Commands relate, unrelate, duplicate, and supersede now properly
use RPC Update when daemonClient is available, instead of always
calling store.UpdateIssue() directly and bypassing the daemon.
Added RelatesTo, DuplicateOf, and SupersededBy fields to UpdateArgs
in the RPC protocol, and updated server_issues_epics.go to handle them.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add migration to convert existing issue fields to dependency edges:
- replies_to -> replies-to dependency with thread_id
- relates_to -> relates-to dependencies (JSON array)
- duplicate_of -> duplicates dependency
- superseded_by -> supersedes dependency
The migration is idempotent (INSERT OR IGNORE) so it does not duplicate
edges that were already created by Phase 2 dual-write.
Generated with Claude Code
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
When issue fields (replies_to, relates_to, duplicate_of, superseded_by)
are set during CreateIssue or UpdateIssue, we now ALSO create the
corresponding dependency edges. This enables gradual migration to
edge-based storage while maintaining backward compatibility.
Changes:
- createGraphEdgesFromIssueFields: handles CreateIssue dual-write
- createGraphEdgesFromUpdates: handles UpdateIssue dual-write
- Replies-to edges include thread_id for efficient thread queries
- Uses INSERT OR IGNORE to handle idempotency
The dual-write ensures both field and dependency stay in sync during
the migration period.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add metadata and thread_id columns to dependencies table to support:
- Edge metadata: JSON blob for type-specific data (similarity scores, etc.)
- Thread queries: O(1) conversation threading via thread_id
Changes:
- New migration 020_edge_consolidation.go
- Updated Dependency struct with Metadata and ThreadID fields
- Added new entity types: authored-by, assigned-to, approved-by
- Relaxed DependencyType validation (any non-empty string ≤50 chars)
- Added IsWellKnown() and AffectsReadyWork() methods
- Updated SQL queries to include new columns
- Updated tests for new behavior
This enables HOP knowledge graph requirements and Reddit-style threading.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
The countDBIssuesFast() fallback path used SearchIssues without
IncludeTombstones, returning only live issues (161). Meanwhile
countIssuesInJSONL counts all lines including tombstones (221).
This mismatch caused false "stale DB detected" warnings on every
sync, even when DB and JSONL were in sync.
Fix: Set IncludeTombstones: true in the fallback SearchIssues call.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Removes the legacy YAML-based simple template system that provided
bug/epic/feature templates for --from-template flag on bd create.
Removed:
- cmd/bd/templates/bug.yaml, epic.yaml, feature.yaml
- Template struct and all YAML loading functions in template.go
- --from-template flag from bd create command
- template_security_test.go (tested removed functions)
- YAML template tests from template_test.go
The Beads template system remains (epics with "template" label,
instantiated via bd template instantiate with variable substitution).
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Add --assignee flag to `bd template instantiate` for work delegation
- Assigns the root epic to specified agent/user
- Child issues retain their template-defined assignees
- Enables Gas Town orchestration: instantiate + assign in one step
- Add missing --identity flag to `bd mail inbox` for consistency
- All mail subcommands now support --identity override
- Delete obsolete HANDOFF-template-redesign.md (work complete)
- Add test for assignee override behavior
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
No point warning about orphaned issues that are already closed or
tombstoned - they're dead either way.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Orphan detection was reporting tombstoned issues (already deleted) as
orphans, causing repeated warnings during sync. Filter out status='tombstone'
from the orphan query.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Remove the external MCP Agent Mail server integration that required
running a separate HTTP server and configuring environment variables.
The native `bd mail` system (stored as git-synced issues) remains
unchanged and is the recommended approach for inter-agent messaging.
Files removed:
- cmd/bd/message.go - Legacy `bd message` command
- integrations/beads-mcp/src/beads_mcp/mail.py, mail_tools.py
- lib/beads_mail_adapter.py - Python adapter library
- examples/go-agent/ - Agent Mail-focused example
- examples/python-agent/agent_with_mail.py, AGENT_MAIL_EXAMPLE.md
- docs/AGENT_MAIL*.md, docs/adr/002-agent-mail-integration.md
- tests/integration/test_agent_race.py, test_mail_failures.py, etc.
- tests/benchmarks/ - Agent Mail benchmarks
Updated documentation to remove Agent Mail references while keeping
native `bd mail` documentation intact.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Implements native Beads templates as an alternative to YAML templates:
- Templates are epics with the "template" label and {{variable}} placeholders
- `bd template list` shows both YAML and Beads templates
- `bd template show <id>` displays template structure and variables
- `bd template instantiate <id> --var key=value` clones subgraph with substitution
Key implementation:
- loadTemplateSubgraph: Recursively loads epic and all descendants
- cloneSubgraph: Creates new issues with ID remapping in a transaction
- extractVariables/substituteVariables: {{name}} pattern handling
Closes bd-r6a.2, bd-r6a.4
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Remove the entire YAML-based workflow system in preparation for
redesigning templates as native Beads.
Removed:
- cmd/bd/templates/workflows/*.yaml
- cmd/bd/workflow.go
- internal/types/workflow.go (WorkflowTemplate types)
The new design will use regular Beads with a template label,
and a clone-with-substitution operation for instantiation.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Wire up the existing --no-push flag to a config option so it can be
set as the default, and update bd prime output accordingly.
- Add no-push default to config.go, matching existing pattern
- Check config in sync.go when --no-push flag not explicitly set
- Update bd prime output to omit git push step when enabled
Allows bypassing preflight checks when needed (e.g., testing).
Use with caution - preflight checks exist for safety.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Adds `bd workflow` command group that creates epics with dependent child tasks
from YAML templates. This enables structured multi-step workflows like version
bumps where agents can work through tasks with verification and dependencies.
Commands:
- `bd workflow list` - List available workflow templates
- `bd workflow show <name>` - Show template details and task graph
- `bd workflow create <name> --var key=value` - Instantiate workflow
- `bd workflow status <epic-id>` - Show workflow progress
- `bd workflow verify <task-id>` - Run verification command
Features:
- Variable substitution with {{var}} syntax
- Built-in variables: {{today}}, {{user}}
- Preflight checks before workflow creation
- Hierarchical task IDs under epic (bd-xxx.1, bd-xxx.2)
- Dependency graph between tasks
- Verification commands embedded in task descriptions
Includes built-in `version-bump` template with 21 tasks covering:
- All 10+ version files
- check-versions.sh verification
- Git commit, tag, push
- CI monitoring (goreleaser, npm, pypi, homebrew)
- Local machine upgrades
- Final verification
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Files missed in manual version bump:
- .claude-plugin/plugin.json
- .claude-plugin/marketplace.json
- integrations/beads-mcp/pyproject.toml
- integrations/beads-mcp/__init__.py
- Hook templates
Generated with Claude Code
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
npm deprecated classic tokens and now requires either granular tokens
with 2FA or OIDC trusted publishing. This updates the workflow to use
the latter, which is npm recommended approach for CI/CD.
Requires configuring trusted publisher on npmjs.com:
- Organization: steveyegge
- Repository: beads
- Workflow: release.yml
Generated with Claude Code
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Remove ClearDirtyIssues() which had a race condition that could lose
dirty issues if export failed partway through. All callers now use
ClearDirtyIssuesByID() which only clears specific exported issues.
- Remove from Storage interface
- Remove from SQLite and Memory implementations
- Update 6 test call sites to use ClearDirtyIssuesByID()
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
