When git merge replaces the .beads/beads.db file, the daemon's
SQLite connection becomes stale (still reading deleted inode).
This adds FreshnessChecker that detects file replacement via
inode/mtime comparison and triggers automatic reconnection.
Implementation:
- freshness.go: monitors db file for replacement
- store.go: adds EnableFreshnessChecking() and reconnect()
- queries.go: calls checkFreshness() on GetIssue/SearchIssues
- daemon.go: enables freshness checking at startup
- freshness_test.go: comprehensive tests including merge scenario
Code quality (per review):
- Extract configureConnectionPool() helper to reduce duplication
- Handle Close() error in reconnect() (log but continue)
- Use t.Cleanup() pattern in tests per project conventions
- Rename setupFreshnessTest() per naming conventions
Overhead: ~2.6μs per read op (~0.8% of total query time)
Signed-off-by: Alessandro De Blasis <alex@deblasis.net>
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Setting vendorHash to placeholder to trigger CI failure with correct hash.
Go dependencies were updated.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* bd-ckej: fix orphan skip count mismatch on fresh import
When OrphanSkip mode is used during import and a child issue's parent doesn't
exist, the issue ID was cleared to '' but then regenerated anyway in
GenerateBatchIssueIDs, causing it to be created in the database. This resulted
in a count mismatch: JSONL had 824 issues but only 823 were in the database (one
orphan was counted but not created).
Fix: Filter out orphaned issues with empty IDs before batch creation and track
them in result.Skipped so the count stays accurate.
* test: add TestImportOrphanSkip_CountMismatch for bd-ckej
Adds comprehensive test that verifies orphaned issues are properly skipped
during import when orphan_handling=OrphanSkip and parent doesn't exist.
Also improves the fix to pre-filter orphaned issues before batch creation,
ensuring they're not inserted then have IDs cleared (preventing count
mismatches).
---------
Co-authored-by: Amp <amp@example.com>
Closes#566
There might be some further work to ensure that bd version still reports branch and commit hash. That'll be a separate PR.
Co-authored-by: Matt Wilkie <matt.wilkie@yukon.ca>
When bd doctor detects legacy deletions.jsonl, --fix now runs the
tombstone migration automatically instead of requiring users to
manually run bd migrate-tombstones.
This makes the migration smoother for multi-clone scenarios where
only one clone needs to do the actual migration, but other clones
may still have local deletions.jsonl files that need cleanup.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Tombstones are now stored inline in issues.jsonl.
Added deletions.jsonl to .gitignore to prevent re-tracking.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add auto-commit, auto-push, local mode, sync interval, and daemon mode
to the status output when querying a running daemon.
This helps users understand the current daemon configuration without
having to check logs or remember what flags were used at startup.
Changes:
- Add config fields to StatusResponse in protocol.go
- Add SetConfig() method to Server for daemon to set its config
- Update handleStatus() to include config in response
- Update showDaemonStatus() to query and display config via RPC
- Add comprehensive test coverage for new functionality
Co-authored-by: Christian Catalan <crcatala@gmail.com>
- Add comprehensive CHANGELOG entry for v0.30.0 (tombstone architecture)
- Add v0.30.0 to versionChanges in info.go for `bd info --whats-new`
- Acknowledge 13 community contributors
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
GH#464: Add safety guards to prevent deletion of open/in_progress issues during sync:
- Safety guard in git-history-backfill (importer.go)
- Safety guard in deletions manifest processing
- Warning when uncommitted changes detected before pull (daemon_sync.go)
- Enhanced repo ID mismatch error message
GH#545: Fix bd blocked to show status=blocked issues (sqlite/ready.go):
- Changed from INNER JOIN to LEFT JOIN to include issues without dependencies
- Added WHERE clause to include both status=blocked AND dependency-blocked issues
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Mark unused ctx parameter with underscore in getRepoRootForWorktree
- Replace exec.Command("test", "-d") with os.Stat for directory check
- Handle file.Close() errors properly in compact.go and migrate_tombstones.go
- Explicitly ignore cleanup errors with _ assignment
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Update default.nix vendorHash to match current go.mod dependencies
- Fix NewSQLiteStorage calls to include required context.Context parameter
- Rename duplicate runCmd to runGitCmd in routing_integration_test.go
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Adds a new 'bd reset' command that completely removes beads from a repository:
- Stops running daemon
- Removes git hooks (pre-commit, post-merge, pre-push, post-checkout)
- Removes merge driver configuration
- Removes .gitattributes entry
- Removes sync branch worktrees
- Removes .beads directory
By default runs in dry-run mode showing what would be deleted.
Use --force to actually perform the reset.
