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bd sync: 2025-12-23 12:19:49

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Steve Yegge
2025-12-23 12:19:49 -08:00
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@@ -17,7 +17,7 @@
{"id":"bd-28db","title":"Add 'bd status' command for issue database overview","description":"Implement a bd status command that provides a quick snapshot of the issue database state, similar to how git status shows working tree state.\n\nExpected output: Show summary including counts by state (open, in-progress, blocked, closed), recent activity (last 7 days), and quick overview without needing multiple queries.\n\nExample output showing issue counts, recent activity stats, and pointer to bd list for details.\n\nProposed options: --all (show all issues), --assigned (show issues assigned to current user), --json (JSON format output)\n\nUse cases: Quick project health check, onboarding for new contributors, integration with shell prompts or CI/CD, daily standup reference","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-11-02T17:25:59.203549-08:00","updated_at":"2025-12-21T17:54:00.205191-08:00","closed_at":"2025-12-21T17:54:00.205191-08:00","close_reason":"Already implemented - bd status shows summary and activity"}
{"id":"bd-29fb","title":"Implement bd close --continue flag","description":"Auto-advance to next step in molecule when closing an issue. Referenced by gt-um6q, gt-lz13. Needed for molecule navigation workflow.","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-12-23T00:17:55.032875-08:00","updated_at":"2025-12-23T01:26:47.255313-08:00","closed_at":"2025-12-23T01:26:47.255313-08:00","close_reason":"Already implemented: --continue flag auto-advances to next step in molecule, --no-auto prevents auto-claiming"}
{"id":"bd-2ep8","title":"Update CHANGELOG.md with release notes","description":"Add meaningful release notes to CHANGELOG.md describing what changed in 0.30.7","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T22:56:48.649053-08:00","updated_at":"2025-12-19T22:57:31.69559-08:00","closed_at":"2025-12-19T22:57:31.69559-08:00","dependencies":[{"issue_id":"bd-2ep8","depends_on_id":"bd-8pyn","type":"parent-child","created_at":"2025-12-19T22:56:48.650816-08:00","created_by":"stevey"},{"issue_id":"bd-2ep8","depends_on_id":"bd-rupw","type":"blocks","created_at":"2025-12-19T22:56:48.651136-08:00","created_by":"stevey"}]}
{"id":"bd-2l03","title":"Implement await type handlers (gh:run, gh:pr, timer, human, mail)","description":"Implement condition checking for each await type.\n\n## Handlers Needed\n- gh:run:\u003cid\u003e - Check GitHub Actions run status via gh CLI\n- gh:pr:\u003cid\u003e - Check PR merged/closed status via gh CLI \n- timer:\u003cduration\u003e - Simple elapsed time check\n- human:\u003cprompt\u003e - Check for human approval (via mail?)\n- mail:\u003cpattern\u003e - Check for mail matching pattern\n\n## Implementation Location\nThis is Deacon logic, so likely in Gas Town (gt) not beads.\n\n## Interface\n```go\ntype AwaitHandler interface {\n Check(awaitID string) (completed bool, result string, err error)\n}\n```","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-23T11:44:38.492837-08:00","updated_at":"2025-12-23T11:44:38.492837-08:00","dependencies":[{"issue_id":"bd-2l03","depends_on_id":"bd-udsi","type":"parent-child","created_at":"2025-12-23T11:44:52.990746-08:00","created_by":"daemon"},{"issue_id":"bd-2l03","depends_on_id":"bd-is6m","type":"blocks","created_at":"2025-12-23T11:44:56.510792-08:00","created_by":"daemon"}]}
