc (s *SQLiteStorage) checkSingleIssueValidation(...)\nfunc (s *SQLiteStorage) trackOrphanedIssues(...)\nfunc (s *SQLiteStorage) collectOrphansForID(...)\nfunc (s *SQLiteStorage) populateDeleteStats(...)\nfunc (s *SQLiteStorage) executeDelete(...)\nfunc (s *SQLiteStorage) findAllDependentsRecursive(...)\n```\n\n### 4. queries_helpers.go (~100 lines) - Utilities\n```go\n// Helper functions (already at top of file)\nfunc parseNullableTimeString(...)\nfunc parseJSONStringArray(...)\nfunc formatJSONStringArray(...)\n```\n\n### 5. queries_rename.go (~100 lines) - ID/Prefix Operations\n```go\n// ID and prefix management\nfunc (s *SQLiteStorage) UpdateIssueID(...)\nfunc (s *SQLiteStorage) RenameDependencyPrefix(...)\nfunc (s *SQLiteStorage) RenameCounterPrefix(...)\nfunc (s *SQLiteStorage) ResetCounter(...)\n```\n\n## Implementation Steps\n\n1. **Create new files** with package declaration:\n ```go\n // queries_delete.go\n package sqlite\n \n import (...)\n ```\n\n2. **Move functions** - cut/paste, maintaining order within each file\n\n3. **Update imports** - each file needs its own imports\n\n4. **Run tests** after each file split:\n ```bash\n go test ./internal/storage/sqlite/...\n ```\n\n5. **Run linter** to catch any issues:\n ```bash\n golangci-lint run ./internal/storage/sqlite/...\n ```\n\n## File Organization\n```\ninternal/storage/sqlite/\n├── queries.go # Core CRUD (~400 lines)\n├── queries_search.go # Search/filter (~300 lines)\n├── queries_delete.go # Delete cascade (~400 lines)\n├── queries_helpers.go # Utilities (~100 lines)\n└── queries_rename.go # ID operations (~100 lines)\n```\n\n## Success Criteria\n- No file \u003e 500 lines\n- All tests pass\n- No functionality changes\n- Clear separation of concerns","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-16T18:17:23.85869-08:00","updated_at":"2025-12-23T13:40:51.62551-08:00","closed_at":"2025-12-23T13:40:51.62551-08:00","dependencies":[{"issue_id":"bd-rgyd","depends_on_id":"bd-iz5t","type":"parent-child","created_at":"2025-12-23T12:44:07.50733-08:00","created_by":"daemon"}]} {"id":"bd-rinx","title":"Witness should auto-nuke idle polecats, not escalate","description":"When witness detects an idle polecat with no work, it escalates to Mayor asking what to do.\n\nExpected: Witness should nuke idle polecats automatically if:\n1. No work hooked\n2. No uncommitted/unpushed changes (cleanup_status=clean)\n3. Idle for \u003ethreshold (e.g., 5 minutes)\n\nOnly escalate if polecat has unsaved work that needs recovery.\n\nCurrent behavior creates unnecessary mail noise for the Mayor.","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-30T21:21:57.918823-08:00","updated_at":"2025-12-31T00:21:22.701781-08:00","closed_at":"2025-12-31T00:21:22.701781-08:00","close_reason":"Added Step 3a to witness patrol formula for auto-nuke of idle polecats with clean git state","created_by":"mayor"} -{"id":"bd-rl5t","title":"Integration test: agent waits for CI via gate","description":"End-to-end test of the gate workflow.\n\n## Test Scenario\n1. Agent creates gate: bd gate create --await gh:run:123 --timeout 5m --notify beads/dave\n2. Agent writes handoff and exits\n3. Deacon patrol checks gate condition\n4. (Mock) GitHub run completes\n5. Deacon notifies waiter and closes gate\n6. New agent session reads mail and resumes\n\n## Test Requirements\n- Mock GitHub API responses\n- Test timeout path\n- Test multiple waiters\n- Verify mail notifications sent","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T11:44:41.725752-08:00","updated_at":"2025-12-23T12:24:08.346347-08:00","closed_at":"2025-12-23T12:24:08.346347-08:00","dependencies":[{"issue_id":"bd-rl5t","depends_on_id":"bd-udsi","type":"parent-child","created_at":"2025-12-23T11:44:53.157037-08:00","created_by":"daemon"},{"issue_id":"bd-rl5t","depends_on_id":"bd-2l03","type":"blocks","created_at":"2025-12-23T11:44:56.674866-08:00","created_by":"daemon"},{"issue_id":"bd-rl5t","depends_on_id":"bd-ykqu","type":"blocks","created_at":"2025-12-23T11:44:56.753264-08:00","created_by":"daemon"}]} +{"id":"bd-rl5t","title":"Integration test: agent waits for CI via gate","description":"End-to-end test of the gate workflow.\n\n## Test Scenario\n1. Agent creates gate: bd gate create --await gh:run:123 --timeout 5m --notify beads/dave\n2. Agent writes handoff and exits\n3. Deacon patrol checks gate condition\n4. (Mock) GitHub run completes\n5. Deacon notifies waiter and closes gate\n6. New agent session reads mail and resumes\n\n## Test Requirements\n- Mock GitHub API responses\n- Test timeout path\n- Test multiple waiters\n- Verify mail notifications sent","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T11:44:41.725752-08:00","updated_at":"2025-12-23T12:24:08.346347-08:00","closed_at":"2025-12-23T12:24:08.346347-08:00","dependencies":[{"issue_id":"bd-rl5t","depends_on_id":"bd-ykqu","type":"blocks","created_at":"2025-12-23T11:44:56.753264-08:00","created_by":"daemon"},{"issue_id":"bd-rl5t","depends_on_id":"bd-udsi","type":"parent-child","created_at":"2025-12-23T11:44:53.157037-08:00","created_by":"daemon"},{"issue_id":"bd-rl5t","depends_on_id":"bd-2l03","type":"blocks","created_at":"2025-12-23T11:44:56.674866-08:00","created_by":"daemon"}]} {"id":"bd-rm8m","title":"Refinery Patrol","description":"Merge queue processor patrol loop with verification gates.","status":"open","priority":2,"issue_type":"molecule","created_at":"2025-12-30T19:23:45.503188-08:00","updated_at":"2025-12-30T19:23:45.503188-08:00","created_by":"deacon"} {"id":"bd-rnnr","title":"BondRef data model for compound lineage","description":"Add data model support for tracking compound molecule lineage.\n\nNEW FIELDS on Issue:\n bonded_from: []BondRef // For compounds: constituent protos\n\nNEW TYPE:\n type BondRef struct {\n ProtoID string // Source proto ID\n BondType string // sequential, parallel, conditional\n BondPoint string // Attachment site (issue ID or empty for root)\n }\n\nJSONL SERIALIZATION:\n {\n \"id\": \"proto-feature-tested\",\n \"title\": \"Feature with tests\",\n \"bonded_from\": [\n {\"proto_id\": \"proto-feature\", \"bond_type\": \"root\"},\n {\"proto_id\": \"proto-testing\", \"bond_type\": \"sequential\"}\n ],\n ...\n }\n\nQUERIES:\n- GetCompoundConstituents(id) → []BondRef\n- IsCompound(id) → bool\n- GetCompoundsUsing(protoID) → []Issue // Reverse lookup","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-21T00:59:38.582509-08:00","updated_at":"2025-12-21T01:19:43.922416-08:00","closed_at":"2025-12-21T01:19:43.922416-08:00","dependencies":[{"issue_id":"bd-rnnr","depends_on_id":"bd-o5xe","type":"parent-child","created_at":"2025-12-21T00:59:51.234246-08:00","created_by":"daemon"}]} {"id":"bd-rp4o","title":"Deleted issues resurrect during bd sync (tombstones not propagating)","description":"## Problem\n\nWhen issues are deleted with bd delete --force, they get deleted from the local DB but resurrect during the next bd sync.\n\n## Reproduction\n\n1. Observe orphan warnings (bd-cb64c226.*, bd-cbed9619.*)\n2. Delete them: bd delete bd-cb64c226.1 ... --force\n3. Run bd sync\n4. Orphan warnings reappear - issues were resurrected!\n\n## Root Cause Hypothesis\n\nThe sync branch workflow (beads-sync) has the old state before deletions. When bd sync pulls from beads-sync and copies JSONL to main, the deleted issues are re-imported.