refactor: simplify wisp architecture - single DB with Wisp flag (bd-bkul)
- Remove cross-store squash logic from mol_squash.go - Delete runWispSquash() and squashWispToPermanent() functions - Simplify runMolSquash() to work with main store only - Update mol_burn.go to work with main database - Remove .beads-wisp/ directory references - Look for Wisp=true issues in main store instead - Update mol_bond.go to use Wisp flag instead of separate store - --wisp now creates issues with Wisp=true in main store - --pour creates issues with Wisp=false (persistent) - Update bondProtoMol signature to accept both flags - Deprecate wisp storage functions in beads.go - WispDirName, FindWispDir, FindWispDatabasePath - NewWispStorage, EnsureWispGitignore, IsWispDatabase - All marked deprecated with reference to bd-bkul - Remove obsolete cross-store squash tests - TestSquashWispToPermanent - TestSquashWispToPermanentWithSummary - TestSquashWispToPermanentKeepChildren All tests pass. Build succeeds. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
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@@ -81,54 +81,13 @@ func runMolSquash(cmd *cobra.Command, args []string) {
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keepChildren, _ := cmd.Flags().GetBool("keep-children")
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summary, _ := cmd.Flags().GetString("summary")
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// Try to resolve molecule ID in main store first
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// Resolve molecule ID in main store
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moleculeID, err := utils.ResolvePartialID(ctx, store, args[0])
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// If not found in main store, check wisp storage
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if err != nil {
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// Try wisp storage
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wispStore, wispErr := beads.NewWispStorage(ctx)
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if wispErr != nil {
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// No wisp storage available, report original error
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fmt.Fprintf(os.Stderr, "Error resolving molecule ID %s: %v\n", args[0], err)
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os.Exit(1)
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}
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defer func() { _ = wispStore.Close() }()
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wispMolID, wispResolveErr := utils.ResolvePartialID(ctx, wispStore, args[0])
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if wispResolveErr != nil {
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// Not found in either store
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fmt.Fprintf(os.Stderr, "Error resolving molecule ID %s: %v\n", args[0], err)
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os.Exit(1)
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}
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// Found in wisp storage - do cross-store squash
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runWispSquash(ctx, cmd, wispStore, store, wispMolID, dryRun, keepChildren, summary)
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return
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}
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// Found in main store - check if it's actually a wisp by looking at root
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issue, err := store.GetIssue(ctx, moleculeID)
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if err != nil {
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fmt.Fprintf(os.Stderr, "Error loading molecule: %v\n", err)
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fmt.Fprintf(os.Stderr, "Error resolving molecule ID %s: %v\n", args[0], err)
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os.Exit(1)
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}
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// If the root itself is a wisp, check if it should be in wisp storage
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// This handles the case where someone created a wisp in main store by mistake
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if issue.Wisp {
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// Check if there's a corresponding wisp in wisp storage
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wispStore, wispErr := beads.NewWispStorage(ctx)
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if wispErr == nil {
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defer func() { _ = wispStore.Close() }()
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if wispIssue, _ := wispStore.GetIssue(ctx, moleculeID); wispIssue != nil {
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// Found in wisp storage - do cross-store squash
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runWispSquash(ctx, cmd, wispStore, store, moleculeID, dryRun, keepChildren, summary)
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return
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}
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}
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}
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// Load the molecule subgraph from main store
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subgraph, err := loadTemplateSubgraph(ctx, store, moleculeID)
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if err != nil {
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@@ -207,80 +166,6 @@ func runMolSquash(cmd *cobra.Command, args []string) {
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}
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}
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// runWispSquash handles squashing a wisp from wisp storage into permanent storage.
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// This is the cross-store squash operation: load from wisp, create digest in permanent, delete wisp.
