When the database has orphaned dependencies or labels, the migration
invariant check fails and prevents the database from opening. This
creates a chicken-and-egg problem where bd doctor --fix cannot run.
The new bd repair command:
- Opens SQLite directly, bypassing invariant checks
- Deletes orphaned dependencies (issue_id or depends_on_id not in issues)
- Deletes orphaned labels (issue_id not in issues)
- Runs WAL checkpoint to persist changes
- Supports --dry-run to preview what would be cleaned
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
