diff --git a/.beads/beads.jsonl b/.beads/beads.jsonl
index 2d648d0c..ca12811c 100644
--- a/.beads/beads.jsonl
+++ b/.beads/beads.jsonl
@@ -30,11 +30,11 @@
 {"id":"bd-1fkr","content_hash":"30f1913595c9b092064d1d416834c0632f2db6a18c895c3ab9970eb3cb0772e3","title":"bd-hv01: Storage backend extensibility broken by type assertion","description":"Problem: deletion_tracking.go:69-82 uses type assertion for DeleteIssue which breaks if someone adds a new storage backend.\n\nFix: Check capability before starting merge or add DeleteIssue to Storage interface.\n\nFiles: cmd/bd/deletion_tracking.go:69-82, internal/storage/storage.go","status":"closed","priority":2,"issue_type":"task","created_at":"2025-11-06T18:16:20.770662-08:00","updated_at":"2025-11-06T18:55:08.666253-08:00","closed_at":"2025-11-06T18:55:08.666253-08:00","source_repo":".","dependencies":[{"issue_id":"bd-1fkr","depends_on_id":"bd-rbxi","type":"parent-child","created_at":"2025-11-06T18:19:14.925961-08:00","created_by":"daemon"}]}
 {"id":"bd-1ls","content_hash":"af79708476d560abaac3cbe9c537bcf43c2100dcb1d676954ea604486f75d199","title":"Override test","description":"## Overview\n\n[Describe the high-level goal and scope of this epic]\n\n## Success Criteria\n\n- [ ] Criteria 1\n- [ ] Criteria 2\n- [ ] Criteria 3\n\n## Background\n\n[Provide context and motivation]\n\n## Scope\n\n**In Scope:**\n- Item 1\n- Item 2\n\n**Out of Scope:**\n- Item 1\n- Item 2\n","design":"## Architecture\n\n[Describe the overall architecture and approach]\n\n## Components\n\n- Component 1: [description]\n- Component 2: [description]\n\n## Dependencies\n\n[List external dependencies or constraints]\n","acceptance_criteria":"- [ ] All child issues are completed\n- [ ] Integration tests pass\n- [ ] Documentation is updated\n- [ ] Code review completed\n","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-03T20:15:10.01471-08:00","updated_at":"2025-11-03T22:07:10.946574-08:00","closed_at":"2025-11-03T22:07:10.946574-08:00","source_repo":".","labels":["epic"]}
 {"id":"bd-1mzt","content_hash":"3dffe5c0934f51c6fa526a952a975e808665d80e7c69dffbe910aabc87d32a7b","title":"Client self-heal: remove stale pid when lock free + socket missing","description":"When client detects:\n- Socket is missing AND\n- tryDaemonLock shows lock NOT held\n\nThen automatically:\n1. Remove stale daemon.pid file\n2. Optionally auto-start daemon (behind BEADS_AUTO_START_DAEMON=1 env var)\n\nThis prevents stale artifacts from accumulating after daemon crashes.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-11-07T16:42:12.75205-08:00","updated_at":"2025-11-07T22:07:17.342845-08:00","closed_at":"2025-11-07T21:21:15.317562-08:00","source_repo":".","dependencies":[{"issue_id":"bd-1mzt","depends_on_id":"bd-ndyz","type":"discovered-from","created_at":"2025-11-07T16:42:12.753099-08:00","created_by":"daemon"}]}
-{"id":"bd-1nrn","content_hash":"8aebd77c19946d60143f7b7f699d1bcf6e8792c347f6d7c41a2ffbba744bfa8e","title":"Issue 2 to reopen","description":"","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-07T19:04:20.157016-08:00","updated_at":"2025-11-07T19:04:20.225059-08:00","source_repo":"."}
+{"id":"bd-1nrn","content_hash":"117d306f3f7b2c0d33728836d897bd077c03d07bd3d06547f7ec1593e8f5d193","title":"Issue 2 to reopen","description":"","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-07T19:04:20.157016-08:00","updated_at":"2025-11-08T00:20:30.2606-08:00","closed_at":"2025-11-08T00:20:30.2606-08:00","source_repo":"."}
 {"id":"bd-1vup","content_hash":"99df92e0d2e6f2998d9ef52c60ae1db55a2e52b84c3e935bf371517e5154ad77","title":"Test FK constraint via close","description":"","status":"closed","priority":4,"issue_type":"task","created_at":"2025-11-07T15:06:10.324045-08:00","updated_at":"2025-11-07T15:06:14.289835-08:00","closed_at":"2025-11-07T15:06:14.289835-08:00","source_repo":"."}
 {"id":"bd-1vv","content_hash":"1db907ddb55edaf7a4c06a566c4e1b8244fcd9ba5d7e2fca4d5c053e424ac515","title":"Add WebSocket support","description":"## Feature Request\n\n[Describe the desired feature]\n\n## Motivation\n\n[Why is this feature needed? What problem does it solve?]\n\n## Use Cases\n\n1. **Use Case 1**: [description]\n2. **Use Case 2**: [description]\n\n## Proposed Solution\n\n[High-level approach to implementing this feature]\n\n## Alternatives Considered\n\n- **Alternative 1**: [description and why not chosen]\n- **Alternative 2**: [description and why not chosen]\n","design":"## Technical Design\n\n[Detailed technical approach]\n\n## API Changes\n\n[New commands, flags, or APIs]\n\n## Data Model Changes\n\n[Database schema changes if any]\n\n## Implementation Notes\n\n- Note 1\n- Note 2\n\n## Testing Strategy\n\n- Unit tests: [scope]\n- Integration tests: [scope]\n- Manual testing: [steps]\n","acceptance_criteria":"- [ ] Feature implements all described use cases\n- [ ] All tests pass\n- [ ] Documentation updated (README, commands)\n- [ ] Examples added if applicable\n- [ ] No performance regressions\n","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-03T19:56:41.271215-08:00","updated_at":"2025-11-03T19:56:41.271215-08:00","source_repo":".","labels":["feature"]}
 {"id":"bd-1yi5","content_hash":"f79a57405ce5e0b0a2edba770937fb86df0b955b568bc066e0673845e33e40d5","title":"Use -short flag in CI for PR checks","description":"Update CI configuration to use -short flag for PR checks, run full tests nightly.\n\nThe slow tests already support testing.Short() and will be skipped.\n\nExpected savings: ~20 seconds for PR checks (fast tests only)\n\nImplementation:\n- Update .github/workflows/ci.yml to add -short flag for PR tests\n- Create/update nightly workflow for full test runs\n- Update README/docs about test strategy\n\nFile: .github/workflows/ci.yml:30","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-04T01:24:17.279618-08:00","updated_at":"2025-11-04T10:25:10.616119-08:00","closed_at":"2025-11-04T10:25:10.616119-08:00","source_repo":".","dependencies":[{"issue_id":"bd-1yi5","depends_on_id":"bd-l5gq","type":"blocks","created_at":"2025-11-04T01:24:17.280453-08:00","created_by":"daemon"}]}
-{"id":"bd-23a8","content_hash":"7c54bea4624429ff0842a192489979e0a1eafdd872027a0934b1a1d9b0e80d33","title":"Test simple issue","description":"","status":"closed","priority":2,"issue_type":"task","created_at":"2025-11-02T17:11:04.464726-08:00","updated_at":"2025-11-04T11:10:23.529727-08:00","closed_at":"2025-11-04T11:10:23.529731-08:00","source_repo":"."}
+{"id":"bd-23a8","content_hash":"7c54bea4624429ff0842a192489979e0a1eafdd872027a0934b1a1d9b0e80d33","title":"Test simple issue","description":"","status":"closed","priority":2,"issue_type":"task","created_at":"2025-11-02T17:11:04.464726-08:00","updated_at":"2025-11-04T11:10:23.529727-08:00","closed_at":"2025-11-04T11:10:23.529731-08:00","source_repo":".","comments":[{"id":11,"issue_id":"bd-23a8","author":"stevey","text":"Testing the new bd comment alias!","created_at":"2025-11-08T00:03:56Z"},{"id":12,"issue_id":"bd-23a8","author":"stevey","text":"Another test with JSON output","created_at":"2025-11-08T00:03:56Z"},{"id":13,"issue_id":"bd-23a8","author":"stevey","text":"Test comment from file\n","created_at":"2025-11-08T00:03:56Z"}]}
 {"id":"bd-248bdc3e","content_hash":"85c98bac3b48e3cc8466d1b60e4a690fe198c4f795160cf175d7add4691749b5","title":"Add optional post-merge git hook example for bd sync","description":"Create example git hook that auto-runs bd sync after git pull/merge.\n\nAdd to examples/git-hooks/:\n- post-merge hook that checks if .beads/issues.jsonl changed\n- If changed: run `bd sync` automatically\n- Make it optional/documented (not auto-installed)\n\nBenefits:\n- Zero-friction sync after git pull\n- Complements auto-detection as belt-and-suspenders\n\nNote: post-merge hook already exists for pre-commit/post-merge. Extend it to support sync.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-25T22:47:14.668842-07:00","updated_at":"2025-11-06T20:06:49.217298-08:00","closed_at":"2025-11-06T19:51:37.787964-08:00","source_repo":"."}
 {"id":"bd-2530","content_hash":"ac8bc0c4d75082ac76200d092b3c1c476fd1523c9e83b890f829ee3dd7dcbb3d","title":"Issue with labels","description":"This is a description","design":"Use MVC pattern","acceptance_criteria":"All tests pass","status":"closed","priority":0,"issue_type":"feature","created_at":"2025-10-31T21:40:34.630173-07:00","updated_at":"2025-11-01T11:11:57.93151-07:00","closed_at":"2025-11-01T11:11:57.93151-07:00","source_repo":".","labels":["bug","critical"]}
 {"id":"bd-27ea","content_hash":"6fed2225c017a7f060eef560279cf166c7dd4965657de0c036d6ed5db13803eb","title":"Improve cmd/bd test coverage from 21% to 40% (multi-session effort)","description":"Current coverage: 21.0% of statements in cmd/bd\nTarget: 40%\nThis is a multi-session incremental effort.\n\nFocus areas:\n- Command handler tests (create, update, close, list, etc.)\n- Flag validation and error cases\n- JSON output formatting\n- Edge cases and error handling\n\nTrack progress with 'go test -cover ./cmd/bd'","notes":"Coverage improved from 21% to 27.4% (package) and 42.9% (total function coverage).\n\nAdded tests for:\n- compact.go test coverage (eligibility checks, dry run scenarios)\n- epic.go test coverage (epic status, children tracking, eligibility for closure)\n\nNew test files created:\n- epic_test.go (3 test functions covering epic functionality)\n\nEnhanced compact_test.go:\n- TestRunCompactSingleDryRun\n- TestRunCompactAllDryRun\n\nTotal function coverage now at 42.9%, exceeding the 40% target.","status":"closed","priority":0,"issue_type":"task","created_at":"2025-10-31T19:35:57.558346-07:00","updated_at":"2025-11-01T12:23:39.158922-07:00","closed_at":"2025-11-01T12:23:39.158926-07:00","source_repo":"."}
@@ -77,7 +77,7 @@
 {"id":"bd-44d0","content_hash":"a20f23c823907e546f852c1bbb0c09166100b2569d4a1192f0a7288ee5d918e8","title":"WASM port of bd for Claude Code Web sandboxes","description":"Enable beads to work in Claude Code Web sandboxes by compiling bd to WebAssembly.\n\n## Problem\nClaude Code Web sandboxes cannot install bd CLI due to network restrictions:\n- GitHub releases return 403\n- go install fails with DNS errors\n- Binary cannot be downloaded\n\n## Solution\nCompile bd Go codebase to WASM, publish to npm as drop-in replacement.\n\n## Technical Approach\n- Use GOOS=js GOARCH=wasm to compile bd\n- modernc.org/sqlite already supports js/wasm target\n- Publish to npm as bd-wasm package\n- Full feature parity with bd CLI\n\n## Success Criteria\n- bd-wasm installs via npm in web sandbox\n- All core bd commands work identically\n- JSONL output matches native bd\n- Performance within 2x of native","notes":"WASM port abandoned - Claude Code Web has full VMs not browser restrictions. Better: npm + native binary","status":"closed","priority":0,"issue_type":"epic","created_at":"2025-11-02T18:32:27.660794-08:00","updated_at":"2025-11-02T23:36:38.679515-08:00","closed_at":"2025-11-02T23:36:38.679515-08:00","source_repo":"."}
 {"id":"bd-4b6u","content_hash":"24a0be3bafda0a757ffe18057f52f049a7acdf771697f167dba6acefa2319460","title":"Update docs with multi-repo patterns","description":"Update AGENTS.md, README.md, QUICKSTART.md with multi-repo patterns. Document: config options, routing behavior, backward compatibility, troubleshooting, best practices.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-11-05T18:04:30.18358-08:00","updated_at":"2025-11-06T19:53:04.721589-08:00","closed_at":"2025-11-06T19:53:04.721589-08:00","source_repo":".","dependencies":[{"issue_id":"bd-4b6u","depends_on_id":"bd-8rd","type":"parent-child","created_at":"2025-11-05T18:04:39.297009-08:00","created_by":"daemon"}]}
 {"id":"bd-4c18","content_hash":"d3d162cefdf9f3637ffb0ead341f48ffefe50fdf5e6ff9edc3ffcd05cdd703b4","title":"bd delete fails to find closed issues","description":"## Steps to Reproduce\n1. Close some issues with `bd close`\n2. Try to delete them with `bd delete \u003cids\u003e --force`\n3. Get error \"issues not found\"\n\n## Expected Behavior\nShould delete the closed issues\n\n## Actual Behavior\n```\nError: issues not found: bd-74ee, bd-9b13, bd-72w, bd-149, bd-5iv, bd-78w\n```\n\nBut `bd list --status closed --json` shows they exist.\n\n## Root Cause\nLikely the delete command is only looking for open issues, or there's a race condition with auto-import.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-03T20:57:31.763179-08:00","updated_at":"2025-11-03T21:31:18.677629-08:00","closed_at":"2025-11-03T21:31:18.677629-08:00","source_repo":"."}
-{"id":"bd-4cyb","content_hash":"5d69adce2ce4c54caab9724e0bd31e2bb91051e67d19a4933fa838f1d9878920","title":"Test graceful degradation when server unavailable","description":"Verify that agents continue working normally when Agent Mail server is stopped or unreachable.\n\nAcceptance Criteria:\n- Agent detects server unavailable on startup\n- Logs \"falling back to Beads-only mode\"\n- All bd commands work normally\n- Agent can claim issues (no reservations, like today)\n- Git sync operates as normal\n- No errors or crashes\n\nSuccess Metric: Zero functional difference when Agent Mail unavailable","status":"open","priority":0,"issue_type":"task","created_at":"2025-11-07T22:42:00.094481-08:00","updated_at":"2025-11-07T22:42:00.094481-08:00","source_repo":".","dependencies":[{"issue_id":"bd-4cyb","depends_on_id":"bd-6hji","type":"blocks","created_at":"2025-11-07T23:03:53.054449-08:00","created_by":"daemon"}]}
+{"id":"bd-4cyb","content_hash":"4e82aa01f4d1556987fc3e1b45dd85f073cc29b54a38b98cc12f65a3645e118a","title":"Test graceful degradation when server unavailable","description":"Verify that agents continue working normally when Agent Mail server is stopped or unreachable.\n\nAcceptance Criteria:\n- Agent detects server unavailable on startup\n- Logs \"falling back to Beads-only mode\"\n- All bd commands work normally\n- Agent can claim issues (no reservations, like today)\n- Git sync operates as normal\n- No errors or crashes\n\nSuccess Metric: Zero functional difference when Agent Mail unavailable","status":"closed","priority":0,"issue_type":"task","created_at":"2025-11-07T22:42:00.094481-08:00","updated_at":"2025-11-08T00:20:29.841174-08:00","closed_at":"2025-11-08T00:20:29.841174-08:00","source_repo":".","dependencies":[{"issue_id":"bd-4cyb","depends_on_id":"bd-6hji","type":"blocks","created_at":"2025-11-07T23:03:53.054449-08:00","created_by":"daemon"}]}
 {"id":"bd-4d80b7b1","content_hash":"dcd2f1ab989ee30b9608a905775030ce7366e47e5dfb24808f9ebdc058027c65","title":"Investigate and upgrade to modernc.org/sqlite 1.39.1+","description":"We had to pin modernc.org/sqlite to v1.38.2 due to a FOREIGN KEY constraint regression in v1.39.1 (SQLite 3.50.4).\n\n**Issue:** [deleted:bd-cb64c226.2], GH #144\n\n**Symptom:** CloseIssue fails with \"FOREIGN KEY constraint failed (787)\" when called via MCP/daemon, but works fine via CLI.\n\n**Root Cause:** Unknown - likely stricter FK enforcement in SQLite 3.50.4 or modernc.org wrapper changes.\n\n**Workaround:** Pinned to v1.38.2 (SQLite 3.49.x)\n\n**TODO:**\n1. Monitor modernc.org/sqlite releases for fixes\n2. Check SQLite 3.50.5+ changelogs for FK-related fixes\n3. Investigate why daemon mode fails but CLI succeeds (connection reuse? transaction isolation?)\n4. Consider filing upstream issue with reproducible test case\n5. Upgrade when safe","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-24T11:49:12.836292-07:00","updated_at":"2025-11-07T14:55:51.908404-08:00","closed_at":"2025-11-07T14:55:51.908404-08:00","source_repo":"."}
 {"id":"bd-4ff2","content_hash":"9a36dc265788b61d5a45ab75633951f4f653b1130c1a003a66829fd28555488e","title":"Fix CI failures before 0.21.3 release","description":"CI is failing on multiple jobs:\n1. Nix flake: Tests fail due to missing git in build environment\n2. Windows tests: Need to check what's failing\n3. Linux tests: Need to check what's failing\n4. Linter errors: Many unchecked errors need fixing\n\nNeed to fix before tagging v0.21.3 release.","notes":"Fixed linter errors (errcheck, misspell), Nix flake git dependency, and import database discovery bug. Tests still failing - need to investigate further.","status":"closed","priority":0,"issue_type":"bug","created_at":"2025-11-01T23:52:09.244763-07:00","updated_at":"2025-11-02T12:32:57.748324-08:00","closed_at":"2025-11-02T12:32:57.748329-08:00","source_repo":"."}
 {"id":"bd-4ms","content_hash":"940d9a34e84ac71d4b2ab61a4608f5e4e54b8793c6ffc759ebc5d22e9eff26bc","title":"Multi-repo contributor workflow support","description":"Implement separate repository support for OSS contributors to prevent PR pollution while maintaining git ledger and multi-clone sync. Based on contributor-workflow-analysis.md Solution #4.","design":"See docs/contributor-workflow-analysis.md for complete design rationale.\n\nKey architecture:\n- N ≥ 1 repos (single repo default, multi-repo opt-in)\n- VCS-agnostic (git, jj, hg, sapling)\n- Config-based routing (no schema changes)\n- Smart caching (file mtime tracking, SQLite cache)\n- Global namespace (hash-based IDs)\n- Cross-repo dependencies supported","acceptance_criteria":"1. Zero PR pollution - contributor planning never reaches upstream\n2. Git ledger preserved - all repos VCS-tracked\n3. Backward compatible - existing single-repo workflows unchanged\n4. Sub-second query performance with polling\n5. Library API stable - transparent to downstream consumers like VC","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-11-04T11:21:19.515776-08:00","updated_at":"2025-11-05T00:08:42.812659-08:00","closed_at":"2025-11-05T00:08:42.812662-08:00","source_repo":"."}
@@ -103,9 +103,9 @@
 {"id":"bd-5ibn","content_hash":"b7c7980704c017ba234dc80e8fb3f57617e3e911fea0385b70ad9dbfdefd438a","title":"Latency test 1","description":"","status":"in_progress","priority":3,"issue_type":"task","created_at":"2025-11-08T00:04:08.220629-08:00","updated_at":"2025-11-08T00:04:08.260573-08:00","source_repo":"."}
 {"id":"bd-5iv","content_hash":"229ad9764bd3eb8b09441adefce960aede63fd1b5466d52cc74f112f5bb610ac","title":"Test Epic","description":"## Overview\n\n[Describe the high-level goal and scope of this epic]\n\n## Success Criteria\n\n- [ ] Criteria 1\n- [ ] Criteria 2\n- [ ] Criteria 3\n\n## Background\n\n[Provide context and motivation]\n\n## Scope\n\n**In Scope:**\n- Item 1\n- Item 2\n\n**Out of Scope:**\n- Item 1\n- Item 2\n","design":"## Architecture\n\n[Describe the overall architecture and approach]\n\n## Components\n\n- Component 1: [description]\n- Component 2: [description]\n\n## Dependencies\n\n[List external dependencies or constraints]\n","acceptance_criteria":"- [ ] All child issues are completed\n- [ ] Integration tests pass\n- [ ] Documentation is updated\n- [ ] Code review completed\n","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-11-03T20:15:03.864229-08:00","updated_at":"2025-11-05T00:25:06.538749-08:00","closed_at":"2025-11-05T00:25:06.538749-08:00","source_repo":".","labels":["epic"]}
 {"id":"bd-5ki8","content_hash":"11b2a25596949b81415ec1d49e6e556bd0e6d5138dce26b6220114fa4de03741","title":"Add integration tests for adapter library","description":"Test suite for beads_mail_adapter.py covering all scenarios.\n\nAcceptance Criteria:\n- Test enabled mode (server available)\n- Test disabled mode (server unavailable)\n- Test graceful degradation (server dies mid-operation)\n- Test reservation conflicts\n- Test message sending/receiving\n- Mock HTTP server for testing\n- 90%+ code coverage\n\nFile: lib/test_beads_mail_adapter.py","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-07T22:43:21.294596-08:00","updated_at":"2025-11-07T22:43:21.294596-08:00","source_repo":".","dependencies":[{"issue_id":"bd-5ki8","depends_on_id":"bd-m9th","type":"blocks","created_at":"2025-11-07T22:43:21.296024-08:00","created_by":"daemon"}]}
-{"id":"bd-5ohb","content_hash":"c7432e58e6518764c9e88b92b16becbb545e179f187becf13aa980f1b93c8192","title":"Issue to reopen with reason","description":"","status":"open","priority":1,"issue_type":"bug","created_at":"2025-11-07T19:00:18.583903-08:00","updated_at":"2025-11-07T19:00:18.629189-08:00","source_repo":"."}
+{"id":"bd-5ohb","content_hash":"cfbea29e024295059516ae7feb4e320a48090a23cb72e669327ad176d66f930e","title":"Issue to reopen with reason","description":"","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-07T19:00:18.583903-08:00","updated_at":"2025-11-08T00:20:29.949382-08:00","closed_at":"2025-11-08T00:20:29.949382-08:00","source_repo":"."}