\n\nTombstones may not be properly:\n1. Written to beads-sync during export\n2. Propagated during pull/merge\n3. Honored during import\n\n## Related\n\n- bd-7b7h: chicken-and-egg sync.branch bug (same workflow)\n- bd-ncwo: ID-based fallback matching to prevent ghost resurrection\n\n## Files to Investigate\n\n- cmd/bd/sync.go (export/import flow)\n- internal/syncbranch/worktree.go (PullFromSyncBranch, copyJSONLToMainRepo)\n- internal/importer/ (tombstone handling)","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T23:09:43.072696-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} @@ -856,9 +856,9 @@ {"id":"bd-rze6","title":"Digest: Release v0.34.0 @ 2025-12-22 12:16","description":"Released v0.34.0: wisp commands, chemistry UX, cross-project deps","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-22T12:16:53.033119-08:00","updated_at":"2025-12-22T12:16:53.033119-08:00","closed_at":"2025-12-22T12:16:53.033025-08:00"} {"id":"bd-s00m","title":"Add 'hooked' status for GUPP work assignment","description":"## Summary\n\nSeparate the semantics of `pinned` (identity records) from work-on-hook (GUPP assignment).\n\n**Current problem:** `pinned` is overloaded to mean both:\n1. Agent identity beads (gt-mayor, gt-crew-gastown-max) - should never block\n2. Work attached to an agent's hook - should block until closed\n\nThe blocking logic excludes `pinned` from blocking, which means work on hooks doesn't block its dependents.\n\n## Semantic Split\n\n| Status | Meaning | Blocks dependents? |\n|--------|---------|-------------------|\n| `pinned` | Domain table / identity record (agents, roles) | No |\n| `hooked` | Work on an agent's hook (GUPP invoked) | Yes |\n\n**Terminology:**\n- **Pin** (verb): Establish a permanent identity record\n- **Hook** (verb): Attach work to an agent's hook\n- **Sling** (verb): The act of hooking work to an agent\n\n## Lifecycles\n\n**Molecule** (the work):\n open -\u003e hooked -\u003e closed\n\n**Persistent agent** (Mayor, Witness, Crew):\n idle \u003c-\u003e working (cycles)\nAgent bead stays pinned. Operational state derived from hook slot occupancy.\n\n**Polecat** (ephemeral worker):\n spawned-with-work -\u003e working -\u003e despawning\nPolecats never idle - spawned for one molecule, nuked after.\n\nThe `hooked` status belongs to the **molecule**, not the agent. Agent identity beads remain `pinned` throughout their existence.\n\n## in_progress vs hooked\n\nBoth remain valid statuses with different semantics:\n- `in_progress` = Soft claim, cooperative (humans juggling multiple issues)\n- `hooked` = Hard claim, GUPP-driven (molecule on agent's hook)\n\nGas Town molecules use `hooked`. Humans/non-Gas Town workflows may use `in_progress`.\n\n## Success Criteria\n\n1. `hooked` is a valid status in beads schema\n2. Blocking logic treats `hooked` as blocking (like `in_progress`)\n3. gt sling sets status=hooked on the molecule (not pinned)\n4. Existing pinned work items migrated to hooked where appropriate\n5. Agent/role beads remain pinned and non-blocking","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-12-28T22:16:37.66048-08:00","updated_at":"2025-12-28T22:36:19.769137-08:00","closed_at":"2025-12-28T22:36:19.769137-08:00","created_by":"stevey"} {"id":"bd-s00m.1","title":"Schema: Add 'hooked' as valid status","description":"Add 'hooked' to the valid status enum in the beads schema.\n\n## Files to Update\n\n1. `internal/types/types.go` - Add StatusHooked constant\n2. `internal/storage/sqlite/schema.go` - Add 'hooked' to CHECK constraint\n3. `internal/storage/sqlite/migrations/` - New migration to alter constraint\n\n## Status Values After Change\n\n- open\n- in_progress\n- blocked\n- deferred\n- hooked (NEW)\n- closed\n- pinned\n- tombstone\n\n## Validation\n\n- bd update \u003cid\u003e --status=hooked should work\n- bd list --status=hooked should filter correctly","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-28T22:16:56.596014-08:00","updated_at":"2025-12-28T22:30:39.09597-08:00","closed_at":"2025-12-28T22:30:39.09597-08:00","created_by":"stevey","dependencies":[{"issue_id":"bd-s00m.1","depends_on_id":"bd-s00m","type":"parent-child","created_at":"2025-12-28T22:16:56.596584-08:00","created_by":"daemon"}]} -{"id":"bd-s00m.2","title":"Blocking logic: Include 'hooked' in blocking statuses","description":"Update the blocked_cache.go SQL to treat 'hooked' as a blocking status.\n\n## Current Logic (line ~163)\n\n```sql\nblocker.status IN ('open', 'in_progress', 'blocked', 'deferred')\n```\n\n## Updated Logic\n\n```sql\nblocker.status IN ('open', 'in_progress', 'blocked', 'deferred', 'hooked')\n```\n\n## Files to Update\n\n- internal/storage/sqlite/blocked_cache.go\n\n## Test Cases\n\n1. Issue A (hooked) blocks Issue B → B should NOT appear in bd ready\n2. Issue A (pinned, type=agent) → B should appear in bd ready\n3. Issue A (hooked) closed → B should appear in bd ready","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-28T22:16:56.809269-08:00","updated_at":"2025-12-28T22:32:27.742984-08:00","closed_at":"2025-12-28T22:32:27.742984-08:00","created_by":"stevey","dependencies":[{"issue_id":"bd-s00m.2","depends_on_id":"bd-s00m","type":"parent-child","created_at":"2025-12-28T22:16:56.809716-08:00","created_by":"daemon"},{"issue_id":"bd-s00m.2","depends_on_id":"bd-s00m.1","type":"blocks","created_at":"2025-12-28T22:17:22.129513-08:00","created_by":"daemon"}]} -{"id":"bd-s00m.3","title":"UI: Style 'hooked' status in bd list output","description":"Add styling for 'hooked' status in bd list and bd show output.\n\n## Semantic\n\n'hooked' means actively being worked by an agent (GUPP). Should be visually prominent.\n\n## Suggested Styling\n\n- Color: Cyan or bright blue (active, in-flight)\n- Distinct from 'in_progress' (which is more passive/cooperative)\n\n## Files to Update\n\n- internal/ui/styles.go - Add case for 'hooked' status","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-28T22:16:57.019828-08:00","updated_at":"2025-12-28T22:34:31.132171-08:00","closed_at":"2025-12-28T22:34:31.132171-08:00","created_by":"stevey","dependencies":[{"issue_id":"bd-s00m.3","depends_on_id":"bd-s00m","type":"parent-child","created_at":"2025-12-28T22:16:57.020313-08:00","created_by":"daemon"},{"issue_id":"bd-s00m.3","depends_on_id":"bd-s00m.1","type":"blocks","created_at":"2025-12-28T22:17:22.148918-08:00","created_by":"daemon"}]} -{"id":"bd-s00m.4","title":"Migration: Convert pinned work items to hooked","description":"Migrate existing pinned beads that represent work-on-hook to use 'hooked' status.\n\n## Migration Logic\n\n```sql\nUPDATE issues \nSET status = 'hooked'\nWHERE status = 'pinned' \n AND issue_type NOT IN ('agent', 'role')\n```\n\n## What Stays Pinned\n\n- Agent identity beads (gt-mayor, gt-witness-gastown, etc.)\n- Role definition beads (gt-mayor-role, etc.)\n\n## What Becomes Hooked\n\n- Molecules on hooks (mol_type field set)\n- Regular issues/tasks that were pinned to hooks\n\n## Verification\n\nAfter migration:\n- bd list --status=pinned should only show agents/roles\n- bd list --status=hooked should show work on hooks","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-28T22:17:13.872171-08:00","updated_at":"2025-12-28T22:36:09.039612-08:00","closed_at":"2025-12-28T22:36:09.039612-08:00","created_by":"stevey","dependencies":[{"issue_id":"bd-s00m.4","depends_on_id":"bd-s00m.1","type":"blocks","created_at":"2025-12-28T22:17:22.168228-08:00","created_by":"daemon"},{"issue_id":"bd-s00m.4","depends_on_id":"bd-s00m","type":"parent-child","created_at":"2025-12-28T22:17:13.872786-08:00","created_by":"daemon"}]} +{"id":"bd-s00m.2","title":"Blocking logic: Include 'hooked' in blocking statuses","description":"Update the blocked_cache.go SQL to treat 'hooked' as a blocking status.