chore: Bump version to 0.47.0

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

.claude-plugin/marketplace.json

@@ -9,7 +9,7 @@
       "name": "beads",
       "source": "./claude-plugin",
       "description": "AI-supervised issue tracker for coding workflows",
-      "version": "0.46.0"
+      "version": "0.47.0"
     }
   ]
 }

CHANGELOG.md

@@ -7,6 +7,129 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+## [0.47.0] - 2026-01-11
+
+## [0.47.0] - 2026-01-11
+
+### Added
+
+- **Pull-first sync with 3-way merge** - Major sync improvement (#918)
+  - Reconciles local changes with remote updates before pushing
+  - Field-level conflict merging reduces manual intervention
+  - Base state tracking for better change detection
+
+- **`bd resolve-conflicts` command** - Resolve JSONL merge conflict markers (bd-7e7ddffa)
+  - Mechanical mode uses updated_at timestamps for deterministic resolution
+  - Closed status wins over open, higher priority wins
+  - Notes concatenated, dependencies unioned
+  - Dry-run mode and JSON output for agent integration
+
+- **`bd create --dry-run`** - Preview issue creation without side effects (bd-0hi7)
+  - Shows what would be created in human-readable or JSON format
+  - Works with --rig/--prefix flags
+
+- **Gate auto-discovery** - Auto-discover workflow run ID in `bd gate check` (bd-fbkd)
+  - Queries GitHub directly when await_id is a workflow name hint
+  - ZFC-compliant: takes most recent run deterministically
+
+- **Linear project filter** - `linear.project_id` config for sync (#938)
+  - Fetch only issues from a specific project instead of all team issues
+
+- **`bd ready --gated`** - Gate-resume discovery for molecules (bd-lhalq)
+  - Find molecules waiting on gates for automatic resumption
+
+- **Multi-repo custom types** - Trust and discover types across repositories (bd-62g22, bd-9ji4z)
+  - `bd doctor` discovers custom types from multiple repos
+  - Non-built-in types trusted during hydration
+
+- **Visual UX improvements** - Enhanced display for list tree, graph, and show commands
+  - Better formatting and readability
+
+- **Stale database handling** - AllowStale option in List API (bd-dpkdm)
+  - Read-only commands auto-import on stale DB (#977, #982)
+  - Cold-start bootstrap for read commands
+
+- **Batch molecule operations** - `bd mol burn` supports multiple molecules (feat(mol))
+
+- **Redirect health checks** - `bd doctor` validates redirect configurations
+
+- **Schema extensions** - New fields for HOP integration
+  - `crystallizes` column in sqlite storage
+  - `attests` edge type for skill attestations
+  - `owner` field for human attribution
+  - `actor` fallback includes git user.name (#994)
+
+### Fixed
+
+- **Daemon mode completeness** - Several daemon mode gaps closed (GH#952)
+  - `--due` and `--defer` flags now work in daemon mode (#953)
+  - `bd dep add/remove --json` returns proper JSON output (#961)
+  - `DeferUntil` field parsed correctly in daemon handleCreate (#950)
+  - Silence deprecation warnings in `--json` mode (#1039a691)
+
+- **Sync robustness**
+  - Canonicalize dbPath to fix filepath.Rel errors (GH#959, #960)
+  - Validate custom types in batch issue creation (#943)
+  - Force-add .beads in worktree for contributor mode (#947)
+  - Initialize store after daemon disconnect (GH#984)
+  - `sync --import-only` works when daemon was connected
+
+- **Windows fixes**
+  - Infinite loop in findLocalBeadsDir/findOriginalBeadsDir (GH#996)
+  - `bd init` no longer hangs when not in a git repo (#991)
+  - Daemon stop/kill uses proper Windows API (GH#992)
+  - SQLite uses DELETE mode on WSL2 Windows filesystem (GH#920)
+
+- **Daemon socket handling** - Long workspace paths now work (GH#1001, #1008)
+  - Socket path shortening for deep directory structures
+  - Relocate daemon socket for deep paths
+
+- **Prevent data corruption**
+  - FK constraint failures on batch/concurrent issue creation (GH#956)
+  - Prevent closing issues with open blockers (GH#962)
+  - Nil pointer panic in dep --json mode (GH#998)
+
+- **Doctor improvements**
+  - Recognize bd shims when external manager config exists (GH#946)
+  - Detect lefthook jobs syntax (GH#981)
+  - Add .sync.lock and sync_base.jsonl to gitignore (#980)
+
+- **Prime command** - Use flush-only workflow when no git remote configured (#940)
+
+- **Install safety** - Stop existing daemons before binary replacement (#945)
+
+- **Git hooks** - Add `--no-daemon` to sync commands to prevent inline import failures (#948)
+
+- **Linear sync** - Use project_id when creating issues via `sync --push` (GH#973, #1012)
+
+- **Team wizard** - Validate sync.branch in wizard and migrate commands (GH#923)
+
+- **Worktree fixes**
+  - Skip beads restore when directory is redirected (bd-lmqhe)
+  - Migrate sync works in git worktree environments (#970)
+
+- **Misc fixes**
+  - `bd edit` parses EDITOR with args (GH#987)
+  - Use SearchIssues for ID resolution (GH#942)
+  - Respect hierarchy.max-depth config setting (GH#995, #997)
+  - Add timeout to daemon request context to prevent hangs
+  - Avoid null values in Claude settings hooks (GH#955)
+  - Restore Gas Town types (agent, role, rig, convoy, slot) (GH#941)
+  - Add TypeRig constant and IsBuiltIn method (GH#1002)
+
+### Changed
+
+- **Daemon CLI refactor** - Consolidated to subcommands with semantic styling (#1006)
+
+- **Release formula refactor** - Bump script broken into individual version-update steps (bd-a854)
+  - More durable: can resume from specific step if interrupted
+  - Better visibility in activity feed
+
+### Documentation
+
+- Add lazybeads (Bubble Tea TUI by @codegangsta) to community tools (#951)
+- Fix `bd quickstart` link to database extension documentation (#939)
+
 ## [0.46.0] - 2026-01-06
 