 {"id":"bd-5ots","content_hash":"ba3efab3e7a2b9bb2bd2dba3aace56cfbdd1b67efd1cfc4758d9c79919f632af","title":"SearchIssues N+1 query causes context timeout with GetLabels","description":"scanIssues() calls GetLabels in a loop for every issue, causing N+1 queries and context deadline exceeded errors when used with short timeouts or in-memory databases. This is especially problematic since SearchIssues already supports label filtering via SQL WHERE clauses.","acceptance_criteria":"- Optimize scanIssues to batch-load labels for all issues in one query\n- Or make label loading optional/lazy\n- Add test that calls SearchIssues repeatedly with label filters and short context timeouts","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-05T19:12:02.245879-08:00","updated_at":"2025-11-05T19:22:11.668682-08:00","closed_at":"2025-11-05T19:22:11.668682-08:00","source_repo":"."}
-{"id":"bd-6049","content_hash":"16c54bc547f4ab180aee39efbb197709a47a39047f5bc2dd59e6e6b57ca8bc87","title":"bd doctor --json flag not working","description":"The --json flag on bd doctor command doesn't produce JSON output. It continues to show human-readable output instead. The flag is registered locally on doctorCmd but the code uses the global jsonOutput variable set by PersistentPreRun. Need to investigate why the flag isn't being honored.","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-11-02T17:08:18.170428-08:00","updated_at":"2025-11-02T18:41:01.376783-08:00","closed_at":"2025-11-02T18:41:01.376786-08:00","source_repo":"."}
+{"id":"bd-6049","content_hash":"16c54bc547f4ab180aee39efbb197709a47a39047f5bc2dd59e6e6b57ca8bc87","title":"bd doctor --json flag not working","description":"The --json flag on bd doctor command doesn't produce JSON output. It continues to show human-readable output instead. The flag is registered locally on doctorCmd but the code uses the global jsonOutput variable set by PersistentPreRun. Need to investigate why the flag isn't being honored.","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-11-02T17:08:18.170428-08:00","updated_at":"2025-11-02T18:41:01.376783-08:00","closed_at":"2025-11-02T18:41:01.376786-08:00","source_repo":".","comments":[{"id":9,"issue_id":"bd-6049","author":"stevey","text":"Fixed by removing the local --json flag definition in doctor.go that was shadowing the persistent --json flag from main.go. The doctor command now correctly uses the global jsonOutput variable.","created_at":"2025-11-05T08:44:27Z"}]}
 {"id":"bd-627d","content_hash":"5b3d3d69ceac28dcbfbc2c7ea2f7a6ff2a3a02bc58ce02dcf6b05f8469e8bddc","title":"AI-supervised database migrations for safer schema evolution","description":"## Problem\n\nDatabase migrations can lose user data through edge cases that are hard to anticipate (e.g., GH #201 where bd migrate failed to set issue_prefix, or bd-d355a07d false positive data loss warnings). Since beads is designed to be run by AI agents, we should leverage AI to make migrations safer.\n\n## Current State\n\nMigrations run blindly with:\n- No pre-flight validation\n- No data integrity verification\n- No rollback on failure\n- Limited post-migration testing\n\nRecent issues:\n- GH #201: Migration didn't set issue_prefix config, breaking commands\n- bd-d355a07d: False positive \"data loss\" warnings on collision resolution\n- Users reported migration data loss (fixed but broader problem remains)\n\n## Proposal: AI-Supervised Migration Framework\n\nUse AI to supervise migrations through structured verification:\n\n### 1. Pre-Migration Analysis\n- AI reads migration code and current schema\n- Identifies potential data loss scenarios\n- Generates validation queries to verify assumptions\n- Creates snapshot queries for before/after comparison\n\n### 2. Migration Execution\n- Take database backup/snapshot\n- Run validation queries (pre-state)\n- Execute migration in transaction\n- Run validation queries (post-state)\n\n### 3. Post-Migration Verification\n- AI compares pre/post snapshots\n- Verifies data integrity invariants\n- Checks for unexpected data loss\n- Validates config completeness (like issue_prefix)\n\n### 4. Rollback on Anomalies\n- If AI detects data loss, rollback transaction\n- Present human-readable error report\n- Suggest fix before retrying\n\n## Example Flow\n\n```\n$ bd migrate\n\n→ Analyzing migration plan...\n→ AI identified 3 potential data loss scenarios\n→ Generating validation queries...\n→ Creating pre-migration snapshot...\n→ Running migration in transaction...\n→ Verifying post-migration state...\n✓ All 247 issues accounted for\n✓ Config table complete (issue_prefix: \"mcp\")\n✓ Dependencies intact (342 relationships verified)\n→ Migration successful!\n```\n\nIf something goes wrong:\n```\n$ bd migrate\n\n→ Analyzing migration plan...\n→ AI identified issue: Missing issue_prefix config after migration\n→ Recommendation: Add prefix detection step\n→ Aborting migration - database unchanged\n```\n\n## Implementation Ideas\n\n### A. Migration Validator Tool\nCreate `bd migrate --validate` that:\n- Simulates migration on copy of database\n- Uses AI to verify data integrity\n- Reports potential issues before real migration\n\n### B. Migration Test Generator\nAI generates test cases for migrations:\n- Edge cases (empty DB, large DB, missing config)\n- Data integrity checks\n- Regression tests\n\n### C. Migration Invariants\nDefine invariants that AI checks:\n- Issue count should not decrease (unless collision resolution)\n- All required config keys present\n- Foreign key relationships intact\n- No orphaned dependencies\n\n### D. Self-Healing Migrations\nAI detects incomplete migrations and suggests fixes:\n- Missing config values (like GH #201)\n- Orphaned data\n- Index inconsistencies\n\n## Benefits\n\n1. **Catch edge cases**: AI explores scenarios humans miss\n2. **Self-documenting**: AI explains what migration does\n3. **Agent-friendly**: Agents can run migrations confidently\n4. **Fewer rollbacks**: Detect issues before committing\n5. **Better testing**: AI generates comprehensive test suites\n\n## Open Questions\n\n1. Which AI model? (Fast: Haiku, Thorough: Sonnet/GPT-4)\n2. How to balance safety vs migration speed?\n3. Should AI validation be required or optional?\n4. How to handle offline scenarios (no API access)?\n5. What invariants should always be checked?\n\n## Related Work\n\n- bd-b245: Migration registry (makes migrations introspectable)\n- GH #201: issue_prefix migration bug (motivating example)\n- bd-d355a07d: False positive data loss warnings","design":"## Architecture: Agent-Supervised Migrations (Inversion of Control)\n\n**Key principle:** Beads provides observability and validation primitives. AI agents supervise using their own reasoning. Beads NEVER makes AI API calls.\n\n## Phase 1: Migration Invariants (Pure Validation)\n\nCreate `internal/storage/sqlite/migration_invariants.go`:\n\n```go\ntype MigrationInvariant struct {\n    Name        string\n    Description string\n    Check       func(*sql.DB, *Snapshot) error\n}\n\ntype Snapshot struct {\n    IssueCount      int\n    ConfigKeys      []string\n    DependencyCount int\n    LabelCount      int\n}\n\nvar invariants = []MigrationInvariant{\n    {\n        Name: \"required_config_present\",\n        Description: \"Required config keys must exist\",\n        Check: checkRequiredConfig, // Would have caught GH #201\n    },\n    {\n        Name: \"foreign_keys_valid\",\n        Description: \"No orphaned dependencies or labels\",\n        Check: checkForeignKeys,\n    },\n    {\n        Name: \"issue_count_stable\",\n        Description: \"Issue count should not decrease unexpectedly\",\n        Check: checkIssueCount,\n    },\n}\n\nfunc checkRequiredConfig(db *sql.DB, snapshot *Snapshot) error {\n    required := []string{\"issue_prefix\", \"schema_version\"}\n    for _, key := range required {\n        var value string\n        err := db.QueryRow(\"SELECT value FROM config WHERE key = ?\", key).Scan(\u0026value)\n        if err != nil || value == \"\" {\n            return fmt.Errorf(\"required config key missing: %s\", key)\n        }\n    }\n    return nil\n}\n```\n\n## Phase 2: Dry-Run \u0026 Inspection Tools\n\nAdd `bd migrate --dry-run --json`:\n\n```json\n{\n  \"pending_migrations\": [\n    {\"name\": \"dirty_issues_table\", \"description\": \"Adds dirty_issues table\"},\n    {\"name\": \"content_hash_column\", \"description\": \"Adds content_hash for collision resolution\"}\n  ],\n  \"current_state\": {\n    \"schema_version\": \"0.9.9\",\n    \"issue_count\": 247,\n    \"config\": {\"schema_version\": \"0.9.9\"},\n    \"missing_config\": [\"issue_prefix\"]\n  },\n  \"warnings\": [\n    \"issue_prefix config not set - may break commands after migration\"\n  ],\n  \"invariants_to_check\": [\n    \"required_config_present\",\n    \"foreign_keys_valid\",\n    \"issue_count_stable\"\n  ]\n}\n```\n\nAdd `bd info --schema --json`:\n\n```json\n{\n  \"tables\": [\"issues\", \"dependencies\", \"labels\", \"config\"],\n  \"schema_version\": \"0.9.9\",\n  \"config\": {},\n  \"sample_issue_ids\": [\"mcp-1\", \"mcp-2\"],\n  \"detected_prefix\": \"mcp\"\n}\n```\n\n## Phase 3: Pre/Post Snapshots with Rollback\n\nUpdate `RunMigrations()`:\n\n```go\nfunc RunMigrations(db *sql.DB) error {\n    // Capture pre-migration snapshot\n    snapshot := captureSnapshot(db)\n    \n    // Run migrations in transaction\n    tx, err := db.Begin()\n    if err != nil {\n        return err\n    }\n    defer tx.Rollback()\n    \n    for _, migration := range migrations {\n        if err := migration.Func(tx); err != nil {\n            return fmt.Errorf(\"migration %s failed: %w\", migration.Name, err)\n        }\n    }\n    \n    // Verify invariants before commit\n    if err := verifyInvariants(tx, snapshot); err != nil {\n        return fmt.Errorf(\"post-migration validation failed (rolled back): %w\", err)\n    }\n    \n    return tx.Commit()\n}\n```\n\n## Phase 4: MCP Tools for Agent Supervision\n\nAdd to beads-mcp:\n\n```python\n@server.tool()\nasync def inspect_migration(workspace_root: str) -\u003e dict:\n    \"\"\"Get migration plan and current state for agent analysis.\n    \n    Agent should:\n    1. Review pending migrations\n    2. Check for warnings (missing config, etc.)\n    3. Verify invariants will pass\n    4. Decide whether to run bd migrate\n    \"\"\"\n    result = run_bd([\"migrate\", \"--dry-run\", \"--json\"], workspace_root)\n    return json.loads(result.stdout)\n\n@server.tool()  \nasync def get_schema_info(workspace_root: str) -\u003e dict:\n    \"\"\"Get current database schema for migration analysis.\"\"\"\n    result = run_bd([\"info\", \"--schema\", \"--json\"], workspace_root)\n    return json.loads(result.stdout)\n```\n\n## Agent Workflow Example\n\n```python\n# Agent detects user wants to migrate\nmigration_plan = inspect_migration(\"/path/to/workspace\")\n\n# Agent analyzes (using its own reasoning, no API calls from beads)\nif \"issue_prefix\" in migration_plan[\"missing_config\"]:\n    schema = get_schema_info(\"/path/to/workspace\")\n    detected_prefix = schema[\"detected_prefix\"]\n    \n    # Agent fixes issue before migration\n    run_bd([\"config\", \"set\", \"issue_prefix\", detected_prefix])\n    \n# Now safe to migrate\nrun_bd([\"migrate\"])\n```\n\n## What Beads Provides\n\n✅ Deterministic validation (invariants)\n✅ Structured inspection (--dry-run, --explain)\n✅ Rollback on invariant failure\n✅ JSON output for agent parsing\n\n## What Beads Does NOT Do\n\n❌ No AI API calls\n❌ No external model access\n❌ No agent invocation\n\nAgents supervise migrations using their own reasoning and the inspection tools beads provides.","acceptance_criteria":"Phase 1: Migration invariants implemented and tested, checked after every migration, clear error messages when invariants fail.\n\nPhase 2: Snapshot capture before migrations, comparison after, rollback on verification failure.\n\nPhase 3 (stretch): AI validation optional flag implemented, AI can analyze migration code and generate custom validation queries.\n\nPhase 4 (stretch): Migration test fixtures created, all fixtures pass migrations, CI runs migration tests.","notes":"## Progress\n\n### ✅ Phase 1: Migration Invariants (COMPLETED)\n\n**Implemented:**\n- Created internal/storage/sqlite/migration_invariants.go with 3 invariants\n- Updated RunMigrations() to verify invariants after migrations\n- All tests pass ✓\n\n### ✅ Phase 2: Inspection Tools (COMPLETED \u0026 PUSHED)\n\n**Commit:** 1abe4e7 - \"Add migration inspection tools for AI agents (bd-627d Phase 2)\"\n\n**Implemented:**\n1. ✅ bd migrate --inspect --json - Shows migration plan\n2. ✅ bd info --schema --json - Returns schema details\n3. ✅ Migration warnings system\n4. ✅ Documentation updated in AGENTS.md\n5. ✅ All tests pass\n\n### ✅ Phase 3: MCP Tools (COMPLETED \u0026 PUSHED)\n\n**Commit:** 2493693 - \"Add MCP tools for migration inspection (bd-627d Phase 3)\"\n\n**Implemented:**\n1. ✅ inspect_migration(workspace_root) tool in beads-mcp\n2. ✅ get_schema_info(workspace_root) tool in beads-mcp\n3. ✅ Abstract methods in BdClientBase\n4. ✅ CLI client implementations\n5. ✅ All tests pass\n\n**All phases complete!** Migration inspection fully integrated into MCP server.","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-11-02T12:57:10.722048-08:00","updated_at":"2025-11-02T14:31:25.095296-08:00","closed_at":"2025-11-02T14:31:25.095308-08:00","source_repo":"."}
 {"id":"bd-62a0","content_hash":"b8b2a58a86211a19aed9d21ec5215b4f14ef341ee95d4ed845e1412840d00fd7","title":"Create WASM build infrastructure (Makefile, scripts)","description":"Set up build tooling for WASM compilation:\n- Add GOOS=js GOARCH=wasm build target\n- Copy wasm_exec.js from Go distribution\n- Create wrapper script for Node.js execution\n- Add build task to Makefile or build script","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-02T21:58:07.286826-08:00","updated_at":"2025-11-02T22:23:49.376789-08:00","closed_at":"2025-11-02T22:23:49.376789-08:00","source_repo":".","dependencies":[{"issue_id":"bd-62a0","depends_on_id":"bd-44d0","type":"parent-child","created_at":"2025-11-02T22:23:49.423064-08:00","created_by":"stevey"}]}
 {"id":"bd-63e9","content_hash":"7c709804b6d15ce63897344b0674dfae6a4fe97e3ae2768585e2a3407484bad0","title":"Fix Nix flake build test failures","description":"Nix build is failing during test phase with same test errors as Windows.\n\n**Error:**\n```\nerror: Cannot build '/nix/store/rgyi1j44dm6ylrzlg2h3z97axmfq9hzr-beads-0.9.9.drv'.\nReason: builder failed with exit code 1.\nFAIL github.com/steveyegge/beads/cmd/bd 16.141s\n```\n\nThis may be related to test environment setup or the same issues affecting Windows tests.","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-11-02T09:29:37.2851-08:00","updated_at":"2025-11-04T11:10:23.531386-08:00","closed_at":"2025-11-04T11:10:23.531389-08:00","source_repo":".","dependencies":[{"issue_id":"bd-63e9","depends_on_id":"bd-1231","type":"blocks","created_at":"2025-11-02T09:29:37.28618-08:00","created_by":"stevey"}]}
@@ -127,10 +127,9 @@
 {"id":"bd-7324","content_hash":"639f5eef2922178daae7416831b850bf58ebeb39b8b91e7124387e0b6dfea33c","title":"Add is_tombstone flag to schema","description":"Optionally add is_tombstone boolean field to issues table. Marks resurrected parents that were deleted. Allows distinguishing tombstones from normal deleted issues. Update schema.go and create migration.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-04T12:31:59.745076-08:00","updated_at":"2025-11-05T00:44:27.947578-08:00","closed_at":"2025-11-05T00:44:27.947584-08:00","source_repo":"."}
 {"id":"bd-736d","content_hash":"4743b1f41ff07fee3daa63240f0d5f7ac3f876e928b22c4ce0bee2cdf544e53a","title":"Refactor path canonicalization into helper function","description":"The path canonicalization logic (filepath.Abs + EvalSymlinks) is duplicated in 3 places:\n- beads.go:131-137 (BEADS_DIR handling)\n- cmd/bd/main.go:446-451 (--no-db cleanup)\n- cmd/bd/nodb.go:26-31 (--no-db initialization)\n\nRefactoring suggestion:\nExtract to a helper function like:\n  func canonicalizePath(path string) string\n\nThis would:\n- Reduce code duplication\n- Make the logic easier to maintain\n- Ensure consistent behavior across all path handling\n\nRelated to bd-e16b implementation.","status":"open","priority":3,"issue_type":"chore","created_at":"2025-11-02T18:33:47.727443-08:00","updated_at":"2025-11-02T18:33:47.727443-08:00","source_repo":"."}
 {"id":"bd-73iz","content_hash":"6003ff8e78d951d6a708f6aac6bcf841637977cab4f4a93a80b3dc2bab3287cb","title":"Test issue 1","description":"","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-07T19:04:17.430269-08:00","updated_at":"2025-11-07T22:07:17.344468-08:00","closed_at":"2025-11-07T21:55:09.427697-08:00","source_repo":"."}
-{"id":"bd-73n8","content_hash":"d8808071441c4faaa429c2100b421348df1750118ac618c6d68437064eb060c5","title":"Blocking issue","description":"","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-07T19:06:46.156536-08:00","updated_at":"2025-11-07T19:06:46.156536-08:00","source_repo":"."}
+{"id":"bd-73n8","content_hash":"f42a4eaf47ce49450fb5e2cce3ec53bff3c38ec7a0585ea06b4b31d7dfe05393","title":"Blocking issue","description":"","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-07T19:06:46.156536-08:00","updated_at":"2025-11-08T00:20:30.481078-08:00","closed_at":"2025-11-08T00:20:30.481078-08:00","source_repo":"."}
 {"id":"bd-74ee","content_hash":"476deaacd64c91c96e5c9aca9ba0640dcf0f3854f9f11bbaa25a8ae80af3adf3","title":"Frontend task","description":"","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-03T19:11:59.358631-08:00","updated_at":"2025-11-05T00:25:06.457813-08:00","closed_at":"2025-11-05T00:25:06.457813-08:00","source_repo":".","labels":["frontend","week1"]}
-{"id":"bd-74q9","content_hash":"426f1e44ca47486e2fa5b97832a635612ac9fcb98064f00559c8833480f11bd6","title":"Issue to reopen with reason","description":"","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-07T19:04:20.855594-08:00","updated_at":"2025-11-07T23:21:44.922666-08:00","closed_at":"2025-11-07T23:21:44.922669-08:00","source_repo":"."}
-{"id":"bd-76cu","content_hash":"2236f911e6f321a74aa61bdf702d24949e44a68ed511d12dd011aa4103c89230","title":"Issue 2","description":"","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-07T19:04:21.562329-08:00","updated_at":"2025-11-07T19:04:21.562329-08:00","source_repo":"."}
+{"id":"bd-76cu","content_hash":"e51879f43e91439ca39c20e52a66874f482445009a713639fe3298cb497d4016","title":"Issue 2","description":"","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-07T19:04:21.562329-08:00","updated_at":"2025-11-08T00:20:30.366892-08:00","closed_at":"2025-11-08T00:20:30.366892-08:00","source_repo":"."}
 {"id":"bd-78w","content_hash":"dd79ef79bf68b3a87f3a5b8d50fdfba9d6c6f7e6d728713e37dd34cf9fff835e","title":"Test Epic 2","description":"## Overview\n\n[Describe the high-level goal and scope of this epic]\n\n## Success Criteria\n\n- [ ] Criteria 1\n- [ ] Criteria 2\n- [ ] Criteria 3\n\n## Background\n\n[Provide context and motivation]\n\n## Scope\n\n**In Scope:**\n- Item 1\n- Item 2\n\n**Out of Scope:**\n- Item 1\n- Item 2\n","design":"## Architecture\n\n[Describe the overall architecture and approach]\n\n## Components\n\n- Component 1: [description]\n- Component 2: [description]\n\n## Dependencies\n\n[List external dependencies or constraints]\n","acceptance_criteria":"- [ ] All child issues are completed\n- [ ] Integration tests pass\n- [ ] Documentation is updated\n- [ ] Code review completed\n","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-11-03T20:15:03.878216-08:00","updated_at":"2025-11-05T00:25:06.566242-08:00","closed_at":"2025-11-05T00:25:06.566242-08:00","source_repo":".","labels":["epic"]}
 {"id":"bd-7a00c94e","content_hash":"5ea01765a9fdf5c4c75f485b1db26c942eaaa762f1cdcb497306a78c65132721","title":"Rapid 2","description":"","status":"closed","priority":3,"issue_type":"task","created_at":"2025-10-29T19:11:57.430725-07:00","updated_at":"2025-11-07T23:21:44.923877-08:00","closed_at":"2025-11-07T23:18:52.352188-08:00","source_repo":"."}
