Analysis found these commands are dead code:
- gt never calls `bd pin` - uses `bd update --status=pinned` instead
- Beads.Pin() wrapper exists but is never called
- bd hook functionality duplicated by gt mol status
- Code comment says "pinned field is cosmetic for bd hook visibility"
Removed:
- cmd/bd/pin.go
- cmd/bd/unpin.go
- cmd/bd/hook.go
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add a created_by field to track who created each issue, similar to how
comments have an author field.
- Add CreatedBy string field to Issue struct
- Add migration 029 to add created_by column to issues table
- Update all SELECT/INSERT/Scan statements across storage layer
- Populate created_by in bd create from actor chain
- Display created_by in bd show output
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add async gates - coordination primitives for agents to wait on external events
like CI completion, PR merges, timers, or human approval.
Changes:
- Add 'gate' issue type to types.go with gate-specific fields:
- AwaitType: condition type (gh:run, gh:pr, timer, human, mail)
- AwaitID: condition identifier
- Timeout: max wait duration
- Waiters: mail addresses to notify when gate clears
- Add SQLite migration 027_gate_columns for new fields
- Update all SQLite storage queries to handle gate fields
- Add bd gate commands: create, show, list, close, wait
- All commands support --json output and --no-daemon mode
Closes: bd-2v0f, bd-lz49, bd-u66e
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add support for template molecules (is_template field and TypeMolecule type):
- Add IsTemplate field to Issue type with JSON support
- Add TypeMolecule constant to IssueType constants
- Add IsTemplate filter to IssueFilter for querying
- Update all SQL queries to include is_template column
- Add migration 024 for is_template column
- Add FindMoleculesJSONLInDir helper for molecules.jsonl path detection
This enables treating certain issues as read-only templates that can be
instantiated to create work items. The template flag allows separating
template molecules from regular work items in queries and exports.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add pinned column to the issues table to support persistent context markers
that should not be treated as work items (bd-7h5).
Changes:
- Add pinned column to schema.go CREATE TABLE
- Add migration 023_pinned_column.go for existing databases
- Update all issue queries to include pinned column
- Update scanIssues and scanIssuesWithDependencyType to handle pinned field
- Add Pinned field to types.Issue struct with JSON serialization
- Fix migrations_test.go to include pinned in legacy schema test
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
This is the final phase of the Edge Schema Consolidation. It removes
the deprecated edge fields (RepliesTo, RelatesTo, DuplicateOf, SupersededBy)
from the Issue struct and all related code.
Changes:
- Remove edge fields from types.Issue struct
- Remove edge field scanning from queries.go and transaction.go
- Update graph_links_test.go to use dependency API exclusively
- Update relate.go to use AddDependency/RemoveDependency
- Update show.go with helper functions for thread traversal via deps
- Update mail_test.go to verify thread links via dependencies
- Add migration 022 to drop columns from issues table
- Fix cycle detection to allow bidirectional relates-to links
- Fix migration 022 to disable foreign keys before table recreation
All edge relationships now use the dependencies table exclusively.
The old Issue fields are fully removed.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Add TypeMessage issue type for inter-agent communication
- Add 6 new Issue fields: Sender, Ephemeral, RepliesTo, RelatesTo,
DuplicateOf, SupersededBy
- Add 4 new dependency types: replies-to, relates-to, duplicates, supersedes
- Create migration 019_messaging_fields with indexes
- Update all CRUD operations across storage layer
- Fix reset_test.go to use correct function names
- Fix redundant newline lint error in sync.go
Closes: bd-kwro.1
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Add migration 017_close_reason_column.go to create the column
- Update all INSERT statements to include close_reason
- Update all SELECT statements to include close_reason
- Update doctor.go to check for close_reason in schema validation
- Remove workaround code that batch-loaded close reasons from events table
- Fix migrations_test.go to include close_reason in test table schema
This fixes sync loops where close_reason values were silently dropped
because the DB lacked the column despite the struct having the field.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
- Add repo_mtimes table to track JSONL file modification times
- Implement HydrateFromMultiRepo() with mtime-based skip optimization
- Support tilde expansion for repo paths in config
- Add source_repo column via migration (not in base schema)
- Fix schema to allow migration on existing databases
- Comprehensive test coverage for hydration logic
- Resurrect missing parent issues bd-cb64c226 and bd-cbed9619
Implementation:
- internal/storage/sqlite/multirepo.go - Core hydration logic
- internal/storage/sqlite/multirepo_test.go - Test coverage
- docs/MULTI_REPO_HYDRATION.md - Documentation
Schema changes:
- source_repo column added via migration only (not base schema)
- repo_mtimes table for mtime caching
- All SELECT queries updated to include source_repo
Database recovery:
- Restored from 17 to 285 issues
- Created placeholder parents for orphaned hierarchical children
Amp-Thread-ID: https://ampcode.com/threads/T-faa1339a-14b2-426c-8e18-aa8be6f5cde6
Co-authored-by: Amp <amp@ampcode.com>
- Updated label CLI commands to support both daemon and direct modes
- Added label fetching to GetIssue() and scanIssues() methods
- All label operations (add, remove, list, list-all) work with daemon
- Closed bd-162 (label CLI commands), bd-166 (duplicate), bd-141 (daemon support)
Amp-Thread-ID: https://ampcode.com/threads/T-4858f62e-ad06-4cc7-ad05-17ee76861f86
Co-authored-by: Amp <amp@ampcode.com>
Breaks down large functions into smaller, focused helpers to pass gocyclo linter:
Auto-import refactoring:
- Extract parseJSONLIssues() to handle JSONL parsing
- Extract handleCollisions() to detect and report conflicts
- Extract importIssueData() to coordinate issue/dep/label imports
- Extract updateExistingIssue() and createNewIssue() for clarity
- Extract importDependencies() and importLabels() for modularity
Flush refactoring:
- Extract recordFlushFailure() and recordFlushSuccess() for state management
- Extract readExistingJSONL() to isolate file reading logic
- Extract fetchDirtyIssuesFromDB() to separate DB access
- Extract writeIssuesToJSONL() to handle atomic writes
Command improvements:
- Extract executeLabelCommand() to eliminate duplication in label.go
- Extract addLabelsToIssue() helper for label management
- Replace deprecated strings.Title with manual capitalization
Configuration:
- Add gocyclo exception for test files in .golangci.yml
All tests passing, no functionality changes.