\n\n## Current Logic (line ~163)\n\n```sql\nblocker.status IN ('open', 'in_progress', 'blocked', 'deferred')\n```\n\n## Updated Logic\n\n```sql\nblocker.status IN ('open', 'in_progress', 'blocked', 'deferred', 'hooked')\n```\n\n## Files to Update\n\n- internal/storage/sqlite/blocked_cache.go\n\n## Test Cases\n\n1. Issue A (hooked) blocks Issue B → B should NOT appear in bd ready\n2. Issue A (pinned, type=agent) → B should appear in bd ready\n3. Issue A (hooked) closed → B should appear in bd ready","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-28T22:16:56.809269-08:00","updated_at":"2025-12-28T22:32:27.742984-08:00","closed_at":"2025-12-28T22:32:27.742984-08:00","created_by":"stevey","dependencies":[{"issue_id":"bd-s00m.2","depends_on_id":"bd-s00m.1","type":"blocks","created_at":"2025-12-28T22:17:22.129513-08:00","created_by":"daemon"},{"issue_id":"bd-s00m.2","depends_on_id":"bd-s00m","type":"parent-child","created_at":"2025-12-28T22:16:56.809716-08:00","created_by":"daemon"}]} +{"id":"bd-s00m.3","title":"UI: Style 'hooked' status in bd list output","description":"Add styling for 'hooked' status in bd list and bd show output.\n\n## Semantic\n\n'hooked' means actively being worked by an agent (GUPP). Should be visually prominent.\n\n## Suggested Styling\n\n- Color: Cyan or bright blue (active, in-flight)\n- Distinct from 'in_progress' (which is more passive/cooperative)\n\n## Files to Update\n\n- internal/ui/styles.go - Add case for 'hooked' status","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-28T22:16:57.019828-08:00","updated_at":"2025-12-28T22:34:31.132171-08:00","closed_at":"2025-12-28T22:34:31.132171-08:00","created_by":"stevey","dependencies":[{"issue_id":"bd-s00m.3","depends_on_id":"bd-s00m.1","type":"blocks","created_at":"2025-12-28T22:17:22.148918-08:00","created_by":"daemon"},{"issue_id":"bd-s00m.3","depends_on_id":"bd-s00m","type":"parent-child","created_at":"2025-12-28T22:16:57.020313-08:00","created_by":"daemon"}]} +{"id":"bd-s00m.4","title":"Migration: Convert pinned work items to hooked","description":"Migrate existing pinned beads that represent work-on-hook to use 'hooked' status.\n\n## Migration Logic\n\n```sql\nUPDATE issues \nSET status = 'hooked'\nWHERE status = 'pinned' \n AND issue_type NOT IN ('agent', 'role')\n```\n\n## What Stays Pinned\n\n- Agent identity beads (gt-mayor, gt-witness-gastown, etc.)\n- Role definition beads (gt-mayor-role, etc.)\n\n## What Becomes Hooked\n\n- Molecules on hooks (mol_type field set)\n- Regular issues/tasks that were pinned to hooks\n\n## Verification\n\nAfter migration:\n- bd list --status=pinned should only show agents/roles\n- bd list --status=hooked should show work on hooks","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-28T22:17:13.872171-08:00","updated_at":"2025-12-28T22:36:09.039612-08:00","closed_at":"2025-12-28T22:36:09.039612-08:00","created_by":"stevey","dependencies":[{"issue_id":"bd-s00m.4","depends_on_id":"bd-s00m","type":"parent-child","created_at":"2025-12-28T22:17:13.872786-08:00","created_by":"daemon"},{"issue_id":"bd-s00m.4","depends_on_id":"bd-s00m.1","type":"blocks","created_at":"2025-12-28T22:17:22.168228-08:00","created_by":"daemon"}]} {"id":"bd-s0qf","title":"GH#405: Fix prefix parsing with hyphens - multi-hyphen prefixes parsed incorrectly","description":"Fixed: ExtractIssuePrefix was falling back to first-hyphen for word-like suffixes, breaking multi-hyphen prefixes like 'hacker-news' and 'me-py-toolkit'.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:13:56.951359-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-s1pz","title":"Merge: bd-u2sc.4","description":"branch: polecat/Logger\ntarget: main\nsource_issue: bd-u2sc.4\nrig: beads","status":"closed","priority":3,"issue_type":"merge-request","created_at":"2025-12-23T13:45:52.412757-08:00","updated_at":"2025-12-23T19:12:08.356689-08:00","closed_at":"2025-12-23T19:12:08.356689-08:00"} {"id":"bd-s2t","title":"wish: a 'continue' or similar cmd/flag which means alter last issue","description":"so many time I create an issue and then have another thought: 'oh, before I did X and it crashed there was ZZZ happening' or 'actually that is P4 not P2'. It would be nice if when `bd {cmd}` is used without a {title} or {id} it just adds or updates the most recently touched issue.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-08T06:46:37.529160416-07:00","updated_at":"2025-12-30T18:12:30.971727-08:00","closed_at":"2025-12-30T16:57:07.001784-08:00","close_reason":"Implemented last-touched tracking for update/close without ID"} @@ -885,11 +885,11 @@ {"id":"bd-ta4r","title":"Wisp operations should auto-bypass daemon","description":"During the v0.39.1 release, every wisp operation required --no-daemon flag:\n\nbd --no-daemon mol wisp create beads-release --var version=0.39.1\nbd --no-daemon close bd-eph-xxx\nbd --no-daemon mol burn bd-eph-bv2\n\nSince wisps are ephemeral (Ephemeral=true) and never exported to JSONL, they are inherently local-only. The daemon cannot help with them anyway.\n\nProposal: When operating on bd-eph-* issues or wisp subcommands, auto-detect and bypass the daemon. This would:\n- Reduce friction in wisp workflows\n- Prevent accidental daemon use that would fail anyway\n- Make the ephemeral nature more obvious","status":"closed","priority":3,"issue_type":"feature","created_at":"2025-12-27T22:51:24.409066-08:00","updated_at":"2025-12-28T02:10:30.123755-08:00","closed_at":"2025-12-28T02:10:30.123755-08:00","created_by":"beads/crew/emma"} {"id":"bd-tbz3","title":"bd init UX Improvements","description":"bd init leaves users with incomplete setup, requiring manual bd doctor --fix. Issues found: (1) git hooks not installed if user declines prompt, (2) no auto-migration when CLI is upgraded, (3) stale merge driver configs from old versions. Fix by making bd init more robust with better defaults and auto-migration.","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-11-21T23:16:00.333543-08:00","updated_at":"2025-12-23T04:20:51.88847-08:00","closed_at":"2025-12-23T04:20:51.88847-08:00"} {"id":"bd-tcvh","title":"Test prefix beads","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-27T14:24:41.707092-08:00","updated_at":"2025-12-27T14:24:50.421598-08:00","created_by":"stevey","deleted_at":"2025-12-27T14:24:50.421598-08:00","deleted_by":"daemon","delete_reason":"delete","original_type":"task"} -{"id":"bd-tggf","title":"Code Health Review Dec 2025: Technical Debt Cleanup","description":"Epic grouping technical debt identified in the Dec 16, 2025 code health review.