Commit Graph

419 Commits

Author SHA1 Message Date
Steve Brown
b7242a67d1 fix: load types.custom from config.yaml during init auto-import (GH#1225) (#1226)
During bd init, auto-import fails with "invalid issue type" errors even
when types.custom is defined in config.yaml. This happens because custom
types are read from the database, but the database is being created
during init and doesn't have the config set yet.

Changes:
- Add GetCustomTypesFromYAML() to internal/config/config.go to read
  types.custom from config.yaml via viper
- Modify GetCustomTypes() in sqlite/config.go to fallback to config.yaml
  when the database doesn't have types.custom configured
- Add tests for GetCustomTypesFromYAML()

This allows fresh clones with custom types defined in config.yaml (e.g.,
Gas Town types like molecule, gate, convoy, agent, event) to successfully
auto-import their JSONL during bd init.

Fixes GH#1225

Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-20 22:34:22 -08:00
beads/crew/collins
458fb7197a fix(sqlite): handle text timestamps in scan for cross-driver compatibility
The ncruces/go-sqlite3 driver does not always auto-convert TEXT columns
to time.Time. This caused scan errors on updated_at/created_at fields,
blocking witness startup.

Fix: Scan timestamps into sql.NullString and parse with parseTimeString()
helper that handles RFC3339Nano, RFC3339, and SQLite native formats.

Fixes: bd-4dqmy

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-20 20:48:08 -08:00
Steven Syrek
82426423fe fix(sqlite): Add missing rows.Err() checks after row iteration (#1141)
The scanIssues and scanIssuesWithDependencyType helper functions were
not checking rows.Err() after iterating through query results. This
could cause errors during iteration (connection drops, context
cancellation, etc.) to be silently ignored.

Per Go database/sql best practices, rows.Err() should always be checked
after a rows.Next() loop completes to catch any errors that occurred
during iteration.

Co-authored-by: Steven Syrek <steven.syrek@deepl.com>
Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-19 10:12:26 -08:00
Daniel Sauer
4fffdb7fae fix(sqlite): add missing agent fields to scanIssues and related queries (#1176)
The scanIssues() function and multiple SQL queries were not selecting or
scanning agent-related fields (hook_bead, role_bead, agent_state, last_activity,
role_type, rig, mol_type) and time-based scheduling fields (due_at, defer_until).

This caused bd list --json to return null for last_activity even when the
database contained valid timestamps, preventing proper agent health monitoring.

Updated files:
- dependencies.go: scanIssues() variable declarations, scan calls, assignments
- queries.go: SearchIssues query
- labels.go: GetIssuesByLabel query
- ready.go: GetReadyWork and GetNewlyUnblockedByClose queries
- transaction.go: GetIssue query, SearchIssues query, scanIssueRow()

Fixes steveyegge/beads#1175
2026-01-19 10:11:03 -08:00
beads/crew/emma
4f0f5744a6 feat(types): remove Gas Town types from core built-in types
Core beads built-in types now only include work types:
- bug, feature, task, epic, chore

Gas Town types (molecule, gate, convoy, merge-request, slot, agent,
role, rig, event, message) are now "well-known custom types":
- Constants still exist for code convenience
- Require types.custom configuration for validation
- bd types command shows core types and configured custom types

Changes:
- types.go: Separate core work types from well-known custom types
- IsValid(): Only accepts core work types
- bd types: Updated to show core types and custom types from config
- memory.go: Use ValidateWithCustom for custom type support
- multirepo.go: Only check core types as built-in
- Updated all tests to configure custom types

This allows Gas Town (and other projects) to define their own types
via config while keeping beads core focused on work tracking.

Closes: bd-find4

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-17 05:07:11 -08:00
Steve Yegge
b6155c69f2 Merge pull request #1130 from aleiby/fix/delete-marks-dependents-dirty
fix: Mark dependent issues dirty when deleting to prevent orphan deps in JSONL
2026-01-17 00:05:41 -08:00
gastown/crew/george
9ecdc00664 feat(types): add "enhancement" as alias for "feature" type
Support --type enhancement as an alias for --type feature when creating
issues. The normalization happens before validation to ensure consistency
across all code paths.