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func runWispSquash(ctx context.Context, _ *cobra.Command, wispStore, permanentStore storage.Storage, moleculeID string, dryRun, keepChildren bool, summary string) {
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// Load the molecule subgraph from wisp storage
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subgraph, err := loadTemplateSubgraph(ctx, wispStore, moleculeID)
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if err != nil {
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fmt.Fprintf(os.Stderr, "Error loading wisp molecule: %v\n", err)
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os.Exit(1)
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}
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// Collect all issues in the wisp (including root)
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allIssues := subgraph.Issues
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if dryRun {
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fmt.Printf("\nDry run: would squash wisp %s → permanent digest\n\n", moleculeID)
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fmt.Printf("Root: %s\n", subgraph.Root.Title)
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fmt.Printf("Storage: .beads-wisp/ → .beads/\n")
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fmt.Printf("\nIssues to squash (%d total):\n", len(allIssues))
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for _, issue := range allIssues {
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status := string(issue.Status)
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if issue.ID == subgraph.Root.ID {
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fmt.Printf(" - [%s] %s (%s) [ROOT]\n", status, issue.Title, issue.ID)
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} else {
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fmt.Printf(" - [%s] %s (%s)\n", status, issue.Title, issue.ID)
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}
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}
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fmt.Printf("\nDigest preview:\n")
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// For wisp squash, we generate a digest from all issues
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var children []*types.Issue
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for _, issue := range allIssues {
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if issue.ID != subgraph.Root.ID {
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children = append(children, issue)
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}
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}
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digest := generateDigest(subgraph.Root, children)
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if len(digest) > 500 {
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fmt.Printf("%s...\n", digest[:500])
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} else {
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fmt.Printf("%s\n", digest)
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}
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if keepChildren {
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fmt.Printf("\n--keep-children: wisp would NOT be deleted from .beads-wisp/\n")
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} else {
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fmt.Printf("\nWisp will be deleted from .beads-wisp/ after digest creation.\n")
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}
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return
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}
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// Perform the cross-store squash
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result, err := squashWispToPermanent(ctx, wispStore, permanentStore, subgraph, keepChildren, summary, actor)
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if err != nil {
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fmt.Fprintf(os.Stderr, "Error squashing wisp: %v\n", err)
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os.Exit(1)
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}
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// Schedule auto-flush for permanent store
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markDirtyAndScheduleFlush()
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if jsonOutput {
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outputJSON(result)
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return
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}
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fmt.Printf("%s Squashed wisp → permanent digest\n", ui.RenderPass("✓"))
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fmt.Printf(" Wisp: %s (.beads-wisp/)\n", moleculeID)
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fmt.Printf(" Digest: %s (.beads/)\n", result.DigestID)
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fmt.Printf(" Squashed: %d issues\n", result.SquashedCount)
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if result.DeletedCount > 0 {
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fmt.Printf(" Deleted: %d issues from wisp storage\n", result.DeletedCount)
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} else if result.KeptChildren {
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fmt.Printf(" Wisp preserved (--keep-children)\n")
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}
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}
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// generateDigest creates a summary from the molecule execution
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// Tier 2: Simple concatenation of titles and descriptions
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// Tier 3 (future): AI-powered summarization using Haiku
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@@ -432,85 +317,6 @@ func deleteWispChildren(ctx context.Context, s storage.Storage, ids []string) (i
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return deleted, lastErr
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}
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// squashWispToPermanent performs a cross-store squash: wisp → permanent digest.
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// This is the key operation for wisp lifecycle management:
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// 1. Creates a digest issue in permanent storage summarizing the wisp's work
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// 2. Deletes the entire wisp molecule from wisp storage
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//
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// The digest captures the outcome of the ephemeral work without preserving
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// the full execution trace (which would accumulate unbounded over time).
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func squashWispToPermanent(ctx context.Context, wispStore, permanentStore storage.Storage, subgraph *MoleculeSubgraph, keepChildren bool, summary string, actorName string) (*SquashResult, error) {
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if wispStore == nil || permanentStore == nil {
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return nil, fmt.Errorf("both wisp and permanent stores are required")
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}
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root := subgraph.Root
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// Collect all issue IDs (including root)
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var allIDs []string
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var children []*types.Issue
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for _, issue := range subgraph.Issues {
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allIDs = append(allIDs, issue.ID)
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if issue.ID != root.ID {
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children = append(children, issue)
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}
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}
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// Use agent-provided summary if available, otherwise generate basic digest
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var digestContent string
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if summary != "" {
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digestContent = summary
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} else {
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digestContent = generateDigest(root, children)
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}
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// Create digest issue in permanent storage (not a wisp)
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now := time.Now()
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digestIssue := &types.Issue{
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Title: fmt.Sprintf("Digest: %s @ %s", root.Title, now.Format("2006-01-02 15:04")),
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Description: digestContent,
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Status: types.StatusClosed,
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CloseReason: fmt.Sprintf("Squashed from wisp %s (%d issues)", root.ID, len(subgraph.Issues)),
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Priority: root.Priority,
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IssueType: types.TypeTask,
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Wisp: false, // Digest is permanent
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ClosedAt: &now,
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}
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result := &SquashResult{
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MoleculeID: root.ID,
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SquashedIDs: allIDs,
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SquashedCount: len(subgraph.Issues),
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KeptChildren: keepChildren,
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WispSquash: true,
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}
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// Create digest in permanent storage
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err := permanentStore.RunInTransaction(ctx, func(tx storage.Transaction) error {
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if err := tx.CreateIssue(ctx, digestIssue, actorName); err != nil {
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return fmt.Errorf("failed to create digest issue: %w", err)
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}
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result.DigestID = digestIssue.ID
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return nil
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})
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if err != nil {
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return nil, err
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}
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// Delete wisp issues from wisp storage (unless --keep-children)
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if !keepChildren {
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deleted, err := deleteWispChildren(ctx, wispStore, allIDs)
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if err != nil {
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// Log but don't fail - digest was created successfully
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fmt.Fprintf(os.Stderr, "Warning: failed to delete some wisp issues: %v\n", err)
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}
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result.DeletedCount = deleted
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}
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return result, nil
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}
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func init() {
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molSquashCmd.Flags().Bool("dry-run", false, "Preview what would be squashed")
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molSquashCmd.Flags().Bool("keep-children", false, "Don't delete wisp children after squash")
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