{"id":"bd-2l03","title":"Implement await type handlers (gh:run, gh:pr, timer, human, mail)","description":"Implement condition checking for each await type.\n\n## Handlers Needed\n- gh:run:\u003cid\u003e - Check GitHub Actions run status via gh CLI\n- gh:pr:\u003cid\u003e - Check PR merged/closed status via gh CLI \n- timer:\u003cduration\u003e - Simple elapsed time check\n- human:\u003cprompt\u003e - Check for human approval (via mail?)\n- mail:\u003cpattern\u003e - Check for mail matching pattern\n\n## Implementation Location\nThis is Deacon logic, so likely in Gas Town (gt) not beads.\n\n## Interface\n```go\ntype AwaitHandler interface {\n Check(awaitID string) (completed bool, result string, err error)\n}\n```","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T11:44:38.492837-08:00","updated_at":"2025-12-23T12:19:44.283318-08:00","closed_at":"2025-12-23T12:19:44.283318-08:00","close_reason":"Moved to gastown: gt-ng6g","dependencies":[{"issue_id":"bd-2l03","depends_on_id":"bd-udsi","type":"parent-child","created_at":"2025-12-23T11:44:52.990746-08:00","created_by":"daemon"},{"issue_id":"bd-2l03","depends_on_id":"bd-is6m","type":"blocks","created_at":"2025-12-23T11:44:56.510792-08:00","created_by":"daemon"}]}
{"id":"bd-2oo","title":"Edge Schema Consolidation: Unify all edges in dependencies table","description":"Consolidate all edge types into the dependency table per decision 004.\n\n## Changes\n- Add metadata column to dependencies table\n- Add thread_id column for conversation grouping\n- Remove redundant Issue fields: replies_to, relates_to, duplicate_of, superseded_by\n- Update all code to use dependencies API\n- Migration script for existing data\n- JSONL format change (breaking)\n\nReference: ~/gt/hop/decisions/004-edge-schema-consolidation.md","status":"closed","priority":0,"issue_type":"epic","created_at":"2025-12-18T02:01:48.785558-08:00","updated_at":"2025-12-18T02:49:10.61237-08:00","closed_at":"2025-12-18T02:49:10.61237-08:00","close_reason":"Phase 4 complete: all edge fields removed, dependencies API used exclusively"}
{"id":"bd-2oo.1","title":"Add metadata and thread_id columns to dependencies table","description":"Schema changes:\n- ALTER TABLE dependencies ADD COLUMN metadata TEXT DEFAULT '{}'\n- ALTER TABLE dependencies ADD COLUMN thread_id TEXT DEFAULT ''\n- CREATE INDEX idx_dependencies_thread ON dependencies(thread_id) WHERE thread_id != ''","status":"closed","priority":0,"issue_type":"task","created_at":"2025-12-18T02:02:00.468223-08:00","updated_at":"2025-12-18T02:49:10.575133-08:00","closed_at":"2025-12-18T02:49:10.575133-08:00","close_reason":"Phase 4 complete: all edge fields removed, dependencies API used exclusively","dependencies":[{"issue_id":"bd-2oo.1","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:00.470012-08:00","created_by":"daemon","metadata":"{}"}]}
{"id":"bd-2oo.2","title":"Remove redundant edge fields from Issue struct","description":"Remove from Issue struct:\n- RepliesTo -\u003e dependency with type replies-to\n- RelatesTo -\u003e dependencies with type relates-to \n- DuplicateOf -\u003e dependency with type duplicates\n- SupersededBy -\u003e dependency with type supersedes\n\nKeep: Sender, Ephemeral (these are attributes, not relationships)","status":"closed","priority":0,"issue_type":"task","created_at":"2025-12-18T02:02:00.891206-08:00","updated_at":"2025-12-18T02:49:10.584381-08:00","closed_at":"2025-12-18T02:49:10.584381-08:00","close_reason":"Phase 4 complete: all edge fields removed, dependencies API used exclusively","dependencies":[{"issue_id":"bd-2oo.2","depends_on_id":"bd-2oo","type":"parent-child","created_at":"2025-12-18T02:02:00.891655-08:00","created_by":"daemon","metadata":"{}"}]}
@@ -37,7 +37,7 @@
{"id":"bd-379","title":"Implement `bd setup cursor` for Cursor IDE integration","description":"Create a `bd setup cursor` command that integrates Beads workflow into Cursor IDE via .cursorrules file. Unlike Claude Code (which has hooks), Cursor uses a static rules file to provide context to its AI.","status":"open","priority":3,"issue_type":"feature","created_at":"2025-11-11T23:32:22.170083-08:00","updated_at":"2025-11-11T23:32:22.170083-08:00"}
