Remove bd mol run - orchestration belongs in gt
bd mol run was a convenience combo (pour + assign + pin + start) that felt like orchestration but lived in the data layer. This blurred the architectural boundary between bd (data) and gt (orchestration). - Delete cmd/bd/mol_run.go entirely - Update mol.go help text to remove run reference - Update mol_current.go to suggest bd pour instead gt spawn will implement the orchestration combo by calling the atomic bd commands (pour, update, pin) directly. Closes bd-00u3 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
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@@ -100,7 +100,7 @@ The output shows all steps with status indicators:
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}
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fmt.Println(".")
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fmt.Println("\nTo start work on a molecule:")
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fmt.Println(" bd mol run <proto-id> # Spawn and start a new molecule")
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fmt.Println(" bd pour <proto-id> # Instantiate a molecule from template")
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fmt.Println(" bd update <step-id> --status in_progress # Claim a step")
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return
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}
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