bd sync: 2025-12-27 15:56:42

cmd/bd/doctor/jsonl_integrity.go

@@ -1,123 +0,0 @@
-package doctor
-
-import (
-	"bufio"
-	"encoding/json"
-	"fmt"
-	"os"
-	"path/filepath"
-	"strings"
-
-	"github.com/steveyegge/beads/internal/beads"
-	"github.com/steveyegge/beads/internal/configfile"
-	"github.com/steveyegge/beads/internal/utils"
-)
-
-func CheckJSONLIntegrity(path string) DoctorCheck {
-	beadsDir := filepath.Join(path, ".beads")
-
-	// Resolve JSONL path.
-	jsonlPath := ""
-	if cfg, err := configfile.Load(beadsDir); err == nil && cfg != nil {
-		if cfg.JSONLExport != "" && !isSystemJSONLFilename(cfg.JSONLExport) {
-			p := cfg.JSONLPath(beadsDir)
-			if _, err := os.Stat(p); err == nil {
-				jsonlPath = p
-			}
-		}
-	}
-	if jsonlPath == "" {
-		// Fall back to a best-effort discovery within .beads/.
-		p := utils.FindJSONLInDir(beadsDir)
-		if _, err := os.Stat(p); err == nil {
-			jsonlPath = p
-		}
-	}
-	if jsonlPath == "" {
-		return DoctorCheck{Name: "JSONL Integrity", Status: StatusOK, Message: "N/A (no JSONL file)"}
-	}
-
-	// Best-effort scan for malformed lines.
-	f, err := os.Open(jsonlPath) // #nosec G304 -- jsonlPath is within the workspace
-	if err != nil {
-		return DoctorCheck{
-			Name:    "JSONL Integrity",
-			Status:  StatusWarning,
-			Message: "Unable to read JSONL file",
-			Detail:  err.Error(),
-		}
-	}
-	defer f.Close()
-
-	var malformed int
-	var examples []string
-	scanner := bufio.NewScanner(f)
-	lineNo := 0
-	for scanner.Scan() {
-		lineNo++
-		line := strings.TrimSpace(scanner.Text())
-		if line == "" {
-			continue
-		}
-		var v struct {
-			ID string `json:"id"`
-		}
-		if err := json.Unmarshal([]byte(line), &v); err != nil || v.ID == "" {
-			malformed++
-			if len(examples) < 5 {
-				if err != nil {
-					examples = append(examples, fmt.Sprintf("line %d: %v", lineNo, err))
-				} else {
-					examples = append(examples, fmt.Sprintf("line %d: missing id", lineNo))
-				}
-			}
-		}
-	}
-	if err := scanner.Err(); err != nil {
-		return DoctorCheck{
-			Name:    "JSONL Integrity",
-			Status:  StatusWarning,
-			Message: "Unable to scan JSONL file",
-			Detail:  err.Error(),
-		}
-	}
-	if malformed == 0 {
-		return DoctorCheck{
-			Name:    "JSONL Integrity",
-			Status:  StatusOK,
-			Message: fmt.Sprintf("%s looks valid", filepath.Base(jsonlPath)),
-		}
-	}
-
-	// If we have a database, we can auto-repair by re-exporting from DB.
-	dbPath := filepath.Join(beadsDir, beads.CanonicalDatabaseName)
-	if cfg, err := configfile.Load(beadsDir); err == nil && cfg != nil && cfg.Database != "" {
-		dbPath = cfg.DatabasePath(beadsDir)
-	}
-	if _, err := os.Stat(dbPath); os.IsNotExist(err) {
-		return DoctorCheck{
-			Name:    "JSONL Integrity",
-			Status:  StatusError,
-			Message: fmt.Sprintf("%s has %d malformed line(s)", filepath.Base(jsonlPath), malformed),
-			Detail:  strings.Join(examples, "\n"),
-			Fix:     "Restore the JSONL file from git or from a backup (no database available for auto-repair).",
-		}
-	}
-
-	return DoctorCheck{
-		Name:    "JSONL Integrity",
-		Status:  StatusError,
-		Message: fmt.Sprintf("%s has %d malformed line(s)", filepath.Base(jsonlPath), malformed),
-		Detail:  strings.Join(examples, "\n"),
-		Fix:     "Run 'bd doctor --fix' to back up the JSONL and regenerate it from the database.",
-	}
-}
-
-func isSystemJSONLFilename(name string) bool {
-	switch name {
-	case "deletions.jsonl", "interactions.jsonl", "molecules.jsonl":
-		return true
-	default:
-		return false
-	}
-}