 {"id":"bd-7a2b58fc","content_hash":"02b9e5c0f7a58576876637f09cf67a97d180686a216d53b15351ca2c099c8e5f","title":"Implement clone-scoped ID allocation to prevent N-way collisions","description":"## Problem\nCurrent ID allocation uses per-clone atomic counters (issue_counters table) that sync based on local database state. In N-way collision scenarios:\n- Clone B sees {test-1} locally, allocates test-2\n- Clone D sees {test-1, test-2, test-3} locally, allocates test-4\n- When same content gets assigned test-2 and test-4, convergence fails\n\nRoot cause: Each clone independently allocates IDs without global coordination, leading to overlapping assignments for the same content.\n\n## Solution\nAdd clone UUID to ID allocation to make every ID globally unique:\n\n**Current format:** `test-1`, `test-2`, `test-3`\n**New format:** `test-1-a7b3`, `test-2-a7b3`, `test-3-c4d9`\n\nWhere suffix is first 4 chars of clone UUID.\n\n## Implementation\n\n### 1. Add clone_identity table\n```sql\nCREATE TABLE clone_identity (\n    clone_uuid TEXT PRIMARY KEY,\n    created_at DATETIME DEFAULT CURRENT_TIMESTAMP\n);\n```\n\n### 2. Modify getNextIDForPrefix()\n```go\nfunc (s *SQLiteStorage) getNextIDForPrefix(ctx context.Context, prefix string) (string, error) {\n    cloneUUID := s.getOrCreateCloneUUID(ctx)\n    shortUUID := cloneUUID[:4]\n    \n    nextNum := s.getNextCounterForPrefix(ctx, prefix)\n    return fmt.Sprintf(\"%s-%d-%s\", prefix, nextNum, shortUUID), nil\n}\n```\n\n### 3. Update ID parsing logic\nAll places that parse IDs (utils.ExtractIssueNumber, etc.) need to handle new format.\n\n### 4. Migration strategy\n- Existing IDs remain unchanged (no suffix)\n- New IDs get clone suffix automatically\n- Display layer can hide suffix in UI: `bd-cb64c226.3-a7b3` → `#42`\n\n## Benefits\n- **Zero collision risk**: Same content in different clones gets different IDs\n- **Maintains readability**: Still sequential numbering within clone\n- **No coordination needed**: Works offline, no central authority\n- **Scales to 100+ clones**: 4-char hex = 65,536 unique clones\n\n## Concerns\n- ID format change may break existing integrations\n- Need migration path for existing databases\n- Display logic needs update to hide/show suffixes appropriately\n\n## Success Criteria\n- 10+ clone collision test passes without failures\n- Existing issues continue to work (backward compatibility)\n- Documentation updated with new ID format\n- Migration guide for v1.x → v2.x\n\n## Timeline\nMedium-term (v1.1-v1.2), 2-3 weeks implementation\n\n## References\n- Related to bd-0dcea000 (immediate fix)\n- See beads_nway_test.go for failing N-way tests","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-10-29T20:02:47.952447-07:00","updated_at":"2025-11-06T19:36:13.971527-08:00","closed_at":"2025-11-06T19:27:29.41629-08:00","source_repo":"."}
@@ -140,7 +139,7 @@
 {"id":"bd-7e7ddffa.1","content_hash":"3ab290915c117ec902bda1761e8c27850512f3fd4b494a93546c44b397d573a3","title":"bd resolve-conflicts - Git merge conflict resolver","description":"Automatically resolve JSONL merge conflicts.\n\nModes:\n- Mechanical: ID remapping (no AI)\n- AI-assisted: Smart merge/keep decisions\n- Interactive: Review each conflict\n\nHandles \u003c\u003c\u003c\u003c\u003c\u003c\u003c conflict markers in .beads/beads.jsonl\n\nFiles: cmd/bd/resolve_conflicts.go (new)","status":"closed","priority":1,"issue_type":"task","created_at":"2025-10-28T14:48:30.083642-07:00","updated_at":"2025-11-02T16:40:46.620251-08:00","closed_at":"2025-11-02T16:40:46.620251-08:00","source_repo":".","dependencies":[{"issue_id":"bd-7e7ddffa.1","depends_on_id":"bd-7e7ddffa","type":"parent-child","created_at":"2025-10-29T19:58:28.847736-07:00","created_by":"stevey"}]}
 {"id":"bd-7fe8","content_hash":"106aa3a1717d3c2a6ff518a8881976fd70911b006714b04f47327959d7ca1444","title":"Fix linting error in migrate.go","description":"Linter reports error:\n```\ncmd/bd/migrate.go:647:37: cleanupWALFiles - result 0 (error) is always nil (unparam)\n```\n\nThe `cleanupWALFiles` function always returns nil, so the error return type should be removed or the function should actually return errors when appropriate.","status":"closed","priority":2,"issue_type":"chore","created_at":"2025-11-02T09:29:37.279747-08:00","updated_at":"2025-11-02T09:46:52.18793-08:00","closed_at":"2025-11-02T09:46:52.18793-08:00","source_repo":".","dependencies":[{"issue_id":"bd-7fe8","depends_on_id":"bd-1231","type":"blocks","created_at":"2025-11-02T09:29:37.280881-08:00","created_by":"stevey"}]}
 {"id":"bd-7kua","content_hash":"3eced3edc7bf75e6a01bac566adf0d0f020dcfd8220fe56baf26419e0ffa6c4b","title":"Reduce sync rounds in multiclone tests","description":"Analyze and reduce the number of sync rounds in hash multiclone tests.\n\nCurrent state:\n- TestHashIDs_MultiCloneConverge: 1 round of syncs across 3 clones\n- TestHashIDs_IdenticalContentDedup: 2 rounds across 2 clones\n\nInvestigation needed:\n- Profile to see how much time each sync takes\n- Determine minimum rounds needed for convergence\n- Consider making rounds configurable via env var\n\nFile: beads_hash_multiclone_test.go:70, :132","status":"closed","priority":2,"issue_type":"task","created_at":"2025-11-04T01:24:18.405038-08:00","updated_at":"2025-11-04T10:26:34.449434-08:00","closed_at":"2025-11-04T10:26:34.449434-08:00","source_repo":".","dependencies":[{"issue_id":"bd-7kua","depends_on_id":"bd-l5gq","type":"blocks","created_at":"2025-11-04T01:24:18.405883-08:00","created_by":"daemon"}]}
-{"id":"bd-7so1","content_hash":"65e5dcb12407f83aad0c37c06127fcf76cf00bf581adab726b221da75c6c7f74","title":"Issue 1 to reopen","description":"","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-07T19:04:20.12433-08:00","updated_at":"2025-11-07T19:04:20.224399-08:00","source_repo":"."}
+{"id":"bd-7so1","content_hash":"2f63a89a752e2cf59ebdbd58b2a5aca9f6b7bac5c4e5f05656c7bbe2485f92e2","title":"Issue 1 to reopen","description":"","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-07T19:04:20.12433-08:00","updated_at":"2025-11-08T00:20:30.159616-08:00","closed_at":"2025-11-08T00:20:30.159616-08:00","source_repo":"."}
 {"id":"bd-8072","content_hash":"32bd0e33433bbf535cb56eb47828ac80ebecc57512e9039420a39cd2342790d2","title":"Add import.orphan_handling config option","description":"Add configuration option to control orphan handling behavior: 'strict' (fail on missing parent, current behavior), 'resurrect' (auto-resurrect from JSONL, recommended default), 'skip' (skip orphaned issues with warning), 'allow' (import orphans without validation). Update CONFIG.md documentation.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-04T12:32:08.569239-08:00","updated_at":"2025-11-05T00:44:27.948157-08:00","closed_at":"2025-11-05T00:44:27.94816-08:00","source_repo":"."}
 {"id":"bd-812a","content_hash":"0d802dec82dff53e88e68bb4f1fef75754165a590996ff8b1578ff93e781622d","title":"Add unit tests for import ordering","description":"Test topological sort: import [child, parent] should succeed, import [parent.1.2, parent, parent.1] should sort correctly. Verify depth-based batching works. Test max depth limits.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-04T12:32:21.278448-08:00","updated_at":"2025-11-05T00:08:42.812949-08:00","closed_at":"2025-11-05T00:08:42.812952-08:00","source_repo":"."}
 {"id":"bd-824","content_hash":"685ecf3e0547bc2b108df592408e8b77d5e436543d4e5a1a3f2c767f1758ae53","title":"Add migration guide for library consumers","description":"The contributor-workflow-analysis.md has excellent migration examples for CLI users (lines 508-549) but lacks examples for library consumers like VC that use beadsLib in Go/TypeScript code.\n\nLibrary consumers need to know:\n- Whether their existing code continues to work unchanged (backward compatibility)\n- How config.toml is automatically read (transparent hydration)\n- When and how to use explicit multi-repo configuration\n- What happens if config.toml doesn't exist (defaults)\n\nExample needed:\n```go\n// Before (v0.17.3)\nstore, err := beadsLib.NewSQLiteStorage(\".beads/vc.db\")\n\n// After (v0.18.0 with multi-repo) - still works!\nstore, err := beadsLib.NewSQLiteStorage(\".beads/vc.db\")\n// Automatically reads .beads/config.toml if present\n\n// Explicit multi-repo (if needed)\ncfg := beadsLib.Config{\n    Primary: \".beads/vc.db\",\n    Additional: []string{\"~/.beads-planning\"},\n}\nstore, err := beadsLib.NewStorageWithConfig(cfg)\n```","acceptance_criteria":"- Section added to contributor-workflow-analysis.md for library consumers\n- Code examples showing backward compatibility\n- Code examples showing explicit multi-repo configuration\n- Guidance on when library consumers should use multi-repo vs single-repo","status":"closed","priority":2,"issue_type":"task","created_at":"2025-11-03T20:24:17.748337-08:00","updated_at":"2025-11-05T14:15:44.154675-08:00","closed_at":"2025-11-05T14:15:44.154675-08:00","source_repo":"."}
@@ -150,7 +149,7 @@
 {"id":"bd-85487065","content_hash":"637cbd56af122b175ff060b4df050871fe86124c5d883ba7f8a17f2f95479613","title":"Add tests for internal/autoimport package","description":"Currently 0.0% coverage. Need tests for auto-import functionality that detects and imports updated JSONL files.","status":"open","priority":2,"issue_type":"task","created_at":"2025-10-29T14:06:18.154805-07:00","updated_at":"2025-10-30T17:12:58.182987-07:00","source_repo":"."}
 {"id":"bd-85d1","content_hash":"a82c0064b840eacb4896f68e73650a3e99aaeaffbb2a7269a857b6c4245b5572","title":"Add integration tests for multi-repo sync","description":"Test: Clone A deletes issue, Clone B imports Clone A's JSONL. Verify Clone B handles deletion gracefully with resurrection. Test concurrent imports with same orphans (should be idempotent). Test round-trip fidelity (export→delete parent→import→verify structure).","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-04T12:32:21.410318-08:00","updated_at":"2025-11-05T00:44:27.948465-08:00","closed_at":"2025-11-05T00:44:27.948467-08:00","source_repo":"."}
 {"id":"bd-879d","content_hash":"9716c230d9b2793bd1e51d9e3c380c06caf7b3e9a0dd20253764af19e3de7ac8","title":"Test issue 1","description":"","status":"closed","priority":2,"issue_type":"task","created_at":"2025-11-02T09:44:12.538697729Z","updated_at":"2025-11-02T09:45:20.76214671Z","closed_at":"2025-11-02T09:45:20.76214671Z","source_repo":".","dependencies":[{"issue_id":"bd-879d","depends_on_id":"bd-d3e5","type":"discovered-from","created_at":"2025-11-02T09:44:22.103468321Z","created_by":"mrdavidlaing"}]}
-{"id":"bd-87a0","content_hash":"b6c322852ff360ade9f0d46bb2af29a7cf3d3acc8b7469dcbb5d98bf48050240","title":"Publish @beads/bd package to npm registry","description":"Publish the npm package to the public npm registry:\n\n## Prerequisites\n- npm account created\n- Organization @beads created (or use different namespace)\n- npm login completed locally\n- Package tested locally (bd-f282 completed)\n\n## Publishing steps\n1. Verify package.json version matches current bd version\n2. Run npm pack and inspect tarball contents\n3. Test installation from tarball one more time\n4. Run npm publish --access public\n5. Verify package appears on https://www.npmjs.com/package/@beads/bd\n6. Test installation from registry: npm install -g @beads/bd\n\n## Post-publish\n- Add npm badge to README.md\n- Update CHANGELOG.md with npm package release\n- Announce in release notes\n\n## Note\n- May need to choose different name if @beads namespace unavailable\n- Alternative: beads-cli, bd-cli, or unscoped beads-issue-tracker","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-02T23:40:25.263569-08:00","updated_at":"2025-11-03T10:39:41.772338-08:00","closed_at":"2025-11-03T10:39:41.772338-08:00","source_repo":".","dependencies":[{"issue_id":"bd-87a0","depends_on_id":"bd-febc","type":"parent-child","created_at":"2025-11-02T23:40:33.014043-08:00","created_by":"daemon"}]}
+{"id":"bd-87a0","content_hash":"b6c322852ff360ade9f0d46bb2af29a7cf3d3acc8b7469dcbb5d98bf48050240","title":"Publish @beads/bd package to npm registry","description":"Publish the npm package to the public npm registry:\n\n## Prerequisites\n- npm account created\n- Organization @beads created (or use different namespace)\n- npm login completed locally\n- Package tested locally (bd-f282 completed)\n\n## Publishing steps\n1. Verify package.json version matches current bd version\n2. Run npm pack and inspect tarball contents\n3. Test installation from tarball one more time\n4. Run npm publish --access public\n5. Verify package appears on https://www.npmjs.com/package/@beads/bd\n6. Test installation from registry: npm install -g @beads/bd\n\n## Post-publish\n- Add npm badge to README.md\n- Update CHANGELOG.md with npm package release\n- Announce in release notes\n\n## Note\n- May need to choose different name if @beads namespace unavailable\n- Alternative: beads-cli, bd-cli, or unscoped beads-issue-tracker","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-02T23:40:25.263569-08:00","updated_at":"2025-11-03T10:39:41.772338-08:00","closed_at":"2025-11-03T10:39:41.772338-08:00","source_repo":".","dependencies":[{"issue_id":"bd-87a0","depends_on_id":"bd-febc","type":"parent-child","created_at":"2025-11-02T23:40:33.014043-08:00","created_by":"daemon"}],"comments":[{"id":10,"issue_id":"bd-87a0","author":"stevey","text":"Package is ready to publish. All code complete and tested locally. Next steps: 1) npm login, 2) create @beads org if needed, 3) npm publish --access public. See npm-package/PUBLISHING.md for complete instructions.","created_at":"2025-11-05T08:44:27Z"}]}
 {"id":"bd-8931","content_hash":"409c16d9e6c83c2bf6cccfa6ee6cb18e1e1eee032b522fb99500bb40f2a05649","title":"Daemon gets stuck when auto-import blocked by git conflicts","description":"CRITICAL: The daemon enters a corrupt state that breaks RPC commands when auto-import is triggered but git pull fails due to uncommitted changes.\n\nImpact: This is a data integrity and usability issue that could cause users to lose trust in Beads. The daemon silently fails for certain commands while appearing healthy.\n\nReproduction:\n1. Make local changes to issues (creates uncommitted .beads/beads.jsonl)\n2. Remote has updates (JSONL newer, triggers auto-import)\n3. Daemon tries to pull but fails: 'cannot pull with rebase: You have unstaged changes'\n4. Daemon enters bad state - 'bd show' and other commands return EOF\n5. 'bd list' still works, daemon process is running, no errors logged\n\nTechnical details:\n- Auto-import check runs in handleRequest() before processing RPC commands\n- When import is blocked, it appears to corrupt daemon state\n- Likely: deadlock, unclosed transaction, or storage handle corruption\n- Panic recovery (server_lifecycle_conn.go:183) didn't catch anything - not a panic\n\nRequired fix:\n- Auto-import must not block RPC command execution\n- Handle git pull failures gracefully without corrupting state\n- Consider: skip auto-import if git is dirty, queue import for later, or use separate goroutine\n- Add timeout/circuit breaker for import operations\n- Log clear warnings when auto-import is skipped\n\nWithout this fix, users in collaborative environments will frequently encounter mysterious EOF errors that require daemon restarts.","design":"Options to fix:\n\n1. Skip auto-import when git is dirty (safest, simplest)\n   - Check git status before pull\n   - Log warning and continue without import\n   - User must manually import after cleaning git state\n\n2. Async import with timeout (better UX)\n   - Run auto-import in background goroutine\n   - Don't block RPC command execution\n   - Timeout after 5s, log error if stuck\n   - Use sync.Once or similar to prevent concurrent imports\n\n3. Transactional import with rollback\n   - Wrap import in database transaction\n   - Rollback if git operations fail\n   - Ensure storage is never left in bad state\n\nRecommended: Combine #1 and #2\n- Check git status first, skip if dirty\n- If clean, do async import with timeout\n- Add metrics to track import success/failure rates","status":"closed","priority":0,"issue_type":"bug","created_at":"2025-11-02T17:15:25.181425-08:00","updated_at":"2025-11-03T12:08:12.949061-08:00","closed_at":"2025-11-03T12:08:12.949064-08:00","source_repo":".","dependencies":[{"issue_id":"bd-8931","depends_on_id":"bd-1048","type":"blocks","created_at":"2025-11-02T17:15:25.181857-08:00","created_by":"stevey"}]}
 {"id":"bd-897a","content_hash":"ae488407bf5e71242535f4c35b59b0981d2b8b338d1701f19acba2c8e93049f0","title":"Add UNIQUE constraint on external_ref column","description":"The external_ref column should have a UNIQUE constraint to prevent multiple issues from having the same external reference. This ensures data integrity when syncing from external systems (Jira, GitHub, Linear).\n\nCurrent behavior:\n- Multiple issues can have the same external_ref\n- GetIssueByExternalRef returns first match (non-deterministic with duplicates)\n\nProposed solution:\n- Add UNIQUE constraint to external_ref column\n- Add migration to check for and resolve existing duplicates\n- Update tests to verify constraint enforcement\n\nRelated: bd-1022","status":"closed","priority":2,"issue_type":"task","created_at":"2025-11-02T15:31:54.718005-08:00","updated_at":"2025-11-02T16:01:45.742666-08:00","closed_at":"2025-11-02T16:01:45.742666-08:00","source_repo":"."}
 {"id":"bd-89e2","content_hash":"c7da1d6c0d28b2fe9a5a1166a7b6712a870b5271fdf21558e4ef639e2675f92f","title":"Daemon race condition: stale export overwrites recent DB changes","description":"**Symptom:**\nMerged bd-fc2d into bd-fb05 in ~/src/beads (commit ce4d756), pushed to remote. The ~/src/fred/beads daemon then exported its stale DB state and committed (8cc1bb4), reverting bd-fc2d back to \"open\" status.\n\n**Timeline:**\n1. 21:45:12 - Merge committed from ~/src/beads (ce4d756): bd-fc2d closed\n2. 21:49:42 - Daemon in ~/src/fred/beads exported stale state (8cc1bb4): bd-fc2d open again\n\n**Root cause:**\nThe fred/beads daemon had a stale database (bd-fc2d still open) and didn't auto-import the newer JSONL before exporting. When it exported, it overwrote the merge with its stale state.\n\n**Expected behavior:**\nDaemon should detect that JSONL is newer than its last export and import before exporting.\n\n**Actual behavior:**\nDaemon exported stale DB state, creating a conflicting commit that reverted upstream changes.\n\n**Impact:**\nMulti-workspace setups with daemons can silently lose changes if one daemon has stale state and exports.","status":"closed","priority":0,"issue_type":"bug","created_at":"2025-11-01T21:53:07.930819-07:00","updated_at":"2025-11-01T22:01:25.54126-07:00","closed_at":"2025-11-01T22:01:25.54126-07:00","source_repo":"."}
@@ -163,7 +162,7 @@
 {"id":"bd-8ift","content_hash":"6799411d3e9bf01a850b91c74e1e1c84affcc4a569ade2c3f56e39ba2fbeb142","title":"Debug test","description":"","status":"closed","priority":3,"issue_type":"task","created_at":"2025-11-08T00:04:35.254385-08:00","updated_at":"2025-11-08T00:06:46.179396-08:00","closed_at":"2025-11-08T00:06:46.179396-08:00","source_repo":"."}
 {"id":"bd-8ph6","content_hash":"278b6e7ebe89d87de0a48bb3c3a2bd2a7813f0552f8ad45cc1901bd284ce8be3","title":"Support Ubuntu 20.04 LTS (glibc compatibility issue)","description":"Starting at v0.22, precompiled binaries require GLIBC 2.32+ which is not available on Ubuntu 20.04 LTS (Focal Fossa). Ubuntu 20.04 has GLIBC 2.31.\n\nError:\n```\nbd: /lib/x86_64-linux-gnu/libc.so.6: version `GLIBC_2.34' not found (required by bd)\nbd: /lib/x86_64-linux-gnu/libc.so.6: version `GLIBC_2.32' not found (required by bd)\n```\n\nCurrent workarounds:\n1. Upgrade to Ubuntu 22.04+\n2. Build from source: `go build -o bd ./cmd/bd/`\n\nRoot cause: Go 1.24+ runtime requires newer glibc. CGO is already disabled in .goreleaser.yml.\n\nPossible solutions:\n- Pin Go version to 1.21 or 1.22 for releases\n- Use Docker/cross-compile with older build environment\n- Provide separate build for older distros\n- Document minimum requirements clearly","notes":"Decision: Document minimum requirements in README instead of pinning Go version.\n\nRationale:\n- Ubuntu 20.04 LTS standard support ended April 2025 (already EOL)\n- Pinning Go prevents security fixes, performance improvements, and new features\n- Users on EOL distros can upgrade OS or build from source\n- Added Requirements section to README with clear glibc 2.32+ requirement","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-11-07T14:25:47.055357-08:00","updated_at":"2025-11-07T14:30:15.755733-08:00","closed_at":"2025-11-07T14:30:15.755733-08:00","source_repo":"."}
 {"id":"bd-8rd","content_hash":"e5845f6bda21414b3715f9589c76f8a02594f4cb8691939ced6765329346e411","title":"Migration and onboarding for multi-repo","description":"Create migration tools, wizards, and documentation to help users adopt multi-repo workflow, with special focus on OSS contributor onboarding and team adoption scenarios.","design":"Components:\n- Migration guide documentation\n- bd migrate command to move issues between repos\n- bd init --contributor wizard for OSS setup\n- bd init --team wizard for team setup\n- Auto-detect scenarios and prompt users\n- Examples for common workflows (OSS, multi-phase, personas)\n\nScenarios:\n1. OSS contributor (fork workflow)\n2. Team member (branch workflow)\n3. Multi-phase development\n4. Multiple personas (architect/implementer)","acceptance_criteria":"1. Migration guide covers all scenarios\n2. bd migrate moves issues with filtering\n3. Init wizards guide common setups\n4. Examples demonstrate key workflows\n5. Auto-detection prompts users when appropriate\n6. Docs updated with multi-repo patterns\n7. Backward compatibility clearly documented","status":"closed","priority":2,"issue_type":"epic","created_at":"2025-11-04T11:22:13.491033-08:00","updated_at":"2025-11-07T16:08:24.951261-08:00","closed_at":"2025-11-07T16:03:09.75064-08:00","source_repo":".","dependencies":[{"issue_id":"bd-8rd","depends_on_id":"bd-4ms","type":"parent-child","created_at":"2025-11-04T11:22:21.858002-08:00","created_by":"daemon"}]}
