Add bd repair-deps command (bd-58)
- Scans all issues for dependencies pointing to non-existent issues - Reports orphaned dependencies with issue ID, depends_on ID, and type - --fix flag automatically removes all orphaned dependencies - --interactive mode prompts for each orphan before removal - Uses direct SQL deletion to avoid foreign key errors on missing issues - JSON output support with --json flag - 4 comprehensive tests covering scan, fix, and multiple dependency types Amp-Thread-ID: https://ampcode.com/threads/T-942a3e75-f90b-45b4-9f88-c7f1b8298cef Co-authored-by: Amp <amp@ampcode.com>
This commit is contained in:
Steve Yegge
+118
-105
@@ -1,3 +1,4 @@
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// Package main implements the bd CLI dependency repair command.
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package main
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import (
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@@ -5,158 +6,170 @@ import (
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"fmt"
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"os"
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"github.com/fatih/color"
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"github.com/spf13/cobra"
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"github.com/steveyegge/beads/internal/storage/sqlite"
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"github.com/steveyegge/beads/internal/types"
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)
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var repairDepsCmd = &cobra.Command{
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Use: "repair-deps",
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Short: "Find and fix orphaned dependency references",
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Long: `Find issues that reference non-existent dependencies and optionally remove them.
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This command scans all issues for dependency references (both blocks and related-to)
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that point to issues that no longer exist in the database.
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Example:
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bd repair-deps # Show orphaned dependencies
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bd repair-deps --fix # Remove orphaned references
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bd repair-deps --json # Output in JSON format`,
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Run: func(cmd *cobra.Command, _ []string) {
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// Check daemon mode - not supported yet (uses direct storage access)
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if daemonClient != nil {
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fmt.Fprintf(os.Stderr, "Error: repair-deps command not yet supported in daemon mode\n")
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fmt.Fprintf(os.Stderr, "Use: bd --no-daemon repair-deps\n")
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os.Exit(1)
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}
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Long: `Scans all issues for dependencies pointing to non-existent issues.
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Reports orphaned dependencies and optionally removes them with --fix.
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Interactive mode with --interactive prompts for each orphan.`,
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Run: func(cmd *cobra.Command, args []string) {
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fix, _ := cmd.Flags().GetBool("fix")
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interactive, _ := cmd.Flags().GetBool("interactive")
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// If daemon is running but doesn't support this command, use direct storage
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if daemonClient != nil && store == nil {
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var err error
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store, err = sqlite.New(dbPath)
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if err != nil {
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fmt.Fprintf(os.Stderr, "Error: failed to open database: %v\n", err)
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os.Exit(1)
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}
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defer func() { _ = store.Close() }()
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}
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ctx := context.Background()
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// Get all issues
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allIssues, err := store.SearchIssues(ctx, "", types.IssueFilter{})
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// Get all dependency records
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allDeps, err := store.GetAllDependencyRecords(ctx)
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if err != nil {
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fmt.Fprintf(os.Stderr, "Error fetching issues: %v\n", err)
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fmt.Fprintf(os.Stderr, "Error: failed to get dependencies: %v\n", err)
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os.Exit(1)
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}
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// Build ID existence map
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existingIDs := make(map[string]bool)
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for _, issue := range allIssues {
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existingIDs[issue.ID] = true
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// Get all issues to check existence
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issues, err := store.SearchIssues(ctx, "", types.IssueFilter{})
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if err != nil {
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fmt.Fprintf(os.Stderr, "Error: failed to list issues: %v\n", err)
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os.Exit(1)
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}
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// Build set of valid issue IDs
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validIDs := make(map[string]bool)
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for _, issue := range issues {
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validIDs[issue.ID] = true
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}
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// Find orphaned dependencies
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type orphanedDep struct {
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IssueID string
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OrphanedID string
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DepType string
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type orphan struct {
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issueID string
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dependsOnID string
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depType types.DependencyType
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}
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var orphaned []orphanedDep
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var orphans []orphan
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for _, issue := range allIssues {
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// Check dependencies
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for _, dep := range issue.Dependencies {
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if !existingIDs[dep.DependsOnID] {
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orphaned = append(orphaned, orphanedDep{
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IssueID: issue.ID,
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OrphanedID: dep.DependsOnID,
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DepType: string(dep.Type),
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for issueID, deps := range allDeps {
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if !validIDs[issueID] {
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// The issue itself doesn't exist, skip (will be cleaned up separately)
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continue
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}
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for _, dep := range deps {
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if !validIDs[dep.DependsOnID] {
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orphans = append(orphans, orphan{
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issueID: dep.IssueID,
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dependsOnID: dep.DependsOnID,
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depType: dep.Type,
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})
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}
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}
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}
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// Output results
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if jsonOutput {
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result := map[string]interface{}{
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"orphaned_count": len(orphaned),
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"fixed": fix,
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"orphaned_deps": []map[string]interface{}{},
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"orphans_found": len(orphans),
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"orphans": []map[string]string{},
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}
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for _, o := range orphaned {
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result["orphaned_deps"] = append(result["orphaned_deps"].([]map[string]interface{}), map[string]interface{}{
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"issue_id": o.IssueID,
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"orphaned_id": o.OrphanedID,
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"dep_type": o.DepType,
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})
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if len(orphans) > 0 {
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orphanList := make([]map[string]string, len(orphans))
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for i, o := range orphans {
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orphanList[i] = map[string]string{
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"issue_id": o.issueID,
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"depends_on_id": o.dependsOnID,
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"type": string(o.depType),
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}
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}
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result["orphans"] = orphanList
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}
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if fix || interactive {
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result["fixed"] = len(orphans)
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}
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outputJSON(result)
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return
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}
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// Human-readable output
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if len(orphaned) == 0 {
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fmt.Println("No orphaned dependencies found!")