Closessteveyegge/beads#505
Extract two helper functions from checkSyncBranchHookQuick and
checkSyncBranchHookCompatibility to reduce code duplication:
1. getPrePushHookPath(path) - resolves pre-push hook path handling
both standard .git/hooks and shared hooks via core.hooksPath
2. extractBdHookVersion(content) - parses version from hook content
looking for bd-hooks-version: marker
Also documented the intentional behavior difference:
- Quick check: returns OK for custom hooks (silent)
- Full check: returns Warning for custom hooks (user awareness)
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
The previous bd-in7q fix had backwards logic - by EXCLUDING tombstones
from currentIDs, they appeared missing when compared to historicalIDs,
causing HydrateDeletionsManifest to erroneously add them to deletions.jsonl.
This corruption manifested when:
1. Issues were migrated to tombstones via migrate-tombstones
2. Doctor hydration ran (directly or via sync)
3. Tombstones were seen as deleted and re-added to deletions.jsonl
4. Next import skipped thousands of issues with in deletions manifest
Fix: Include ALL issues (including tombstones) in currentIDs. Tombstones
represent migrated deletions that ARE accounted for - they should not
trigger new deletion records.
Generated with Claude Code
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add --stop-all flag to bd daemon command that:
- Discovers all running bd daemon processes using the registry
- Gracefully stops them all (with force kill fallback)
- Reports how many were stopped
Useful for:
- Cleaning up multiple daemons causing race conditions
- Getting a clean slate before running bd sync
- Debugging daemon-related issues
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
The orphan detection was incorrectly flagging issues with dots in their
prefix (e.g., "my.project-abc123") as orphans because it was looking for
any dot in the ID, treating everything before the first dot as the
parent ID.
The fix:
- Add IsHierarchicalID() helper that correctly detects hierarchical IDs
by checking if the ID ends with .{digits} (e.g., "bd-abc.1")
- Update SQL query in orphan detection migration to use GLOB patterns
that only match IDs ending with numeric suffixes
- Update all Go code that checks for hierarchical IDs to use the new
helper function
Test cases added:
- Unit tests for IsHierarchicalID covering normal, dotted prefix, and
edge cases
- Integration test verifying dotted prefixes do not trigger false
positives
Fixes: #508
Allows changing issue type (task/epic/bug/feature/chore) via bd update --type.
Storage layer already supported it, this adds CLI and RPC support.
Fixes GH#522.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Fixes GH#523: older versions of bd could close issues without setting
the closed_at timestamp. When importing such issues, validation would
fail with "closed issues must have closed_at timestamp".
This fix adds defensive handling in all issue creation/validation paths:
- If status is "closed" and closed_at is nil, set closed_at to
max(created_at, updated_at) + 1 second
- Similarly for tombstones missing deleted_at
Applied to:
- batch_ops.go: validateBatchIssuesWithCustomStatuses (main import path)
- transaction.go: CreateIssue and CreateIssues
- queries.go: CreateIssue
- multirepo.go: upsertIssueInTx
Also adds comprehensive tests for the defensive fix.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add support for claude.local.md and .claude/claude.local.md as local-only
alternatives to CLAUDE.md. These files are intended to be gitignored for
personal customizations that should not be committed to the repo.
Changes:
- Update CheckAgentDocumentation to detect claude.local.md files
- Update CheckLegacyBeadsSlashCommands to check claude.local.md files
- Update CheckDocumentationBdPrimeReference to check claude.local.md files
- Add fix message mentioning claude.local.md as an option
- Add test cases for claude.local.md support
Closes#488🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
When sync.branch is configured to the same branch as the current branch,
git worktree creation fails because the same branch cannot be checked out
in multiple locations.
This fix detects when sync.branch equals the current branch and falls back
to direct commits on the current branch instead of using the worktree-based
approach.
Changes:
- Add IsSyncBranchSameAsCurrent() helper in syncbranch package
- Add GetCurrentBranch() helper function
- Update sync.go to detect this case and skip worktree operations
- Add unit tests for the new functionality
Closes#519🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
When worktrees are nested under the main repo (e.g.,
/project/.worktrees/feature/), bd now correctly finds .beads/ in the
parent repo.
The fix simplifies GetMainRepoRoot() to use `git rev-parse --git-common-dir`
which always returns the main repo's .git directory, regardless of whether
we're in a regular repo, a worktree, or a nested worktree.
- Simplified GetMainRepoRoot() implementation
- Added tests for nested worktree scenarios
- Updated CHANGELOG.md
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Closes GH#516: bd init now automatically:
- Creates AGENTS.md and @AGENTS.md with landing-the-plane instructions if they don't exist
- Appends the instructions to existing files if they don't have them
- Skips if the section already exists (idempotent)
- Skips in stealth mode (user wants invisible setup)
The landing-the-plane instructions ensure AI agents properly complete
their work sessions by pushing all changes to remote before ending.
Fixes GH#483 - The pre-commit hook was blocking commits when
`bd sync --flush-only` failed, even if the user had removed beads
from their branch. This made it impossible to commit on branches
that don't have beads configured.
Changes:
- Change "Error:" to "Warning:" in the message
- Remove `exit 1` so commits proceed even if flush fails
- Add comments explaining why we don't block commits
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
