Commit Graph

761 Commits

Author SHA1 Message Date
Steve Yegge
32c803dd16 fix(worktree): Cache git detection results to eliminate slowness (bd-7di)
In git worktrees, any bd command was slow with a 2-3s pause because:
- git.IsWorktree() was called 4+ times per command
- Each call spawned 2 git processes (git-dir and git-common-dir)
- git.GetRepoRoot() and git.GetMainRepoRoot() also called multiple times

Fix: Cache results using sync.Once since these values do not change during
a single command execution:
- IsWorktree() - caches worktree detection
- GetRepoRoot() - caches repo root path
- GetMainRepoRoot() - caches main repo root for worktrees

Added ResetCaches() for test cleanup between subtests that change directories.

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-25 22:04:40 -08:00
Steve Yegge
df5d4b384c Add TOML support for formulas (gt-xmyha)
- Add TOML parsing using BurntSushi/toml
- Update formula loader to try .toml first, fall back to .json
- Add `bd formula convert` command for JSON→TOML migration
- Multi-line string support for readable descriptions
- Cache git worktree/reporoot checks for performance

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-25 21:59:19 -08:00
Aarya Reddy
bd5fc214c3 feat(ready,blocked): Add --parent flag for scoping by epic/bead desce… (#743)
* feat(ready,blocked): Add --parent flag for scoping by epic/bead descendants

Add --parent flag to `bd ready` and `bd blocked` CLI commands and MCP tools
to filter results to all descendants of a specific epic or bead.

## Backward Compatibility

- CLI: New optional --parent flag; existing usage unchanged
- RPC: New `blocked` operation added (was missing); existing operations unchanged
- MCP: New optional `parent` parameter; existing calls work as before
- Storage interface: GetBlockedIssues signature changed to accept WorkFilter
  - All callers updated to pass empty filter for existing behavior
  - Empty WorkFilter{} returns identical results to previous implementation

## Implementation Details

SQLite uses recursive CTE to traverse parent-child hierarchy:

    WITH RECURSIVE descendants AS (
        SELECT issue_id FROM dependencies
        WHERE type = 'parent-child' AND depends_on_id = ?
        UNION ALL
        SELECT d.issue_id FROM dependencies d
        JOIN descendants dt ON d.depends_on_id = dt.issue_id
        WHERE d.type = 'parent-child'
    )
    SELECT issue_id FROM descendants

MemoryStorage implements equivalent recursive traversal with visited-set
cycle protection via collectDescendants helper.

Parent filter composes with existing filters (priority, labels, assignee, etc.)
as an additional WHERE clause - all filters are AND'd together.

## RPC Blocked Support

MCP beads_blocked() existed but daemon client raised NotImplementedError.
Added OpBlocked and handleBlocked to enable daemon RPC path, which was
previously broken. Now both CLI and daemon clients work for blocked queries.

## Changes

- internal/types/types.go: Add ParentID *string to WorkFilter
- internal/storage/sqlite/ready.go: Add recursive CTE for parent filtering
- internal/storage/memory/memory.go: Add getAllDescendants/collectDescendants
- internal/storage/storage.go: Update GetBlockedIssues interface signature
- cmd/bd/ready.go: Add --parent flag to ready and blocked commands
- internal/rpc/protocol.go: Add OpBlocked constant and BlockedArgs type
- internal/rpc/server_issues_epics.go: Add handleBlocked RPC handler
- internal/rpc/client.go: Add Blocked client method
- integrations/beads-mcp/: Add BlockedParams model and parent parameter

## Usage

  bd ready --parent bd-abc              # All ready descendants
  bd ready --parent bd-abc --priority 1 # Combined with other filters
  bd blocked --parent bd-abc            # All blocked descendants

## Testing

Added 4 test cases for parent filtering:
- TestParentIDFilterDescendants: Verifies recursive traversal (grandchildren)
- TestParentIDWithOtherFilters: Verifies composition with priority filter
- TestParentIDWithBlockedDescendants: Verifies blocked issues excluded from ready
- TestParentIDEmptyParent: Verifies empty result for childless parent