\n\n## Overall Health Grade: B (Solid foundation, needs cleanup)\n\n### P1 (High Priority):\n- bd-74w1: Consolidate duplicate path-finding utilities\n- [deleted:bd-b6xo]: Remove/fix ClearDirtyIssues() race condition\n- [deleted:bd-b3og]: Fix TestImportBugIntegration deadlock\n\n### P2 (Medium Priority):\n- bd-05a8: Split large files (doctor.go, sync.go)\n- bd-qioh: Standardize error handling patterns\n- bd-rgyd: Split queries.go (1586 lines)\n- bd-9g1z: Fix/remove TestFindJSONLPathDefault\n\n### P3 (Low Priority):\n- bd-ork0: Add comments to 30+ ignored errors\n- bd-4nqq: Remove dead test code in info_test.go\n- bd-dhza: Reduce global state in main.go\n\n## Key Areas:\n1. Code duplication in path utilities\n2. Large monolithic files (5 files \u003e1000 lines)\n3. Global state (25+ variables, 3 deprecated)\n4. Silent error suppression (30+ instances)\n5. Test gaps and dead test code\n6. Atomicity risks in batch operations","status":"closed","priority":2,"issue_type":"epic","created_at":"2025-12-16T18:18:58.115507-08:00","updated_at":"2025-12-30T18:12:30.962234-08:00","closed_at":"2025-12-30T16:59:51.322347-08:00","close_reason":"All technical debt cleanup tasks completed: path utilities consolidated, large files split, error handling standardized, dead test code removed, global state reduced, ignored errors documented","dependencies":[{"issue_id":"bd-tggf","depends_on_id":"bd-9g1z","type":"blocks","created_at":"2025-12-22T21:00:21.571116-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-qioh","type":"blocks","created_at":"2025-12-22T21:00:21.640589-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-rgyd","type":"blocks","created_at":"2025-12-22T21:00:21.710912-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-dhza","type":"blocks","created_at":"2025-12-22T21:00:21.852-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-ork0","type":"blocks","created_at":"2025-12-22T21:00:21.930168-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-4nqq","type":"blocks","created_at":"2025-12-22T21:00:21.781914-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-74w1","type":"blocks","created_at":"2025-12-22T21:00:21.429274-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-05a8","type":"blocks","created_at":"2025-12-22T21:00:21.501589-08:00","created_by":"daemon"}]} +{"id":"bd-tggf","title":"Code Health Review Dec 2025: Technical Debt Cleanup","description":"Epic grouping technical debt identified in the Dec 16, 2025 code health review.\n\n## Overall Health Grade: B (Solid foundation, needs cleanup)\n\n### P1 (High Priority):\n- bd-74w1: Consolidate duplicate path-finding utilities\n- [deleted:bd-b6xo]: Remove/fix ClearDirtyIssues() race condition\n- [deleted:bd-b3og]: Fix TestImportBugIntegration deadlock\n\n### P2 (Medium Priority):\n- bd-05a8: Split large files (doctor.go, sync.go)\n- bd-qioh: Standardize error handling patterns\n- bd-rgyd: Split queries.go (1586 lines)\n- bd-9g1z: Fix/remove TestFindJSONLPathDefault\n\n### P3 (Low Priority):\n- bd-ork0: Add comments to 30+ ignored errors\n- bd-4nqq: Remove dead test code in info_test.go\n- bd-dhza: Reduce global state in main.go\n\n## Key Areas:\n1. Code duplication in path utilities\n2. Large monolithic files (5 files \u003e1000 lines)\n3. Global state (25+ variables, 3 deprecated)\n4. Silent error suppression (30+ instances)\n5. Test gaps and dead test code\n6. Atomicity risks in batch operations","status":"closed","priority":2,"issue_type":"epic","created_at":"2025-12-16T18:18:58.115507-08:00","updated_at":"2025-12-30T18:12:30.962234-08:00","closed_at":"2025-12-30T16:59:51.322347-08:00","close_reason":"All technical debt cleanup tasks completed: path utilities consolidated, large files split, error handling standardized, dead test code removed, global state reduced, ignored errors documented","dependencies":[{"issue_id":"bd-tggf","depends_on_id":"bd-qioh","type":"blocks","created_at":"2025-12-22T21:00:21.640589-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-rgyd","type":"blocks","created_at":"2025-12-22T21:00:21.710912-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-dhza","type":"blocks","created_at":"2025-12-22T21:00:21.852-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-74w1","type":"blocks","created_at":"2025-12-22T21:00:21.429274-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-4nqq","type":"blocks","created_at":"2025-12-22T21:00:21.781914-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-ork0","type":"blocks","created_at":"2025-12-22T21:00:21.930168-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-05a8","type":"blocks","created_at":"2025-12-22T21:00:21.501589-08:00","created_by":"daemon"},{"issue_id":"bd-tggf","depends_on_id":"bd-9g1z","type":"blocks","created_at":"2025-12-22T21:00:21.571116-08:00","created_by":"daemon"}]} {"id":"bd-tglv","title":"Merge: onyx-1767142014545","description":"branch: polecat/onyx-1767142014545\ntarget: main\nsource_issue: onyx-1767142014545\nrig: beads","status":"closed","priority":2,"issue_type":"merge-request","created_at":"2025-12-30T17:05:30.189116-08:00","updated_at":"2025-12-30T18:12:30.983654-08:00","closed_at":"2025-12-30T18:11:07.809452-08:00","created_by":"beads/polecats/onyx"} {"id":"bd-thgk","title":"Improve test coverage for internal/compact (18.2% → 70%)","description":"Improve test coverage for internal/compact package from 17% to 70%.\n\n## Current State\n- Coverage: 17.3%\n- Files: compactor.go, git.go, haiku.go\n- Tests: compactor_test.go (minimal tests)\n\n## Functions Needing Tests\n\n### compactor.go (core compaction)\n- [ ] New - needs config validation tests\n- [ ] CompactTier1 - needs single issue compaction tests\n- [ ] CompactTier1Batch - needs batch processing tests\n- [ ] compactSingleWithResult - internal, test via public API\n\n### git.go\n- [ ] GetCurrentCommitHash - needs git repo fixture tests\n\n### haiku.go (AI summarization) - MOCK REQUIRED\n- [ ] NewHaikuClient - needs API key validation tests\n- [ ] SummarizeTier1 - needs mock API response tests\n- [ ] callWithRetry - needs retry logic tests\n- [ ] isRetryable - needs error classification tests\n- [ ] renderTier1Prompt - needs template rendering tests\n\n## Implementation Guide\n\n1. **Mock the Anthropic API:**\n ```go\n // Create mock HTTP server\n server := httptest.NewServer(http.HandlerFunc(func(w http.ResponseWriter, r *http.Request) {\n json.NewEncoder(w).Encode(map[string]interface{}{\n \"content\": []map[string]string{{\"text\": \"Summarized content\"}},\n })\n }))\n defer server.Close()\n \n // Point client at mock\n client.baseURL = server.URL\n ```\n\n2. **Test scenarios:**\n - Successful compaction with AI summary\n - API failure with retry\n - Rate limit handling\n - Empty issue handling\n - Large issue truncation\n\n3. **Use test database:**\n ```go\n store, cleanup := testutil.NewTestStore(t)\n defer cleanup()\n ```\n\n## Success Criteria\n- Coverage ≥ 70%\n- AI calls properly mocked (no real API calls in tests)\n- Retry logic verified\n- Error paths covered\n\n## Run Tests\n```bash\ngo test -v -cover ./internal/compact\ngo test -race ./internal/compact\n```","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-13T20:42:58.455767-08:00","updated_at":"2025-12-23T13:41:10.80832-08:00","closed_at":"2025-12-23T13:41:10.80832-08:00","dependencies":[{"issue_id":"bd-thgk","depends_on_id":"bd-iz5t","type":"parent-child","created_at":"2025-12-23T12:44:07.287377-08:00","created_by":"daemon"}]} {"id":"bd-ti1m","title":"Test hooked styling","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-28T22:33:47.135871-08:00","updated_at":"2025-12-28T22:34:26.00871-08:00","closed_at":"2025-12-28T22:34:26.00871-08:00","created_by":"beads/crew/emma"} -{"id":"bd-tj00","title":"Update local installation","description":"go build -o ~/.local/bin/bd ./cmd/bd \u0026\u0026 codesign -s - ~/.local/bin/bd","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:20.616907-08:00","updated_at":"2025-12-20T21:55:42.756171-08:00","closed_at":"2025-12-20T21:55:42.756171-08:00","dependencies":[{"issue_id":"bd-tj00","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:20.619834-08:00","created_by":"daemon"},{"issue_id":"bd-tj00","depends_on_id":"bd-9l0h","type":"blocks","created_at":"2025-12-20T21:53:29.817989-08:00","created_by":"daemon"}]} +{"id":"bd-tj00","title":"Update local installation","description":"go build -o ~/.local/bin/bd ./cmd/bd \u0026\u0026 codesign -s - ~/.local/bin/bd","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-20T21:53:20.616907-08:00","updated_at":"2025-12-20T21:55:42.756171-08:00","closed_at":"2025-12-20T21:55:42.756171-08:00","dependencies":[{"issue_id":"bd-tj00","depends_on_id":"bd-9l0h","type":"blocks","created_at":"2025-12-20T21:53:29.817989-08:00","created_by":"daemon"},{"issue_id":"bd-tj00","depends_on_id":"bd-an4s","type":"parent-child","created_at":"2025-12-20T21:53:20.619834-08:00","created_by":"daemon"}]} {"id":"bd-tksk","title":"Support session_id field on issue close/update mutations","description":"## Context\n\nPer Gas Town decision 009-session-events-architecture.md, work attribution for\nentity CV building requires capturing which Claude Code session performed work.\n\n## Implementation\n\nAdd session_id support to issue mutations:\n\n### Schema\nAdd optional field to issue close:\n- closed_by_session: string (Claude Code session UUID)\n\n### CLI\n```bash\nbd close gt-abc --session \"abc123-session-id\"\n# Or via env var:\nCLAUDE_SESSION_ID=abc123 bd close gt-abc\n```\n\n### Storage\nStore in issues.jsonl:\n```json\n{\"id\": \"gt-abc\", \"status\": \"closed\", \"closed_by_session\": \"abc123\", ...}\n```\n\n## Acceptance Criteria\n\n- [ ] bd close accepts --session flag or reads CLAUDE_SESSION_ID env\n- [ ] session_id stored in issue close record\n- [ ] bd show displays closed_by_session if present\n- [ ] Works for bd update --status=closed as well\n\n## Future\n\n- Query by session: bd list --closed-by-session=X\n- Entity chain: aggregate session activity for CV\n\n## Related\n\n- Gas Town docs/hop/decisions/009-session-events-architecture.md\n- gt-nvz8b: gt done captures session_id","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-31T12:49:58.379182-08:00","updated_at":"2025-12-31T13:13:17.590098-08:00","closed_at":"2025-12-31T13:13:17.590098-08:00","close_reason":"Implemented session_id tracking for issue close/update mutations","created_by":"gastown/crew/joe"} {"id":"bd-tm2p","title":"Polecats get stuck on interactive shell prompts (cp/mv/rm -i)","description":"During swarm operations, polecats frequently get stuck waiting for interactive prompts from shell commands like:\n- cp prompting 'overwrite file? (y/n)'\n- mv prompting 'overwrite file? (y/n)' \n- rm prompting 'remove file?'\n\nThis happens because macOS aliases or shell configs may have -i flags set by default.\n\nRoot cause: Claude Code runs commands that trigger interactive confirmation prompts, but cannot respond to them, causing the agent to hang indefinitely.\n\nObserved in: Multiple polecats during GH issues swarm (Dec 2024)\n- Derrick, Roustabout, Prospector, Warboy all got stuck on y/n prompts\n\nSuggested fixes:\n1. AGENTS.md should instruct agents to always use -f flag with cp/mv/rm\n2. Polecat startup could set shell aliases to use non-interactive versions\n3. bd prime hook could include guidance about non-interactive commands\n4. Consider detecting stuck prompts and auto-recovering","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-14T16:51:24.572271-08:00","updated_at":"2025-12-25T01:21:01.952723-08:00","deleted_at":"2025-12-25T01:21:01.952723-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-to1u","title":"Run bump-version.sh test-squash","description":"Run ./scripts/bump-version.sh test-squash to update version in all files","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-21T13:52:33.06696-08:00","updated_at":"2025-12-21T13:53:41.841677-08:00","deleted_at":"2025-12-21T13:53:41.841677-08:00","deleted_by":"stevey","delete_reason":"manual delete","original_type":"task"} @@ -997,7 +997,7 @@ {"id":"bd-yck","title":"Fix checkExistingBeadsData to be worktree-aware","description":"The checkExistingBeadsData function in cmd/bd/init.go checks for .beads in the current working directory, but for worktrees it should check the main repository root instead. This prevents proper worktree compatibility.","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-07T16:48:32.082776345-07:00","updated_at":"2025-12-23T22:33:32.412338-08:00","closed_at":"2025-12-23T22:33:32.412338-08:00"} {"id":"bd-ycrq","title":"Consolidate daemon/daemons commands","description":"Merge daemons functionality into daemon command with subcommands. Currently have both 'daemon' and 'daemons' at top level.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-28T12:59:11.393637-08:00","updated_at":"2025-12-28T13:05:28.776344-08:00","closed_at":"2025-12-28T13:05:28.776344-08:00","created_by":"stevey"} {"id":"bd-ykd9","title":"Add bd doctor --fix flag to automatically repair issues","description":"Add bd doctor --fix flag to automatically repair detected issues.\n\n## Current State\n- Doctor checks return issues with \"Fix\" field containing fix instructions\n- No automatic fix execution\n- User must manually follow fix instructions\n\n## Implementation\n\n### 1. Add --fix flag to doctor.go\n```go\n// In cmd/bd/doctor.go init()\ndoctorCmd.Flags().Bool(\"fix\", false, \"Automatically fix detected issues\")\ndoctorCmd.Flags().Bool(\"yes\", false, \"Skip confirmation prompts (use with --fix)\")\n```\n\n### 2. Create fix registry (cmd/bd/doctor/fix/registry.go)\n```go\npackage fix\n\n// Fixer can automatically repair an issue\ntype Fixer interface {\n // CanFix returns true if this fixer handles the given check name\n CanFix(checkName string) bool\n // Fix attempts to repair the issue, returns error if failed\n Fix(ctx context.Context, issue *CheckResult) error\n // Description returns human-readable description of what will be fixed\n Description() string\n}\n\nvar registry []Fixer\n\nfunc Register(f Fixer) {\n registry = append(registry, f)\n}\n\nfunc GetFixer(checkName string) Fixer {\n for _, f := range registry {\n if f.CanFix(checkName) {\n return f\n }\n }\n return nil\n}\n```\n\n### 3. Implement fixers (one per file)\n\n**cmd/bd/doctor/fix/hooks.go**\n```go\ntype HooksFixer struct{}\n\nfunc (f *HooksFixer) CanFix(name string) bool {\n return name == \"git-hooks\" || name == \"hooks-outdated\"\n}\n\nfunc (f *HooksFixer) Fix(ctx context.Context, issue *CheckResult) error {\n return hooks.Install(\".\", true) // force reinstall\n}\n\nfunc (f *HooksFixer) Description() string {\n return \"Reinstall git hooks\"\n}\n\nfunc init() {\n Register(\u0026HooksFixer{})\n}\n```\n\n**cmd/bd/doctor/fix/sync_branch.go**\n```go\ntype SyncBranchFixer struct{}\n\nfunc (f *SyncBranchFixer) CanFix(name string) bool {\n return name == \"sync-branch-missing\" || name == \"sync-branch-diverged\"\n}\n\nfunc (f *SyncBranchFixer) Fix(ctx context.Context, issue *CheckResult) error {\n // Reset to remote or create branch\n return syncbranch.ResetToRemote(ctx, repoRoot, branch, jsonlPath)\n}\n```\n\n**cmd/bd/doctor/fix/merge_driver.go**\n```go\ntype MergeDriverFixer struct{}\n\nfunc (f *MergeDriverFixer) CanFix(name string) bool {\n return name == \"merge-driver-missing\" || name == \"merge-driver-outdated\"\n}\n\nfunc (f *MergeDriverFixer) Fix(ctx context.Context, issue *CheckResult) error {\n return setupMergeDriver()\n}\n```\n\n### 4. Update doctor run logic\n\n```go\nfunc runDoctor(cmd *cobra.Command, args []string) {\n issues := runAllChecks()\n \n if \\!fixFlag {\n // Existing behavior - just display issues\n displayIssues(issues)\n return\n }\n \n // Collect fixable issues\n var fixable []FixableIssue\n for _, issue := range issues {\n if fixer := fix.GetFixer(issue.CheckName); fixer \\!