- Check existing JSONL issues before falling back to directory name on initialization
- Implement readFirstIssueFromJSONL() to extract prefix from first issue
- Added tests for readFirstIssueFromJSONL
- Convert exec.Command() tests to in-process rootCmd.Execute()
- Achieve ~10x speedup (3.8s vs 40s for 17 tests)
- Add mutex serialization for thread safety
- Implement manual temp dir cleanup with retries
- Reset global state between tests to prevent contamination
- Keep TestCLI_EndToEnd for binary validation
- Fixed TestCLI_Create to handle warning messages before JSON output
- Added tests for formatDependencyType (show.go)
- Added tests for truncateForBox and gitRevParse (worktree.go)
- Added comprehensive CLI tests for labels, priority formats, and reopen
- All tests passing in short mode
Addresses bd-6221bdcd
- Removes noisy version mismatch warnings on every bd upgrade
- Version field in metadata.json was redundant with daemon version checking via RPC
- Daemon version mismatches still detected via HealthResponse
- Removes checkVersionMismatch() function and related test file
- Updates .beads/.gitignore to properly ignore merge artifacts
Amp-Thread-ID: https://ampcode.com/threads/T-7ba8aff2-97a0-4d0c-9008-e858bdfadd61
Co-authored-by: Amp <amp@ampcode.com>
- Implement comprehensive schema probe in sqlite.New() that verifies all
expected tables and columns after migrations
- Add retry logic: if probe fails, retry migrations once
- Return clear fatal error with missing schema elements if probe still fails
- Enhance daemon version gating: refuse RPC if client has newer minor version
- Improve checkVersionMismatch messaging: verify schema before claiming upgrade
- Add schema compatibility check to bd doctor command
- Add comprehensive tests for schema probing
This prevents the silent migration failure bug where:
1. Migrations fail silently
2. Database queries fail with 'no such column' errors
3. Import logic misinterprets as 'not found' and tries INSERT
4. Results in cryptic UNIQUE constraint errors
Fixes#262
Amp-Thread-ID: https://ampcode.com/threads/T-0d7ae2c0-9f12-4f9b-85d1-1291488af150
Co-authored-by: Amp <amp@ampcode.com>
- import.go: Check raw bytes before JSON decoding using bytes.HasPrefix
- validate.go: Use bytes.Split and bytes.HasPrefix on raw data
- Added regression test TestAutoImportConflictMarkerFalsePositive
- Verified with vc-85 issue that triggered the bug
Amp-Thread-ID: https://ampcode.com/threads/T-3f81e22a-14b9-435b-8932-5641aadb7d31
Co-authored-by: Amp <amp@ampcode.com>
Without the 'file:' URI scheme prefix, SQLite treats query parameters
like '?mode=ro' as part of the filename instead of connection options.
This caused:
- Creation of bogus files named 'beads.db?mode=ro'
- Failure to read database version from metadata table
- bd doctor incorrectly reporting 'version pre-0.17.5 (very old)'
Fixed two sql.Open() calls in doctor.go:
- Line 317 (checkIssueIDs function)
- Line 403 (getDatabaseVersionFromPath function)
Now uses 'file:'+dbPath+'?mode=ro' pattern consistent with migrate.go.
Fixes#260
Amp-Thread-ID: https://ampcode.com/threads/T-ac9832d6-15e4-4e25-8027-5e8b640b190b
Co-authored-by: Amp <amp@ampcode.com>
When 'bd sync --import-only' completes, it imports JSONL changes into
the database but doesn't update the database file's modification time.
This causes 'bd doctor' to incorrectly warn that 'JSONL is newer than
database' even when they're in sync.
Root cause: SQLite in WAL mode writes to beads.db-wal; the main beads.db
mtime often doesn't change until a checkpoint. bd doctor compares JSONL
mtime to beads.db mtime, so it can misfire without an mtime bump.
The fix adds touchDatabaseFile() that:
- Only runs when import actually made changes (not dry-run, not unchanged)
- Sets DB mtime to max(JSONL mtime, now) + 1ns to handle clock skew
- Is best-effort (logs warning on failure, doesn't fail import)
- Includes tests for basic touch and clock skew scenarios
Fixes: bd-g3ey
When git pull encounters merge conflicts in .beads/beads.jsonl, the
post-merge hook runs 'bd sync --import-only' which previously failed
with an error message pointing users to manual resolution.
This commit adds automatic 3-way merge resolution as a fallback safety
net that works alongside the git merge driver.