* fix: Correct blockedCmd indentation and suppress gosec false positive

- Fix syntax error from incorrect indentation in blockedCmd Run function
- Add nolint:gosec comment for GetBlockedIssues SQL formatting (G201)
  The filterSQL variable contains only parameterized WHERE clauses with
  ? placeholders, not user input
2025-12-25 21:11:58 -08:00
Steve Yegge
e91f0de8d1 feat(formula): Add inline step expansion (gt-8tmz.35)
Steps can now declare their own expansion using the Expand field:

  steps:
    - id: design
      expand: rule-of-five
      expand_vars:
        iterations: 3

This is more convenient than compose.expand for single-step expansions.
The step is replaced by the expansion template with variables substituted.

Reuses existing expandStep() and mergeVars() from gt-8tmz.34.

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-25 20:46:12 -08:00
Steve Yegge
f82c75c39e feat(formula): Validate expanded step IDs are unique (gt-8tmz.36) 2025-12-25 20:19:55 -08:00
Steve Yegge
e8458935f9 feat(formula): Implement expansion var overrides (gt-8tmz.34)
- Add vars parameter to expandStep for {varname} substitution
- Add mergeVars to combine formula defaults with rule overrides
- Update ApplyExpansions to merge and pass vars for expand/map rules
- Apply var substitution to step ID, title, description, assignee,
  labels, and dependencies
- Add comprehensive tests for var overrides functionality

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-25 20:07:29 -08:00
Steve Yegge
f3a5e02a35 feat(close): Add --suggest-next flag to show newly unblocked issues (GH#679)
When closing an issue, the new --suggest-next flag returns a list of
issues that became unblocked (ready to work on) as a result of the close.

This helps agents and users quickly identify what work is now available
after completing a blocker.

Example:
  $ bd close bd-5 --suggest-next
  ✓ Closed bd-5: Completed

  Newly unblocked:
    • bd-7 "Implement feature X" (P1)
    • bd-8 "Write tests for X" (P2)

Implementation:
- Added GetNewlyUnblockedByClose to storage interface
- Implemented efficient single-query for SQLite using blocked_issues_cache
- Added SuggestNext field to CloseArgs in RPC protocol
- Added CloseResult type for structured response
- CLI handles both daemon and direct modes

Thanks to @kraitsura for the detailed feature request and design.

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-25 20:05:04 -08:00
Steve Yegge
cfecadc8a5 docs: Clarify formulas are JSON, add distillation and sharing docs
- Fix YAML → JSON references in formula.go and types.go
- Update MOLECULES.md with ephemeral proto architecture
- Add Distillation section: extract formulas from completed work
- Add Sharing section: Mol Mall formula marketplace
- Update Layer Cake diagram to show ephemeral proto flow

Related: bd-1dez (Mol Mall epic)

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-25 18:43:08 -08:00
Steve Yegge
ea9f1d2760 Add edge case tests for expression evaluator (code review)
Test cases for:
- Unary minus in expression: 3*-2 -> -6
- Parenthesized negative: (-5) -> -5
- Unary minus after power: 2^-1 -> 0 (truncated)

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-25 17:55:42 -08:00
Steve Yegge
030838cfde Implement computed range expansion for loops (gt-8tmz.27)
Add support for for-each expansion over computed ranges:

  loop:
    range: "1..2^{disks}-1"  # Evaluated at cook time
    var: move_num
    body: [...]

