bd daemon sync: 2026-01-11 08:28:45

.beads/issues.jsonl

@@ -1248,6 +1248,7 @@
 {"id":"bd-ii8ug","title":"Session ended: gt-beads-refinery","status":"closed","priority":2,"issue_type":"event","owner":"steve.yegge@gmail.com","created_at":"2026-01-11T05:08:11.390419-08:00","created_by":"beads/refinery","updated_at":"2026-01-11T05:08:11.459049-08:00","closed_at":"2026-01-11T05:08:11.459049-08:00","close_reason":"auto-closed session cost wisp","ephemeral":true}
 {"id":"bd-iic1","title":"Phase 2.2: Switch bdt storage to TOON format","description":"Currently bdt stores issues in JSONL format in issues.toon file. Phase 2.2 must implement actual TOON format storage - this is the fundamental goal of the bdtoon project.\n\n## Current State (Phase 2.1)\n- issues.toon stores JSONL (intermediate format)\n- --toon flag allows output in TOON format for LLM consumption\n- Problem: We're not actually using TOON as the fundamental storage format\n\n## Required Work (Phase 2.2)\n1. Switch issue file I/O to write TOON format instead of JSONL\n   - Update cmd/bdt/storage.go to use EncodeTOON for writing\n   - Update cmd/bdt/storage.go to decode TOON (currently decodes JSON)\n   - Ensure round-trip: write TOON → read TOON → write TOON is byte-identical\n\n2. Update command implementations\n   - cmd/bdt/create.go: Write newly created issues to TOON format\n   - cmd/bdt/list.go: Read issues from TOON format\n   - cmd/bdt/show.go: Read from TOON format\n   - cmd/bdt/import.go: Convert imported JSONL to TOON\n   - cmd/bdt/export.go: Export TOON to JSONL (for bd compatibility)\n\n3. Implement TOON parser that handles gotoon's encoder-only limitation\n   - Since gotoon doesn't decode TOON, need custom TOON→JSON decoder\n   - OR continue storing TOON but decoding via intermediate JSON conversion\n\n4. Git merge driver optimization\n   - TOON is line-oriented, better for 3-way merges than binary formats\n   - Configure git merge driver for .toon files\n\n5. Comprehensive testing\n   - Round-trip tests: Issue → TOON → storage → read → Issue\n   - Merge conflict resolution tests with TOON format\n   - Large issue set performance tests\n\n## Success Criteria\n- issues.toon stores actual TOON format (not JSONL)\n- bdt list reads from TOON file\n- bdt create writes to TOON file\n- Round-trip: create issue → list → show returns identical data\n- All 65+ tests still passing\n- Performance comparable to JSONL storage","status":"closed","priority":1,"issue_type":"task","created_at":"2025-12-19T14:05:41.394964404-07:00","updated_at":"2025-12-19T14:37:17.879612634-07:00","closed_at":"2025-12-19T14:37:17.879612634-07:00"}
 {"id":"bd-ik1b","title":"Add --validate flag to bd create","description":"Opt-in strict mode that fails creation if required sections are missing. Uses ValidateTemplate() under the hood.","status":"closed","priority":3,"issue_type":"task","created_at":"2026-01-01T11:19:09.036754-08:00","created_by":"beads/crew/grip","updated_at":"2026-01-04T15:22:08.701283-08:00","closed_at":"2026-01-01T14:20:06.932309-08:00","close_reason":"Implemented --validate flag for bd create command","dependencies":[{"issue_id":"bd-ik1b","depends_on_id":"bd-ou35","type":"parent-child","created_at":"2026-01-01T11:19:22.754415-08:00","created_by":"beads/crew/grip"},{"issue_id":"bd-ik1b","depends_on_id":"bd-615z","type":"blocks","created_at":"2026-01-01T11:19:23.964595-08:00","created_by":"beads/crew/grip"}]}
+{"id":"bd-ikamv","title":"Session ended: gt-beads-refinery","status":"closed","priority":2,"issue_type":"event","owner":"steve.yegge@gmail.com","created_at":"2026-01-11T08:28:44.796775-08:00","created_by":"beads/refinery","updated_at":"2026-01-11T08:28:44.861913-08:00","closed_at":"2026-01-11T08:28:44.861913-08:00","close_reason":"auto-closed session cost wisp","ephemeral":true}
 {"id":"bd-ilfo1","title":"Closed gate cleanup/pruning mechanism","description":"Closed gates accumulate over time and never get cleaned up. The SearchIssues query for closed gates will grow unbounded. Options: (1) Add --since filter, (2) Automatic pruning of old closed gates, (3) Tombstone old gates after N days.","status":"open","priority":4,"issue_type":"task","created_at":"2026-01-08T21:32:19.768359-08:00","created_by":"beads/crew/emma","updated_at":"2026-01-08T21:32:19.768359-08:00","dependencies":[{"issue_id":"bd-ilfo1","depends_on_id":"bd-ka761","type":"discovered-from","created_at":"2026-01-08T21:32:28.003567-08:00","created_by":"beads/crew/emma"}]}