= nil {\n fixable = append(fixable, FixableIssue{issue, fixer})\n }\n }\n \n if len(fixable) == 0 {\n fmt.Println(\"No automatically fixable issues found\")\n return\n }\n \n // Show what will be fixed\n fmt.Printf(\"Found %d fixable issues:\\n\", len(fixable))\n for i, f := range fixable {\n fmt.Printf(\" %d. [%s] %s\\n\", i+1, f.Issue.CheckName, f.Fixer.Description())\n }\n \n // Confirm unless --yes\n if \\!yesFlag {\n fmt.Print(\"\\nProceed with fixes? [Y/n] \")\n // ... read confirmation\n }\n \n // Apply fixes\n for _, f := range fixable {\n fmt.Printf(\"Fixing %s... \", f.Issue.CheckName)\n if err := f.Fixer.Fix(ctx, f.Issue); err \\!= nil {\n fmt.Printf(\"FAILED: %v\\n\", err)\n } else {\n fmt.Println(\"OK\")\n }\n }\n}\n```\n\n## Fixable Checks (Initial Set)\n\n| Check | Fixer | Action |\n|-------|-------|--------|\n| git-hooks | HooksFixer | Reinstall hooks |\n| hooks-outdated | HooksFixer | Update hooks |\n| merge-driver-missing | MergeDriverFixer | Configure merge driver |\n| sync-branch-diverged | SyncBranchFixer | Reset to remote |\n| daemon-version-mismatch | DaemonFixer | Restart daemon |\n\n## Testing\n```bash\n# Test with broken hooks\nrm .git/hooks/pre-commit\nbd doctor --fix --yes\n\n# Verify fix applied\nbd doctor # Should pass now\n```\n\n## Success Criteria\n- --fix flag triggers automatic repair\n- User prompted for confirmation (unless --yes)\n- Clear output showing what was fixed\n- Graceful handling of fix failures\n- At least 5 common issues auto-fixable","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-11-14T18:17:48.411264-08:00","updated_at":"2025-12-23T13:34:05.646445-08:00","closed_at":"2025-12-23T13:34:05.646445-08:00","dependencies":[{"issue_id":"bd-ykd9","depends_on_id":"bd-iz5t","type":"parent-child","created_at":"2025-12-23T12:44:07.732505-08:00","created_by":"daemon"}]} -{"id":"bd-ykqu","title":"Add gate timeout tracking and notification","description":"Implement timeout and notification logic for gates.\n\n## Timeout Behavior\n1. Gate created with timeout (e.g., 30m)\n2. Deacon tracks elapsed time during patrol\n3. If timeout reached:\n - Notify all waiters: \"Gate timed out\"\n - Close gate with timeout reason\n - Waiter can retry, escalate, or fail gracefully\n\n## Notification\n- Use gt mail send to notify waiters\n- Include gate ID, await type, and reason in message\n- Support multiple waiters notification\n\n## Escalation Path\n- Witness sees stuck worker, nudges them\n- Worker can escalate to human if needed","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T11:44:40.1825-08:00","updated_at":"2025-12-23T12:19:44.362527-08:00","closed_at":"2025-12-23T12:19:44.362527-08:00","dependencies":[{"issue_id":"bd-ykqu","depends_on_id":"bd-udsi","type":"parent-child","created_at":"2025-12-23T11:44:53.072862-08:00","created_by":"daemon"},{"issue_id":"bd-ykqu","depends_on_id":"bd-is6m","type":"blocks","created_at":"2025-12-23T11:44:56.595085-08:00","created_by":"daemon"}]} +{"id":"bd-ykqu","title":"Add gate timeout tracking and notification","description":"Implement timeout and notification logic for gates.\n\n## Timeout Behavior\n1. Gate created with timeout (e.g., 30m)\n2. Deacon tracks elapsed time during patrol\n3. If timeout reached:\n - Notify all waiters: \"Gate timed out\"\n - Close gate with timeout reason\n - Waiter can retry, escalate, or fail gracefully\n\n## Notification\n- Use gt mail send to notify waiters\n- Include gate ID, await type, and reason in message\n- Support multiple waiters notification\n\n## Escalation Path\n- Witness sees stuck worker, nudges them\n- Worker can escalate to human if needed","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T11:44:40.1825-08:00","updated_at":"2025-12-23T12:19:44.362527-08:00","closed_at":"2025-12-23T12:19:44.362527-08:00","dependencies":[{"issue_id":"bd-ykqu","depends_on_id":"bd-is6m","type":"blocks","created_at":"2025-12-23T11:44:56.595085-08:00","created_by":"daemon"},{"issue_id":"bd-ykqu","depends_on_id":"bd-udsi","type":"parent-child","created_at":"2025-12-23T11:44:53.072862-08:00","created_by":"daemon"}]} {"id":"bd-ymqn","title":"Code review: bd mol bond --ref and bd activity (bd-xo1o work)","description":"Review dave's recent commits for bd-xo1o (Dynamic Molecule Bonding):\n\n## Commits to Review\n- ee04b1ea: feat: add dynamic molecule bonding with --ref flag (bd-xo1o.1)\n- be520d90: feat: add bd activity command for real-time state feed (bd-xo1o.3)\n\n## Review Focus\n1. Code quality and correctness\n2. Error handling\n3. Edge cases\n4. Test coverage\n5. Documentation\n\n## Deliverables\n- File beads for any issues found\n- Note any concerns or suggestions\n- Verify the implementation matches the bd-xo1o epic requirements","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-23T03:47:55.217363-08:00","updated_at":"2025-12-23T04:11:00.226326-08:00","closed_at":"2025-12-23T04:11:00.226326-08:00"} {"id":"bd-ypvj","title":"Fix sync.remote config not being respected (GH#872)","description":"bd config set sync.remote \u003cname\u003e sets the value but bd sync still tries to use 'origin'. Need to check where the sync code reads the remote name and ensure it uses the configured value.","status":"closed","priority":1,"issue_type":"bug","created_at":"2026-01-03T13:12:50.777534-08:00","updated_at":"2026-01-03T13:24:46.723563-08:00","closed_at":"2026-01-03T13:24:46.723563-08:00","close_reason":"Fixed: gitPull/gitPush now respect sync.remote config (GH#872)","created_by":"beads/crew/grip"} {"id":"bd-yqhh","title":"bd list --parent: filter by parent issue","description":"Add --parent flag to bd list to filter issues by parent.\n\nExample:\n```bash\nbd list --parent=gt-h5n --status=open\n```\n\nWould show all open children of gt-h5n.\n\nUseful for:\n- Checking epic progress\n- Finding swarmable work within an epic\n- Molecule step listing","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-23T01:51:26.830952-08:00","updated_at":"2025-12-23T02:10:12.909803-08:00","closed_at":"2025-12-23T02:10:12.909803-08:00"} @@ -1007,16 +1007,16 @@ {"id":"bd-yyxi","title":"Digest: beads-release","description":"Successfully released beads v0.42.0 - GitHub, npm, PyPI all verified","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-30T21:28:02.188707-08:00","updated_at":"2025-12-30T21:28:02.188707-08:00","closed_at":"2025-12-30T21:28:02.18865-08:00","close_reason":"Squashed from 18 wisps","dependencies":[{"issue_id":"bd-yyxi","depends_on_id":"bd-eph-5h2","type":"parent-child","created_at":"2025-12-30T21:28:02.189419-08:00","created_by":"beads/crew/emma"}]} {"id":"bd-z3rf","title":"dave Handoff","status":"tombstone","priority":2,"issue_type":"task","created_at":"2025-12-23T04:33:42.874554-08:00","updated_at":"2025-12-29T12:41:09.335754-08:00","deleted_at":"2025-12-29T12:41:09.335754-08:00","deleted_by":"daemon","delete_reason":"orphaned handoff stubs from crash","original_type":"task"} {"id":"bd-z4f5","title":"--parent flag reports success but doesn't persist to JSONL","description":"The --parent flag for bd update reports success but the change doesn't persist.