Features:
- Range field in LoopSpec for computed iterations
- Var field to expose iteration value to body steps
- Expression evaluator supporting + - * / ^ and parentheses
- Variable substitution in range expressions using {name} syntax
- Title/description variable substitution in expanded steps

Example use case: Towers of Hanoi formula where step count is 2^n-1

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-25 17:48:35 -08:00
Steve Yegge
ba17898365 Implement fanout gate: waits-for children aggregation (gt-8tmz.38)
- Add children-of(step-id) syntax for explicit spawner reference
- Add WaitsForSpec type and ParseWaitsFor() helper
- Update cook.go to create DepWaitsFor dependencies with metadata
- Infer spawner from first needs entry when using all-children
- Add validation tests for children-of() syntax
- Add unit tests for ParseWaitsFor()

This completes the Christmas Ornament aggregation pattern:
- survey-workers does for-each → creates N children
- aggregate waits-for children-of(survey-workers)

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-25 17:33:54 -08:00
Steve Yegge
73e56d0876 Fix in-place mutation in ApplyBranches/ApplyGates (gt-v1pcg)
- ApplyBranches and ApplyGates now clone steps before modifying,
  matching the immutability pattern of ApplyLoops and ApplyAdvice
- Added internal applyBranchesWithMap/applyGatesWithMap for efficiency
- ApplyControlFlow builds stepMap once for both (gt-gpgdv optimization)
- Added cloneStepsRecursive helper
- Added TestApplyBranches_Immutability and TestApplyGates_Immutability

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-25 16:48:37 -08:00
Steve Yegge
d2f71773cb fix: Chain iterations after nested loop expansion (gt-zn35j)
Fixes a bug where outer iteration chaining was lost when nested loops
were expanded. The problem was:

1. chainLoopIterations set: outer.iter2.inner depends on outer.iter1.inner
2. ApplyLoops recursively expanded nested loops
3. outer.iter2.inner became outer.iter2.inner.iter1.work, etc.
4. The dependency was lost (referenced non-existent ID)

The fix:
- Move recursive ApplyLoops BEFORE chaining
- Add chainExpandedIterations that finds iteration boundaries by ID prefix
- Works with variable step counts per iteration (nested loops expand differently)

Now outer.iter2's first step correctly depends on outer.iter1's LAST step,
ensuring sequential execution of outer iterations.

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-25 16:35:28 -08:00
Steve Yegge
bce4f8f2d4 feat: Add source tracing metadata to cooked steps (gt-8tmz.18)
Add SourceFormula and SourceLocation fields to track where each step
came from during the cooking process. This enables debugging of complex
compositions with inheritance, expansion, and advice.

Changes:
- Added SourceFormula and SourceLocation fields to Step struct (formula/types.go)
- Added same fields to Issue struct (types/types.go)
- Added SetSourceInfo() to parser.go - sets source on all steps after parsing
- Updated cook.go to copy source fields from Step to Issue
- Updated dry-run output to display source info: [from: formula@location]
- Updated advice.go to set source on advice-generated steps
- Updated controlflow.go to preserve source on loop-expanded steps
- Updated expand.go to preserve source on template-expanded steps

The source location format is:
- steps[N] - regular step at index N
- steps[N].children[M] - child step
- steps[N].loop.body[M] - loop body step
- template[N] - expansion template step
- advice - step inserted by advice transformation

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-25 16:27:48 -08:00
Steve Yegge
b43358b600 feat: Add nested loop support in control flow (gt-zn35j)
Enables loops within loop bodies to be properly expanded:

- Copy Loop field in expandLoopIteration (was intentionally omitted)
- Add cloneLoopSpec for deep copying of LoopSpec with body steps
- Recursively call ApplyLoops at end of expandLoop to expand nested loops
- Also copy OnComplete field for consistency

Nested IDs follow natural chaining pattern:
  outer.iter1.inner.iter2.step

Tested with 2-level and 3-level nesting scenarios.

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-25 16:22:58 -08:00
Steve Yegge
a42fac8cb9 feat: Add on_complete/for-each runtime expansion types (gt-8tmz.8)
Implements the schema and validation for runtime dynamic expansion:

- Add OnCompleteSpec type for step completion triggers
- Add on_complete field to Step struct
- Validate for_each path format (must start with "output.")
- Validate bond is required with for_each (and vice versa)
- Validate parallel and sequential are mutually exclusive
- Add cloneOnComplete for proper step cloning
- Add comprehensive tests for parsing and validation

The runtime executor (in gastown) will interpret these fields to:
- Bond N molecules when step completes based on output.collection
- Run bonded molecules in parallel or sequential order
- Pass item/index context via vars substitution

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-25 16:07:57 -08:00
Steve Yegge
8b5168f1a3 fix: Control flow review fixes (gt-8tmz.4)
Critical bug fixes identified during code review:

1. External dependency rewriting: Dependencies on steps OUTSIDE the loop
   are now preserved as-is instead of being incorrectly prefixed.

