When choosing which duplicate to keep, the merge target now considers
both dependentCount (children/blocked-by) AND dependsOnCount (dependencies).
This ensures issues with ANY structural connections are preferred over
empty shells, rather than only considering children.
- Updated chooseMergeTarget to calculate weight = dependentCount + dependsOnCount
- Updated display output to show weight instead of just dependents
- Updated JSON output to include dependencies and weight fields
- Added tests for dependsOnCount inclusion and combined weight calculation
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
The duplicate merge target selection now considers structural relationships:
1. Dependent count (children, blocked-by) - highest priority
2. Text reference count - secondary
3. Lexicographically smallest ID - tiebreaker
This fixes the bug where `bd duplicates --auto-merge` would suggest closing
an epic with 17 children instead of the empty shell duplicate.
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Adds closed_by_session tracking for entity CV building per Gas Town
decision 009-session-events-architecture.md.
Changes:
- Add ClosedBySession field to Issue struct
- Add closed_by_session column to issues table (migration 034)
- Add --session flag to bd close command
- Support CLAUDE_SESSION_ID env var as fallback
- Add --session flag to bd update for status=closed
- Display closed_by_session in bd show output
- Update Storage interface to include session parameter in CloseIssue
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Executed-By: beads/crew/dave
Rig: beads
Role: crew
Replace all fatih/color usages with internal/ui package that provides:
- Semantic color tokens (Pass, Warn, Fail, Accent, Muted)
- Adaptive light/dark mode support via Lipgloss AdaptiveColor
- Ayu theme colors for consistent, accessible output
- Tufte-inspired data-ink ratio principles
Files migrated: 35 command files in cmd/bd/
Add docs/ui-philosophy.md documenting:
- Semantic token usage guidelines
- Light/dark terminal optimization rationale
- Tufte and perceptual UI/UX theory application
- When to use (and not use) color in CLI output
Add a --readonly flag that blocks all write operations, allowing workers
to read beads state without modifying it. Workers can use:
- bd show, bd list, bd ready (read operations)
Workers cannot use:
- bd create, bd update, bd close, bd sync, etc. (write operations)
The flag can be set via:
- --readonly flag on command line
- BD_READONLY=true environment variable
- readonly: true in config file
This enables swarm workers to see their assigned work from a static
snapshot of the beads database without accidentally modifying it.
Commands protected by readonly mode:
- create, update, close, delete, edit
- sync, import, reopen
- comment add, dep add/remove, label add/remove
- repair-deps, compact, migrate, migrate-hash-ids, migrate-issues
- rename-prefix, validate --fix-all, duplicates --auto-merge
- epic close-eligible, jira sync
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
When --auto-merge is used, performMerge now automatically:
1. Closes source issues with "Duplicate of <target>" reason
2. Links each source to target with a "related" dependency
Closes bd-hdt
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Updated TODO comments with proper beads issue IDs:
- bd-hdt: Implement auto-merge functionality
- bd-gqo: Implement daemon health checks
- bd-r46: Support --reason flag in daemon mode for reopen
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Complete implementation of signal-aware context propagation for graceful
cancellation across all commands and storage operations.
Key changes:
1. Signal-aware contexts (bd-rtp):
- Added rootCtx/rootCancel in main.go using signal.NotifyContext()
- Set up in PersistentPreRun, cancelled in PersistentPostRun
- Daemon uses same pattern in runDaemonLoop()
- Handles SIGINT/SIGTERM for graceful shutdown
2. Context propagation (bd-yb8):
- All commands now use rootCtx instead of context.Background()
- sqlite.New() receives context for cancellable operations
- Database operations respect context cancellation
- Storage layer propagates context through all queries
3. Cancellation tests (bd-2o2):
- Added import_cancellation_test.go with comprehensive tests
- Added export cancellation test in export_test.go
- Tests verify database integrity after cancellation
- All cancellation tests passing
Fixes applied during review:
- Fixed rootCtx lifecycle (removed premature defer from PersistentPreRun)
- Fixed test context contamination (reset rootCtx in test cleanup)
- Fixed export tests missing context setup
Impact:
- Pressing Ctrl+C during import/export now cancels gracefully
- No database corruption or hanging transactions
- Clean shutdown of all operations
Tested:
- go build ./cmd/bd ✓
- go test ./cmd/bd -run TestImportCancellation ✓
- go test ./cmd/bd -run TestExportCommand ✓
- Manual Ctrl+C testing verified
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
- bd-1h8: Add --no-daemon hint to compact error messages
- bd-8ql: Replace non-existent merge command with actionable guidance
- bd-ayw: Add 'When to use daemon mode' decision tree to daemon.md
- bd-keb: Add database maintenance section to QUICKSTART.md
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Fixed TestHashIDs_IdenticalContentDedup test failure by removing duplicate
--json flag definitions that were shadowing the global persistent flag.
Root cause: Commands had both a persistent --json flag (main.go) and local
--json flags (in individual command files). The local flags shadowed the
persistent flag, preventing jsonOutput variable from being set correctly.
Changes:
- Removed 31 duplicate --json flag definitions from 15 command files
- All commands now use the single persistent --json flag from main.go
- Commands now correctly output JSON when --json flag is specified
Test results:
- TestHashIDs_IdenticalContentDedup: Now passes (was failing)
- TestHashIDs_MultiCloneConverge: Passes without JSON parsing warnings
- All other tests: Pass with no regressions
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
- Renamed config.json to metadata.json to clarify purpose (database metadata)
- Fixed config.yaml/config.json conflict by making Viper explicitly load only config.yaml
- Added automatic migration from config.json to metadata.json on first read
- Fixed jsonOutput variable shadowing across 22 command files
- Updated bd init to create both metadata.json and config.yaml template
- Fixed 5 failing JSON output tests
- All tests passing
Resolves config file confusion and makes config.yaml work correctly.
Closes#178 (global flags), addresses config issues from #193
Amp-Thread-ID: https://ampcode.com/threads/T-e6ac8192-e18f-4ed7-83bc-4a5986718bb7
Co-authored-by: Amp <amp@ampcode.com>
- New 'bd duplicates' command finds content duplicates across database
- Groups by content hash (title, description, design, acceptance criteria)
- Chooses merge target by reference count or smallest ID
- Supports --auto-merge and --dry-run flags
- Added --dedupe-after flag to 'bd import' for post-import detection
- Comprehensive test coverage for duplicate detection
- Updated AGENTS.md and ADVANCED.md with usage examples
Amp-Thread-ID: https://ampcode.com/threads/T-6f99566f-c979-43ed-bd8f-5aa38b0f6191
Co-authored-by: Amp <amp@ampcode.com>