\n\nReported by: Mayor\nLocation: show.go:810-814 handles the logic\n\nSymptoms:\n- bd update \u003cid\u003e --parent=\u003cnew-parent\u003e returns success\n- But the parent change is not written to JSONL\n- Subsequent bd show reveals parent unchanged\n\nThis shipped in v0.39.1 as part of bd-cj2e (--parent flag for reparenting).\n\nInvestigation: Check the update path from show.go through to JSONL export. The RPC/daemon layer may be dropping the parent field, or the storage layer isn't persisting it.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-12-27T23:10:22.428136-08:00","updated_at":"2025-12-27T23:27:45.716572-08:00","closed_at":"2025-12-27T23:27:45.716572-08:00","created_by":"beads/crew/emma"} -{"id":"bd-z6kw","title":"Refinery gh:run gate auto-discovery","description":"Refinery auto-populates await_id for gh:run gates from recent workflow runs.\n\n## Problem\nGate created by cook has await_type=gh:run but no await_id.\nNeed to discover the run ID from the push that triggered CI.\n\n## Solution\nDuring Refinery patrol:\n1. Find open gh:run gates without await_id\n2. Query: gh run list --workflow=\u003cgate.workflow\u003e --limit=5\n3. Match run to gate (by branch, commit, or time proximity)\n4. Update gate: bd update \u003cgate-id\u003e --await-id=\u003crun-id\u003e\n5. Now bd gate check --type=gh can poll that specific run\n\n## Implementation\n- Add discover-await-ids step to mol-refinery-patrol\n- Use gh CLI to query recent runs\n- Match heuristics: same branch, recent commit, within 5 mins\n- Update gate with discovered run ID\n\n## Acceptance Criteria\n- [ ] Refinery discovers run IDs for gh:run gates\n- [ ] Gates updated with correct await_id\n- [ ] Subsequent polls use run ID\n- [ ] Handles multiple pending gates","status":"closed","priority":2,"issue_type":"task","created_at":"2026-01-02T13:27:42.35667-08:00","updated_at":"2026-01-04T15:22:07.771701-08:00","closed_at":"2026-01-02T16:12:24.656236-08:00","close_reason":"Implemented bd gate discover command for auto-discovery of gh:run gate await_ids","created_by":"mayor","dependencies":[{"issue_id":"bd-z6kw","depends_on_id":"bd-d1n1","type":"parent-child","created_at":"2026-01-02T13:28:18.621422-08:00","created_by":"mayor"},{"issue_id":"bd-z6kw","depends_on_id":"bd-4k3c","type":"blocks","created_at":"2026-01-02T13:28:18.688305-08:00","created_by":"mayor"}]} +{"id":"bd-z6kw","title":"Refinery gh:run gate auto-discovery","description":"Refinery auto-populates await_id for gh:run gates from recent workflow runs.\n\n## Problem\nGate created by cook has await_type=gh:run but no await_id.\nNeed to discover the run ID from the push that triggered CI.\n\n## Solution\nDuring Refinery patrol:\n1. Find open gh:run gates without await_id\n2. Query: gh run list --workflow=\u003cgate.workflow\u003e --limit=5\n3. Match run to gate (by branch, commit, or time proximity)\n4. Update gate: bd update \u003cgate-id\u003e --await-id=\u003crun-id\u003e\n5. Now bd gate check --type=gh can poll that specific run\n\n## Implementation\n- Add discover-await-ids step to mol-refinery-patrol\n- Use gh CLI to query recent runs\n- Match heuristics: same branch, recent commit, within 5 mins\n- Update gate with discovered run ID\n\n## Acceptance Criteria\n- [ ] Refinery discovers run IDs for gh:run gates\n- [ ] Gates updated with correct await_id\n- [ ] Subsequent polls use run ID\n- [ ] Handles multiple pending gates","status":"closed","priority":2,"issue_type":"task","created_at":"2026-01-02T13:27:42.35667-08:00","updated_at":"2026-01-04T15:22:07.771701-08:00","closed_at":"2026-01-02T16:12:24.656236-08:00","close_reason":"Implemented bd gate discover command for auto-discovery of gh:run gate await_ids","created_by":"mayor","dependencies":[{"issue_id":"bd-z6kw","depends_on_id":"bd-4k3c","type":"blocks","created_at":"2026-01-02T13:28:18.688305-08:00","created_by":"mayor"},{"issue_id":"bd-z6kw","depends_on_id":"bd-d1n1","type":"parent-child","created_at":"2026-01-02T13:28:18.621422-08:00","created_by":"mayor"}]} {"id":"bd-z830","title":"Test child task","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-27T23:26:58.246573-08:00","updated_at":"2025-12-27T23:27:40.451603-08:00","closed_at":"2025-12-27T23:27:40.451603-08:00","created_by":"beads/crew/emma","dependencies":[{"issue_id":"bd-z830","depends_on_id":"bd-fbl9","type":"parent-child","created_at":"2025-12-27T23:27:02.984294-08:00","created_by":"daemon"}]} {"id":"bd-z86n","title":"Code Review: PR #551 - Persist close_reason to issues table","description":"Code review of PR #551 which fixes close_reason persistence bug.\n\n## Summary\nThe PR correctly fixes a bug where close_reason was only stored in the events table, not in the issues.close_reason column. This caused `bd show --json` to return empty close_reason.\n\n## What Was Fixed\n- ✅ CloseIssue now updates both close_reason and closed_at\n- ✅ ReOpenIssue clears both close_reason and closed_at\n- ✅ Comprehensive tests added for both storage and CLI layers\n- ✅ Clear documentation in queries.go about dual storage strategy\n\n## Quality Assessment\n✅ Tests cover both storage layer and CLI JSON output\n✅ Handles reopen case (clearing close_reason)\n✅ Good comments explaining dual-storage design\n✅ No known issues\n\n## Potential Followups\nSee linked issues for suggestions.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-14T14:25:06.887069-08:00","updated_at":"2025-12-29T13:40:29.724656-08:00","closed_at":"2025-12-29T13:40:29.724656-08:00","close_reason":"Stale/spurious - test artifacts, merged PRs, or auto-close candidates"} {"id":"bd-z8a6","title":"bd delete --from-file should add deleted issues to deletions manifest","description":"When using bd delete --from-file to bulk delete issues, the deleted issue IDs are not being added to the deletions.jsonl manifest.\n\nThis causes those issues to be resurrected during bd sync when git history scanning finds them in old commits.\n\nExpected: All deleted issues should be added to deletions.jsonl so they wont be reimported from git history.\n\nWorkaround: Manually add deletion records to deletions.jsonl.","status":"tombstone","priority":1,"issue_type":"bug","created_at":"2025-12-16T01:48:14.099855-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} -{"id":"bd-zc3","title":"Add --pinned and --no-pinned flags to bd list","description":"Add filtering flags to bd list: --pinned shows only pinned issues, --no-pinned excludes pinned issues. Default behavior shows all issues with a pin indicator.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:29.518028-08:00","updated_at":"2025-12-21T11:30:01.484978-08:00","closed_at":"2025-12-21T11:30:01.484978-08:00","dependencies":[{"issue_id":"bd-zc3","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.256764-08:00","created_by":"daemon"},{"issue_id":"bd-zc3","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.486361-08:00","created_by":"daemon"}]} +{"id":"bd-zc3","title":"Add --pinned and --no-pinned flags to bd list","description":"Add filtering flags to bd list: --pinned shows only pinned issues, --no-pinned excludes pinned issues. Default behavior shows all issues with a pin indicator.