2. Children dependency rewriting: Child step dependencies are now properly
   rewritten with iteration context.

3. Missing fields: Added Expand, ExpandVars, Gate fields to loop expansion.

4. Condition validation: Loop `until` conditions are now validated with
   ParseCondition to catch syntax errors early.

5. Label format: Changed gate and loop labels from colon-delimited to
   JSON format for unambiguous parsing:
   - gate:{"condition":"expr"}
   - loop:{"until":"expr","max":N}

Added TestApplyLoops_ExternalDependencies to verify the fix.

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-25 15:02:07 -08:00
Steve Yegge
4f065024b5 feat: Implement control flow operators (gt-8tmz.4)
Add loop, branch, and gate operators for formula step transformation:

- LoopSpec: Fixed-count loops expand body N times with chained iterations.
  Conditional loops expand once with runtime metadata labels.
- BranchRule: Fork-join patterns wire dependencies for parallel paths.
- GateRule: Adds condition labels for runtime evaluation before steps.

Types added to types.go:
- LoopSpec (count/until/max/body)
- BranchRule (from/steps/join)
- GateRule (before/condition)
- Loop field on Step
- Branch/Gate arrays on ComposeRules

New controlflow.go with ApplyLoops, ApplyBranches, ApplyGates, and
ApplyControlFlow convenience function. Wired into cook.go before
advice and expansion operators.

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-25 14:52:21 -08:00
Steve Yegge
2ff17686d0 feat(prime): add no-git-ops config to disable git ops in session close (GH#593)
Users who want manual control over git commits can now set:

  bd config set no-git-ops true

This makes `bd prime` output the stealth-mode session close protocol
(just `bd sync --flush-only`) instead of the full git add/commit/push
workflow. Useful when:

- You want to verify work before committing
- Claude tries to auto-commit after context compaction
- You have a custom git workflow

The --stealth flag still works as before for one-off use.

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-25 14:25:45 -08:00
Steve Yegge
c9aa755ddc fix: Address code review issues in condition evaluator
- Empty set 'all' returns false (avoids premature gate passing)
- Add proper error handling for Atoi in count comparisons
- Extract inline regex to package-level var (performance)
- Handle == and != in compareString function
- Add nil/bool value handling in compare function
- Add tests for edge cases: empty children, nil output, bool values

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-25 14:00:56 -08:00
Steve Yegge
f56f3615e8 feat: Add condition evaluator for gates and loops (gt-8tmz.7)
Implements mechanical condition evaluation for formula control flow:
- Step status checks: step.status == 'complete'
- Step output access: step.output.approved == true
- Aggregates: children(step).all(status == 'complete'), steps.complete >= 3
- External checks: file.exists('go.mod'), env.CI == 'true'

Conditions are intentionally limited to keep evaluation decidable.
No arbitrary code execution allowed.

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-25 13:54:21 -08:00
Steve Yegge
fd57f61f34 fix: Prevent aspect self-matching infinite recursion (gt-8tmz.16)
ApplyAdvice now collects original step IDs before applying rules and
only matches steps in that set. This prevents advice patterns (like "*")
from matching their own inserted before/after steps.

Added test case demonstrating that a "*" pattern only adds advice to
original steps, not to inserted steps.

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-25 12:21:23 -08:00
Steve Yegge
516c62e543 feat: Add aspect composition support (gt-8tmz.5)
- Add Aspects field to ComposeRules for listing aspect formulas
- Apply aspects during cooking after expansions
- Aspects are loaded by name and their advice rules are applied

Usage in formula:
  "compose": {
    "aspects": ["security-audit", "logging"]
  }

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-25 12:15:12 -08:00
Steve Yegge
de1a9559fa fix: Map expansion now matches nested child steps (gt-8tmz.33)
The map rule was only iterating over top-level steps, missing nested
children. Now uses buildStepMap to include all steps at any depth.