{"id":"bd-3852","title":"Add orphan detection migration","description":"Create migration to detect orphaned children in existing databases. Query: SELECT id FROM issues WHERE id LIKE '%.%' AND substr(id, 1, instr(id || '.', '.') - 1) NOT IN (SELECT id FROM issues). Log results, let user decide action (delete orphans or convert to top-level).","status":"closed","priority":2,"issue_type":"task","created_at":"2025-11-04T12:32:30.727044-08:00","updated_at":"2025-12-21T21:00:05.041582-08:00","closed_at":"2025-12-21T21:00:05.041582-08:00","close_reason":"Already implemented in migration 016_orphan_detection.go - detects orphans and logs for user action"}
{"id":"bd-396j","title":"GetBlockedIssues shows external deps as blocking even when satisfied","description":"GetBlockedIssues (ready.go:385-493) shows external:* refs in the blocked_by list but doesn't check if they're actually satisfied using CheckExternalDep.\n\nThis can be confusing - an issue shows as blocked by external:project:capability even if that capability has been shipped (closed issue with provides: label exists).\n\nOptions:\n1. Call CheckExternalDep for each external ref and filter satisfied ones from blocked_by\n2. Add a note in output indicating external deps need lazy resolution\n3. Document this is expected behavior (bd blocked shows all deps, bd ready shows resolved state)\n\nRelated: GetReadyWork correctly filters by external deps, but GetBlockedIssues doesn't.","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-12-21T23:45:05.286304-08:00","updated_at":"2025-12-22T21:48:38.086451-08:00","closed_at":"2025-12-22T21:48:38.086451-08:00","close_reason":"Implemented filterBlockedByExternalDeps to check external deps satisfaction and filter them from BlockedBy lists","dependencies":[{"issue_id":"bd-396j","depends_on_id":"bd-zmmy","type":"discovered-from","created_at":"2025-12-21T23:45:05.286971-08:00","created_by":"daemon"}]}
{"id":"bd-3bsz","title":"gt mail send: support reading message body from stdin","description":"Currently gt mail send -m requires the message as a command-line argument, which causes shell escaping issues with backticks, quotes, and special characters.\n\nAdd support for reading message body from stdin:\n- gt mail send addr -s 'Subject' --stdin # Read body from stdin\n- echo 'body' | gt mail send addr -s 'Subject' -m - # Convention: -m - means stdin\n\nThis would allow:\ncat \u003c\u003c'EOF' | gt mail send addr -s 'Subject' --stdin\nMessage with `backticks` and 'quotes' safely\nEOF\n\nWithout this, agents struggle to send handoff messages containing code snippets.","status":"open","priority":2,"issue_type":"feature","created_at":"2025-12-23T03:21:39.496208-08:00","updated_at":"2025-12-23T03:21:39.496208-08:00"}
{"id":"bd-3bsz","title":"gt mail send: support reading message body from stdin","description":"Currently gt mail send -m requires the message as a command-line argument, which causes shell escaping issues with backticks, quotes, and special characters.\n\nAdd support for reading message body from stdin:\n- gt mail send addr -s 'Subject' --stdin # Read body from stdin\n- echo 'body' | gt mail send addr -s 'Subject' -m - # Convention: -m - means stdin\n\nThis would allow:\ncat \u003c\u003c'EOF' | gt mail send addr -s 'Subject' --stdin\nMessage with `backticks` and 'quotes' safely\nEOF\n\nWithout this, agents struggle to send handoff messages containing code snippets.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-23T03:21:39.496208-08:00","updated_at":"2025-12-23T12:19:44.443554-08:00","closed_at":"2025-12-23T12:19:44.443554-08:00","close_reason":"Moved to gastown: gt-rw2z"}