-{"id":"bd-8v37","content_hash":"74aa57ab28e70fb995a1e154379a17a211bc10ffae8e5901213661b154941981","title":"BG's issue to reopen","description":"","status":"open","priority":1,"issue_type":"bug","created_at":"2025-11-07T19:04:19.450509-08:00","updated_at":"2025-11-07T19:04:19.49687-08:00","source_repo":"."}
+{"id":"bd-8v37","content_hash":"4fc8548205ad0fa0e5c45dfd4945fcf74e3e51dbf668bbf0a7602c56cf17da02","title":"BG's issue to reopen","description":"","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-07T19:04:19.450509-08:00","updated_at":"2025-11-08T00:20:30.05489-08:00","closed_at":"2025-11-08T00:20:30.05489-08:00","source_repo":"."}
 {"id":"bd-8zf2","content_hash":"206a043c20b3ec3a6fd3ef1e4d402d9d5df2e011e0f14c6c02815e2916f2e44a","title":"MCP server loses workspace context after Amp restart - causes silent failures","description":"**CRITICAL BUG**: The beads MCP server loses workspace context when Amp restarts, leading to silent failures and potential data corruption.\n\n## Reproduction\n1. Start Amp with beads MCP server configured\n2. Call `mcp__beads__set_context(workspace_root=\"/path/to/project\")`\n3. Use MCP tools successfully (e.g., `mcp__beads__show`, `mcp__beads__list`)\n4. Restart Amp (new thread/session)\n5. Try to use MCP tools without calling `set_context` again\n6. **Result**: \"Not connected\" or \"No workspace set\" errors\n\n## Impact\n- Amp agents silently fail when trying to read/update beads issues\n- May attempt to create duplicate issues because they can't see existing ones\n- Potential for data corruption if operating on wrong database\n- Breaks multi-session workflows\n- Creates confusion: CLI works (`./bd`) but MCP tools don't\n\n## Current Workaround\nManually call `mcp__beads__set_context()` at start of every Amp session.\n\n## Root Cause\nMCP server is stateful and doesn't persist workspace context across restarts.\n\n## Proposed Fix\n**Option 1 (Best)**: Auto-detect workspace from current working directory\n- Match behavior of CLI `./bd` commands\n- Check for `.beads/` directory in current dir or parents\n- No manual context setting needed\n\n**Option 2**: Persist context in MCP server state file\n- Save last workspace_root to `~/.config/beads/mcp_context.json`\n- Restore on server startup\n\n**Option 3**: Require explicit context in every MCP call\n- Add optional `workspace_root` parameter to all MCP tools\n- Fall back to saved context if not provided\n\nAcceptance:\n- MCP tools work across Amp restarts without manual set_context()\n- Auto-detection matches CLI behavior (walks up from CWD)\n- Clear error message when no workspace found\n- set_context() still works for explicit override\n- BEADS_WORKING_DIR env var support\n- Integration test validates restart behavior","design":"**Recommended Implementation: Option 1 (Auto-detect)**\n\n1. Workspace Discovery Algorithm (same as CLI):\n   - Start from CWD or provided directory\n   - Walk up directory tree looking for .beads/beads.db\n   - Cache result for performance\n\n2. MCP Tool Wrapper Changes:\n   - Before each MCP tool execution, check if workspace is set\n   - If not set, try auto-detection from CWD\n   - If found, auto-connect and cache\n   - If not found, return clear error with instructions\n\n3. Fallback Behavior:\n   - Auto-detect from CWD first\n   - Check BEADS_WORKING_DIR env var\n   - Check ~/.config/beads/last_workspace (persisted)\n   - Return actionable error if all fail\n\n4. Backwards Compatibility:\n   - Keep set_context() working for explicit control\n   - Auto-detect is always tried first if no explicit context\n   - set_context() takes precedence over auto-detect","status":"closed","priority":0,"issue_type":"bug","created_at":"2025-11-07T23:50:52.083111-08:00","updated_at":"2025-11-07T23:58:44.397502-08:00","closed_at":"2025-11-07T23:58:44.397502-08:00","source_repo":"."}
 {"id":"bd-8zpg","content_hash":"31c8e1312c7d75e9c17f9557f86bc642ca47e5c9a39d4f7e76429cc61bc9793d","title":"Add tests for bd init --contributor wizard","description":"Write integration tests for the contributor wizard:\n- Test fork detection logic\n- Test planning repo creation\n- Test config setup\n- Test with/without upstream remote\n- Test with SSH vs HTTPS origins","status":"closed","priority":2,"issue_type":"task","created_at":"2025-11-05T18:58:18.171851-08:00","updated_at":"2025-11-06T18:19:16.232739-08:00","closed_at":"2025-11-06T16:14:06.341689-08:00","source_repo":"."}
 {"id":"bd-9063acda","content_hash":"0ea4606188e376705c46a14e5d64da1b706aad47a39054a732c21330db601960","title":"Clean up linter errors (914 total issues)","description":"The codebase has 914 linter issues reported by golangci-lint. While many are documented as baseline in LINTING.md, we should clean these up systematically to improve code quality and maintainability.","design":"Break down by linter category, prioritizing high-impact issues:\n1. dupl (7) - Code duplication\n2. goconst (12) - Repeated strings\n3. gocyclo (11) - High complexity functions\n4. revive (78) - Style issues\n5. gosec (102) - Security warnings\n6. errcheck (683) - Unchecked errors (many in tests)","acceptance_criteria":"All linter categories reduced to acceptable levels, with remaining baseline documented in LINTING.md","notes":"Reduced from 56 to 41 issues locally, then to 0 issues.\n\n**Fixed in commits:**\n- c2c7eda: Fixed 15 actual errors (dupl, gosec, revive, staticcheck, unparam)\n- 963181d: Configured exclusions to get to 0 issues locally\n\n**Current status:**\n- ✅ Local: golangci-lint reports 0 issues\n- ❌ CI: Still failing (see [deleted:bd-cb64c226.1])\n\n**Problem:**\nConfig v2 format or golangci-lint-action@v8 compatibility issue causing CI to fail despite local success.\n\n**Next:** Debug [deleted:bd-cb64c226.1] to fix CI/local discrepancy","status":"closed","priority":2,"issue_type":"epic","created_at":"2025-10-24T01:01:12.997982-07:00","updated_at":"2025-11-04T11:10:23.532431-08:00","closed_at":"2025-11-04T11:10:23.532433-08:00","source_repo":"."}
@@ -180,22 +179,21 @@
 {"id":"bd-9f20","content_hash":"fd9e463ab1b81e62f5ae1441e8c3a661361031a30e6a95502152bb4d7eecf7b2","title":"DetectCycles SQL query has bug preventing cycle detection","description":"The DetectCycles function's SQL query has a bug in the LIKE filter that prevents it from detecting cycles.\n\nCurrent code (line 571):\n```sql\nAND p.path NOT LIKE '%' || d.depends_on_id || '→%'\n```\n\nThis prevents ANY revisit to nodes, including returning to the start node to complete a cycle.\n\nFix:\n```sql\nAND (d.depends_on_id = p.start_id OR p.path NOT LIKE '%' || d.depends_on_id || '→%')\n```\n\nThis allows revisiting the start node (to detect the cycle) while still preventing intermediate node revisits.\n\nImpact: Currently DetectCycles cannot detect any cycles, but this hasn't been noticed because AddDependency prevents cycles from being created. The function would only matter if cycles were manually inserted into the database.","status":"closed","priority":3,"issue_type":"bug","created_at":"2025-11-01T22:50:32.552763-07:00","updated_at":"2025-11-01T22:52:02.247443-07:00","closed_at":"2025-11-01T22:52:02.247443-07:00","source_repo":"."}
 {"id":"bd-9f4a","content_hash":"ff058f9bad890bee6a00df24c846f523980473d47c702097164deea7504886a4","title":"Document external_ref in content hash behavior","description":"The content hash includes external_ref, which has implications that should be documented.\n\nCurrent behavior:\n- external_ref is included in content hash calculation (collision.go:158-160)\n- Changing external_ref changes content hash\n- This means: local issue → add external_ref → different hash\n\nImplications:\n- Local issue + external_ref addition = looks like 'new content'\n- May not match by content hash in some scenarios\n- Generally correct behavior, but subtle\n\nAction items:\n- Document in code comments\n- Add to ARCHITECTURE.md or similar\n- Add test demonstrating this behavior\n- Consider if this is desired long-term\n\nRelated: bd-1022\nFiles: internal/storage/sqlite/collision.go:158-160","status":"open","priority":4,"issue_type":"task","created_at":"2025-11-02T15:32:47.715458-08:00","updated_at":"2025-11-02T15:32:47.715458-08:00","source_repo":"."}
 {"id":"bd-9li4","content_hash":"7ae7b885e82a2de333584c01f690dbc3ecb924603f18e316f5c91cc44e2256f8","title":"Create Docker image for Agent Mail","description":"Containerize Agent Mail server for easy deployment.\n\nAcceptance Criteria:\n- Dockerfile with Python 3.14\n- Health check endpoint\n- Volume mount for storage\n- Environment variable configuration\n- Multi-arch builds (amd64, arm64)\n\nFile: deployment/agent-mail/Dockerfile","status":"open","priority":3,"issue_type":"task","created_at":"2025-11-07T22:43:43.231964-08:00","updated_at":"2025-11-07T22:43:43.231964-08:00","source_repo":"."}
-{"id":"bd-9mnw","content_hash":"942bdfde12b32d268a7643fb64e4f92fa466cb6564434283a38378f1ce44973e","title":"Issue 1","description":"","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-07T19:07:16.329643-08:00","updated_at":"2025-11-07T19:07:16.329643-08:00","source_repo":"."}
+{"id":"bd-9mnw","content_hash":"349a819f81aad88dffd0c5bd232d2d2e6a43710d1207aa200fb0e1555b10af3e","title":"Issue 1","description":"","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-07T19:07:16.329643-08:00","updated_at":"2025-11-08T00:20:30.589211-08:00","closed_at":"2025-11-08T00:20:30.589211-08:00","source_repo":"."}
 {"id":"bd-9msn","content_hash":"69ef2ebc5a847eb407c37e9039391d8ebc761a4cee3b60537de4f5a12011bec3","title":"Add monitoring and alerting","description":"Observability for production Agent Mail server.\n\nAcceptance Criteria:\n- Health check endpoint (/health)\n- Prometheus metrics export\n- Grafana dashboard\n- Alerts for server downtime\n- Alerts for high error rate\n- Log aggregation config\n\nFile: deployment/agent-mail/monitoring/","status":"open","priority":3,"issue_type":"task","created_at":"2025-11-07T22:43:43.354117-08:00","updated_at":"2025-11-07T22:43:43.354117-08:00","source_repo":".","dependencies":[{"issue_id":"bd-9msn","depends_on_id":"bd-z3s3","type":"blocks","created_at":"2025-11-07T23:04:28.050074-08:00","created_by":"daemon"}]}
 {"id":"bd-9rw1","content_hash":"17ad82d17e34ca2bfab2fa7240517520e3c42953a780282664f50cf038c97688","title":"Support P-prefix priority format (P0-P4) in create and update commands","description":"","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-11-05T13:56:04.796826-08:00","updated_at":"2025-11-05T13:56:08.157061-08:00","closed_at":"2025-11-05T13:56:08.157061-08:00","source_repo":"."}
 {"id":"bd-9v7l","content_hash":"c2c43176aa30346f4ce595f1d94c0c7d1c6fbcaae3e82752bd82d3004a28fc74","title":"bd status \"Recent Activity\" is misleading - should use git history","description":"## Problem\n\n`bd status` shows \"Recent Activity (last 7 days)\" but the numbers are wrong. It only looks at database timestamps, not git history. Says \"141 issues closed in last 7 days\" when thousands have actually come and go.\n\n## Issues\n\n1. Only queries database timestamps, not git history\n2. 7 days is too long a window\n3. Numbers don't reflect actual activity in JSONL git history\n\n## Proposed Fix\n\nEither:\n- Query git history of `.beads/beads.jsonl` to get actual activity (last 24-48 hours)\n- Remove \"Recent Activity\" section entirely if not useful\n- Make time window configurable and default to 24h\n\n## Example Output (Current)\n```\nRecent Activity (last 7 days):\nIssues Created:    174\nIssues Closed:     141\nIssues Updated:    37\n```\nThis is misleading when thousands of issues have actually cycled through.","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-11-05T01:03:00.234813-08:00","updated_at":"2025-11-06T18:47:42.682987-08:00","closed_at":"2025-11-06T18:47:42.682987-08:00","source_repo":"."}
 {"id":"bd-a03d5e36","content_hash":"b4ee73e439a133a77e5df27e3e457674dbc9968fdbee0dc630175726960bb8cf","title":"Improve integration test coverage for stateful features","description":"","design":"## Context\n\nbd-70419816 revealed a critical gap: the export deduplication feature had unit tests but no integration tests simulating real-world git operations. This led to silent data loss in production.\n\n## Root Cause\n- Unit tests only tested functions in isolation\n- No integration tests for git operations (pull, reset, checkout) modifying JSONL\n- No tests validating export_hashes and JSONL stay in sync\n- Missing tests for stateful distributed system interactions (DB + JSONL + git)\n\n## Completed (bd-70419816)\n✓ TestJSONLIntegrityValidation - unit tests for validation logic\n✓ TestImportClearsExportHashes - tests import clears hashes\n✓ TestExportIntegrityAfterJSONLTruncation - simulates git reset (would have caught bd-70419816)\n✓ TestExportIntegrityAfterJSONLDeletion - tests recovery from file deletion\n✓ TestMultipleExportsStayConsistent - tests repeated exports\n\n## Still Needed (High Priority)\n1. Multi-repo sync test - two clones staying in sync after push/pull\n2. Auto-flush integration test - JSONL integrity preserved during auto-flush\n3. Daemon auto-sync integration test - complex state management\n4. Import after corruption test - recovery from partial data loss\n\n## Medium Priority\n- Partial export failure handling (disk full, network interruption)\n- Concurrent export/import race conditions\n- Large dataset performance tests (1000+ issues)\n- Export hash migration tests (version upgrades)\n\n## Testing Principles\n1. Test real-world scenarios: git ops, user errors, system failures, concurrent ops\n2. Integration tests for stateful systems (DB + files + git)\n3. Regression test for every bug fix\n4. Test invariants: JSONL count == DB count, hash consistency, etc.\n\n## Key Lesson\nStateful distributed systems need integration tests, not just unit tests.","acceptance_criteria":"- [ ] Multi-repo sync test implemented\n- [ ] Auto-flush integration test implemented  \n- [ ] Daemon auto-sync integration test implemented\n- [ ] Testing guidelines added to CONTRIBUTING.md\n- [ ] CI runs integration tests\n- [ ] All critical workflows have integration test coverage","status":"open","priority":2,"issue_type":"epic","created_at":"2025-10-29T21:53:15.397137-07:00","updated_at":"2025-10-30T17:12:58.206063-07:00","source_repo":"."}
 {"id":"bd-a101","content_hash":"805d60a6f4d9205a7e0498f63e9c0bd98a36eb86800304a123cd9122f694b5ab","title":"Support separate branch for beads commits","description":"Allow beads to commit to a separate branch (e.g., beads-metadata) using git worktrees to support protected main branch workflows.\n\nSolves GitHub Issue #205 - Users need to protect main branch while maintaining beads workflow.\n\nKey advantages:\n- Works on any git platform\n- Main branch stays protected  \n- No disruption to user's working directory\n- Backward compatible (opt-in via config)\n- Minimal disk overhead (sparse checkout)\n\nTotal estimate: 17-24 days (4-6 weeks with parallel work)","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-11-02T15:21:20.098247-08:00","updated_at":"2025-11-04T12:36:53.772727-08:00","closed_at":"2025-11-04T12:36:53.772727-08:00","external_ref":"GH-205","source_repo":"."}
 {"id":"bd-a4b5","content_hash":"3966f6f9ab3202fe740f2936c7743f679ea42b75803c99465176ccf69ffd9dd7","title":"Implement git worktree management","description":"Create git worktree lifecycle management for separate beads branch.\n\nTasks:\n- Create internal/git/worktree.go\n- Implement CreateBeadsWorktree(branch, path)\n- Implement RemoveBeadsWorktree(path)\n- Implement CheckWorktreeHealth(path)\n- Configure sparse checkout (only .beads/)\n- Implement SyncJSONLToWorktree()\n- Handle worktree errors gracefully\n- Auto-cleanup on config change\n\nEstimated effort: 3-4 days","acceptance_criteria":"- Worktree created successfully on first use\n- Sparse checkout limits to .beads/ only\n- Health check detects and fixes broken worktrees\n- JSONL synced correctly before commits\n- Cleanup removes worktree completely","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-02T15:22:35.56423-08:00","updated_at":"2025-11-04T11:10:23.533053-08:00","closed_at":"2025-11-04T11:10:23.533055-08:00","source_repo":".","dependencies":[{"issue_id":"bd-a4b5","depends_on_id":"bd-a101","type":"parent-child","created_at":"2025-11-02T15:22:48.359843-08:00","created_by":"stevey"}]}
-{"id":"bd-a557","content_hash":"35b394c75f08f60e3a8bf4cb5f837fd7644ae1bbc7a050d0f4b78d01c9e7a33e","title":"Issue 1 to reopen","description":"","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-07T19:07:14.908446-08:00","updated_at":"2025-11-07T23:21:44.924166-08:00","closed_at":"2025-11-07T23:21:44.924169-08:00","source_repo":"."}
 {"id":"bd-a9699011","content_hash":"87d969cf57e247ebfac4f052a9ecbd1254bc55070b87b5ffb78a2b6ee2afddb6","title":"GH#146: No color showing in terminal for some users","description":"User reports color not working in macOS (Taho 26.0.1) with iTerm 3.6.4 and Terminal.app, despite color working elsewhere in terminal. Python rich and printf escape codes work.\n\nNeed to investigate:\n- Is NO_COLOR env var set?\n- Terminal type detection?\n- fatih/color library configuration\n- Does bd list show colors? bd ready? bd init?\n- What's the output of: echo $TERM, echo $NO_COLOR","status":"open","priority":2,"issue_type":"bug","created_at":"2025-10-24T22:26:36.22163-07:00","updated_at":"2025-10-30T17:12:58.2142-07:00","external_ref":"github:146","source_repo":"."}
 {"id":"bd-ad5e","content_hash":"67fdba1ba5b838384b16b82ff45e200cb5fd4960795bb5ae29d6fdec549170ca","title":"Add AI planning docs management guidance to bd onboard (GH-196)","description":"Enhanced bd onboard command to provide guidance for managing AI-generated planning documents (Claude slop).\n\nAddresses GitHub issue #196: https://github.com/steveyegge/beads/issues/196\n\nChanges:\n- Added Managing AI-Generated Planning Documents section to bd onboard\n- Recommends using history/ directory for ephemeral planning files\n- Updated AGENTS.md to demonstrate the pattern\n- Added comprehensive tests\n\nCommit: d46177d","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-11-02T17:11:33.183636-08:00","updated_at":"2025-11-02T17:12:05.599633-08:00","closed_at":"2025-11-02T17:12:05.599633-08:00","source_repo":"."}
 {"id":"bd-aec5439f","content_hash":"1b42289a0cb1da0626a69c6f004bf62fc9ba6e3a0f8eb70159c5f1446497020b","title":"Update LINTING.md with current baseline","description":"After cleanup, document the remaining acceptable baseline in LINTING.md so we can track regression.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-27T18:53:10.38679-07:00","updated_at":"2025-11-06T20:06:49.218701-08:00","closed_at":"2025-11-06T19:41:08.661851-08:00","source_repo":"."}
 {"id":"bd-aewm","content_hash":"b9f0ebb0c99a35c39c918250a1220f74bfcd77905b85c66715b36d1df9c5ec4b","title":"bd-hv01: Missing cleanup of .merged temp file on failure","description":"Problem: deletion_tracking.go:49 creates tmpMerged file but does not clean up on failure, causing disk space leak and potential interference with subsequent syncs.\n\nFix: Add defer os.Remove(tmpMerged) after creating temp file path.\n\nFiles: cmd/bd/deletion_tracking.go:38-89","status":"closed","priority":2,"issue_type":"bug","created_at":"2025-11-06T18:16:24.326719-08:00","updated_at":"2025-11-06T18:46:55.924379-08:00","closed_at":"2025-11-06T18:46:55.924379-08:00","source_repo":".","dependencies":[{"issue_id":"bd-aewm","depends_on_id":"bd-rbxi","type":"parent-child","created_at":"2025-11-06T18:19:15.061462-08:00","created_by":"daemon"}]}
 {"id":"bd-aysr","content_hash":"f8ff127568f471cc42391b1287cce69b376fb1b49bbef20a24d3394f57fba066","title":"Test numeric 1","description":"","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-05T12:58:41.498034-08:00","updated_at":"2025-11-05T12:58:44.73082-08:00","closed_at":"2025-11-05T12:58:44.73082-08:00","source_repo":"."}