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// Report results
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if len(orphans) == 0 {
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green := color.New(color.FgGreen).SprintFunc()
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fmt.Printf("\n%s No orphaned dependencies found\n\n", green("✓"))
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return
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}
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fmt.Printf("Found %d orphaned dependencies:\n\n", len(orphaned))
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for _, o := range orphaned {
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fmt.Printf(" %s: depends on %s (%s) - DELETED\n", o.IssueID, o.OrphanedID, o.DepType)
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yellow := color.New(color.FgYellow).SprintFunc()
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fmt.Printf("\n%s Found %d orphaned dependencies:\n\n", yellow("⚠"), len(orphans))
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for i, o := range orphans {
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fmt.Printf("%d. %s → %s (%s) [%s does not exist]\n",
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i+1, o.issueID, o.dependsOnID, o.depType, o.dependsOnID)
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}
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fmt.Println()
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if !fix {
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fmt.Printf("\nRun 'bd repair-deps --fix' to remove these references.\n")
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return
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}
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// Fix orphaned dependencies
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fmt.Printf("\nRemoving orphaned dependencies...\n")
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// Group by issue for efficient updates
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orphansByIssue := make(map[string][]string)
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for _, o := range orphaned {
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orphansByIssue[o.IssueID] = append(orphansByIssue[o.IssueID], o.OrphanedID)
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}
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fixed := 0
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for issueID, orphanedIDs := range orphansByIssue {
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// Get current issue to verify
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issue, err := store.GetIssue(ctx, issueID)
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if err != nil {
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fmt.Fprintf(os.Stderr, "Error fetching %s: %v\n", issueID, err)
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continue
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}
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// Collect orphaned dependency IDs to remove
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orphanedSet := make(map[string]bool)
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for _, orphanedID := range orphanedIDs {
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orphanedSet[orphanedID] = true
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}
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// Build list of dependencies to keep
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validDeps := []*types.Dependency{}
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for _, dep := range issue.Dependencies {
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if !orphanedSet[dep.DependsOnID] {
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validDeps = append(validDeps, dep)
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// Fix if requested
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if interactive {
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fixed := 0
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for _, o := range orphans {
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fmt.Printf("Remove dependency %s → %s (%s)? [y/N]: ", o.issueID, o.dependsOnID, o.depType)
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var response string
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fmt.Scanln(&response)
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if response == "y" || response == "Y" {
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// Use direct SQL to remove orphaned dependencies
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// RemoveDependency tries to mark the depends_on issue as dirty, which fails for orphans
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db := store.UnderlyingDB()
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_, err := db.ExecContext(ctx, "DELETE FROM dependencies WHERE issue_id = ? AND depends_on_id = ?",
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o.issueID, o.dependsOnID)
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if err != nil {
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fmt.Fprintf(os.Stderr, "Error removing dependency: %v\n", err)
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} else {
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// Mark the issue as dirty
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_, _ = db.ExecContext(ctx, "INSERT OR IGNORE INTO dirty_issues (issue_id) VALUES (?)", o.issueID)
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fixed++
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}
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}
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}
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// Update via storage layer
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// We need to remove each orphaned dependency individually
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for _, orphanedID := range orphanedIDs {
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if err := store.RemoveDependency(ctx, issueID, orphanedID, actor); err != nil {
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fmt.Fprintf(os.Stderr, "Error removing %s from %s: %v\n", orphanedID, issueID, err)
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continue
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markDirtyAndScheduleFlush()
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green := color.New(color.FgGreen).SprintFunc()
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fmt.Printf("\n%s Fixed %d orphaned dependencies\n\n", green("✓"), fixed)
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} else if fix {
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db := store.UnderlyingDB()
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for _, o := range orphans {
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// Use direct SQL to remove orphaned dependencies
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_, err := db.ExecContext(ctx, "DELETE FROM dependencies WHERE issue_id = ? AND depends_on_id = ?",
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o.issueID, o.dependsOnID)
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if err != nil {
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fmt.Fprintf(os.Stderr, "Error removing dependency %s → %s: %v\n",
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o.issueID, o.dependsOnID, err)
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} else {
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// Mark the issue as dirty
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_, _ = db.ExecContext(ctx, "INSERT OR IGNORE INTO dirty_issues (issue_id) VALUES (?)", o.issueID)
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}
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fmt.Printf("✓ Removed %s from %s dependencies\n", orphanedID, issueID)
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fixed++
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}
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markDirtyAndScheduleFlush()
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green := color.New(color.FgGreen).SprintFunc()
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fmt.Printf("%s Fixed %d orphaned dependencies\n\n", green("✓"), len(orphans))
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} else {
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fmt.Printf("Run with --fix to automatically remove orphaned dependencies\n")
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fmt.Printf("Run with --interactive to review each dependency\n\n")
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}
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// Schedule auto-flush
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markDirtyAndScheduleFlush()
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fmt.Printf("\nRepaired %d orphaned dependencies.\n", fixed)
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},
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}
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func init() {
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repairDepsCmd.Flags().Bool("fix", false, "Remove orphaned dependency references")
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repairDepsCmd.Flags().Bool("fix", false, "Automatically remove orphaned dependencies")
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repairDepsCmd.Flags().Bool("interactive", false, "Interactively review each orphaned dependency")
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rootCmd.AddCommand(repairDepsCmd)
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}
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Reference in New Issue
Block a user