{"id":"bd-3ggb","title":"Rebuild local binary","description":"Build and verify: go build -o bd ./cmd/bd \u0026\u0026 ./bd version","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-18T22:43:03.101428-08:00","updated_at":"2025-12-18T22:46:40.955673-08:00","closed_at":"2025-12-18T22:46:40.955673-08:00","dependencies":[{"issue_id":"bd-3ggb","depends_on_id":"bd-qqc","type":"parent-child","created_at":"2025-12-18T22:43:16.748289-08:00","created_by":"daemon"},{"issue_id":"bd-3ggb","depends_on_id":"bd-4y4g","type":"blocks","created_at":"2025-12-18T22:43:20.950376-08:00","created_by":"daemon"}]}
{"id":"bd-3jcw","title":"activity.go: Missing test coverage","description":"The new activity.go command (from bd-xo1o.3) has no test coverage. At minimum, tests should cover:\n- parseDurationString() for various formats (5m, 1h, 2d, invalid)\n- filterEvents() for --mol and --type filtering\n- formatEvent() and getEventDisplay() for all mutation types\n\nDiscovered during code review of bd-xo1o implementation.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T04:06:15.563579-08:00","updated_at":"2025-12-23T04:14:56.150151-08:00","closed_at":"2025-12-23T04:14:56.150151-08:00","close_reason":"Added activity_test.go with tests for parseDurationString, filterEvents, getEventDisplay, and formatEvent covering all mutation types"}
{"id":"bd-3sz0","title":"Auto-repair stale merge driver configs with invalid placeholders","description":"Old bd versions (\u003c0.24.0) installed merge driver with invalid placeholders %L %R instead of %A %B. Add detection to bd doctor --fix: check if git config merge.beads.driver contains %L or %R, auto-repair to 'bd merge %A %O %A %B'. One-time migration for users who initialized with old versions.","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-21T23:16:10.762808-08:00","updated_at":"2025-11-21T23:16:28.892655-08:00","dependencies":[{"issue_id":"bd-3sz0","depends_on_id":"bd-tbz3","type":"parent-child","created_at":"2025-11-21T23:16:10.763612-08:00","created_by":"daemon","metadata":"{}"}]}
@@ -255,7 +255,7 @@
{"id":"bd-ipva","title":"Update go install bd to 0.33.2","description":"Rebuild and install bd to ~/go/bin:\n\n```bash\ngo install ./cmd/bd\n~/go/bin/bd version # Verify shows 0.33.2\n```\n\nNote: If ~/go/bin is in PATH before /opt/homebrew/bin, this is the version that runs by default.","status":"tombstone","priority":1,"issue_type":"task","created_at":"2025-12-21T16:10:13.760715-08:00","updated_at":"2025-12-21T17:29:31.791368-08:00","close_reason":"Local dev build used instead of go install","deleted_at":"2025-12-21T17:29:31.791368-08:00","deleted_by":"batch delete","delete_reason":"batch delete","original_type":"task","wisp":true}
{"id":"bd-iq19","title":"Distill: promote ad-hoc epic to proto","description":"Extract a reusable proto from an existing ad-hoc epic.\n\nCOMMAND: bd mol distill \u003cepic-id\u003e [--as \u003cproto-name\u003e]\n\nBEHAVIOR:\n- Clone the epic and all children as a new proto\n- Set is_template=true on all cloned issues\n- Replace concrete values with {{variable}} placeholders (interactive or --var flags)\n- Add to proto catalog\n\nFLAGS:\n- --as NAME: Custom proto ID (default: proto-\u003cepic-id\u003e)\n- --var field=placeholder: Replace value with variable placeholder\n- --interactive: Prompt for each field that looks parameterizable\n- --dry-run: Preview the proto structure\n\nEXAMPLE:\n bd mol distill bd-o5xe --as proto-feature-workflow \\\n --var title=feature_name \\\n --var assignee=worker\n\nUSE CASES:\n- Team develops good workflow organically, wants to reuse it\n- Capture tribal knowledge as executable templates\n- Create starting point for similar future work\n\nThe reverse of spawn: instead of proto → molecule, it's molecule → proto.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-21T01:05:07.953538-08:00","updated_at":"2025-12-21T10:31:56.814246-08:00","closed_at":"2025-12-21T10:31:56.814246-08:00","close_reason":"Implemented distill command in mol.go","dependencies":[{"issue_id":"bd-iq19","depends_on_id":"bd-o5xe","type":"parent-child","created_at":"2025-12-21T01:05:16.495774-08:00","created_by":"daemon"},{"issue_id":"bd-iq19","depends_on_id":"bd-rnnr","type":"blocks","created_at":"2025-12-21T01:05:16.560404-08:00","created_by":"daemon"}]}