Changes:
- Modified conflict detection in import.go to attempt automatic merge
- Added attemptAutoMerge() function that:
- Extracts git conflict stages (:1 base, :2 ours, :3 theirs)
- Invokes 'bd merge' command for intelligent field-level merging
- Writes merged result back and auto-stages the file
- Restarts import with merged JSONL on success
- Falls back to manual resolution instructions only if auto-merge fails
Defense-in-depth approach:
1. Primary: git merge driver prevents most conflicts during merge
2. Fallback: import auto-merge handles any that slip through
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
- Skip auto-import in PersistentPreRun for delete command
- Prevents resurrection of deleted issues from stale git JSONL
- Add TestBulkDeleteNoResurrection to prevent regression
- Verified with full test suite
Amp-Thread-ID: https://ampcode.com/threads/T-635e5cf4-fa2f-4ce3-9f05-43b48010baae
Co-authored-by: Amp <amp@ampcode.com>
Previously the hook redirected stderr to /dev/null, hiding useful error
messages like 'Git conflict markers detected'. Users only saw a generic
warning with no indication of the root cause.
Now captures and displays the actual error output, making it immediately
clear what went wrong (e.g., merge conflicts in JSONL).
Fixes bd-nszi
Amp-Thread-ID: https://ampcode.com/threads/T-6231e968-2c06-44ad-855d-bb5fafe452f6
Co-authored-by: Amp <amp@ampcode.com>
- Add --whats-new flag to bd info command
- Display agent-relevant changes from last 3 versions
- Support both human-readable and JSON output
- Add version changelog data structure with workflow-impacting changes
- Add comprehensive tests for version changes structure
- Update AGENTS.md with whats-new documentation
Helps agents efficiently learn what changed between bd versions without
re-reading full documentation. Addresses weekly major version releases
requiring workflow adaptations.
Closes bd-eiz9
Amp-Thread-ID: https://ampcode.com/threads/T-5fe7e93d-7398-41c5-94bf-e914f2b331dd
Co-authored-by: Amp <amp@ampcode.com>
- Created SnapshotManager type in snapshot_manager.go
- Encapsulates all snapshot operations with clean API
- Added SnapshotStats for observability
- Reduced deletion_tracking.go from 557 to 153 lines (72% reduction)
- Enhanced merge output with statistics
- All tests passing
Amp-Thread-ID: https://ampcode.com/threads/T-d82acce9-170d-4e58-b227-fd33d48b8598
Co-authored-by: Amp <amp@ampcode.com>
Agents were failing with 'bd import' after nuking the database.
Now bd import automatically:
- Creates .beads/ directory if missing
- Detects prefix from imported issues (analyzes JSONL)
- Falls back to directory name if no issues
- Initializes database before proceeding
This fixes the common agent workflow: rm .beads/beads.db && bd import
Amp-Thread-ID: https://ampcode.com/threads/T-3ace45ce-3cd6-46ae-a201-39c3d7f48f0b
Co-authored-by: Amp <amp@ampcode.com>
Make bd list print exactly one line per issue by default to fix agent
miscounting. Agents were getting confused by the multi-line format and
incorrectly counting open issues.
The new compact format shows:
bd-zo7o [P0] [task] open @assignee [labels] - Title
The original detailed multi-line format is preserved behind --long flag.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
- Detect uncommitted changes in .beads/issues.jsonl
- Warn users when database matches working tree but differs from git HEAD
- Clarify import status messages (working tree vs git sync)
- Add comprehensive tests for dirty working tree scenarios
- Prevents false confidence about sync status
Amp-Thread-ID: https://ampcode.com/threads/T-5a0f1045-a690-42ef-8bfc-f8cf30ee4084
Co-authored-by: Amp <amp@ampcode.com>
- Add --analyze mode to export candidates without API key
- Add --apply mode to accept agent-provided summaries
- Move --auto mode for legacy AI-powered compaction
- Update documentation for new workflow
- Addresses GH #243 complaint about API key requirement
Implements bd-jx90: simple cleanup command without API key requirement.
Features:
- Delete all closed issues with --force
- Filter by age with --older-than N (days)
- Preview with --dry-run
- Cascade deletion with --cascade
- JSON output support
Usage:
bd cleanup --force # Delete all closed
bd cleanup --older-than 30 --force # Delete >30 days old
bd cleanup --dry-run # Preview
Closes bd-jx90
Amp-Thread-ID: https://ampcode.com/threads/T-8d905db0-4ec7-411e-95de-1f044219dc9c
Co-authored-by: Amp <amp@ampcode.com>
- Add failIfProductionDatabase() check in Go test helpers
- Add temp directory verification in RPC test setup
- Create conftest.py with pytest safety checks for Python tests
- Add BEADS_TEST_MODE env var to mark test execution
- Tests now fail fast if they detect production .beads/ usage
This prevents test issues from polluting the production database
like the incident on Nov 7, 2025 where 29+ test issues were created
in .beads/beads.db instead of isolated test databases.
