Merge pull request #805 from kraitsura/feature/bd-doctor-enhancements

feat: Enhance bd doctor with force repair and source selection

cmd/bd/doctor.go

@@ -48,6 +48,8 @@ var (
 	doctorOutput         string // export diagnostics to file
 	doctorFixChildParent bool   // opt-in fix for child→parent deps
 	doctorVerbose        bool   // show detailed output during fixes
+	doctorForce          bool   // force repair mode, bypass validation where safe
+	doctorSource         string // source of truth selection: auto, jsonl, db
 	perfMode             bool
 	checkHealthMode      bool
 	doctorCheckFlag      string // run specific check (e.g., "pollution")
@@ -117,6 +119,8 @@ Examples:
   bd doctor --fix --yes  # Automatically fix issues (no confirmation)
   bd doctor --fix -i     # Confirm each fix individually
   bd doctor --fix --fix-child-parent  # Also fix child→parent deps (opt-in)
+  bd doctor --fix --force # Force repair even when database can't be opened
+  bd doctor --fix --source=jsonl # Rebuild database from JSONL (source of truth)
   bd doctor --dry-run    # Preview what --fix would do without making changes
   bd doctor --perf       # Performance diagnostics
   bd doctor --output diagnostics.json  # Export diagnostics to file
@@ -219,6 +223,8 @@ func init() {
 	doctorCmd.Flags().BoolVar(&doctorDryRun, "dry-run", false, "Preview fixes without making changes")
 	doctorCmd.Flags().BoolVar(&doctorFixChildParent, "fix-child-parent", false, "Remove child→parent dependencies (opt-in)")
 	doctorCmd.Flags().BoolVarP(&doctorVerbose, "verbose", "v", false, "Show detailed output during fixes (e.g., list each removed dependency)")
+	doctorCmd.Flags().BoolVar(&doctorForce, "force", false, "Force repair mode: attempt recovery even when database cannot be opened")
+	doctorCmd.Flags().StringVar(&doctorSource, "source", "auto", "Choose source of truth for recovery: auto (detect), jsonl (prefer JSONL), db (prefer database)")
 }
 
 func runDiagnostics(path string) doctorResult {