{"id":"bd-iq7n","title":"Audit and fix JSONL filename mismatches across all repo clones","description":"## Problem\n\nMultiple clones of repos are configured with different JSONL filenames (issues.jsonl vs beads.jsonl), causing:\n1. JSONL files to be resurrected after deletion (one clone pushes issues.jsonl, another pushes beads.jsonl)\n2. Agents unable to see issues filed by other agents after sync\n3. Merge conflicts and data inconsistencies\n\n## Root Cause\n\nWhen repos were \"bd doctored\" or initialized at different times, some got issues.jsonl (old default) and others got beads.jsonl (Beads repo specific). These clones push their respective files, creating duplicates.\n\n## Task\n\nScan all repo clones under ~/src/ (1-2 levels deep) and standardize their JSONL configuration.\n\n### Step 1: Find all beads-enabled repos\n\n```bash\n# Find all directories named 'beads' at levels 1-2 under ~/src/\nfind ~/src -maxdepth 2 -type d -name beads\n```\n\n### Step 2: For each repo found, check configuration\n\nFor each directory from Step 1, check:\n- Does `.beads/metadata.json` exist?\n- What is the `jsonl_export` value?\n- What JSONL files actually exist in `.beads/`?\n- Are there multiple JSONL files (problem!)?\n\n### Step 3: Create audit report\n\nGenerate a report showing:\n```\nRepo Path | Config | Actual Files | Status\n----------------------------------- | ------------- | ---------------------- | --------\n~/src/beads | beads.jsonl | beads.jsonl | OK\n~/src/dave/beads | issues.jsonl | issues.jsonl | MISMATCH\n~/src/emma/beads | issues.jsonl | issues.jsonl, beads.jsonl | DUPLICATE!\n```\n\n### Step 4: Determine canonical name for each repo\n\nFor repos that are the SAME git repository (check `git remote -v`):\n- Group them together\n- Determine which JSONL filename should be canonical (majority wins, or beads.jsonl for the beads repo itself)\n- List which clones need to be updated\n\n### Step 5: Generate fix script\n\nCreate a script that for each mismatched clone:\n1. Updates `.beads/metadata.json` to use the canonical name\n2. If JSONL file needs renaming: `git mv .beads/old.jsonl .beads/new.jsonl`\n3. Removes any duplicate JSONL files: `git rm .beads/duplicate.jsonl`\n4. Commits the change\n5. Syncs: `bd sync`\n\n### Expected Output\n\n1. Audit report showing all repos and their config status\n2. List of repos grouped by git remote (same repository)\n3. Fix script or manual instructions for standardizing each repo\n4. Verification that after fixes, all clones of the same repo use the same JSONL filename\n\n### Edge Cases\n\n- Handle repos without metadata.json (use default discovery)\n- Handle repos with no git remote (standalone/local)\n- Handle repos that are not git repositories\n- Don't modify repos with uncommitted changes (warn instead)\n\n### Success Criteria\n\n- All clones of the same git repository use the same JSONL filename\n- No duplicate JSONL files in any repo\n- All configurations documented in metadata.json\n- bd doctor passes on all repos","status":"closed","priority":0,"issue_type":"task","created_at":"2025-11-21T23:58:35.044762-08:00","updated_at":"2025-12-17T23:13:40.531403-08:00","closed_at":"2025-12-17T16:50:59.510972-08:00"}