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T23:33:29.518028-08:00","updated_at":"2025-12-21T11:30:01.484978-08:00","closed_at":"2025-12-21T11:30:01.484978-08:00","dependencies":[{"issue_id":"bd-zc3","depends_on_id":"bd-7h5","type":"blocks","created_at":"2025-12-18T23:34:07.486361-08:00","created_by":"daemon"},{"issue_id":"bd-zc3","depends_on_id":"bd-0vg","type":"blocks","created_at":"2025-12-18T23:33:56.256764-08:00","created_by":"daemon"}]} {"id":"bd-zf5w","title":"bd mail uses git user.name for sender instead of BEADS_AGENT_NAME","description":"When sending mail via `bd mail send`, the sender field in the stored issue uses git config user.name instead of the BEADS_AGENT_NAME environment variable.\n\nReproduction:\n1. Set BEADS_AGENT_NAME=gastown-alpha\n2. Run: bd mail send mayor/ -s 'Test' -m 'Body'\n3. Check the issue.jsonl: sender is 'Steve Yegge' (git user.name) not 'gastown-alpha'\n\nExpected: The sender field should use BEADS_AGENT_NAME when set.\n\nThis breaks the mail system for multi-agent workflows where agents need to identify themselves by their role (polecat, refinery, etc.) rather than the human user's git identity.\n\nRelated: gt mail routing integration with Gas Town","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-20T21:46:33.646746-08:00","updated_at":"2025-12-20T21:59:25.771325-08:00","closed_at":"2025-12-20T21:59:25.771325-08:00"} {"id":"bd-zgb9","title":"gt polecat done should auto-stop running session","description":"Currently 'gt polecat done' fails if session is running, requiring a separate 'gt session stop' first. This is unnecessary friction - done should just stop the session automatically since that's always what you want.","status":"closed","priority":3,"issue_type":"task","created_at":"2025-12-23T04:11:23.899653-08:00","updated_at":"2025-12-23T04:12:13.029479-08:00","closed_at":"2025-12-23T04:12:13.029479-08:00"} {"id":"bd-ziy5","title":"GH#409: bd init uses issues.jsonl but docs say beads.jsonl","description":"bd init creates config referencing issues.jsonl but README/docs reference beads.jsonl as canonical. Standardize naming. See GitHub issue #409.","status":"tombstone","priority":2,"issue_type":"bug","created_at":"2025-12-16T01:03:58.109954-08:00","updated_at":"2025-12-17T16:11:17.070763-08:00","deleted_at":"2025-12-17T16:11:17.070763-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"bug"} {"id":"bd-zlef","title":"bd repair command: fix orphaned foreign key refs","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-12-29T12:31:11.881702-08:00","updated_at":"2025-12-29T12:33:47.159658-08:00","closed_at":"2025-12-29T12:33:47.159658-08:00","created_by":"stevey"} -{"id":"bd-zmmy","title":"bd ready resolves external dependencies","description":"Extend bd ready to check external blocked_by references:\n\n1. Parse external:\u003cproject\u003e:\u003ccapability\u003e from blocked_by\n2. Look up project path from external_projects config\n3. Check if target project has provides:\u003ccapability\u003e label on a closed issue\n4. If not satisfied, issue is blocked\n\nExample output:\n```bash\nbd ready\n# gt-xyz: blocked by external:beads:mol-run-assignee (not provided)\n# gt-abc: ready\n```\n\nDepends on: bd-om4a (external: prefix), bd-66w1 (config)\n\nPart of cross-project dependency system.\nSee: gastown/docs/cross-project-deps.md","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-21T22:37:50.03794-08:00","updated_at":"2025-12-21T23:42:25.042402-08:00","closed_at":"2025-12-21T23:42:25.042402-08:00","dependencies":[{"issue_id":"bd-zmmy","depends_on_id":"bd-om4a","type":"blocks","created_at":"2025-12-21T22:38:38.106657-08:00","created_by":"daemon"},{"issue_id":"bd-zmmy","depends_on_id":"bd-66w1","type":"blocks","created_at":"2025-12-21T22:38:38.175633-08:00","created_by":"daemon"}]} +{"id":"bd-zmmy","title":"bd ready resolves external dependencies","description":"Extend bd ready to check external blocked_by references:\n\n1. Parse external:\u003cproject\u003e:\u003ccapability\u003e from blocked_by\n2. Look up project path from external_projects config\n3. Check if target project has provides:\u003ccapability\u003e label on a closed issue\n4. If not satisfied, issue is blocked\n\nExample output:\n```bash\nbd ready\n# gt-xyz: blocked by external:beads:mol-run-assignee (not provided)\n# gt-abc: ready\n```\n\nDepends on: bd-om4a (external: prefix), bd-66w1 (config)\n\nPart of cross-project dependency system.\nSee: gastown/docs/cross-project-deps.md","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-21T22:37:50.03794-08:00","updated_at":"2025-12-21T23:42:25.042402-08:00","closed_at":"2025-12-21T23:42:25.042402-08:00","dependencies":[{"issue_id":"bd-zmmy","depends_on_id":"bd-66w1","type":"blocks","created_at":"2025-12-21T22:38:38.175633-08:00","created_by":"daemon"},{"issue_id":"bd-zmmy","depends_on_id":"bd-om4a","type":"blocks","created_at":"2025-12-21T22:38:38.106657-08:00","created_by":"daemon"}]} {"id":"bd-zt59","title":"Deferred HOP schema additions (P2/P3)","description":"Deferred from bd-7pwh after review. Add when semantics are clearer and actually needed:\n\n- assignee_ref: Structured EntityRef alongside string assignee\n- work_type: 'mutex' vs 'open_competition' (everything is mutex in v0.1)\n- crystallizes: bool for work that compounds vs evaporates (can derive from issue_type)\n- cross_refs: URIs to beads in other repos (needs federation first)\n- skill_vector: []float32 embeddings placeholder (YAGNI)\n\nThese can be added later without breaking changes (all optional fields).","status":"open","priority":4,"issue_type":"task","created_at":"2025-12-22T17:54:20.02496-08:00","updated_at":"2026-01-02T00:17:14.358754-08:00"} {"id":"bd-zw72","title":"Investigate incremental blocked_issues_cache updates at scale","description":"Current blocked_issues_cache strategy does full DELETE + INSERT on every dependency/status change.\n\n**Problem at scale:**\n- 10K issues: ~50ms rebuild (acceptable)\n- 100K issues: ~500ms rebuild (noticeable)\n- 1M issues: multi-second rebuilds (problematic)\n\n**Current implementation (blocked_cache.go:104-154):**\n- DELETE FROM blocked_issues_cache\n- INSERT with recursive CTE\n\n**Potential optimizations:**\n1. **Incremental updates:** Only add/remove affected issue IDs instead of full rebuild\n2. **Dirty tracking:** Skip rebuild if cache is already valid\n3. **Async rebuild:** Rebuild in background, serve stale cache briefly\n4. **Partial invalidation:** Only invalidate affected subtree\n\n**Decision needed:** Is this premature optimization? Current target is \u003c100K issues.\n\n**Benchmark:** Add benchmark for cache rebuild at 100K scale to measure actual impact.","status":"open","priority":3,"issue_type":"task","created_at":"2025-12-22T22:58:55.165718-08:00","updated_at":"2026-01-02T00:17:14.280698-08:00","dependencies":[{"issue_id":"bd-zw72","depends_on_id":"bd-h0we","type":"discovered-from","created_at":"2025-12-22T22:58:55.166427-08:00","created_by":"daemon"}]} {"id":"bd-zwtq","title":"Run bd doctor at end of bd init to verify setup","description":"Run bd doctor diagnostics at end of bd init (after line 398 in init.go). If issues found, warn user immediately: '⚠ Setup incomplete. Run bd doctor --fix to complete setup.' Catches configuration problems before user encounters them in normal workflow.","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-11-21T23:16:09.596778-08:00","updated_at":"2025-12-23T04:20:51.887338-08:00","closed_at":"2025-12-23T04:20:51.887338-08:00","dependencies":[{"issue_id":"bd-zwtq","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:09.597617-08:00","created_by":"daemon"}]}