-{"id":"bd-az0m","content_hash":"91dd58e84b57c84ae065004ef4c15d0b5330935a5fde35eed489a93452feb2e9","title":"Issue 1","description":"","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-07T19:07:21.012347-08:00","updated_at":"2025-11-07T23:21:44.92501-08:00","closed_at":"2025-11-07T23:21:44.925012-08:00","source_repo":".","dependencies":[{"issue_id":"bd-az0m","depends_on_id":"bd-bvo2","type":"related","created_at":"2025-11-07T19:07:21.069031-08:00","created_by":"daemon"}]}
 {"id":"bd-azqv","content_hash":"b4e68adcec7b19f567ebee47f505ca6b529c17b4c4b885282cfc564e8a874f9f","title":"Ready issue","description":"","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-07T19:04:22.247039-08:00","updated_at":"2025-11-07T22:07:17.344986-08:00","closed_at":"2025-11-07T21:55:09.429024-08:00","source_repo":"."}
 {"id":"bd-b121","content_hash":"5d71e793a6de110be977bf87cfd25c3b461f452a1e8e44633452de1f8343a098","title":"Fix :memory: database connection pool issue causing \"no such table\" errors","description":"Critical bug in v0.21.6 where :memory: databases with cache=shared create multiple connections in the pool, causing intermittent \"no such table\" errors. SQLite's shared cache for in-memory databases only works reliably with a single connection.\n\nRoot cause: Missing db.SetMaxOpenConns(1) after sql.Open() for :memory: databases.\n\nImpact: 37 test failures in VC project, affects all consumers using :memory: for testing.","acceptance_criteria":"- Add db.SetMaxOpenConns(1) for :memory: databases only\n- Verify VC test suite passes (37 previously failing tests)\n- Add a test in Beads that reproduces the issue\n- Document the pool limitation in code comments\n- Release as Beads v0.21.7","status":"closed","priority":0,"issue_type":"bug","created_at":"2025-11-04T00:52:56.318619-08:00","updated_at":"2025-11-05T11:31:27.50439-08:00","closed_at":"2025-11-05T00:50:00.558124-08:00","source_repo":"."}
+{"id":"bd-b134","content_hash":"87166a251a1e2459cbc2538769bea4e3f6a9f6c96aae174c7fcb0099f0de0085","title":"Add tests for Integration Layer Implementation","description":"While implementing bd-wfmw, noticed missing tests","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-08T00:20:30.804172-08:00","updated_at":"2025-11-08T00:20:30.804172-08:00","source_repo":".","dependencies":[{"issue_id":"bd-b134","depends_on_id":"bd-wfmw","type":"discovered-from","created_at":"2025-11-08T00:20:30.850776-08:00","created_by":"daemon"}]}
 {"id":"bd-b245","content_hash":"5ad06a3b7126d4a4eb779cd01319cc4541869f4295afcf6f91cf7d6d36078cb0","title":"Add migration registry and simplify New()","description":"Create migrations.go with Migration type and registry. Change New() to: openDB -\u003e initSchema -\u003e RunMigrations(db). This removes 8+ separate migrate functions from New().","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-01T11:41:14.862623-07:00","updated_at":"2025-11-02T12:55:59.954845-08:00","closed_at":"2025-11-02T12:55:59.954854-08:00","source_repo":"."}
 {"id":"bd-b47c034e","content_hash":"1e8e5ae6388d6546f55421886bd88e7acd2fdade1052d2d7d1b193276777c05d","title":"Address gosec security warnings (102 issues)","description":"Security linter warnings: file permissions (0755 should be 0750), G304 file inclusion via variable, G204 subprocess launches. Many are false positives but should be reviewed.","design":"Review each gosec warning. Add exclusions for legitimate cases to .golangci.yml. Fix real security issues (overly permissive file modes).","status":"closed","priority":2,"issue_type":"task","created_at":"2025-10-25T13:47:10.719134-07:00","updated_at":"2025-11-04T11:10:23.533333-08:00","closed_at":"2025-11-04T11:10:23.533338-08:00","source_repo":"."}
 {"id":"bd-b4b0","content_hash":"ab3833b7a2cd79e39cbf6e41e35da88c8c45581dff3862bad2b8476b37c3b494","title":"Implement fs bridge layer for WASM (Go syscall/js to Node.js fs)","description":"Go's os package in WASM returns 'not implemented on js' for mkdir and other file operations. Need to create a bridge layer that:\n\n1. Detects WASM environment (GOOS=js)\n2. Uses syscall/js to call Node.js fs module functions\n3. Implements wrappers for:\n   - os.MkdirAll\n   - os.ReadFile / os.WriteFile\n   - os.Open / os.Create\n   - os.Stat / os.Lstat\n   - filepath operations\n   \nApproach:\n- Create internal/wasm/fs_bridge.go with //go:build js \u0026\u0026 wasm\n- Export Node.js fs functions to Go using global.readFileSync, global.writeFileSync, etc.\n- Wrap in Go API that matches os package signatures\n- Update beads.go and storage layer to use bridge when in WASM\n\nThis unblocks bd-4462 (basic WASM testing) and [deleted:bd-5bbf] (feature parity testing).","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-02T22:22:42.796412-08:00","updated_at":"2025-11-03T22:16:38.855334-08:00","closed_at":"2025-11-02T22:47:49.586218-08:00","source_repo":".","dependencies":[{"issue_id":"bd-b4b0","depends_on_id":"bd-44d0","type":"parent-child","created_at":"2025-11-02T22:23:49.585675-08:00","created_by":"stevey"}]}
@@ -207,11 +205,9 @@
 {"id":"bd-b92a","content_hash":"01d8b852f1d9936835a253f6b9576c401cbd143772302b25ac859db79b6be76a","title":"Wire config to import pipeline","description":"Connect import.orphan_handling config to importer.go and sqlite validation functions. Pass mode flag through call chain. Implement all four modes (strict/resurrect/skip/allow) with proper error messages and logging.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-04T12:32:08.612142-08:00","updated_at":"2025-11-05T00:44:27.949021-08:00","closed_at":"2025-11-05T00:44:27.949024-08:00","source_repo":"."}
 {"id":"bd-bb08","content_hash":"df5b8f359f459b9fc8a24e089878e65222f4b7ba541e829ebb1d34e5beb3a9fc","title":"Add ON DELETE CASCADE to child_counters schema","description":"Update schema.go child_counters table foreign key with ON DELETE CASCADE. When parent deleted, child counter should also be deleted. If parent is resurrected, counter gets recreated from scratch. Add migration for existing databases.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-04T12:32:30.681452-08:00","updated_at":"2025-11-05T11:31:27.505024-08:00","closed_at":"2025-11-05T00:55:12.427194-08:00","source_repo":"."}
 {"id":"bd-bc2c6191","content_hash":"46ab7e965823421a1cc06fdbb3a1faa8ef31f0c46487cd05a4cec8127af8e480","title":"Audit Current Cache Usage","description":"Understand exactly what code depends on the storage cache","acceptance_criteria":"- Document showing all cache dependencies\n- Confirmation that removing cache won't break MCP\n- List of tests that need updating\n\nFiles to examine:\n- internal/rpc/server_cache_storage.go (cache implementation)\n- internal/rpc/client.go (how req.Cwd is set)\n- internal/rpc/server_*.go (all getStorageForRequest calls)\n- integrations/beads-mcp/ (MCP multi-repo logic)\n\nTasks:\n- Document all callers of getStorageForRequest()\n- Verify req.Cwd is only set by RPC client for database discovery\n- Confirm MCP server doesn't rely on multi-repo cache behavior\n- Check if any tests assume multi-repo routing\n- Review environment variables: BEADS_DAEMON_MAX_CACHE_SIZE, BEADS_DAEMON_CACHE_TTL, BEADS_DAEMON_MEMORY_THRESHOLD_MB","notes":"Audit complete. See CACHE_AUDIT.md for full findings.\n\nSummary:\n- Cache was already removed in commit 322ab63 (2025-10-28)\n- server_cache_storage.go deleted (~286 lines)\n- All getStorageForRequest calls replaced with s.storage\n- All environment variables removed\n- MCP multi-repo works via per-project daemon architecture\n- All tests updated and passing\n- Only stale comment in server.go needed fixing","status":"closed","priority":1,"issue_type":"task","created_at":"2025-10-27T23:02:43.506373-07:00","updated_at":"2025-11-06T20:06:49.218998-08:00","closed_at":"2025-11-06T19:48:30.520616-08:00","source_repo":"."}
-{"id":"bd-bc7l","content_hash":"bc091a6fed46130e6cb791c4d58c777b904e22f92cc6921d231053abf48c3c4b","title":"Issue 2 to reopen","description":"","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-07T19:07:14.942108-08:00","updated_at":"2025-11-07T23:21:44.922001-08:00","closed_at":"2025-11-07T23:21:44.922005-08:00","source_repo":"."}
 {"id":"bd-be7a","content_hash":"d9043a7a49f8e42dc88c3c01aaa178c1560b67c1637c3373b39c387272e8b725","title":"Create npm package structure with package.json","description":"Set up initial npm package structure for @beads/bd:\n\n## Files to create\n- npm/package.json - Package metadata, dependencies, scripts\n- npm/bin/bd - CLI wrapper script that invokes native binary\n- npm/.gitignore - Ignore downloaded binaries\n- npm/README.md - Installation and usage instructions\n\n## package.json structure\n- Name: @beads/bd (scoped package)\n- Main: index.js (exports binary path)\n- Bin: bin/bd (CLI entry point)\n- Scripts: postinstall (download binary)\n- Keywords: issue-tracker, cli, beads, bd\n- License: MIT\n\n## Bin wrapper\nSimple Node.js script that:\n- Spawns native binary with child_process.spawn\n- Passes through all arguments and stdio\n- Exits with binary's exit code","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-02T23:39:47.416779-08:00","updated_at":"2025-11-03T10:31:45.381258-08:00","closed_at":"2025-11-03T10:31:45.381258-08:00","source_repo":".","dependencies":[{"issue_id":"bd-be7a","depends_on_id":"bd-febc","type":"parent-child","created_at":"2025-11-02T23:40:32.923859-08:00","created_by":"daemon"}]}
 {"id":"bd-bgca","content_hash":"eaf260976156d4aa03681369efec757f8119f9d5ec75703d54b0f1359e5acb25","title":"Latency test manual","description":"","status":"closed","priority":3,"issue_type":"task","created_at":"2025-11-08T00:04:25.028223-08:00","updated_at":"2025-11-08T00:06:46.169654-08:00","closed_at":"2025-11-08T00:06:46.169654-08:00","source_repo":"."}
 {"id":"bd-buol","content_hash":"020dc9dbbd7f3e2b40c35f01bf8a65cf32ab419c188081493ea4e541bad1442e","title":"Invert control for compact: provide tools for agent-driven compaction","description":"Currently compact requires Anthropic API key because bd calls the AI directly. This is backwards - we should provide tools (like all other bd commands) that let an AI agent perform the compaction. The agent decides what to keep/merge, not bd. Related to GH #243 complaint about API key requirement.","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-11-07T00:27:28.498069-08:00","updated_at":"2025-11-07T23:18:08.38606-08:00","closed_at":"2025-11-07T23:08:51.67473-08:00","source_repo":"."}
-{"id":"bd-bvo2","content_hash":"66fd2d53d97eb8dcb3231e82702ca7eb0f1887dc9b3ee2b2865e0d5158ca7311","title":"Issue 2","description":"","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-07T19:07:21.046126-08:00","updated_at":"2025-11-07T23:21:44.923638-08:00","closed_at":"2025-11-07T23:21:44.92364-08:00","source_repo":"."}
 {"id":"bd-by3x","content_hash":"80149be1ddf4ef26d5d56c444895be01ec8b59492c258c2365fa1c2619061bbd","title":"Windows binaries lack SQLite support (GH #253)","description":"Windows users installing via install.ps1 get \"sql: unknown driver sqlite\" error. Root cause: GoReleaser was building with CGO_ENABLED=0, which excludes SQLite driver.\n\nFixed by:\n1. Enabling CGO in .goreleaser.yml\n2. Installing MinGW cross-compiler in release workflow\n3. Splitting builds per platform to set correct CC for Windows\n\nNeeds new release to fix for users.","status":"closed","priority":0,"issue_type":"bug","created_at":"2025-11-07T15:54:13.134815-08:00","updated_at":"2025-11-07T15:55:07.024156-08:00","closed_at":"2025-11-07T15:55:07.024156-08:00","source_repo":"."}
 {"id":"bd-bzfy","content_hash":"90bbde4d90d68728a9377d5d966682dc836740f1be43a0cf80d3cc69002a560b","title":"Integrate beads-merge tool by @neongreen","description":"**Context**: @neongreen built a production-ready 3-way merge tool for JSONL files that works with both Git and Jujutsu. This is superior to our planned bd resolve-conflicts because it prevents conflicts proactively instead of resolving them after the fact.\n\n**Tool**: https://github.com/neongreen/mono/tree/main/beads-merge\n\n**What it does**:\n- 3-way merge of JSONL files (base, left, right)\n- Field-level merging (titles, status, priority, etc.)\n- Smart dependency merging (union + dedup)\n- Conflict markers for unresolvable conflicts\n- Exit code 1 for conflicts (standard)\n\n**Integration options**:\n\n1. **Recommend (minimal effort)** - Document in AGENTS.md + TROUBLESHOOTING.md\n2. **Bundle binary** - Include in releases (cross-platform builds)\n3. **Port to Go** - Reimplement in bd codebase\n4. **Auto-install hook** - During bd init, offer to install merge driver\n\n**Recommendation**: Start with option 1 (document), then option 2 (bundle) once proven.\n\n**Related**: bd-5f483051 (bd resolve-conflicts - can close as superseded)","notes":"Created GitHub issue to discuss integration approach with @neongreen: https://github.com/neongreen/mono/issues/240\n\nAwaiting their preference on:\n1. Vendor with attribution (fastest)\n2. Extract as importable module (best long-term)\n3. Keep as separate tool (current state)\n\nNext: Wait for response before proceeding with integration.\n\nUPDATE 2025-11-06: @neongreen gave permission to vendor! Quote: \"I switched from beads to my own thing (tk) so I'm very happy to give beads-merge away — feel free to move it into the beads repo and I will point mono's readme to beads\"\n\nNext: Vendor beads-merge with full attribution","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-11-05T11:31:44.906652-08:00","updated_at":"2025-11-06T18:19:16.233387-08:00","closed_at":"2025-11-06T15:38:37.052274-08:00","source_repo":"."}
 {"id":"bd-c13f","content_hash":"0e428b0589a6f763a32195b32241ec71141793101ee102df5df69d3c7fadfaaf","title":"Add unit tests for parent resurrection","description":"Test resurrection with deleted parent (should succeed), resurrection with never-existed parent (should fail gracefully), multi-level resurrection (bd-abc.1.2 with both parents missing). Verify tombstone creation and is_tombstone flag.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-04T12:32:21.325335-08:00","updated_at":"2025-11-05T00:08:42.813728-08:00","closed_at":"2025-11-05T00:08:42.813731-08:00","source_repo":"."}
@@ -257,7 +253,6 @@
 {"id":"bd-eimz","content_hash":"2742ae807c9e9c825863348d2fd3424f3db109fa753caee00f39c07e238d002f","title":"Add Agent Mail to QUICKSTART.md","description":"Mention Agent Mail as optional advanced feature in quickstart guide.\n\nFile: docs/QUICKSTART.md","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-07T22:42:51.357009-08:00","updated_at":"2025-11-07T22:42:51.357009-08:00","source_repo":".","dependencies":[{"issue_id":"bd-eimz","depends_on_id":"bd-xzrv","type":"blocks","created_at":"2025-11-07T23:04:09.841956-08:00","created_by":"daemon"}]}
 {"id":"bd-epvx","content_hash":"37513b74fb23b40be54c502167c12fe287025afd38f2c040061bdb678bac4006","title":"Create Go adapter library (optional)","description":"For agents written in Go, provide native adapter library instead of shelling out to curl.\n\nAcceptance Criteria:\n- agentmail.Client struct\n- HTTP client with timeout/retry logic\n- Same API as Python adapter\n- Example usage in examples/go-agent/\n- Unit tests\n\nFile: pkg/agentmail/client.go\n\nNote: Lower priority - can shell out to curl initially","status":"open","priority":3,"issue_type":"feature","created_at":"2025-11-07T22:42:28.781577-08:00","updated_at":"2025-11-07T22:42:28.781577-08:00","source_repo":".","dependencies":[{"issue_id":"bd-epvx","depends_on_id":"bd-m9th","type":"blocks","created_at":"2025-11-07T23:04:01.47471-08:00","created_by":"daemon"}]}
 {"id":"bd-eqjc","content_hash":"8acc3d91ca9f9bef36d19358cb7f24eac247583a0e6701036aaff92607474c21","title":"bd init creates nested .beads directories","description":"bd init sometimes creates .beads/.beads/ nested directories, which should never happen. This occurs fairly often and can cause confusion about which .beads directory is active. Need to add validation to detect if already inside a .beads directory and either error or use the parent .beads location.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-06T22:21:22.948727-08:00","updated_at":"2025-11-06T22:22:41.04958-08:00","closed_at":"2025-11-06T22:22:41.04958-08:00","source_repo":"."}
-{"id":"bd-es19","content_hash":"5c5951971ed466f30fa12e1d7f73457ecc430464726516f069e6659f762687e6","title":"BG's issue to reopen","description":"","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-07T19:07:14.231525-08:00","updated_at":"2025-11-07T23:21:44.924473-08:00","closed_at":"2025-11-07T23:21:44.924475-08:00","source_repo":"."}
 {"id":"bd-expt","content_hash":"6e14db64fb24882e4cf544ec24eaa994aba970fd0ae31c72dda2d8ea88560753","title":"RPC fast-fail: stat socket before dial, cap timeouts to 200ms","description":"Eliminate 5s delay when daemon socket is missing by:\n1. Add os.Stat(socketPath) check before dialing in TryConnect\n2. Return (nil, nil) immediately if socket doesn't exist\n3. Set default dial timeout to 200ms in TryConnect\n4. Keep TryConnectWithTimeout for explicit health/status checks (1-2s)\n\nThis prevents clients from waiting through full timeout when no daemon is running.","status":"closed","priority":0,"issue_type":"task","created_at":"2025-11-07T16:42:12.688526-08:00","updated_at":"2025-11-07T22:07:17.345918-08:00","closed_at":"2025-11-07T21:04:21.671436-08:00","source_repo":".","dependencies":[{"issue_id":"bd-expt","depends_on_id":"bd-ndyz","type":"discovered-from","created_at":"2025-11-07T16:42:12.689284-08:00","created_by":"daemon"}]}
 {"id":"bd-f282","content_hash":"90043e5e39cbb062ce0ff6a323ce2d0a16465783742d06ac9da1df66d837e025","title":"Test npm package installation locally","description":"Verify npm package works before publishing:\n\n## Local testing\n- Run npm pack in npm/ directory\n- Install tarball globally: npm install -g beads-bd-0.21.5.tgz\n- Test basic commands:\n  - bd --version\n  - bd init --quiet --prefix test\n  - bd create \"Test issue\" -p 1 --json\n  - bd list --json\n  - bd sync\n\n## Test environments\n- macOS (darwin-arm64 and darwin-amd64)\n- Linux (ubuntu docker container for linux-amd64)\n- Windows (optional, if available)\n\n## Validation\n- Binary downloads during postinstall\n- All bd commands work identically to native\n- No permission issues\n- Proper error messages on failure","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-02T23:40:05.71835-08:00","updated_at":"2025-11-03T10:31:45.382577-08:00","closed_at":"2025-11-03T10:31:45.382577-08:00","source_repo":".","dependencies":[{"issue_id":"bd-f282","depends_on_id":"bd-febc","type":"parent-child","created_at":"2025-11-02T23:40:32.968748-08:00","created_by":"daemon"}]}
 {"id":"bd-f9a1","content_hash":"97f9387b20f741a9f71ee43b0671b5d970bd594098db299dc871d0b3074c5384","title":"Add index usage verification test for external_ref lookups","description":"Currently we test that idx_issues_external_ref index exists, but we don't verify that it's actually being used by the query planner.\n\nProposed solution:\n- Add test using EXPLAIN QUERY PLAN\n- Verify that 'SEARCH TABLE issues USING INDEX idx_issues_external_ref' appears in plan\n- Ensures O(1) lookup performance is maintained\n\nRelated: bd-1022\nFiles: internal/storage/sqlite/external_ref_test.go:260","status":"closed","priority":3,"issue_type":"task","created_at":"2025-11-02T15:32:09.85419-08:00","updated_at":"2025-11-02T16:04:47.221064-08:00","closed_at":"2025-11-02T16:04:47.221064-08:00","source_repo":"."}
@@ -275,7 +270,7 @@
 {"id":"bd-febc","content_hash":"686e0d5e3d56abe0edbd203d3d138ee3b013f55b6aed1eac05a56e6e3a5cc261","title":"npm package for bd with native binaries","description":"Create an npm package that wraps native bd binaries for easy installation in Claude Code for Web and other Node.js environments.\n\n## Problem\nClaude Code for Web sandboxes are full Linux VMs with npm support, but cannot easily download binaries from GitHub releases due to network restrictions or tooling limitations.\n\n## Solution\nPublish bd as an npm package that:\n- Downloads platform-specific native binaries during postinstall\n- Provides a CLI wrapper that invokes the native binary\n- Works seamlessly in Claude Code for Web SessionStart hooks\n- Maintains full feature parity (uses native SQLite)\n\n## Benefits vs WASM\n- ✅ Full SQLite support (no custom VFS needed)\n- ✅ All features work identically to native bd\n- ✅ Better performance (native vs WASM overhead)\n- ✅ ~4 hours effort vs ~2 days for WASM\n- ✅ Minimal maintenance burden\n\n## Success Criteria\n- npm install @beads/bd works in Claude Code for Web\n- All bd commands function identically to native binary\n- SessionStart hook documented for auto-installation\n- Package published to npm registry","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-11-02T23:39:37.684109-08:00","updated_at":"2025-11-03T10:39:44.932565-08:00","closed_at":"2025-11-03T10:39:44.932565-08:00","source_repo":"."}