{"id":"bd-is6m","title":"Add gate checking to Deacon patrol loop","description":"Integrate gate checking into Deacon's patrol cycle.\n\n## Patrol Integration\n```go\nfunc (d *Deacon) checkGates(ctx context.Context) {\n gates, _ := d.store.ListOpenGates(ctx)\n \n for _, gate := range gates {\n // Check timeout\n if time.Since(gate.CreatedAt) \u003e gate.Timeout {\n d.notifyWaiters(gate, \"timeout\")\n d.closeGate(gate, \"timed out\")\n continue\n }\n \n // Check condition\n if d.checkCondition(gate.AwaitType, gate.AwaitID) {\n d.notifyWaiters(gate, \"cleared\")\n d.closeGate(gate, \"condition met\")\n }\n }\n}\n```\n\n## Note\nThis task is in Gas Town (gt), not beads. May need to be moved there.","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-23T11:44:36.839709-08:00","updated_at":"2025-12-23T11:44:36.839709-08:00","dependencies":[{"issue_id":"bd-is6m","depends_on_id":"bd-udsi","type":"parent-child","created_at":"2025-12-23T11:44:52.909253-08:00","created_by":"daemon"},{"issue_id":"bd-is6m","depends_on_id":"bd-u66e","type":"blocks","created_at":"2025-12-23T11:44:56.428084-08:00","created_by":"daemon"}]}
{"id":"bd-is6m","title":"Add gate checking to Deacon patrol loop","description":"Integrate gate checking into Deacon's patrol cycle.\n\n## Patrol Integration\n```go\nfunc (d *Deacon) checkGates(ctx context.Context) {\n gates, _ := d.store.ListOpenGates(ctx)\n \n for _, gate := range gates {\n // Check timeout\n if time.Since(gate.CreatedAt) \u003e gate.Timeout {\n d.notifyWaiters(gate, \"timeout\")\n d.closeGate(gate, \"timed out\")\n continue\n }\n \n // Check condition\n if d.checkCondition(gate.AwaitType, gate.AwaitID) {\n d.notifyWaiters(gate, \"cleared\")\n d.closeGate(gate, \"condition met\")\n }\n }\n}\n```\n\n## Note\nThis task is in Gas Town (gt), not beads. May need to be moved there.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T11:44:36.839709-08:00","updated_at":"2025-12-23T12:19:44.204647-08:00","closed_at":"2025-12-23T12:19:44.204647-08:00","close_reason":"Moved to gastown: gt-dh65","dependencies":[{"issue_id":"bd-is6m","depends_on_id":"bd-udsi","type":"parent-child","created_at":"2025-12-23T11:44:52.909253-08:00","created_by":"daemon"},{"issue_id":"bd-is6m","depends_on_id":"bd-u66e","type":"blocks","created_at":"2025-12-23T11:44:56.428084-08:00","created_by":"daemon"}]}
{"id":"bd-iw4z","title":"Compound visualization in bd mol show","description":"Enhance bd mol show to display compound structure.\n\nENHANCEMENTS:\n- Show constituent protos and how they're bonded\n- Display bond type (sequential/parallel) between components\n- Indicate attachment points\n- Show combined variable requirements across all protos\n\nEXAMPLE OUTPUT:\n\n Compound: proto-feature-with-tests\n Bonded from:\n └─ proto-feature (root)\n └─ proto-testing (sequential, after completion)\n \n Variables: {{name}}, {{version}}, {{test_suite}}\n \n Structure:\n proto-feature-with-tests\n ├─ Design feature {{name}}\n ├─ Implement core\n ├─ Write unit tests ← from proto-testing\n └─ Run test suite {{test_suite}} ← from proto-testing","status":"deferred","priority":2,"issue_type":"task","created_at":"2025-12-21T00:59:26.71318-08:00","updated_at":"2025-12-21T11:12:44.012871-08:00","dependencies":[{"issue_id":"bd-iw4z","depends_on_id":"bd-o5xe","type":"parent-child","created_at":"2025-12-21T00:59:51.500865-08:00","created_by":"daemon"},{"issue_id":"bd-iw4z","depends_on_id":"bd-rnnr","type":"blocks","created_at":"2025-12-21T00:59:51.891643-08:00","created_by":"daemon"}]}