 {"id":"bd-imi7w","title":"Schema Readiness: Pre-Federation Schema Changes","description":"Track schema changes needed in Beads BEFORE federation features are implemented.\n\n## Context\n\nBeads is a multi-orchestrator work tracker. Schema changes made NOW are cheap; changes made AFTER production adoption are expensive.\n\n## Design Principles\n\n1. **Beads is multi-orchestrator** - Nothing specific to any single orchestrator\n2. **Progressive enhancement** - New fields are optional, backwards compatible\n3. **Owner vs Executor** - Human identity (owner) distinct from agent identity (executor)\n4. **Git as ledger** - Work history IS the source of truth\n\n## Success Criteria\n\n- [ ] All Priority 1 fields implemented\n- [ ] URI scheme is protocol-agnostic\n- [ ] Migration path documented\n- [ ] No breaking changes to existing beads","status":"closed","priority":1,"issue_type":"epic","created_at":"2026-01-10T16:33:12.482232-08:00","created_by":"gastown/crew/max","updated_at":"2026-01-10T20:36:39.472367-08:00","closed_at":"2026-01-10T20:36:39.472367-08:00","close_reason":"All 8 schema changes implemented and consolidated: owner, crystallizes, work_type, hop:// URI, quality_score, source_system, delegated-from edge, attests edge. Migrations 036-040 created. Tests passing."}
 {"id":"bd-imj","title":"Deletion propagation via deletions manifest","description":"## Problem\n\nWhen `bd cleanup -f` or `bd delete` removes issues in one clone, those deletions don't propagate to other clones. The import logic only creates/updates, never deletes. This causes \"resurrection\" where deleted issues reappear.\n\n## Root Cause\n\nImport sees DB issues not in JSONL and assumes they're \"local unpushed work\" rather than \"intentionally deleted upstream.\"\n\n## Solution: Deletions Manifest\n\nAdd `.beads/deletions.jsonl` - an append-only log of deleted issue IDs with metadata.\n\n### Format\n```jsonl\n{\"id\":\"bd-xxx\",\"ts\":\"2025-11-25T10:00:00Z\",\"by\":\"stevey\"}\n{\"id\":\"bd-yyy\",\"ts\":\"2025-11-25T10:05:00Z\",\"by\":\"claude\",\"reason\":\"duplicate of bd-zzz\"}\n```\n\n### Fields\n- `id`: Issue ID (required)\n- `ts`: ISO 8601 UTC timestamp (required)\n- `by`: Actor who deleted (required)\n- `reason`: Optional context (\"cleanup\", \"duplicate of X\", etc.)\n\n### Import Logic\n```\nFor each DB issue not in JSONL:\n  1. Check deletions manifest → if found, delete from DB\n  2. Fallback: check git history → if found, delete + backfill manifest\n  3. Neither → keep (local unpushed work)\n```\n\n### Conflict Resolution\nSimultaneous deletions from multiple clones are handled naturally:\n- Append-only design means both clones append their deletion records\n- On merge, file contains duplicate entries (same ID, different timestamps)\n- `LoadDeletions` deduplicates by ID (keeps any/first entry)\n- Result: deletion propagates correctly, duplicates are harmless\n\n### Pruning Policy\n- Default retention: 7 days (configurable via `deletions.retention_days`)\n- Auto-compact during `bd sync` is **opt-in** (disabled by default)\n- Hard cap: `deletions.max_entries` (default 50000)\n- Git fallback handles pruned entries (self-healing)\n\n### Self-Healing\nWhen git fallback catches a resurrection (pruned entry), it backfills the manifest. One-time git scan cost, then fast again.\n\n### Size Estimates\n- ~80 bytes/entry\n- 7-day retention with 100 deletions/day = ~56KB\n- Git compressed: ~10KB\n\n## Benefits\n- ✅ Deletions propagate across clones\n- ✅ O(1) lookup (no git scan in normal case)\n- ✅ Works in shallow clones\n- ✅ Survives history rewrite\n- ✅ Audit trail (who deleted what when)\n- ✅ Self-healing via git fallback\n- ✅ Bounded size via time-based pruning\n\n## References\n- Investigation session: 2025-11-25\n- Related: bd-2q6d (stale database warnings)","status":"closed","priority":0,"issue_type":"epic","created_at":"2025-11-25T09:56:01.98027-08:00","updated_at":"2025-11-25T16:36:27.965168-08:00","closed_at":"2025-11-25T16:36:27.965168-08:00","dependencies":[{"issue_id":"bd-imj","depends_on_id":"bd-qsm","type":"blocks","created_at":"2025-11-25T09:57:42.821911-08:00","created_by":"daemon"},{"issue_id":"bd-imj","depends_on_id":"bd-x2i","type":"blocks","created_at":"2025-11-25T09:57:42.851712-08:00","created_by":"daemon"},{"issue_id":"bd-imj","depends_on_id":"bd-44e","type":"blocks","created_at":"2025-11-25T09:57:42.88154-08:00","created_by":"daemon"},{"issue_id":"bd-imj","depends_on_id":"bd-bhd","type":"blocks","created_at":"2025-11-25T14:56:23.675787-08:00","created_by":"daemon"},{"issue_id":"bd-imj","depends_on_id":"bd-bgs","type":"blocks","created_at":"2025-11-25T14:56:23.744648-08:00","created_by":"daemon"},{"issue_id":"bd-imj","depends_on_id":"bd-f0n","type":"blocks","created_at":"2025-11-25T14:56:23.80649-08:00","created_by":"daemon"},{"issue_id":"bd-imj","depends_on_id":"bd-v29","type":"blocks","created_at":"2025-11-25T14:56:23.864569-08:00","created_by":"daemon"},{"issue_id":"bd-imj","depends_on_id":"bd-mdw","type":"blocks","created_at":"2025-11-25T14:56:48.592492-08:00","created_by":"daemon"},{"issue_id":"bd-imj","depends_on_id":"bd-03r","type":"blocks","created_at":"2025-11-25T14:56:54.295851-08:00","created_by":"daemon"}]}