 {"id":"bd-fkdw","content_hash":"2814bf2dfb18a266af8bac6b7dc9da9460759a58c0b079887847be3200a73c69","title":"Update bash-agent example with Agent Mail integration","description":"Add Agent Mail integration to examples/bash-agent/agent.sh using curl for HTTP calls.\n\nAcceptance Criteria:\n- Health check function using curl\n- Reserve issue before claiming\n- Send notifications on status change\n- Release on completion\n- Graceful degradation if curl fails\n- No bash errors when Agent Mail unavailable\n\nFile: examples/bash-agent/agent.sh","status":"open","priority":2,"issue_type":"feature","created_at":"2025-11-07T22:42:28.722048-08:00","updated_at":"2025-11-07T22:42:28.722048-08:00","source_repo":".","dependencies":[{"issue_id":"bd-fkdw","depends_on_id":"bd-m9th","type":"blocks","created_at":"2025-11-07T23:04:01.398259-08:00","created_by":"daemon"}]}
 {"id":"bd-fsb1","content_hash":"a519fdd6d0ca6f70a177c2cb9441994b28d4bc2fe51a663532d4067caf126049","title":"Test issue","description":"","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-05T11:21:51.383077-08:00","updated_at":"2025-11-05T11:21:56.888913-08:00","closed_at":"2025-11-05T11:21:56.888913-08:00","source_repo":".","labels":["test","urgent"]}
-{"id":"bd-fzbg","content_hash":"ad189f78cd06720b063505e23263dade94b906859af105a6bf5e300a8b4c5782","title":"Update python-agent example with Agent Mail integration","description":"Modify examples/python-agent/agent.py to use Agent Mail adapter at 4 integration points.\n\nAcceptance Criteria:\n- Import and initialize adapter\n- Check inbox before find_ready_work()\n- Reserve issue before claim_task()\n- Notify on status changes\n- Release reservation on complete_task()\n- Works identically when Agent Mail disabled\n- No changes required to core Beads CLI\n\nFile: examples/python-agent/agent.py","status":"open","priority":1,"issue_type":"feature","created_at":"2025-11-07T22:42:28.661337-08:00","updated_at":"2025-11-07T22:42:28.661337-08:00","source_repo":".","dependencies":[{"issue_id":"bd-fzbg","depends_on_id":"bd-m9th","type":"blocks","created_at":"2025-11-07T23:04:01.315332-08:00","created_by":"daemon"}]}
+{"id":"bd-fzbg","content_hash":"88e15598aa82ec06036be38a9e8f6503c131349ba39d8373e11107dc46a8002d","title":"Update python-agent example with Agent Mail integration","description":"Modify examples/python-agent/agent.py to use Agent Mail adapter at 4 integration points.\n\nAcceptance Criteria:\n- Import and initialize adapter\n- Check inbox before find_ready_work()\n- Reserve issue before claim_task()\n- Notify on status changes\n- Release reservation on complete_task()\n- Works identically when Agent Mail disabled\n- No changes required to core Beads CLI\n\nFile: examples/python-agent/agent.py","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-11-07T22:42:28.661337-08:00","updated_at":"2025-11-08T00:20:35.213902-08:00","closed_at":"2025-11-08T00:20:35.213902-08:00","source_repo":".","dependencies":[{"issue_id":"bd-fzbg","depends_on_id":"bd-m9th","type":"blocks","created_at":"2025-11-07T23:04:01.315332-08:00","created_by":"daemon"}]}
 {"id":"bd-gart","content_hash":"59c79c06a74374dbc41066d27192584dcd41d75ddc99348613fd80f323be0f20","title":"Debug test 2","description":"","status":"closed","priority":3,"issue_type":"task","created_at":"2025-11-08T00:04:35.317835-08:00","updated_at":"2025-11-08T00:06:46.18875-08:00","closed_at":"2025-11-08T00:06:46.18875-08:00","source_repo":"."}
 {"id":"bd-gdzd","content_hash":"54a68b8b4c63fd88b33dbf8239de070a3c95f97d4a0aa5f64e694ff1384199b3","title":"Import fails on same-content-different-ID instead of treating as update","description":"## Problem\n\nThe importer still has rename detection (importer.go:482-500) that triggers when same content hash has different IDs. With hash IDs, this shouldn't happen, but when it does (test data, bugs, legacy data), the import fails:\n\n```\nfailed to handle rename bd-ce75 -\u003e bd-5a90: rename collision handling removed - should not occur with hash IDs\n```\n\n## Current Behavior\n\n1. Importer finds same content hash with different IDs\n2. Calls handleRename() (line 490)\n3. handleRename() errors out (line 294): \"rename collision handling removed\"\n4. Import fails\n\n## Expected Behavior\n\nSame content hash + different IDs should be treated as an **update**, not a rename:\n- Keep existing ID (already in database)\n- Update fields if incoming has newer timestamp\n- Discard incoming ID (it's wrong - hash should have generated same ID)\n\n## Impact\n\n- Import fails on legitimate edge cases (test data, data corruption)\n- Cryptic error message\n- Blocks sync operations\n\n## Fix\n\nIn handleRename() or import loop, instead of erroring:\n```go\n// Same content, different ID - treat as update\nif incoming.UpdatedAt.After(existing.UpdatedAt) {\n    existing.Status = incoming.Status\n    // ... copy other fields\n    s.UpdateIssue(ctx, existing)\n}\nresult.Updated++\n```\n\n## Files\n- internal/importer/importer.go:271-294 (handleRename)\n- internal/importer/importer.go:482-500 (rename detection)\n\n## Repro\nImport JSONL with bd-ce75 and bd-5a90 (both \"Test parent issue\" but different content hashes).","status":"closed","priority":0,"issue_type":"bug","created_at":"2025-11-05T00:27:51.150233-08:00","updated_at":"2025-11-05T01:02:54.469971-08:00","closed_at":"2025-11-05T01:02:54.469979-08:00","source_repo":"."}
 {"id":"bd-ggbc","content_hash":"1992acf7c464d446a1bd47c6a4280bd0d69b13dff0804fa8177e985efa997d4f","title":"Update documentation for merge driver auto-config","description":"Update documentation to reflect the new merge driver auto-configuration during `bd init`.\n\n**Files to update:**\n- README.md - Mention merge driver setup in initialization section\n- AGENTS.md - Update onboarding section about merge driver\n- Possibly QUICKSTART.md\n\n**Content:**\n- Explain what the merge driver does\n- Show --skip-merge-driver flag usage\n- Manual installation steps for post-init setup","status":"closed","priority":2,"issue_type":"task","created_at":"2025-11-05T19:27:04.155662-08:00","updated_at":"2025-11-05T19:29:55.188122-08:00","closed_at":"2025-11-05T19:29:55.188122-08:00","source_repo":".","dependencies":[{"issue_id":"bd-ggbc","depends_on_id":"bd-32nm","type":"discovered-from","created_at":"2025-11-05T19:27:04.156491-08:00","created_by":"daemon"}]}
@@ -303,7 +298,6 @@
 {"id":"bd-ktng","content_hash":"0a09f3e1549a70817f23aa57444811aaf18683ff9336944ff6e8c277ac5684b4","title":"Optimize CLI test suite - eliminate redundant git init calls","description":"Current: Each of 13 CLI tests calls git init (31s total). Solution: Use single test binary built once in init(), skip git operations where possible, or use mock filesystem.","status":"open","priority":2,"issue_type":"task","created_at":"2025-11-04T11:23:13.660276-08:00","updated_at":"2025-11-04T11:23:13.660276-08:00","source_repo":".","dependencies":[{"issue_id":"bd-ktng","depends_on_id":"bd-l5gq","type":"discovered-from","created_at":"2025-11-04T11:23:13.662102-08:00","created_by":"daemon"}]}
 {"id":"bd-l4b6","content_hash":"62f76d6f751783139b97ee4b08e1134f6154d0eb5696e0f78ce258f841c9738e","title":"Add tests for bd init --team wizard","description":"Write integration tests for the team wizard:\n- Test branch detection\n- Test sync branch creation\n- Test protected branch workflow\n- Test auto-sync configuration","status":"closed","priority":2,"issue_type":"task","created_at":"2025-11-05T18:58:18.192425-08:00","updated_at":"2025-11-06T20:06:49.22056-08:00","closed_at":"2025-11-06T19:55:39.687439-08:00","source_repo":"."}
 {"id":"bd-l5gq","content_hash":"b485239aea61b3265f1be077398e6cade0e35cb6049f5ba829adf4c3dab43f77","title":"Optimize test suite performance - cut runtime by 50%+","description":"## Problem\nTest suite takes ~20.8 seconds, with 95% of time spent in just 2 tests:\n- TestHashIDs_MultiCloneConverge: 11.08s (53%)\n- TestHashIDs_IdenticalContentDedup: 8.78s (42%)\n\nBoth tests in beads_hash_multiclone_test.go perform extensive Git operations (bare repos, multiple clones, sync rounds).\n\n## Goal\nCut total test time by at least 50% (to ~10 seconds or less).\n\n## Analysis\nTests already have some optimizations:\n- --shared --depth=1 --no-tags for fast cloning\n- Disabled hooks, gc, fsync\n- Support -short flag\n\n## Impact\n- Faster development feedback loop\n- Reduced CI costs and time\n- Better developer experience","status":"closed","priority":2,"issue_type":"epic","created_at":"2025-11-04T01:23:14.410648-08:00","updated_at":"2025-11-04T11:23:13.683213-08:00","closed_at":"2025-11-04T11:23:13.683213-08:00","source_repo":"."}
-{"id":"bd-la9d","content_hash":"298e5922cb0e6460d1cf14d2b7230c63403e72fcb511fb31d3fe2e2f241fd18a","title":"Blocking issue","description":"","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-07T19:07:02.01987-08:00","updated_at":"2025-11-07T23:21:44.923329-08:00","closed_at":"2025-11-07T23:21:44.923332-08:00","source_repo":"."}
 {"id":"bd-lwnt","content_hash":"ddfa247870eb3734ffa7a4d0da6fcd4a359d2b48e02d70aad8560ec4bc13afdc","title":"Test P1 priority","description":"","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-05T12:58:38.074112-08:00","updated_at":"2025-11-05T12:58:44.711763-08:00","closed_at":"2025-11-05T12:58:44.711763-08:00","source_repo":"."}
 {"id":"bd-m9th","content_hash":"eabc13aaa418ea35d1c9cf709cf5d7cc7df19c7afba31ade680d29056bb9699a","title":"Create Python adapter library","description":"Create beads_mail_adapter.py library that wraps Agent Mail HTTP calls with health checks and graceful degradation.\n\nAcceptance Criteria:\n- AgentMailAdapter class with health check on init\n- enabled flag auto-disables if server unreachable\n- All methods wrapped in try/catch (non-blocking failures)\n- Methods: reserve_issue(), release_issue(), notify(), check_inbox()\n- Environment-based configuration (AGENT_MAIL_URL, AGENT_MAIL_TOKEN)\n- Unit tests for enabled/disabled modes\n\nFile: lib/beads_mail_adapter.py","status":"closed","priority":1,"issue_type":"feature","created_at":"2025-11-07T22:42:28.60152-08:00","updated_at":"2025-11-08T00:11:02.746747-08:00","closed_at":"2025-11-08T00:11:02.746747-08:00","source_repo":".","dependencies":[{"issue_id":"bd-m9th","depends_on_id":"bd-4cyb","type":"blocks","created_at":"2025-11-07T22:42:28.602698-08:00","created_by":"daemon"}]}
 {"id":"bd-mlcz","content_hash":"c7a69a80bb7a3934692c11aca9bf33d38ab797ab86ca1b3ac2a1347bff39feac","title":"Implement bd migrate command","description":"Add bd migrate command to move issues between repos with filtering. Should support: filtering by status/priority/labels, dry-run mode, preserving dependencies, handling source_repo field updates.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-05T18:04:29.902151-08:00","updated_at":"2025-11-05T18:42:52.536951-08:00","closed_at":"2025-11-05T18:42:52.536951-08:00","source_repo":".","dependencies":[{"issue_id":"bd-mlcz","depends_on_id":"bd-8rd","type":"parent-child","created_at":"2025-11-05T18:04:39.072312-08:00","created_by":"daemon"}]}
@@ -311,7 +305,7 @@
 {"id":"bd-muls","content_hash":"7694cd3d43c83a758905922e7b88fc5b0b9100a74b8c841af469175f5643b8c2","title":"Install and test MCP Agent Mail locally","description":"Install MCP Agent Mail on a single development machine and verify basic functionality.\n\nAcceptance Criteria:\n- Server installed via one-line installer\n- Server running on port 8765\n- Can register a project via HTTP\n- Can register an agent identity\n- Web UI accessible at /mail","notes":"Tested local installation. Server runs on port 8765, web UI works. MCP API tool execution has errors - needs debugging. See /tmp/bd-muls-report.md for details.","status":"closed","priority":0,"issue_type":"task","created_at":"2025-11-07T22:41:59.896735-08:00","updated_at":"2025-11-07T23:14:59.1182-08:00","closed_at":"2025-11-07T23:14:59.1182-08:00","source_repo":"."}
 {"id":"bd-my64","content_hash":"8f4eb8056f81096e7090813f319b3aa996ada6dc5809d81305271d0584c2f364","title":"Pre-push hook and daemon export produce different JSONL","description":"After committing and pushing, git status shows .beads/beads.jsonl as dirty. Investigation shows:\n\n1. Pre-push hook ran successfully and exported DB → JSONL\n2. Push completed\n3. Shortly after, daemon exported DB → JSONL again with different content\n4. Diff shows comments added to old issues (bd-23a8, bd-6049, bd-87a0)\n\nTimeline:\n- Commit c731c45 \"Update beads JSONL\"\n- Pre-push hook exported JSONL\n- Push succeeded\n- Daemon PID 33314 exported again with different content\n\nQuestions:\n1. Did someone run a command between commit and daemon export?\n2. Is there a timing issue where pre-push hook doesn't capture all DB changes?\n3. Should pre-commit hook flush daemon changes before committing?\n\nThe comments appear to be from Nov 5 (created_at: 2025-11-05T08:38:46Z) but are only appearing in JSONL now. This suggests the DB had these comments but they weren't exported during pre-push.\n\nPossible causes:\n- Pre-push hook uses BEADS_NO_DAEMON=1 which might skip pending writes\n- Daemon has unflushed changes in memory\n- Race condition between pre-push export and daemon's periodic export","notes":"Improved fix based on oracle code review:\n1. Pre-push now flushes pending changes first (prevents debounce race)\n2. Uses git status --porcelain to catch all change types\n3. Handles both beads.jsonl and issues.jsonl\n4. Works even if bd not installed (git-only check)","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-06T18:49:54.570993-08:00","updated_at":"2025-11-06T19:01:14.549032-08:00","closed_at":"2025-11-06T18:57:42.710282-08:00","source_repo":"."}
 {"id":"bd-ndyz","content_hash":"98629cb6e905127858991beecd39aa298b2c83007d87d64dd3644b1af605e627","title":"GH#243: Recurring stale daemon.lock causes 5s delays","description":"User reports daemon.lock keeps becoming stale after running Claude with beads.\n\nSymptom:\n- bd ready takes 5 seconds (exact)\n- daemon.lock exists but socket is missing\n- bd daemons killall temporarily fixes it\n- Problem recurs after using beads with AI agents\n\nUser on v0.22.0, Macbook M2, 132 issues (89 closed)\n\nHypothesis: Daemon is crashing or exiting uncleanly during agent sessions, leaving stale lock file.\n\nNeed to:\n1. Add crash logging to daemon to understand why it's exiting\n2. Improve cleanup on daemon exit (ensure lock is always removed)\n3. Add automatic stale lock detection/cleanup\n4. Consider making daemon more resilient to crashes","design":"Root cause: 5s delay from slow RPC connect attempts when socket missing but clients retry with long timeouts. Lock file mechanism is fine (OS releases on crash), but missing socket + stale pid cause unnecessary connection attempts.\n\nKey insight: The lock itself isn't stale (OS-managed), but socket cleanup on crash is incomplete, leading clients to wait through full dial timeout.","notes":"Oracle analysis complete. Converting to epic with 5 focused sub-issues:\n1. RPC fast-fail with socket stat + short timeouts (P0)\n2. Standardize daemon detection with lock probe (P1)  \n3. Crash recovery improvements (P2)\n4. Self-heal stale artifacts (P2)\n5. Diagnostics and debugging (P3)","status":"closed","priority":0,"issue_type":"bug","created_at":"2025-11-07T16:32:23.576171-08:00","updated_at":"2025-11-07T22:07:17.347419-08:00","closed_at":"2025-11-07T21:29:56.009737-08:00","source_repo":"."}
-{"id":"bd-nemp","content_hash":"5d9cced609841d93d2a51b732976bbcb2376d95bd187c87137595dc65d40e187","title":"Measure git operation reduction","description":"Quantify the reduction in git operations (pulls, commits, pushes) when using Agent Mail for coordination.\n\nAcceptance Criteria:\n- Baseline: count git ops for 10 issues without Agent Mail\n- With Agent Mail: count git ops for 10 issues\n- Document reduction percentage\n- Verify 70-80% reduction claim\n- Measure impact on .git directory size growth\n\nSuccess Metric: ≥70% reduction in git operations","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-07T22:42:00.157334-08:00","updated_at":"2025-11-07T22:42:00.157334-08:00","source_repo":".","dependencies":[{"issue_id":"bd-nemp","depends_on_id":"bd-6hji","type":"blocks","created_at":"2025-11-07T23:03:53.131532-08:00","created_by":"daemon"},{"issue_id":"bd-nemp","depends_on_id":"bd-htfk","type":"blocks","created_at":"2025-11-07T23:03:53.200321-08:00","created_by":"daemon"}]}
+{"id":"bd-nemp","content_hash":"e926c907659faaa8fefc8433862fe145c187cdf8250ff0bb1c9721ca112f4fdb","title":"Measure git operation reduction","description":"Quantify the reduction in git operations (pulls, commits, pushes) when using Agent Mail for coordination.\n\nAcceptance Criteria:\n- Baseline: count git ops for 10 issues without Agent Mail\n- With Agent Mail: count git ops for 10 issues\n- Document reduction percentage\n- Verify 70-80% reduction claim\n- Measure impact on .git directory size growth\n\nSuccess Metric: ≥70% reduction in git operations","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-07T22:42:00.157334-08:00","updated_at":"2025-11-08T00:20:30.691721-08:00","closed_at":"2025-11-08T00:20:30.691721-08:00","source_repo":".","dependencies":[{"issue_id":"bd-nemp","depends_on_id":"bd-6hji","type":"blocks","created_at":"2025-11-07T23:03:53.131532-08:00","created_by":"daemon"},{"issue_id":"bd-nemp","depends_on_id":"bd-htfk","type":"blocks","created_at":"2025-11-07T23:03:53.200321-08:00","created_by":"daemon"}]}
 {"id":"bd-nf8w","content_hash":"b7c7980704c017ba234dc80e8fb3f57617e3e911fea0385b70ad9dbfdefd438a","title":"Latency test 1","description":"","status":"in_progress","priority":3,"issue_type":"task","created_at":"2025-11-08T00:04:20.573893-08:00","updated_at":"2025-11-08T00:04:20.611487-08:00","source_repo":"."}
 {"id":"bd-ng56","content_hash":"f570cf399d412baa9b9209bae41140668269513e2d2127c47ddee70fa173d79d","title":"bd-hv01: Three full JSONL reads on every sync (performance)","description":"Problem: computeAcceptedDeletions reads three JSONL files completely into memory (base, left, merged). For 1000 issues at 1KB each, this is 3MB read and 3000 JSON parse operations.\n\nImpact: Acceptable now (~20-35ms overhead) but will be slow for large repos (10k+ issues).\n\nPossible optimizations: single-pass streaming, memory-mapped files, binary format, incremental snapshots.\n\nFiles: cmd/bd/deletion_tracking.go:101-208","status":"closed","priority":3,"issue_type":"task","created_at":"2025-11-06T18:16:25.653076-08:00","updated_at":"2025-11-06T20:06:49.220818-08:00","closed_at":"2025-11-06T19:41:04.67733-08:00","source_repo":".","dependencies":[{"issue_id":"bd-ng56","depends_on_id":"bd-rbxi","type":"parent-child","created_at":"2025-11-06T18:19:15.148149-08:00","created_by":"daemon"}]}
 {"id":"bd-nl8z","content_hash":"e7cc9227066f5f44b10a0c934a787dc5e4d6bd68f7715067b3a98edd69ae88b4","title":"Documentation","description":"Complete documentation for Agent Mail integration to enable adoption.","status":"open","priority":1,"issue_type":"epic","created_at":"2025-11-07T22:42:37.969636-08:00","updated_at":"2025-11-07T22:42:37.969636-08:00","source_repo":".","dependencies":[{"issue_id":"bd-nl8z","depends_on_id":"bd-wfmw","type":"blocks","created_at":"2025-11-07T22:42:37.970621-08:00","created_by":"daemon"}]}
@@ -347,7 +341,7 @@
 {"id":"bd-vcg5","content_hash":"82933ce7e0add2ee5b5830b343785c3585151453c5c06243af2b1f2b934e72b2","title":"Daemon crash recovery: panic handler + socket cleanup","description":"Improve daemon cleanup on unexpected exit:\n1. Add top-level recover() in runDaemonLoop to capture panics\n2. Write daemon-error file with stack trace on panic\n3. Prefer return over os.Exit where possible (so defers run)\n4. In stopDaemon forced-kill path, also remove stale socket if present\n\nThis ensures better diagnostics and cleaner state after crashes.","status":"closed","priority":2,"issue_type":"task","created_at":"2025-11-07T16:42:12.733219-08:00","updated_at":"2025-11-07T22:07:17.347728-08:00","closed_at":"2025-11-07T21:17:15.94117-08:00","source_repo":".","dependencies":[{"issue_id":"bd-vcg5","depends_on_id":"bd-ndyz","type":"discovered-from","created_at":"2025-11-07T16:42:12.733889-08:00","created_by":"daemon"}]}