{"id":"bd-j0tr","title":"Phase 1.3: Basic TOON read/write operations","description":"Add basic TOON read/write operations to bdt executable. Implement create, list, and show commands that use the internal/toon package for encoding/decoding to TOON format.\n\n## Subtasks\n1. Implement bdt create command - Create issues and serialize to TOON format\n2. Implement bdt list command - Read issues.toon and display all issues\n3. Implement bdt show command - Display single issue by ID\n4. Add file I/O operations for issues.toon\n5. Integrate internal/toon package (EncodeTOON, DecodeJSON)\n6. Write tests for create, list, show operations\n\n## Files to Create/Modify\n- cmd/bdt/create.go - Create command\n- cmd/bdt/list.go - List command \n- cmd/bdt/show.go - Show command\n- cmd/bdt/storage.go - File I/O helper\n\n## Success Criteria\n- bdt create \"Issue title\" creates and saves to issues.toon\n- bdt list displays all issues in human-readable format\n- bdt list --json shows JSON output\n- bdt show \u003cid\u003e displays single issue\n- Issues round-trip correctly: create → list → show\n- All tests passing with \u003e80% coverage","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T12:59:54.270296918-07:00","updated_at":"2025-12-19T13:09:00.196045685-07:00","closed_at":"2025-12-19T13:09:00.196045685-07:00"}
{"id":"bd-j3il","title":"Add bd reset command for clean slate restart","description":"Implement a command to reset beads to a clean starting state.\n\n**Context:** GitHub issue #479 - users sometimes get beads into an invalid state after updates, and there's no clean way to start fresh. The git backup/restore mechanism that protects against accidental deletion also makes it hard to intentionally reset.\n\n**Current workaround** (from maphew):\n```bash\nbd daemons killall\ngit rm .beads/*.jsonl\ngit commit -m 'remove old issues'\nrm .beads/*\nbd init\nbd onboard\n```\n\n**Desired:** A proper `bd reset` command that handles this cleanly and safely.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-13T08:41:34.956552+11:00","updated_at":"2025-12-13T08:43:49.970591+11:00","closed_at":"2025-12-13T08:43:49.970591+11:00"}
@@ -473,7 +473,7 @@
{"id":"bd-y8tn","title":"Test Molecule","description":"A test molecule","status":"closed","priority":2,"issue_type":"molecule","created_at":"2025-12-19T18:30:24.491279-08:00","updated_at":"2025-12-19T18:31:12.49898-08:00","closed_at":"2025-12-19T18:31:12.49898-08:00","close_reason":"test molecule - deleting"}
{"id":"bd-yck","title":"Fix checkExistingBeadsData to be worktree-aware","description":"The checkExistingBeadsData function in cmd/bd/init.go checks for .beads in the current working directory, but for worktrees it should check the main repository root instead. This prevents proper worktree compatibility.","status":"open","priority":2,"issue_type":"bug","created_at":"2025-12-07T16:48:32.082776345-07:00","updated_at":"2025-12-07T16:48:32.082776345-07:00"}
{"id":"bd-ykd9","title":"Add bd doctor --fix flag to automatically repair issues","description":"Implement a --fix flag for bd doctor that can automatically repair detected issues.\n\nRequirements:\n- Add --fix flag to bd doctor command\n- Show all fixable issues and prompt for confirmation before applying fixes\n- Organize fix implementations under doctor/fix/\u003ctype_of_fix\u003e.go\n- Each fix type should have its own file (e.g., doctor/fix/hooks.go, doctor/fix/sync.go)\n- Display what will be fixed and ask user to confirm (Y/n) before proceeding\n- Support fixing issues like:\n - Missing or broken git hooks\n - Sync problems with remote\n - File permission issues\n - Any other auto-repairable issues doctor detects\n\nImplementation notes:\n- Maintain separation between detection (existing doctor code) and repair (new fix code)\n- Each fix should be idempotent and safe to run multiple times\n- Provide clear output about what was fixed\n- Log any fixes that fail with actionable error messages","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-14T18:17:48.411264-08:00","updated_at":"2025-11-14T18:17:58.88609-08:00"}