Add nullable external_ref TEXT field to link bd issues with external
systems like GitHub Issues, Jira, etc. Includes automatic schema
migration for backward compatibility.
Changes:
- Added external_ref column to issues table with feature-based migration
- Updated Issue struct with ExternalRef *string field
- Added --external-ref flag to bd create and bd update commands
- Updated all SQL queries across the codebase to include external_ref:
- GetIssue, CreateIssue, UpdateIssue, SearchIssues
- GetDependencies, GetDependents, GetDependencyTree
- GetReadyWork, GetBlockedIssues, GetIssuesByLabel
- Added external_ref handling in import/export logic
- Follows existing patterns for nullable fields (sql.NullString)
This enables tracking relationships between bd issues and external
systems without requiring changes to existing databases or JSONL files.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Optimize auto-flush by tracking which issues have changed instead of
exporting the entire database on every flush. For large projects with
1000+ issues, this provides significant performance improvements.
Changes:
- Add dirty_issues table to schema with issue_id and marked_at columns
- Implement dirty tracking functions in new dirty.go file:
* MarkIssueDirty() - Mark single issue as needing export
* MarkIssuesDirty() - Batch mark multiple issues efficiently
* GetDirtyIssues() - Query which issues need export
* ClearDirtyIssues() - Clear tracking after successful export
* GetDirtyIssueCount() - Monitor dirty issue count
- Update all CRUD operations to mark affected issues as dirty:
* CreateIssue, UpdateIssue, DeleteIssue
* AddDependency, RemoveDependency (marks both issues)
* AddLabel, RemoveLabel, AddEvent
- Modify export to support incremental mode:
* Add --incremental flag to export only dirty issues
* Used by auto-flush for performance
* Full export still available without flag
- Add Storage interface methods for dirty tracking
Performance impact: With incremental export, large databases only write
changed issues instead of regenerating entire JSONL file on every
auto-flush.
Closes bd-39
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
This is a fundamental architectural shift from binary SQLite to JSONL as
the source of truth for git workflows.
## New Features
- `bd export --format=jsonl` - Export issues to JSON Lines format
- `bd import` - Import issues from JSONL (create new, update existing)
- `--skip-existing` flag for import to only create new issues
## Architecture Change
**Before:** Binary SQLite database committed to git
**After:** JSONL text files as source of truth, SQLite as ephemeral cache
Benefits:
- Git-friendly text format with clean diffs
- AI-resolvable merge conflicts (append-only is 95% conflict-free)
- Human-readable issue tracking in git
- No binary merge conflicts
## Documentation
- Updated README with JSONL-first workflow and git hooks
- Added TEXT_FORMATS.md analyzing JSONL vs CSV vs binary
- Updated GIT_WORKFLOW.md with historical context
- .gitignore now excludes *.db, includes .beads/*.jsonl
## Implementation Details
- Export sorts issues by ID for consistent diffs
- Import handles both creates and updates atomically
- Proper handling of pointer fields (EstimatedMinutes)
- All tests passing
## Breaking Changes
- Database files (*.db) should now be gitignored
- Use export/import workflow for git collaboration
- Git hooks recommended for automation
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Core features:
- Dependency-aware issue tracking with SQLite backend
- Ready work detection (issues with no open blockers)
- Dependency tree visualization
- Cycle detection and prevention
- Full audit trail
- CLI with colored output
Security and correctness fixes applied:
- Fixed SQL injection vulnerability in UpdateIssue (whitelisted fields)
- Fixed race condition in ID generation (added mutex)
- Fixed cycle detection to return full paths (not just issue IDs)
- Added cycle prevention in AddDependency (validates before commit)
- Added comprehensive input validation (priority, status, types, etc.)
- Fixed N+1 query in GetBlockedIssues (using GROUP_CONCAT)
- Improved query building in GetReadyWork (proper string joining)
- Fixed P0 priority filter bug (using Changed() instead of value check)
All critical and major issues from code review have been addressed.
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