Commit Graph

5 Commits

Author SHA1 Message Date
Codex Agent
bf9b2c83fb Annotate gosec-safe file accesses 2025-11-17 10:12:46 -07:00
Codex Agent
7b63b5a30b Fix CI regressions and stabilize tests 2025-11-17 10:06:35 -07:00
Ryan
690c73fc31 Performance Improvements (#319)
* feat: add performance testing framework foundation

Implements foundation for comprehensive performance testing and user
diagnostics for beads databases at 10K-20K scale.

Components added:
- Fixture generator (internal/testutil/fixtures/) for realistic test data
  * LargeSQLite/XLargeSQLite: 10K/20K issues with epic hierarchies
  * LargeFromJSONL/XLargeFromJSONL: test JSONL import path
  * Realistic cross-linked dependencies, labels, assignees
  * Reproducible with seeded RNG

- User diagnostics (bd doctor --perf) for field performance data
  * Collects platform info (OS, arch, Go/SQLite versions)
  * Measures key operation timings (ready, list, show, search)
  * Generates CPU profiles for bug reports
  * Clean separation in cmd/bd/doctor/perf.go

Test data characteristics:
- 10% epics, 30% features, 60% tasks
- 4-level hierarchies (Epic → Feature → Task → Subtask)
- 20% cross-epic blocking dependencies
- Realistic status/priority/label distributions

Supports bd-l954 (Performance Testing Framework epic)
Closes bd-6ed8, bd-q59i

* perf: optimize GetReadyWork with compound index (20x speedup)

Add compound index on dependencies(depends_on_id, type, issue_id) to
eliminate performance bottleneck in GetReadyWork recursive CTE query.

Performance improvements (10K issue database):
- GetReadyWork: 752ms → 36.6ms (20.5x faster)
- Target: <50ms ✓ ACHIEVED
- 20K database: ~1500ms → 79.4ms (19x faster)

Benchmark infrastructure enhancements:
- Add dataset caching in /tmp/beads-bench-cache/ to avoid regenerating
  10K-20K issues on every benchmark run (first run: ~2min, subsequent: <5s)
- Add progress logging during fixture generation (shows 10%, 20%... completion)
- Add database size logging (17.5 MB for 10K, 35.1 MB for 20K)
- Document rationale for only benchmarking large datasets (>10K issues)
- Add CPU/trace profiling with --profile flag for performance debugging

Schema changes:
- internal/storage/sqlite/schema.go: Add idx_dependencies_depends_on_type_issue

New files:
- internal/storage/sqlite/bench_helpers_test.go: Reusable benchmark setup with caching
- internal/storage/sqlite/sqlite_bench_test.go: Comprehensive benchmarks for critical operations
- Makefile: Convenient benchmark execution (make bench-quick, make bench)

Related:
- Resolves bd-5qim (optimize GetReadyWork performance)
- Builds on bd-6ed8 (fixture generator), bd-q59i (bd doctor --perf)

* perf: add WASM compilation cache to eliminate cold-start overhead

Configure wazero compilation cache for ncruces/go-sqlite3 to avoid
~220ms JIT compilation on every process start.

Cache configuration:
- Location: ~/.cache/beads/wasm/ (platform-specific via os.UserCacheDir)
- Automatic version management: wazero keys entries by its version
- Fallback: in-memory cache if directory creation fails
- No cleanup needed: old versions are harmless (~5-10MB each)

Performance impact:
- First run: ~220ms (populate cache)
- Subsequent runs: ~20ms (load from cache)
- Savings: ~200ms per cold start

Cache invalidation:
- Automatic when wazero version changes (upgrades use new cache dir)
- Manual cleanup: rm -rf ~/.cache/beads/wasm/ (safe to delete anytime)

This complements daemon mode:
- Daemon mode: eliminates startup cost by keeping process alive
- WASM cache: reduces startup cost for one-off commands or daemon restarts

Changes:
- internal/storage/sqlite/sqlite.go: Add init() with cache setup

* refactor: improve maintainability of performance testing code

Extract common patterns and eliminate duplication across benchmarks, fixture generation, and performance diagnostics. Replace magic numbers with explicit configuration to improve readability and make it easier to tune test parameters.

* docs: clarify profiling behavior and add missing documentation

Add explanatory comments for profiling setup to clarify why --profile
forces direct mode (captures actual database operations instead of RPC
overhead) and document the stopCPUProfile function's role in flushing
profile data to disk. Also fix gosec G104 linter warning by explicitly
ignoring Close() error during cleanup.

* fix: prevent bench-quick from running indefinitely

Added //go:build bench tags and skipped timeout-prone benchmarks to
prevent make bench-quick from running for hours.