{"id":"bd-ykqu","title":"Add gate timeout tracking and notification","description":"Implement timeout and notification logic for gates.\n\n## Timeout Behavior\n1. Gate created with timeout (e.g., 30m)\n2. Deacon tracks elapsed time during patrol\n3. If timeout reached:\n - Notify all waiters: \"Gate timed out\"\n - Close gate with timeout reason\n - Waiter can retry, escalate, or fail gracefully\n\n## Notification\n- Use gt mail send to notify waiters\n- Include gate ID, await type, and reason in message\n- Support multiple waiters notification\n\n## Escalation Path\n- Witness sees stuck worker, nudges them\n- Worker can escalate to human if needed","status":"open","priority":2,"issue_type":"task","created_at":"2025-12-23T11:44:40.1825-08:00","updated_at":"2025-12-23T11:44:40.1825-08:00","dependencies":[{"issue_id":"bd-ykqu","depends_on_id":"bd-udsi","type":"parent-child","created_at":"2025-12-23T11:44:53.072862-08:00","created_by":"daemon"},{"issue_id":"bd-ykqu","depends_on_id":"bd-is6m","type":"blocks","created_at":"2025-12-23T11:44:56.595085-08:00","created_by":"daemon"}]}
{"id":"bd-ykqu","title":"Add gate timeout tracking and notification","description":"Implement timeout and notification logic for gates.\n\n## Timeout Behavior\n1. Gate created with timeout (e.g., 30m)\n2. Deacon tracks elapsed time during patrol\n3. If timeout reached:\n - Notify all waiters: \"Gate timed out\"\n - Close gate with timeout reason\n - Waiter can retry, escalate, or fail gracefully\n\n## Notification\n- Use gt mail send to notify waiters\n- Include gate ID, await type, and reason in message\n- Support multiple waiters notification\n\n## Escalation Path\n- Witness sees stuck worker, nudges them\n- Worker can escalate to human if needed","status":"closed","priority":2,"issue_type":"task","created_at":"2025-12-23T11:44:40.1825-08:00","updated_at":"2025-12-23T12:19:44.362527-08:00","closed_at":"2025-12-23T12:19:44.362527-08:00","close_reason":"Moved to gastown: gt-fqcz","dependencies":[{"issue_id":"bd-ykqu","depends_on_id":"bd-udsi","type":"parent-child","created_at":"2025-12-23T11:44:53.072862-08:00","created_by":"daemon"},{"issue_id":"bd-ykqu","depends_on_id":"bd-is6m","type":"blocks","created_at":"2025-12-23T11:44:56.595085-08:00","created_by":"daemon"}]}
{"id":"bd-ymqn","title":"Code review: bd mol bond --ref and bd activity (bd-xo1o work)","description":"Review dave's recent commits for bd-xo1o (Dynamic Molecule Bonding):\n\n## Commits to Review\n- ee04b1ea: feat: add dynamic molecule bonding with --ref flag (bd-xo1o.1)\n- be520d90: feat: add bd activity command for real-time state feed (bd-xo1o.3)\n\n## Review Focus\n1. Code quality and correctness\n2. Error handling\n3. Edge cases\n4. Test coverage\n5. Documentation\n\n## Deliverables\n- File beads for any issues found\n- Note any concerns or suggestions\n- Verify the implementation matches the bd-xo1o epic requirements","status":"closed","priority":1,"issue_type":"task","assignee":"beads/ace","created_at":"2025-12-23T03:47:55.217363-08:00","updated_at":"2025-12-23T04:11:00.226326-08:00","closed_at":"2025-12-23T04:11:00.226326-08:00","close_reason":"Code review completed by ace"}
{"id":"bd-yqhh","title":"bd list --parent: filter by parent issue","description":"Add --parent flag to bd list to filter issues by parent.\n\nExample:\n```bash\nbd list --parent=gt-h5n --status=open\n```\n\nWould show all open children of gt-h5n.\n\nUseful for:\n- Checking epic progress\n- Finding swarmable work within an epic\n- Molecule step listing","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-12-23T01:51:26.830952-08:00","updated_at":"2025-12-23T02:10:12.909803-08:00","closed_at":"2025-12-23T02:10:12.909803-08:00","close_reason":"Implemented --parent flag for bd list. Filters children by parent issue using parent-child dependencies."}
{"id":"bd-z3rf","title":"dave Handoff","description":"attached_molecule: bd-ifuw\nattached_at: 2025-12-23T12:49:44Z","status":"pinned","priority":2,"issue_type":"task","created_at":"2025-12-23T04:33:42.874554-08:00","updated_at":"2025-12-23T04:49:44.1246-08:00"}