Added test case for map expansion over nested children.

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-25 12:08:05 -08:00
Steve Yegge
acb4aeee55 Fix misleading comment in replaceStep 2025-12-25 11:51:03 -08:00
Steve Yegge
b82d0e7c0f Fix expansion operators: update dependencies after expansion
When a step is expanded (e.g., implement -> implement.draft, implement.refine-1,
etc.), any steps that depended on the original step should now depend on the
last step of the expansion.

Call UpdateDependenciesForExpansion after both expand and map operations.

Fixes gt-8tmz.3

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-25 11:44:28 -08:00
Steve Yegge
127a36dd5f Formula cycle detection: show full extends chain in error message (gt-8tmz.15)
When bd cook encounters a circular extends chain (A extends B extends A),
the error message now shows the full chain: "cycle-a -> cycle-b -> cycle-a"
instead of just "circular extends detected: cycle-a".

This makes debugging circular dependencies much easier by showing exactly
which formulas are involved in the cycle.

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-25 02:33:22 -08:00
Steve Yegge
84c124fc3d Implement max expansion depth limit (default 5) (gt-8tmz.17)
Add DefaultMaxExpansionDepth constant and depth tracking in expandStep
to prevent runaway nested expansions. The limit applies to template
children during expansion.

Changes:
- Add DefaultMaxExpansionDepth = 5 constant
- Update expandStep to track depth and return error when exceeded
- Update ApplyExpansions callers to handle errors
- Add TestExpandStepDepthLimit test for depth limiting

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-25 02:23:20 -08:00
Steve Yegge
cfb1196044 Implement expansion operators for formula composition (gt-8tmz.3)
Add expand and map operators that apply macro-style template expansion:
- expand(target, template) - replace a single step with expanded template
- map(select, template) - replace all matching steps with expanded template

The expansion formula type (e.g., rule-of-five) uses a template field with
{target} and {target.description} placeholders that are substituted when
applied to target steps.

Changes:
- Add Template field to Formula struct for expansion formulas
- Add ExpandRule and MapRule types to ComposeRules
- Implement ApplyExpansions in new expand.go
- Add LoadByName method to Parser for loading expansion formulas
- Integrate expansion into bd cook command
- Add comprehensive tests

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-25 02:11:03 -08:00
Steve Yegge
9c1bf7d4ea fix: Combine db prefix with type prefix for mol/wisp IDs (bd-hobo)
Changed prefix logic to combine the database prefix with the type prefix:
- bd-wisp-xxx (was: wisp-xxx)
- bd-mol-xxx (was: mol-xxx)

This ensures IDs like hq-wisp-xxx at town level and gt-mol-xxx for gastown,
maintaining database namespace while adding type recognition.

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-25 02:10:08 -08:00
Steve Yegge
f78fe883d0 feat: Distinct prefixes for protos, molecules, wisps (bd-hobo)
Added type-specific ID prefixes for better visual recognition:
- `bd pour` now generates IDs with "mol-" prefix
- `bd wisp create` now generates IDs with "wisp-" prefix
- Regular issues continue using the configured prefix

Implementation:
- Added IDPrefix field to types.Issue (internal, not exported to JSONL)
- Added Prefix field to CloneOptions for spawning operations
- Added IDPrefix to RPC CreateArgs for daemon communication
- Updated storage layer to use issue.IDPrefix when generating IDs
- Updated pour.go and wisp.go to pass appropriate prefixes

This enables instant visual recognition of entity types and prevents
accidental modification of templates.