Resolves: bd-2c5a
Amp-Thread-ID: https://ampcode.com/threads/T-635a8807-1120-4122-a0cb-4c21970362ce
Co-authored-by: Amp <amp@ampcode.com>
- Add BD_RPC_DEBUG=1 for lightweight timing logs to stderr
- Log socket path, socket exists check, dial timing, health check timing
- Improve daemon status message when lock not held
- Helps field triage of connection issues without verbose daemon logs
- Fixes bd-j7e2
Improvements:
1. Added top-level panic recovery in runDaemonLoop
- Captures stack trace and logs to daemon.log
- Writes daemon-error file with crash details for user visibility
- Cleans up PID file on panic
2. Replaced os.Exit calls with return statements where possible
- Allows deferred cleanup to run (lock release, socket removal, etc)
- Improves graceful shutdown on errors
3. Enhanced stopDaemon forced-kill path
- Removes stale socket file after process.Kill()
- Prevents socket artifacts from accumulating
4. Added integration tests for crash recovery
Closes bd-vcg5
Prevents data loss when exporting stale database by comparing issue IDs,
not just counts. Detects both scenarios:
- Database has fewer issues than JSONL
- Database has different issues than JSONL (same count)
Shows specific missing issue IDs in error. Allows override with --force.
Includes comprehensive tests for all scenarios.
- Add ParentPID field to DaemonLockInfo struct
- Daemon monitors parent process every 10 seconds
- Gracefully exits when parent process dies
- Prevents accumulation of orphaned daemons from dead sessions
- Fixes race conditions from multiple daemons on same database
Closes bd-zpnq
* fix: Use correct SQLite driver name 'sqlite3' instead of 'sqlite'
The ncruces/go-sqlite3 driver registers as 'sqlite3', but doctor.go
and example code were using 'sqlite', causing 'unknown driver' errors.
This fix corrects all sql.Open() calls to use the proper driver name:
- cmd/bd/doctor.go: 6 instances fixed
- docs/EXTENDING.md: 2 documentation examples updated
- examples/bd-example-extension-go/: Fixed example code and README
Fixes#230
Amp-Thread-ID: https://ampcode.com/threads/T-1e8c5473-cb79-4457-be07-4517bfdb73f4
Co-authored-by: Amp <amp@ampcode.com>
* Revert CGO_ENABLED back to 0 for pure-Go SQLite driver
The ncruces/go-sqlite3 driver is pure-Go and doesn't require CGO.
The previous change to CGO_ENABLED=1 in commit f9771cd was an
attempted fix for #230, but the real issue was the driver name
mismatch ('sqlite' vs 'sqlite3'), which is now fixed.
Benefits of CGO_ENABLED=0:
- Simpler cross-compilation (no C toolchain required)
- Smaller binaries
- Faster builds
- Matches the intended design of the pure-Go driver
---------
Co-authored-by: Amp <amp@ampcode.com>
Add validation in bd init to detect if current directory is inside
a .beads directory and exit with clear error message. This prevents
the common issue of accidentally creating .beads/.beads/ nested
directories.
- Created internal/util/strings.go with NormalizeLabels function
- Added comprehensive tests in internal/util/strings_test.go
- Updated internal/rpc/server_issues_epics.go to use util.NormalizeLabels
- Updated cmd/bd/list.go and cmd/bd/ready.go to use util.NormalizeLabels
- Updated cmd/bd/list_test.go to use util.NormalizeLabels
- Removed duplicate implementations
- All tests pass
Fixes bd-fb95094c.6
Amp-Thread-ID: https://ampcode.com/threads/T-edb3c286-cd60-4231-94cd-edaf75d84a3d
Co-authored-by: Amp <amp@ampcode.com>
- Call getMultiRepoJSONLPaths() once at sync start instead of 3 times
- Eliminates redundant config lookups and path constructions
- Performance optimization for multi-repo workflows
Optimization to avoid JSON unmarshalling when strings match exactly (common case).
Simple 1-line change instead of complex streaming rewrite for P3 issue.
- Add snapshotMetadata struct with version, timestamp, commit SHA
- Validate snapshots are <1 hour old, from compatible version
- Auto-cleanup stale snapshots from interrupted syncs
- All snapshot functions now write/validate metadata files
- Fixes issue where crash/kill -9 left stale snapshots
- Added getMultiRepoJSONLPaths() helper to enumerate all JSONL files
- Updated daemon_sync.go to capture/update snapshots for each repo
- Added TestMultiRepoDeletionTracking to verify fix
- Added TestMultiRepoSnapshotIsolation for isolation guarantees
Previously, deletion tracking only worked for single-repo mode because
snapshot operations were hardcoded to the primary JSONL path. This fix
ensures snapshots are managed per-repository in multi-repo mode.
