Refactor init command and remove redundant @AGENTS.md (#648)

@AGENTS.md

@@ -1,40 +0,0 @@
-# Agent Instructions
-
-This project uses **bd** (beads) for issue tracking. Run `bd onboard` to get started.
-
-## Quick Reference
-
-```bash
-bd ready              # Find available work
-bd show <id>          # View issue details
-bd update <id> --status in_progress  # Claim work
-bd close <id>         # Complete work
-bd sync               # Sync with git
-```
-
-## Landing the Plane (Session Completion)
-
-**When ending a work session**, you MUST complete ALL steps below. Work is NOT complete until `git push` succeeds.
-
-**MANDATORY WORKFLOW:**
-
-1. **File issues for remaining work** - Create issues for anything that needs follow-up
-2. **Run quality gates** (if code changed) - Tests, linters, builds
-3. **Update issue status** - Close finished work, update in-progress items
-4. **PUSH TO REMOTE** - This is MANDATORY:
-   ```bash
-   git pull --rebase
-   bd sync
-   git push
-   git status  # MUST show "up to date with origin"
-   ```
-5. **Clean up** - Clear stashes, prune remote branches
-6. **Verify** - All changes committed AND pushed
-7. **Hand off** - Provide context for next session
-
-**CRITICAL RULES:**
-- Work is NOT complete until `git push` succeeds
-- NEVER stop before pushing - that leaves work stranded locally
-- NEVER say "ready to push when you are" - YOU must push
-- If push fails, resolve and retry until it succeeds
-

cmd/bd/init.go

@@ -1586,17 +1586,15 @@ const landingThePlaneSection = `
 - If push fails, resolve and retry until it succeeds
 `
 
-// addLandingThePlaneInstructions adds "landing the plane" instructions to AGENTS.md and @AGENTS.md
+// addLandingThePlaneInstructions adds "landing the plane" instructions to AGENTS.md
 func addLandingThePlaneInstructions(verbose bool) {
-	// Files to update (AGENTS.md and @AGENTS.md for web Claude)
+	// File to update (AGENTS.md is the standard comprehensive documentation file)
-	agentFiles := []string{"AGENTS.md", "@AGENTS.md"}
+	agentFile := "AGENTS.md"
 
-	for _, filename := range agentFiles {
+	if err := updateAgentFile(agentFile, verbose); err != nil {
-		if err := updateAgentFile(filename, verbose); err != nil {
+		// Non-fatal - continue with other files
-			// Non-fatal - continue with other files
+		if verbose {
-			if verbose {
+			fmt.Fprintf(os.Stderr, "Warning: failed to update %s: %v\n", agentFile, err)
-				fmt.Fprintf(os.Stderr, "Warning: failed to update %s: %v\n", filename, err)
-			}
 		}
 	}
 }