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-25 02:05:25 -08:00
Steve Yegge
a643b9ab67 Implement advice operators for formula composition (gt-8tmz.2)
Add Lisp-style advice operators to the formula DSL:
- before(target, step) - insert step before target
- after(target, step) - insert step after target
- around(target, wrapper) - wrap target with before/after

Features:
- Glob pattern matching for targets (*.implement, shiny.*, etc)
- Pointcut matching by type or label
- Step reference substitution ({step.id}, {step.title})
- Automatic dependency chaining

New types: AdviceRule, AdviceStep, AroundAdvice, Pointcut
New functions: ApplyAdvice, MatchGlob, MatchPointcut

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-25 01:53:43 -08:00
Steve Yegge
e6ce0d6365 refactor: Switch formula format from YAML to JSON
- Change file extension from .formula.yaml to .formula.json
- Replace gopkg.in/yaml.v3 with encoding/json in parser
- Remove yaml struct tags, keep json tags only
- Update all test cases to use JSON format
- Update documentation references

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-25 01:37:22 -08:00
Steve Yegge
2a6191e49b fix: use content-level merge for divergence recovery (bd-kpy)
Replace fetchAndRebaseInWorktree with contentMergeRecovery in pushFromWorktree.

The problem: When push fails due to non-fast-forward, the old code used git
rebase to recover. But git rebase is text-level and does not invoke the JSONL
merge driver. This could resurrect tombstones - if remote had a tombstone and
local had closed, the rebase would overwrite the tombstone.

The fix: Use the same content-level merge algorithm that PullFromSyncBranch
uses. This respects tombstone semantics - recent tombstones always win over
live issues.

Changes:
- Add contentMergeRecovery() that does content-level merge instead of rebase
- Update pushFromWorktree to call contentMergeRecovery
- Mark fetchAndRebaseInWorktree as deprecated (kept for reference)
- Add tests for tombstone preservation during merge recovery

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-24 22:41:40 -08:00
Steve Yegge
5a46879741 refactor: remove deprecated .beads-wisp directory support (bd-bkul)
Wisps now use Wisp=true flag in the main database. The separate
.beads-wisp/ directory is no longer needed.

Removed:
- WispDirName constant
- FindWispDir()
- FindWispDatabasePath()
- NewWispStorage()
- EnsureWispGitignore()
- IsWispDatabase()
- All related tests
- .beads-wisp/ from .gitignore
2025-12-24 21:30:20 -08:00
Steve Yegge
f2e6df95c0 refactor: simplify wisp architecture - single DB with Wisp flag (bd-bkul)
- Remove cross-store squash logic from mol_squash.go
  - Delete runWispSquash() and squashWispToPermanent() functions
  - Simplify runMolSquash() to work with main store only

- Update mol_burn.go to work with main database
  - Remove .beads-wisp/ directory references
  - Look for Wisp=true issues in main store instead

- Update mol_bond.go to use Wisp flag instead of separate store
  - --wisp now creates issues with Wisp=true in main store
  - --pour creates issues with Wisp=false (persistent)
  - Update bondProtoMol signature to accept both flags

- Deprecate wisp storage functions in beads.go
  - WispDirName, FindWispDir, FindWispDatabasePath
  - NewWispStorage, EnsureWispGitignore, IsWispDatabase
  - All marked deprecated with reference to bd-bkul

- Remove obsolete cross-store squash tests
  - TestSquashWispToPermanent
  - TestSquashWispToPermanentWithSummary
  - TestSquashWispToPermanentKeepChildren

All tests pass. Build succeeds.

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-24 20:42:54 -08:00
Steve Yegge
c0271aedbf wip: simplify wisp architecture - single db with Wisp flag (bd-bkul)
Progress on eliminating separate .beads-wisp/ directory:

- Add --wisp flag to bd create (creates issue with Wisp=true)
- Update bd wisp create to use main db instead of separate wisp storage
- Update bd wisp list to query main db with Wisp filter
- Update bd wisp gc to work with main database
- Add Wisp field to RPC ListArgs for daemon mode support
- Fix terminology: use "old/abandoned" for time-based cleanup,
  reserve "stale" for graph-pressure staleness (per Gas Town taxonomy)

Still TODO:
- Finish mol squash simplification (remove cross-store logic)
- Remove runWispSquash and squashWispToPermanent functions
- Update mol burn similarly
- Deprecate .beads-wisp/ functions in internal/beads/beads.go
- Test all changes