Changes:
- Add //go:build bench tag to cycle_bench_test.go and compact_bench_test.go
- Skip Dense graph benchmarks (documented to timeout >120s)
- Fix compact benchmark prefix: bd- → bd (validation expects prefix without trailing dash)

Before: make bench-quick ran for 3.5+ hours (12,699s) before manual interrupt
After: make bench-quick completes in ~25 seconds

The Dense graph benchmarks are known to timeout and represent rare edge
cases that don't need optimization for typical workflows.
2025-11-15 12:46:13 -08:00
Steve Yegge
f4a2f87aff Fix #274: Add automatic .beads/.gitignore upgrade (#300)
* Fix #274: Add automatic .beads/.gitignore upgrade

Implements three mechanisms to ensure users get updated gitignore:

1. bd doctor --fix: Manually upgrade gitignore
2. Daemon auto-upgrade: Upgrades on startup if outdated
3. bd init idempotent: Safe to re-run, always updates gitignore

The gitignore template now lives in cmd/bd/doctor/gitignore.go
for consistent updates across all three mechanisms.

Fixes: #274

* Remove test binary

Amp-Thread-ID: https://ampcode.com/threads/T-7042cfcc-ac97-43d7-a40f-3fa1bb4e1c2b
Co-authored-by: Amp <amp@ampcode.com>

* Fix critical issues: remove merge artifact and apply gitignore template

- Remove .beads/beads.left.jsonl (merge artifact that shouldn't be committed)
- Apply new gitignore template to .beads/.gitignore (was missing patterns)

Amp-Thread-ID: https://ampcode.com/threads/T-7042cfcc-ac97-43d7-a40f-3fa1bb4e1c2b
Co-authored-by: Amp <amp@ampcode.com>

* bd sync: 2025-11-12 11:09:30

* Retrigger CI

Amp-Thread-ID: https://ampcode.com/threads/T-8d532264-6d5e-4b68-88e9-e4511851b64a
Co-authored-by: Amp <amp@ampcode.com>

* Fix duplicate DoctorCheck type definition

* Trigger CI after fixing type conflict

Amp-Thread-ID: https://ampcode.com/threads/T-8d532264-6d5e-4b68-88e9-e4511851b64a
Co-authored-by: Amp <amp@ampcode.com>

---------

Co-authored-by: Amp <amp@ampcode.com>
2025-11-12 12:46:27 -08:00
Ryan
f7e80dd80c feat: add context optimization features for AI agents (#297)
* feat: add bd prime and setup commands for AI agent integration

This commit consolidates context optimization features for AI agents:

## New Commands

**bd prime** - AI-optimized workflow context injection
- Outputs ~1-2k tokens of workflow context
- Context-aware: adapts to MCP vs CLI mode
- MCP mode: minimal reminders (~500 tokens)
- CLI mode: full command reference (~1-2k tokens)
- Warns against TodoWrite tool and markdown TODOs
- Designed for SessionStart/PreCompact hooks

**bd setup claude** - Claude Code integration installer
- Installs hooks via JSON configuration (not file scripts)
- Supports --project for project-only installation
- Supports --check to verify installation
- Supports --remove to uninstall hooks
- Idempotent (safe to run multiple times)
- Merges with existing settings

**bd setup cursor** - Cursor IDE integration installer
- Creates .cursor/rules/beads.mdc with workflow rules
- Simplified implementation (just overwrites file)

## bd doctor Enhancements

- New: CheckClaude() verifies Claude Code integration
- Detects plugin, MCP server, and hooks installation
- Provides actionable fix suggestions
- Extracted legacy pattern detection to doctor/legacy.go
- Detects JSONL-only mode and warns about legacy issues.jsonl

## Core Improvements

- FindBeadsDir() utility for cross-platform .beads/ discovery
- Works in JSONL-only mode (no database required)
- Sorted noDbCommands alphabetically (one per line for easy diffs)

## Testing

- Unit tests for setup command hook manipulation
- Tests for idempotency, adding/removing hooks
- All tests passing

## Documentation

- cmd/bd/doctor/claude.md - Documents why beads doesn't use Claude Skills
- commands/prime.md - Slash command for bd prime
- Fixed G304 gosec warnings with nosec comments

## Token Efficiency

The bd prime approach reduces AI context usage dramatically:
- MCP mode: ~500 tokens (vs ~10.5k for full MCP tool scan)
- CLI mode: ~1-2k tokens
- 80-99% reduction in standing context overhead

* fix: resolve linting errors in setup utils and remove obsolete test

- Add error check for tmpFile.Close() in setup/utils.go to fix golangci-lint G104
- Remove TestCheckMultipleJSONLFiles test that referenced deleted checkMultipleJSONLFiles function

Fixes golangci-lint errcheck violations introduced in the bd prime/setup feature.
2025-11-12 10:48:36 -08:00