- Add 3-way merge deletion tracking using snapshot files
- Create .beads/beads.base.jsonl and .beads/beads.left.jsonl snapshots
- Integrate into both sync.go and daemon_sync.go
- Add comprehensive test suite in deletion_tracking_test.go
- Update .gitignore to exclude snapshot files
This fixes the resurrection bug where deleted issues come back after
multi-workspace git sync. Uses the beads-merge 3-way merge logic to
detect and apply deletions correctly.
- Add #nosec directives with explanations for all gosec warnings in worktree operations
- Tighten directory permissions from 0755 to 0750 for better security
- Fix misspellings: archaeological -> archeological, cancelled -> canceled
- Remove unused jsonlPath parameter from syncBranchCommitAndPush
- Change branchExists to return bool instead of (bool, error) - error was never used
All changes maintain backward compatibility and improve code quality.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