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-24 20:31:27 -08:00
Steve Yegge
42c23e24df fix(lint): add nosec directive for formula parser file read
Also: comprehensive CHANGELOG update for v0.36.0 prep
- Formula system (bd cook, extends, needs/waits_for)
- Gate issue type for async coordination
- bd list --pretty/--watch viewer enhancements
- bd search date/priority/content filters
- 15+ bug fixes since v0.35.0
- Test coverage improvements (daemon 72%, compact 82%)

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-24 15:22:01 -08:00
Steve Yegge
c28defb710 fix(sqlite): handle dots in prefix for extractParentChain (GH#664)
extractParentChain was using strings.Split(id, ".") which incorrectly
parsed prefixes containing dots (like "alicealexandra.com"). This caused
--parent to fail with "parent does not exist" even when the parent was
present in the database.

The fix uses IsHierarchicalID to walk up the hierarchy correctly, only
splitting on dots followed by numeric suffixes (the actual hierarchy
delimiter).

Example:
- "test.example-abc.1" now correctly returns ["test.example-abc"]
- Previously it incorrectly returned ["test", "test.example-abc"]

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-24 14:39:30 -08:00
Steve Yegge
25402184a6 fix: respect allowed_prefixes config during import (gt-2z6s)
The buildAllowedPrefixSet function now parses the allowed_prefixes config
and includes those prefixes when validating imports. This allows mol-*
prefixes to be imported without errors when configured.

Config example: bd config set allowed_prefixes "gt-,mol-"
2025-12-24 14:28:23 -08:00
Steve Yegge
f28785d2dc feat(formula): support needs and waits_for fields, add --prefix flag
- bd-hr39: Add `needs` field to Step as alias for depends_on. Converts
  to blocking dependencies between sibling steps during cooking.

- bd-j4cr: Add `waits_for` field to Step. Values: all-children or
  any-children. Preserved as gate:<value> label during cooking.

- bd-47qx: Add --prefix flag to bd cook command to prepend a prefix
  to proto IDs, enabling use of project prefixes like gt-.

Includes validation, dry-run output, and comprehensive tests.

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-24 13:59:38 -08:00
Steve Yegge
d1c4526e6e fix(formula): address code review findings
Fixes from self-review of formula parser and bd cook:

1. Atomicity: Add cleanup on failure in cookFormula - if labels/deps
   transaction fails, delete the already-created issues

2. Validation: Add recursive depends_on validation for child steps
   and validate priority ranges for children

3. Documentation: Mark unimplemented fields (Expand, ExpandVars,
   Condition, Gate) with TODO(future) comments

4. Thread safety: Add note that Parser is NOT thread-safe

5. Error messages: Track first definition location for duplicate ID
   errors (e.g., "duplicate id at steps[1], first defined at steps[0]")

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-24 13:50:19 -08:00
Steve Yegge
4fdcda4568 feat(formula): add formula parser and bd cook command (bd-weu8, bd-wa2l)
Implements a new formula system for defining workflow templates in YAML:

- internal/formula/types.go: YAML schema types for .formula.yaml files
  - Formula, Step, VarDef, ComposeRules, BondPoint, Gate types
  - Support for workflow, expansion, and aspect formula types
  - Variable definitions with required, default, enum, and pattern

- internal/formula/parser.go: Parser with extends/inheritance support
  - Parse formula files from multiple search paths
  - Resolve extends references for formula inheritance
  - Variable extraction and substitution
  - Variable validation (required, enum, pattern)

- cmd/bd/cook.go: bd cook command to compile formulas into protos
  - Parse and resolve formula YAML
  - Create proto bead with template label
  - Create child issues for each step
  - Set up parent-child and blocking dependencies
  - Support --dry-run, --force, --search-path flags

Example workflow:
  bd cook mol-feature.formula.yaml
  bd pour mol-feature --var component=Auth --var framework=react

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-24 13:42:01 -08:00
Steve Yegge
1e7c7f5e54 fix(sqlite): update child_counters when explicit child IDs are created (GH#728)
When creating issues with explicit hierarchical IDs (e.g., bd-test.1, bd-test.2
via --id flag or import), the child_counters table was not being updated.
This caused GetNextChildID to return colliding IDs when later called with
--parent.