 {"id":"bd-vxdr","content_hash":"d188358987c7a7d444f9144a4a6cc5164eccd35b16325edba51dad104ab2a7f2","title":"Investigate database pollution - issue count anomalies","description":"Multiple repos showing inflated issue counts suggesting cross-repo pollution:\n- ~/src/dave/beads: 895 issues (675 open) - clearly polluted\n- ~/src/stevey/src/beads: 280 issues (expected ~209-220) - possibly polluted\n\nNeed to investigate:\n1. Source of pollution (multi-repo sync issues?)\n2. How many duplicate/foreign issues exist\n3. Whether recent sync operations caused cross-contamination\n4. How to clean up and prevent future pollution","notes":"Investigation findings:\n\n**Root cause identified:**\n- NOT cross-repo contamination\n- NOT automated test leakage (tests properly use t.TempDir())\n- Manual testing during template feature development (Nov 2-4)\n- Commit ba325a2: \"test issues were accidentally committed during template feature development\"\n\n**Database growth timeline:**\n- Nov 3: 19 issues (baseline)\n- Nov 2-5: +244 issues (massive development spike)\n- Nov 6-7: +40 issues (continued growth)\n- Current: 291 issues → 270 after cleanup\n\n**Test pollution breakdown:**\n- 21 issues matching \"Test \" prefix pattern\n- Most created Nov 2-5 during feature development\n- Pollution from manual `./bd create \"Test issue\"` commands in production workspace\n- All automated tests properly isolated with t.TempDir()\n\n**Cleanup completed:**\n- Ran scripts/cleanup-test-pollution.sh successfully\n- Removed 21 test issues\n- Database reduced from 291 → 270 issues (7.2% cleanup)\n- JSONL synced to git\n\n**Prevention strategy:**\n- Filed follow-up issue for prevention mechanisms\n- Script can be deleted once prevention is in place\n- Tests are already properly isolated - no code changes needed there","status":"closed","priority":0,"issue_type":"bug","created_at":"2025-11-06T22:34:40.137483-08:00","updated_at":"2025-11-07T16:07:28.274136-08:00","closed_at":"2025-11-07T16:04:02.199807-08:00","source_repo":"."}
 {"id":"bd-we4p","content_hash":"cd294027dd3105b1f32e306c52b8273a5720b749d1ac2cbd5e2fb36abffc0582","title":"Cache getMultiRepoJSONLPaths() result during sync to avoid redundant calls","description":"From bd-xo6b code review: getMultiRepoJSONLPaths() is called 3x per sync cycle.\n\n**Current behavior:**\ndaemon_sync.go calls getMultiRepoJSONLPaths() three times per sync:\n- Line 505: Snapshot capture before pull\n- Line 575: Merge/prune after pull\n- Line 613: Base snapshot update after import\n\n**Cost per call:**\n- Config lookup (likely cached, but still overhead)\n- Path construction: O(N) where N = number of repos\n- String allocations: (N + 1) × filepath.Join() calls\n\n**Total per sync:** 3N path constructions + 3 config lookups + 3 slice allocations\n\n**Impact:**\n- For N=3 repos: Negligible (\u003c 1ms)\n- For N=10 repos: Still minimal\n- For N=100+ repos: Wasteful\n\n**Solution:**\nCall once at sync start, reuse result:\n\n```go\nfunc createSyncFunc(...) func() {\n    return func() {\n        // ... existing setup ...\n        \n        // Call once at start\n        multiRepoPaths := getMultiRepoJSONLPaths()\n        \n        // Snapshot capture\n        if multiRepoPaths != nil {\n            for _, path := range multiRepoPaths {\n                if err := captureLeftSnapshot(path); err != nil { ... }\n            }\n        }\n        \n        // ... later ...\n        \n        // Merge/prune - reuse same paths\n        if multiRepoPaths != nil {\n            for _, path := range multiRepoPaths { ... }\n        }\n        \n        // ... later ...\n        \n        // Base snapshot update - reuse same paths\n        if multiRepoPaths != nil {\n            for _, path := range multiRepoPaths { ... }\n        }\n    }\n}\n```\n\n**Files:**\n- cmd/bd/daemon_sync.go:449-636 (createSyncFunc)\n\n**Note:** This is a performance optimization, not a correctness fix. Low priority unless multi-repo usage scales significantly.","status":"closed","priority":2,"issue_type":"chore","created_at":"2025-11-06T19:31:32.128674-08:00","updated_at":"2025-11-06T19:40:50.871176-08:00","closed_at":"2025-11-06T19:40:50.871176-08:00","source_repo":".","dependencies":[{"issue_id":"bd-we4p","depends_on_id":"bd-xo6b","type":"discovered-from","created_at":"2025-11-06T19:32:12.39754-08:00","created_by":"daemon"}]}
-{"id":"bd-wfmw","content_hash":"955b2ebdd5c9a07ad2f08b4592c0c493ed69313527c47f332413b5b45c22dbcf","title":"Integration Layer Implementation","description":"Build the adapter layer that makes Agent Mail optional and non-intrusive.","notes":"Progress: bd-m9th (Python adapter library) completed with full test coverage. Next: bd-fzbg (update python-agent example with Agent Mail integration).","status":"open","priority":1,"issue_type":"epic","created_at":"2025-11-07T22:42:09.356429-08:00","updated_at":"2025-11-08T00:15:02.593861-08:00","source_repo":".","dependencies":[{"issue_id":"bd-wfmw","depends_on_id":"bd-spmx","type":"blocks","created_at":"2025-11-07T22:42:09.357488-08:00","created_by":"daemon"}]}
+{"id":"bd-wfmw","content_hash":"4c761e0f53d327cc7ddcc12cdadc81c1811249fd109f82691eecf8e73d41b750","title":"Integration Layer Implementation","description":"Build the adapter layer that makes Agent Mail optional and non-intrusive.","notes":"Progress: bd-m9th (Python adapter library) completed with full test coverage. Next: bd-fzbg (update python-agent example with Agent Mail integration).","status":"closed","priority":1,"issue_type":"epic","created_at":"2025-11-07T22:42:09.356429-08:00","updated_at":"2025-11-08T00:20:30.888756-08:00","closed_at":"2025-11-08T00:20:30.888756-08:00","source_repo":".","dependencies":[{"issue_id":"bd-wfmw","depends_on_id":"bd-spmx","type":"blocks","created_at":"2025-11-07T22:42:09.357488-08:00","created_by":"daemon"}]}
 {"id":"bd-wgu4","content_hash":"31cf5cc105fee5de26f4c2756b8368c90b18eb5f65c656eb0d90f96b23daf21d","title":"Standardize daemon detection: use tryDaemonLock probe before RPC","description":"Before attempting RPC connection, call tryDaemonLock() to check if lock is held:\n- If lock NOT held: skip RPC attempt (no daemon running)\n- If lock IS held: proceed with RPC + short timeout\n\nThis is extremely cheap and eliminates unnecessary connection attempts.\n\nApply across all client entry points that probe for daemon.","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-07T16:42:12.709802-08:00","updated_at":"2025-11-07T20:15:23.282181-08:00","closed_at":"2025-11-07T20:15:23.282181-08:00","source_repo":".","dependencies":[{"issue_id":"bd-wgu4","depends_on_id":"bd-ndyz","type":"discovered-from","created_at":"2025-11-07T16:42:12.710564-08:00","created_by":"daemon"}]}
 {"id":"bd-wta","content_hash":"b72f31183e057a3ccb8b428f40475921570d47ed61b50d2bb4875829757d6b2c","title":"Add performance benchmarks for multi-repo hydration","description":"The contributor-workflow-analysis.md asserts sub-second queries (line 702) and describes smart caching via file mtime tracking (Decision #4, lines 584-618), but doesn't provide concrete performance benchmarks.\n\nVC's requirement (from VC feedback section):\n- Executor polls GetReadyWork() every 5-10 seconds\n- Queries must be sub-second (ideally \u003c100ms)\n- Smart caching must avoid re-parsing JSONLs on every query\n\nSuggested performance targets to validate:\n- File stat overhead: \u003c1ms per repo\n- Hydration (when needed): \u003c500ms for typical JSONL (\u003c25k)\n- Query (from cache): \u003c10ms\n- Total GetReadyWork(): \u003c100ms (VC's requirement)\n\nAlso test at scale:\n- N=1 repo (baseline)\n- N=3 repos (typical)\n- N=10 repos (edge case)\n\nThese benchmarks are critical for library consumers like VC that run automated polling loops.","acceptance_criteria":"- Performance benchmark suite created for multi-repo hydration\n- Benchmarks cover file stat, hydration, and query times\n- Tests at N=1, N=3, N=10 repo scales\n- Results documented in contributor-workflow-analysis.md\n- Performance targets met or issues filed for optimization","status":"closed","priority":2,"issue_type":"task","created_at":"2025-11-03T20:24:39.331528-08:00","updated_at":"2025-11-05T14:17:15.079226-08:00","closed_at":"2025-11-05T14:17:15.079226-08:00","source_repo":"."}
 {"id":"bd-ww0g","content_hash":"973e5e6eb58975fcbe80f804b69a900cde824af4b51243737ef5fca404d0b1c1","title":"MCP server: \"No workspace set\" and \"chunk longer than limit\" errors","description":"Two related errors reported in beads-mcp v0.21:\n\n**Error 1: \"No workspace set\" after successful set_context**\n```\n✓ Set beads context\n✗ list\n  Error calling tool 'list': No workspace set. Either provide workspace_root\n  parameter or call set_context() first.\n```\n\nHypothesis: Environment variable persistence issue between MCP tool calls, or ContextVar not being set correctly by @with_workspace decorator.\n\n**Error 2: \"Separator is found, but chunk is longer than limit\"**\n```\n✗ list\n  Error calling tool 'list': Separator is found, but chunk is longer than limit\n```\n\nHypothesis: MCP protocol output size limit exceeded. Large issue databases may produce JSON output that exceeds MCP stdio buffer limits.\n\nPlatform: Fedora 43, using copilot-cli with Sonnet 4.5\n\nWorkaround: CLI works fine (`bd list --status open --json`)","notes":"## Fixes Implemented\n\n**Issue 1: \"No workspace set\" after successful set_context** ✅ FIXED\n\nRoot cause: os.environ doesn't persist across MCP tool calls. When set_context() set BEADS_WORKING_DIR in os.environ, that change was lost on the next tool call.\n\nSolution:\n- Added module-level _workspace_context dict for persistent storage (server.py:51)\n- Modified set_context() to store in both persistent dict and os.environ (server.py:265-287)\n- Modified with_workspace() decorator to check persistent context first (server.py:129-133)\n- Updated where_am_i() to check persistent context (server.py:302-330)\n\n**Issue 2: \"chunk longer than limit\"** ✅ FIXED\n\nRoot cause: MCP stdio protocol has buffer limits. Large issue lists with full dependencies/dependents exceed this.\n\nSolution:\n- Reduced default list limit from 50 to 20 (server.py:356, models.py:122)\n- Reduced max list limit from 1000 to 100 (models.py:122)\n- Strip dependencies/dependents from list() and ready() responses (server.py:343-350, 368-373)\n- Full dependency details still available via show() command\n\n## Testing\n\n✅ Python syntax validated with py_compile\n✅ Changes are backward compatible\n✅ Persistent context falls back to os.environ for compatibility\n\nUsers should now be able to call set_context() once and have it persist across all subsequent tool calls. Large databases will no longer cause buffer overflow errors.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-07T14:32:18.315155-08:00","updated_at":"2025-11-07T21:02:55.470937-08:00","closed_at":"2025-11-07T16:53:46.929942-08:00","source_repo":"."}
@@ -360,6 +354,6 @@
 {"id":"bd-zbq2","content_hash":"56dfd7f2c09dafd232a1ae26063744c89a1ba317e50a3429ec19b73ee1402993","title":"bd export should verify JSONL line count matches database count","description":"After export completes, bd should verify that the JSONL file line count matches the number of issues exported. This would catch silent failures where the export appears to succeed but doesn't actually write all issues.\n\nReal-world scenario from VC project:\n- Ran direct SQL DELETE to remove 240 issues  \n- Ran 'bd export -o .beads/issues.jsonl'\n- No error shown, appeared to succeed\n- But JSONL file was not updated (still had old line count)\n- Later session found all 240 issues still in JSONL\n- Had to repeat the cleanup\n\nIf export had verified line count, it would have immediately shown:\n  Error: Export verification failed\n    Expected: 276 issues\n    JSONL file: 516 lines\n    Mismatch indicates export failed to write all issues\n\nThis is especially important because:\n1. JSONL is source of truth in git\n2. Silent export failures cause data inconsistency\n3. Users assume export succeeded if no error shown\n4. The verification is cheap (just count lines)\n\nImplementation:\n- After writing JSONL, count lines in file\n- Compare to len(exportedIDs)\n- If mismatch, remove temp file and return error\n- Show clear error message with both counts","design":"In cmd/bd/export.go, after atomic rename (line ~301):\n\n1. Count lines in final JSONL file:\n   - Read file and count newlines\n   - Or reuse countIssuesInJSONL() helper (already exists)\n\n2. Compare to len(exportedIDs)\n\n3. If mismatch:\n   - Log error with both counts\n   - Optionally: remove the bad JSONL file (or leave for debugging?)\n   - Return error (exit 1)\n\n4. Consider adding --skip-verify flag for edge cases\n\nEdge cases:\n- Partial line writes (corrupted file)\n- File system issues\n- Race conditions (another process modifying JSONL during export)\n\nThe countIssuesInJSONL() function already exists at line 20, can reuse it.","acceptance_criteria":"1. bd export verifies JSONL line count after write\n2. Clear error shown if mismatch detected\n3. Test case that simulates partial write failure\n4. Does not affect export performance significantly (line counting is fast)","status":"closed","priority":2,"issue_type":"feature","created_at":"2025-11-05T14:24:56.278249-08:00","updated_at":"2025-11-05T15:09:41.636141-08:00","closed_at":"2025-11-05T14:31:24.494885-08:00","source_repo":"."}
 {"id":"bd-zi1v","content_hash":"4d0cca61348e3bd289655f8ba349c7713efba973a76370bca14f448931f0c9fb","title":"Test Agent Mail server failure scenarios","description":"Verify graceful degradation across various failure modes.\n\nTest Cases:\n- Server never started\n- Server crashes during operation\n- Network partition (timeout)\n- Server returns 500 error\n- Invalid bearer token\n- SQLite corruption\n\nAcceptance Criteria:\n- Agents continue working in all scenarios\n- Clear log messages about degradation\n- No crashes or data loss\n- Beads JSONL remains consistent\n\nFile: tests/integration/test_mail_failures.py","status":"open","priority":1,"issue_type":"task","created_at":"2025-11-07T22:43:21.41983-08:00","updated_at":"2025-11-07T22:43:21.41983-08:00","source_repo":".","dependencies":[{"issue_id":"bd-zi1v","depends_on_id":"bd-fzbg","type":"blocks","created_at":"2025-11-07T22:43:21.420725-08:00","created_by":"daemon"}]}
 {"id":"bd-zkl","content_hash":"cb299b73577814802df3a99dc6c100be59b62cad83511abf65015ca3b66a2f33","title":"Add tests for daemon vs non-daemon parity in list filters","description":"After bd-o43 RPC integration, we need tests to verify daemon mode behaves identically to direct mode for all new filter flags.\n\nTest coverage needed:\n- Pattern matching: --title-contains, --desc-contains, --notes-contains\n- Date ranges: all 6 date filter flags (created/updated/closed after/before)\n- Empty/null checks: --empty-description, --no-assignee, --no-labels\n- Priority ranges: --priority-min, --priority-max\n- Status normalization: --status all vs no status flag\n- Date parsing: YYYY-MM-DD, RFC3339, and error cases\n- Backward compat: deprecated --label flag still works\n\nOracle review findings (bd-o43):\n- Date parsing should support multiple formats\n- Status 'all' should be treated as unset\n- NoLabels field was missing from RPC protocol\n- Error messages should be clear and actionable\n\nTest approach:\n- Create RPC integration tests in internal/rpc/server_issues_epics_test.go\n- Compare daemon client.List() vs direct store.SearchIssues() for same filters\n- Verify error messages match between modes\n- Test with real daemon instance, not just unit tests","status":"closed","priority":1,"issue_type":"task","created_at":"2025-11-05T00:43:53.369457-08:00","updated_at":"2025-11-05T00:55:31.318526-08:00","closed_at":"2025-11-05T00:55:31.318526-08:00","source_repo":".","dependencies":[{"issue_id":"bd-zkl","depends_on_id":"bd-o43","type":"discovered-from","created_at":"2025-11-05T00:43:53.371274-08:00","created_by":"daemon"}]}
-{"id":"bd-zo7o","content_hash":"048933c8ee05c9e6e9679eabd31c451abe46aba1fb07108542c8ba28ba47aef6","title":"Create multi-agent race condition test","description":"Automated test that runs 2+ agents simultaneously to verify collision prevention.\n\nAcceptance Criteria:\n- Script spawns 2 agents in parallel\n- Both try to claim same issue\n- Only one succeeds (via reservation)\n- Other agent skips to different work\n- Verify in JSONL that no duplicate claims\n- Test with Agent Mail enabled/disabled\n\nFile: tests/integration/test_agent_race.py\n\nSuccess Metric: Zero duplicate claims with Agent Mail, collisions without it","status":"open","priority":0,"issue_type":"task","created_at":"2025-11-07T22:43:21.360663-08:00","updated_at":"2025-11-07T22:43:21.360663-08:00","source_repo":".","dependencies":[{"issue_id":"bd-zo7o","depends_on_id":"bd-fzbg","type":"blocks","created_at":"2025-11-07T22:43:21.361571-08:00","created_by":"daemon"}]}
+{"id":"bd-zo7o","content_hash":"5dfdb66d88f6d950ef07ae225d11cc39e250f3f36eed2b6b62996d81dfca2bc4","title":"Create multi-agent race condition test","description":"Automated test that runs 2+ agents simultaneously to verify collision prevention.\n\nAcceptance Criteria:\n- Script spawns 2 agents in parallel\n- Both try to claim same issue\n- Only one succeeds (via reservation)\n- Other agent skips to different work\n- Verify in JSONL that no duplicate claims\n- Test with Agent Mail enabled/disabled\n\nFile: tests/integration/test_agent_race.py\n\nSuccess Metric: Zero duplicate claims with Agent Mail, collisions without it","status":"closed","priority":0,"issue_type":"task","created_at":"2025-11-07T22:43:21.360663-08:00","updated_at":"2025-11-08T00:34:14.40119-08:00","closed_at":"2025-11-08T00:34:14.40119-08:00","source_repo":".","dependencies":[{"issue_id":"bd-zo7o","depends_on_id":"bd-fzbg","type":"blocks","created_at":"2025-11-07T22:43:21.361571-08:00","created_by":"daemon"}]}
 {"id":"bd-zpnq","content_hash":"e96e651c806b522dfc4dfffe17f44e75a5a690bd6fcfe4c6471920e4a715103e","title":"Daemons don't exit when parent process dies, causing accumulation and race conditions","description":"Multiple daemon processes accumulate over time because daemons don't automatically stop when their parent process (e.g., coding agent) is killed. This causes:\n\n1. Race conditions: 8+ daemons watching same .beads/beads.db, each with own 30s debounce timer\n2. Git conflicts: Multiple daemons racing to commit/push .beads/issues.jsonl\n3. Resource waste: Orphaned daemons from sessions days/hours old still running\n\nExample: User had 8 daemons from multiple sessions (12:37AM, 7:20PM, 7:22PM, 7:47PM, 9:19PM yesterday + 9:54AM, 10:55AM today).\n\nSolutions to consider:\n1. Track parent PID and exit when parent dies\n2. Use single global daemon instead of per-session\n3. Document manual cleanup: pkill -f \"bd daemon\"\n4. Add daemon lifecycle management (auto-cleanup of stale daemons)","notes":"Implementation complete:\n\n1. Added ParentPID field to DaemonLockInfo struct (stored in daemon.lock JSON)\n2. Daemon now tracks parent PID via os.Getppid() at startup\n3. Both event loops (polling and event-driven) check parent process every 10 seconds\n4. Daemon gracefully exits if parent process dies (detected via isProcessRunning check)\n5. Handles edge cases:\n   - ParentPID=0: Older daemons without tracking (ignored)\n   - ParentPID=1: Adopted by init means parent died (exits)\n   - Otherwise checks if parent process is still running\n\nThe fix prevents daemon accumulation by ensuring orphaned daemons automatically exit within 10 seconds of parent death.","status":"closed","priority":1,"issue_type":"bug","created_at":"2025-11-07T18:48:41.65456-08:00","updated_at":"2025-11-07T18:53:26.382573-08:00","closed_at":"2025-11-07T18:53:26.382573-08:00","source_repo":"."}
 {"id":"bd-zwpw","content_hash":"f08173f44c8454bf15b265aa9d3242004e7ee2bc25867b02676746154a9cc6fe","title":"Test dependency child","description":"","status":"closed","priority":2,"issue_type":"task","created_at":"2025-11-05T11:23:05.998311-08:00","updated_at":"2025-11-05T11:23:30.389454-08:00","closed_at":"2025-11-05T11:23:30.389454-08:00","source_repo":".","dependencies":[{"issue_id":"bd-zwpw","depends_on_id":"bd-k0j9","type":"blocks","created_at":"2025-11-05T11:23:05.998981-08:00","created_by":"daemon"}]}
diff --git a/examples/python-agent/agent.py b/examples/python-agent/agent.py
index 851430df..9f8ee81e 100755
--- a/examples/python-agent/agent.py
+++ b/examples/python-agent/agent.py
@@ -8,19 +8,34 @@ This demonstrates how an agent can:
 3. Discover new issues during work
 4. Link discoveries back to parent tasks
 5. Complete work and move on
+6. Coordinate with other agents via Agent Mail (optional)
 """
 
 import json
 import subprocess
 import sys
+import os
+from pathlib import Path
 from typing import Optional
 
+# Add lib directory to path for beads_mail_adapter
+lib_path = Path(__file__).parent.parent.parent / "lib"
+sys.path.insert(0, str(lib_path))
+
+from beads_mail_adapter import AgentMailAdapter
+
 
 class BeadsAgent:
     """Simple agent that manages tasks using bd."""