 ### Added

claude-plugin/.claude-plugin/plugin.json

@@ -1,7 +1,7 @@
 {
   "name": "beads",
   "description": "AI-supervised issue tracker for coding workflows. Manage tasks, discover work, and maintain context with simple CLI commands.",
-  "version": "0.46.0",
+  "version": "0.47.0",
   "author": {
     "name": "Steve Yegge",
     "url": "https://github.com/steveyegge"

cmd/bd/info.go

@@ -296,6 +296,27 @@ type VersionChange struct {
 
 // versionChanges contains agent-actionable changes for recent versions
 var versionChanges = []VersionChange{
+	{
+		Version: "0.47.0",
+		Date:    "2026-01-11",
+		Changes: []string{
+			"NEW: Pull-first sync with 3-way merge - Reconciles local/remote before push (#918)",
+			"NEW: bd resolve-conflicts command - Mechanical JSONL conflict resolution (bd-7e7ddffa)",
+			"NEW: bd create --dry-run - Preview issue creation without side effects (bd-0hi7)",
+			"NEW: bd ready --gated - Find molecules waiting on gates (bd-lhalq)",
+			"NEW: Gate auto-discovery - Auto-discover workflow run ID in bd gate check (bd-fbkd)",
+			"NEW: Multi-repo custom types - bd doctor discovers types across repos (bd-62g22)",
+			"NEW: Stale DB handling - Read-only commands auto-import on stale DB (#977, #982)",
+			"NEW: Linear project filter - linear.project_id config for sync (#938)",
+			"FIX: Windows infinite loop in findLocalBeadsDir (GH#996)",
+			"FIX: bd init hangs on Windows when not in git repo (#991)",
+			"FIX: Daemon socket for deep paths - Long workspace paths now work (GH#1001)",
+			"FIX: Prevent closing issues with open blockers (GH#962)",
+			"FIX: bd edit parses EDITOR with args (GH#987)",
+			"FIX: Worktree/redirect handling - Skip restore when redirected (bd-lmqhe)",
+			"CHANGE: Daemon CLI refactored to subcommands (#1006)",
+		},
+	},
 	{
 		Version: "0.46.0",
 		Date:    "2026-01-06",

cmd/bd/templates/hooks/post-checkout

@@ -1,6 +1,6 @@
 #!/usr/bin/env sh
 # bd-shim v1
-# bd-hooks-version: 0.46.0
+# bd-hooks-version: 0.47.0
 #
 # bd (beads) post-checkout hook - thin shim
 #

cmd/bd/templates/hooks/post-merge

@@ -1,6 +1,6 @@
 #!/usr/bin/env sh
 # bd-shim v1
-# bd-hooks-version: 0.46.0
+# bd-hooks-version: 0.47.0
 #
 # bd (beads) post-merge hook - thin shim
 #

cmd/bd/templates/hooks/pre-commit

@@ -1,6 +1,6 @@
 #!/usr/bin/env sh
 # bd-shim v1
-# bd-hooks-version: 0.46.0
+# bd-hooks-version: 0.47.0
 #
 # bd (beads) pre-commit hook - thin shim
 #

cmd/bd/templates/hooks/pre-push

@@ -1,6 +1,6 @@
 #!/usr/bin/env sh
 # bd-shim v1
-# bd-hooks-version: 0.46.0
+# bd-hooks-version: 0.47.0
 #
 # bd (beads) pre-push hook - thin shim
 #

cmd/bd/version.go

@@ -14,7 +14,7 @@ import (
 
 var (
 	// Version is the current version of bd (overridden by ldflags at build time)
-    Version = "0.46.0"
+    Version = "0.47.0"
 	// Build can be set via ldflags at compile time
 	Build = "dev"
 	// Commit and branch the git revision the binary was built from (optional ldflag)

integrations/beads-mcp/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "beads-mcp"
-version = "0.46.0"
+version = "0.47.0"
 description = "MCP server for beads issue tracker."
 readme = "README.md"
 requires-python = ">=3.10"

integrations/beads-mcp/src/beads_mcp/__init__.py

@@ -4,4 +4,4 @@ This package provides an MCP (Model Context Protocol) server that exposes
 beads (bd) issue tracker functionality to MCP Clients.
 """
 
-__version__ = "0.46.0"
+__version__ = "0.47.0"

npm-package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@beads/bd",
-  "version": "0.46.0",
+  "version": "0.47.0",
   "description": "Beads issue tracker - lightweight memory system for coding agents with native binary support",
   "main": "bin/bd.js",
   "bin": {