Changes:
- Add ensureChildCounterUpdatedWithConn() to update counter on explicit child creation
- Add ParseHierarchicalID() to extract parent and child number from IDs
- Update CreateIssue to call counter update after hierarchical ID validation
- Update EnsureIDs to call counter update when parent exists
- Add post-insert phase in batch operations to update counters after FK
  constraint can be satisfied
- Update tests to reflect new behavior where counter is properly initialized

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-24 13:22:55 -08:00
Steve Yegge
ce2b05356a feat(deps): detect/prevent child→parent dependency anti-pattern (bd-nim5)
This prevents a common mistake where users add dependencies from child
issues to their parent epics. This creates a deadlock:
- Child can't start (blocked by open parent)
- Parent can't close (children not done)

Changes:
- dep.go: Reject child→parent deps at creation time with clear error
- server_labels_deps_comments.go: Same check for daemon RPC
- doctor/validation.go: New check detects existing bad deps
- doctor/fix/validation.go: Auto-fix removes bad deps
- doctor.go: Wire up check and fix handler

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-24 13:03:27 -08:00
Steve Yegge
9743b45c6d fix(import): preserve comment created_at timestamps during import (#735)
Comment timestamps were being overwritten with CURRENT_TIMESTAMP during
import, causing infinite sync loops between hosts as each import would
update timestamps.

Added ImportIssueComment() method that accepts and preserves the original
timestamp from JSONL, and updated importComments() to use it.

Closes #735
2025-12-24 12:45:20 -08:00
Charles P. Cross
cdbca65ed4 feat(config): add override notification for config parameters (#731)
feat(config): add override notification for config parameters

Adds verbose logging when config values are overridden by flags/env vars.
2025-12-24 12:35:54 -08:00
Charles P. Cross
48b96c9411 fix(config): normalize yaml config keys to canonical format (#732)
fix(config): normalize yaml config keys to canonical format

Fixes sync.branch vs sync-branch config key mismatch.
2025-12-24 12:35:50 -08:00
Charles P. Cross
8676c41c18 fix: address CI lint errors (gosec, errcheck, unparam, duplicate tests) (#730)
* fix: address CI lint errors (gosec, errcheck, unparam, duplicate tests)

- Remove duplicate TestHandleDelete_DryRun and TestHandleDelete_PartialSuccess
  from server_mutations_test.go (already defined in server_delete_test.go)
- Add nolint:gosec comments for exec.CommandContext calls in sync_branch.go
  (variables come from trusted config/git sources)
- Fix gosec G304/G306 in yaml_config.go (file read/write permissions)
- Fix errcheck in mol_run.go (templateStore.Close)
- Add nolint:unparam for updateYamlKey error return

* fix: add remaining nolint:gosec comments for exec.CommandContext calls

- sync_branch.go: diffCmd, logCmd (dry-run), commitCmd, pushCmd, remoteCmd
- sync_check.go: checkLocalCmd

* fix: add more nolint:gosec comments for exec.CommandContext calls

- sync_branch.go: pullCmd
- sync_check.go: localRefCmd, remoteRefCmd, aheadCmd
- sync_import.go: checkoutCmd

* fix: add final nolint:gosec comments for exec.CommandContext calls

- sync_check.go: behindCmd
- sync_import.go: fetchCmd

---------

Co-authored-by: Charles P. Cross <cpdata@users.noreply.github.com>
2025-12-24 12:35:32 -08:00
Steve Yegge
5cabb0f3d7 test(storage): add interface conformance tests for storage package (bd-a15d)
Add storage_test.go with:
- Compile-time interface conformance checks for Storage and Transaction
- Mock implementations for interface testing
- Config struct tests for sqlite and postgres configurations
- Interface documentation tests that verify all method groups exist

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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-24 00:10:42 -08:00