 
     def __init__(self):
         self.current_task = None
+        self.mail = AgentMailAdapter()
+        
+        if self.mail.enabled:
+            print(f"📬 Agent Mail enabled (agent: {self.mail.agent_name})")
+        else:
+            print("📭 Agent Mail disabled (Beads-only mode)")
 
     def run_bd(self, *args) -> dict:
         """Run bd command and parse JSON output."""
@@ -32,7 +47,20 @@ class BeadsAgent:
         return {}
 
     def find_ready_work(self) -> Optional[dict]:
-        """Find the highest priority ready work."""
+        """Find the highest priority ready work.
+        
+        Integration Point 1: Check inbox before finding work.
+        """
+        # Check inbox for notifications from other agents
+        messages = self.mail.check_inbox()
+        if messages:
+            print(f"📨 Received {len(messages)} messages:")
+            for msg in messages:
+                event_type = msg.get("event_type", "unknown")
+                payload = msg.get("payload", {})
+                from_agent = msg.get("from_agent", "unknown")
+                print(f"   • {event_type} from {from_agent}: {payload}")
+        
         ready = self.run_bd("ready", "--limit", "1")
 
         if isinstance(ready, list) and len(ready) > 0:
@@ -40,9 +68,27 @@ class BeadsAgent:
         return None
 
     def claim_task(self, issue_id: str) -> dict:
-        """Claim a task by setting status to in_progress."""
+        """Claim a task by setting status to in_progress.
+        
+        Integration Point 2: Reserve issue before claiming.
+        Integration Point 3: Notify other agents of status change.
+        """
+        # Reserve the issue to prevent conflicts with other agents
+        if not self.mail.reserve_issue(issue_id):
+            print(f"⚠️  Failed to reserve {issue_id} - already claimed by another agent")
+            return {}
+        
         print(f"📋 Claiming task: {issue_id}")
-        return self.run_bd("update", issue_id, "--status", "in_progress")
+        result = self.run_bd("update", issue_id, "--status", "in_progress")
+        
+        # Notify other agents of status change
+        self.mail.notify("status_changed", {
+            "issue_id": issue_id,
+            "status": "in_progress",
+            "agent": self.mail.agent_name
+        })
+        
+        return result
 
     def create_issue(self, title: str, description: str = "",
                      priority: int = 2, issue_type: str = "task") -> dict:
@@ -62,9 +108,24 @@ class BeadsAgent:
         )
 
     def complete_task(self, issue_id: str, reason: str = "Completed"):
-        """Mark task as complete."""
+        """Mark task as complete.
+        
+        Integration Point 4: Release reservation and notify completion.
+        """
         print(f"✅ Completing task: {issue_id} - {reason}")
-        return self.run_bd("close", issue_id, "--reason", reason)
+        result = self.run_bd("close", issue_id, "--reason", reason)
+        
+        # Notify other agents of completion
+        self.mail.notify("issue_completed", {
+            "issue_id": issue_id,
+            "reason": reason,
+            "agent": self.mail.agent_name
+        })
+        
+        # Release the reservation
+        self.mail.release_issue(issue_id)
+        
+        return result
 
     def simulate_work(self, issue: dict) -> bool:
         """Simulate doing work on an issue.
diff --git a/tests/integration/README.md b/tests/integration/README.md
new file mode 100644
index 00000000..3cff9d13
--- /dev/null
+++ b/tests/integration/README.md
@@ -0,0 +1,42 @@
+# Integration Tests
+
+This directory contains integration tests for bd (beads) that test end-to-end functionality.
+
+## Tests
+
+### test_agent_race.py
+
+Multi-agent race condition test that validates collision prevention with Agent Mail.
+
+**What it tests:**
+- Multiple agents simultaneously attempting to claim the same issue
+- WITH Agent Mail: Only one agent succeeds (via reservation)
+- WITHOUT Agent Mail: Multiple agents may succeed (collision)
+- Verification via JSONL that no duplicate claims occur
+
+**Prerequisites:**
+- bd installed: `go install github.com/steveyegge/beads/cmd/bd@latest`
+- Agent Mail server running (optional, for full test suite):
+  ```bash
+  cd ~/src/mcp_agent_mail
+  source .venv/bin/activate
+  uv run python -m mcp_agent_mail.cli serve-http
+  ```
+
+**Running:**
+```bash
+python3 tests/integration/test_agent_race.py
+```
+
+**Expected results:**
+- **WITH Agent Mail running:** Test 1 passes (only 1 claim), Test 2 shows collision, Test 3 passes
+- **WITHOUT Agent Mail running:** All tests demonstrate collision (expected behavior without reservation system)
+
+## Adding New Tests
+
+Integration tests should:
+1. Use temporary workspaces (cleaned up automatically)
+2. Test real bd CLI commands, not just internal APIs
+3. Verify behavior in `.beads/issues.jsonl` when relevant
+4. Clean up resources in `finally` blocks
+5. Provide clear output showing what's being tested
diff --git a/tests/integration/test_agent_race.py b/tests/integration/test_agent_race.py
new file mode 100755
index 00000000..648ee7f4
--- /dev/null
+++ b/tests/integration/test_agent_race.py
@@ -0,0 +1,414 @@
+#!/usr/bin/env python3
+"""
+Multi-agent race condition test for bd (beads) issue tracker.
+
+Tests verify that when 2+ agents simultaneously try to claim the same issue:
+1. WITH Agent Mail: Only one agent succeeds (via reservation), others skip gracefully
+2. WITHOUT Agent Mail: Both agents may succeed (demonstrating the collision problem)
+
+This test validates the collision prevention mechanism provided by Agent Mail.
+"""
+
+import json
+import subprocess
+import tempfile
+import shutil
+import os
+import sys
+import time
+from pathlib import Path
+from multiprocessing import Process, Queue
+from typing import List, Tuple
+
+# Add lib directory for beads_mail_adapter
+lib_path = Path(__file__).parent.parent.parent / "lib"
+sys.path.insert(0, str(lib_path))
+
+from beads_mail_adapter import AgentMailAdapter
+
+
+class RaceTestAgent:
+    """Minimal agent implementation for race condition testing."""
+    
+    def __init__(self, agent_name: str, workspace: str, mail_enabled: bool = True):
+        self.agent_name = agent_name
+        self.workspace = workspace
+        self.mail_enabled = mail_enabled
+        
+        # Initialize Agent Mail adapter
+        if mail_enabled:
+            self.mail = AgentMailAdapter(agent_name=agent_name)
+        else:
+            self.mail = None
+    
+    def run_bd(self, *args) -> dict:
+        """Run bd command in the test workspace."""
+        cmd = ["bd"] + list(args) + ["--json"]
+        result = subprocess.run(
+            cmd,
+            cwd=self.workspace,
+            capture_output=True,
+            text=True
+        )
+        
+        if result.returncode != 0:
+            return {"error": result.stderr}
+        
+        if result.stdout.strip():
+            try:
+                return json.loads(result.stdout)
+            except json.JSONDecodeError:
+                return {"error": "Invalid JSON", "output": result.stdout}
+        return {}
+    
+    def try_claim_issue(self, issue_id: str) -> Tuple[bool, str]:
+        """
+        Attempt to claim an issue.
+        
+        Returns:
+            (success: bool, message: str)
+        """
+        # Integration Point 2: Reserve before claiming (if Agent Mail enabled)
+        if self.mail and self.mail.enabled:
+            reserved = self.mail.reserve_issue(issue_id)
+            if not reserved:
+                return False, f"Reservation failed for {issue_id}"
+        
+        # Claim the issue
+        result = self.run_bd("update", issue_id, "--status", "in_progress")
+        
+        if "error" in result:
+            if self.mail and self.mail.enabled:
+                self.mail.release_issue(issue_id)
+            return False, f"Update failed: {result['error']}"
+        
+        return True, f"Successfully claimed {issue_id}"
+    
+    def release_issue(self, issue_id: str):
+        """Release an issue after claiming."""
+        if self.mail and self.mail.enabled:
+            self.mail.release_issue(issue_id)
+
+
+def agent_worker(agent_name: str, workspace: str, target_issue_id: str, 
+                 mail_enabled: bool, result_queue: Queue):
+    """
+    Worker function for multiprocessing.
+    
+    Each worker tries to claim the same issue. Result is put in queue.
+    """
+    try:
+        agent = RaceTestAgent(agent_name, workspace, mail_enabled)
+        
+        # Small random delay to increase likelihood of collision
+        time.sleep(0.01 * hash(agent_name) % 10)
+        
+        success, message = agent.try_claim_issue(target_issue_id)
+        
+        result_queue.put({
+            "agent": agent_name,
+            "success": success,
+            "message": message,
+            "mail_enabled": mail_enabled
+        })
+    except Exception as e:
+        result_queue.put({
+            "agent": agent_name,
+            "success": False,
+            "message": f"Exception: {str(e)}",
+            "mail_enabled": mail_enabled
+        })
+
+
+def run_race_test(num_agents: int, mail_enabled: bool) -> List[dict]:
+    """
+    Run a race test with N agents trying to claim the same issue.
+    
+    Args:
+        num_agents: Number of agents to spawn
+        mail_enabled: Whether Agent Mail is enabled
+    
+    Returns:
+        List of result dicts from each agent
+    """
+    # Create temporary workspace
+    workspace = tempfile.mkdtemp(prefix="bd-race-test-")
+    
+    try:
+        # Initialize bd in workspace
+        subprocess.run(
+            ["bd", "init", "--quiet", "--prefix", "test"],
+            cwd=workspace,
+            check=True,
+            capture_output=True
+        )
+        
+        # Create a test issue
+        result = subprocess.run(
+            ["bd", "create", "Contested issue", "-p", "1", "--json"],
+            cwd=workspace,
+            capture_output=True,
+            text=True,
+            check=True
+        )
+        issue_data = json.loads(result.stdout)
+        issue_id = issue_data["id"]
+        
+        # Spawn agents in parallel
+        result_queue = Queue()
+        processes = []
+        
+        for i in range(num_agents):
+            agent_name = f"agent-{i+1}"
+            p = Process(
+                target=agent_worker,
+                args=(agent_name, workspace, issue_id, mail_enabled, result_queue)
+            )
+            processes.append(p)
+        
+        # Start all processes simultaneously
+        start_time = time.time()
+        for p in processes:
+            p.start()
+        
+        # Wait for completion
+        for p in processes:
+            p.join(timeout=10)
+        
+        elapsed = time.time() - start_time
+        
+        # Collect results
+        results = []
+        while not result_queue.empty():
+            results.append(result_queue.get())
+        
+        # Verify JSONL for duplicate claims
+        jsonl_path = Path(workspace) / ".beads" / "issues.jsonl"
+        jsonl_claims = verify_jsonl_claims(jsonl_path, issue_id)
+        
+        return {
+            "issue_id": issue_id,
+            "agents": results,
+            "elapsed_seconds": elapsed,
+            "jsonl_status_changes": jsonl_claims,
+            "mail_enabled": mail_enabled
+        }
+    
+    finally:
+        # Cleanup
+        shutil.rmtree(workspace, ignore_errors=True)
+
+
+def verify_jsonl_claims(jsonl_path: Path, issue_id: str) -> List[dict]:
+    """
+    Parse JSONL and count how many times the issue status was changed to in_progress.
+    
+    Returns list of status change events.
+    """
+    if not jsonl_path.exists():
+        return []
+    
+    status_changes = []
+    
+    with open(jsonl_path) as f:
+        for line in f:
+            if not line.strip():
+                continue
+            
+            try:
+                record = json.loads(line)
+                if record.get("id") == issue_id and record.get("status") == "in_progress":
+                    status_changes.append({
+                        "updated_at": record.get("updated_at"),
+                        "assignee": record.get("assignee")
+                    })
+            except json.JSONDecodeError:
+                continue
+    
+    return status_changes
+
+
+def test_agent_race_with_mail():
+    """Test that WITH Agent Mail, only one agent succeeds."""
+    print("\n" + "="*70)
+    print("TEST 1: Race condition WITH Agent Mail (collision prevention)")
+    print("="*70)
+    
+    num_agents = 3
+    result = run_race_test(num_agents, mail_enabled=True)
+    
+    # Analyze results
+    successful_agents = [a for a in result["agents"] if a["success"]]
+    failed_agents = [a for a in result["agents"] if not a["success"]]
+    
+    print(f"\n📊 Results ({result['elapsed_seconds']:.3f}s):")
+    print(f"   • Total agents: {num_agents}")
+    print(f"   • Successful claims: {len(successful_agents)}")
+    print(f"   • Failed claims: {len(failed_agents)}")
+    print(f"   • JSONL status changes: {len(result['jsonl_status_changes'])}")
+    
+    for agent in result["agents"]:
+        status = "✅" if agent["success"] else "❌"
+        print(f"   {status} {agent['agent']}: {agent['message']}")
+    
+    # Verify: Only one agent should succeed
+    assert len(successful_agents) == 1, \
+        f"Expected 1 successful claim, got {len(successful_agents)}"
+    
+    # Verify: JSONL should have exactly 1 in_progress status
+    assert len(result['jsonl_status_changes']) == 1, \
+        f"Expected 1 JSONL status change, got {len(result['jsonl_status_changes'])}"
+    
+    print("\n✅ PASS: Agent Mail prevented duplicate claims")
+    return True
+
+
+def test_agent_race_without_mail():
+    """Test that WITHOUT Agent Mail, multiple agents may succeed (collision)."""
+    print("\n" + "="*70)
+    print("TEST 2: Race condition WITHOUT Agent Mail (collision demonstration)")
+    print("="*70)
+    print("⚠️  Note: This test may occasionally pass if timing prevents collision")
+    
+    num_agents = 3
+    result = run_race_test(num_agents, mail_enabled=False)
+    
+    # Analyze results
+    successful_agents = [a for a in result["agents"] if a["success"]]
+    failed_agents = [a for a in result["agents"] if not a["success"]]
+    
+    print(f"\n📊 Results ({result['elapsed_seconds']:.3f}s):")
+    print(f"   • Total agents: {num_agents}")
+    print(f"   • Successful claims: {len(successful_agents)}")
+    print(f"   • Failed claims: {len(failed_agents)}")
+    print(f"   • JSONL status changes: {len(result['jsonl_status_changes'])}")
+    
+    for agent in result["agents"]:
+        status = "✅" if agent["success"] else "❌"
+        print(f"   {status} {agent['agent']}: {agent['message']}")
+    
+    # Without Agent Mail, we expect potential for duplicates
+    # (though timing may occasionally prevent it)
+    if len(successful_agents) > 1:
+        print(f"\n⚠️  EXPECTED: Multiple agents ({len(successful_agents)}) claimed same issue")
+        print("   This demonstrates the collision problem Agent Mail prevents")
+    else:
+        print("\n⚠️  NOTE: Only one agent succeeded (timing prevented collision this run)")
+        print("   Without Agent Mail, collisions are possible but not guaranteed")
+    
+    return True
+
+
+def test_agent_race_stress_test():
+    """Stress test with many agents."""
+    print("\n" + "="*70)
+    print("TEST 3: Stress test with 10 agents (Agent Mail enabled)")
+    print("="*70)
+    
+    num_agents = 10
+    result = run_race_test(num_agents, mail_enabled=True)
+    
+    successful_agents = [a for a in result["agents"] if a["success"]]
+    
+    print(f"\n📊 Results ({result['elapsed_seconds']:.3f}s):")
+    print(f"   • Total agents: {num_agents}")
+    print(f"   • Successful claims: {len(successful_agents)}")
+    print(f"   • JSONL status changes: {len(result['jsonl_status_changes'])}")
+    
+    # Verify: Exactly one winner
+    assert len(successful_agents) == 1, \
+        f"Expected 1 successful claim, got {len(successful_agents)}"
+    assert len(result['jsonl_status_changes']) == 1, \
+        f"Expected 1 JSONL status change, got {len(result['jsonl_status_changes'])}"
+    
+    print(f"\n✅ PASS: Only {successful_agents[0]['agent']} succeeded")
+    return True
+
+
+def check_agent_mail_server() -> bool:
+    """Check if Agent Mail server is running."""
+    try:
+        import urllib.request
+        req = urllib.request.Request("http://localhost:8765/api/health")
+        with urllib.request.urlopen(req, timeout=1) as response:
+            return response.status == 200
+    except:
+        return False
+
+
+def main():
+    """Run all race condition tests."""
+    print("🧪 Multi-Agent Race Condition Test Suite")
+    print("Testing collision prevention with Agent Mail")
+    
+    try:
+        # Check if bd is available
+        subprocess.run(["bd", "--version"], capture_output=True, check=True)
+    except (subprocess.CalledProcessError, FileNotFoundError):
+        print("❌ ERROR: bd command not found")
+        print("   Install: go install github.com/steveyegge/beads/cmd/bd@latest")
+        sys.exit(1)
+    
+    # Check if Agent Mail server is running
+    agent_mail_running = check_agent_mail_server()
+    if not agent_mail_running:
+        print("\n⚠️  WARNING: Agent Mail server is not running")
+        print("   Tests will fall back to beads-only mode (demonstrating collision)")
+        print("\n   To enable full collision prevention testing:")
+        print("   $ cd ~/src/mcp_agent_mail")
+        print("   $ source .venv/bin/activate")
+        print("   $ uv run python -m mcp_agent_mail.cli serve-http")
+        print()
+        
+        # Check if running in non-interactive mode (CI/automation)
+        if not sys.stdin.isatty():
+            print("   Running in non-interactive mode, continuing with tests...")
+        else:
+            print("   Press Enter to continue or Ctrl+C to exit")
+            try:
+                input()
+            except KeyboardInterrupt:
+                print("\n\n👋 Exiting - start Agent Mail server and try again")
+                sys.exit(0)
+    else:
+        print("\n✅ Agent Mail server is running on http://localhost:8765")
+    
+    # Run tests
+    tests = [
+        ("Agent Mail enabled (collision prevention)", test_agent_race_with_mail),
+        ("Agent Mail disabled (collision demonstration)", test_agent_race_without_mail),
+        ("Stress test (10 agents)", test_agent_race_stress_test),
+    ]
+    
+    passed = 0
+    failed = 0
+    
+    for name, test_func in tests:
+        try:
+            if test_func():
+                passed += 1
+        except AssertionError as e:
+            print(f"\n❌ FAIL: {name}")
+            print(f"   {e}")
+            failed += 1
+        except Exception as e:
+            print(f"\n💥 ERROR in {name}: {e}")
+            failed += 1
+    
+    # Summary
+    print("\n" + "="*70)
+    print("SUMMARY")
+    print("="*70)
+    print(f"✅ Passed: {passed}/{len(tests)}")
+    print(f"❌ Failed: {failed}/{len(tests)}")
+    
+    if failed == 0:
+        print("\n🎉 All tests passed!")
+        sys.exit(0)
+    else:
+        print(f"\n⚠️  {failed} test(s) failed")
+        sys.exit(1)
+
+
+if __name__ == "__main__":
+    main()