Closes gt-hzanoe

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-16 15:44:33 -08:00
mayor
0c64edfc09 fix: Mark dependent issues dirty when deleting to prevent orphan deps in JSONL
When an issue is deleted, issues that depend on it were not being marked
dirty. This caused stale dependency references to persist in JSONL after
the target issue was deleted, because the dependent issues were never
re-exported.

This manifests as FK validation failures during multi-repo hydration:
"foreign key violation: issue X depends on non-existent issue Y"

The fix queries for dependent issues before deleting and marks them dirty
so they get re-exported without the stale dependency reference.

Adds test: TestDeleteIssueMarksDependentsDirty

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-16 12:27:36 -08:00
aleiby
490e9f695f fix: exclude role and rig types from bd ready (#1105)
Role and rig beads are reference metadata that should never be closed
or appear as actionable work. They are similar to agent beads which
are already excluded.

- Add 'role' and 'rig' to the issue type exclusion list in GetReadyWork
- Update comments to document the excluded types

Fixes confusion where role/rig beads appeared in bd ready output,
leading agents to try to close them as regular work items.

Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-15 19:20:58 -08:00
Peter Chanthamynavong
0a48519561 feat(context): centralize RepoContext API for git operations (#1102)
Centralizes repository context resolution via RepoContext API, fixing bugs where git commands run in the wrong repo when BEADS_DIR points elsewhere or in worktree scenarios.
2026-01-15 07:55:08 -08:00
beads/crew/dave
9e639da5ba fix(create): allow creating issues with explicit ID that matches tombstone (bd-0gm4r)
When using `bd create --id=<id>` where the ID matches an existing
tombstone (from `bd delete --hard --force`), the creation now succeeds
by first deleting the tombstone and all related records.

This enables use cases like polecat respawn where a worker needs to
recreate an issue with the same ID.

Changes:
- queries.go: Check for tombstone before insert, delete it if found
  (cleans up events, labels, dependencies, comments, dirty_issues)
- tombstone_test.go: Add regression test

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

Executed-By: beads/crew/dave
Rig: beads
Role: crew
2026-01-14 20:36:47 -08:00
dennis
f703237c3d fix(ready): prevent wisps from appearing in bd ready
Add multiple layers of defense against misclassified wisps:
- Importer auto-detects -wisp- pattern and sets ephemeral flag
- GetReadyWork excludes -wisp- IDs via SQL LIKE clause
- Doctor check 26d detects misclassified wisps in JSONL

This addresses recurring issue where wisps with missing ephemeral
flag would pollute bd ready output after JSONL import.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-13 00:14:12 -08:00
garnet
e8a4474788 fix(storage): use strict INSERT for batch issue creation (GH#956)
Add insertIssuesStrict function that uses plain INSERT instead of
INSERT OR IGNORE. Update bulkInsertIssues and transactional CreateIssues
to use the strict variant.

This fixes a race condition where INSERT OR IGNORE could silently skip
duplicate insertions, but the code would still attempt to record events
for those "inserted" issues, causing FOREIGN KEY constraint failures.

The strict INSERT will now fail explicitly if a duplicate is encountered,
which should never happen since checkForExistingIDs runs first within
the same transaction.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-12 19:42:04 -08:00
beads/crew/dave
ec1a32b9a8 fix(storage): add reconnectMu RLock protection to prevent race condition (#1054)
Add missing reconnectMu.RLock() protection to storage methods that were
vulnerable to the same race condition fixed in GH#607. The FreshnessChecker
can trigger reconnect() which closes s.db while queries are in flight,
causing "database is closed" errors during daemon export operations.

Protected methods:
- labels.go: GetLabelsForIssues (GetLabels intentionally unprotected - called from GetIssue which holds lock)
- comments.go: GetIssueComments, GetCommentsForIssues
- dependencies.go: GetDependencyCounts, GetDependencyRecords, GetAllDependencyRecords, GetDependencyTree, loadDependencyGraph
- config.go: SetConfig, GetConfig, GetAllConfig, DeleteConfig, SetMetadata, GetMetadata
- dirty.go: MarkIssueDirty, GetDirtyIssues, GetDirtyIssueHash, GetDirtyIssueCount
- events.go: GetEvents, GetStatistics, GetMoleculeProgress
- hash.go: All hash methods
- hash_ids.go: GetNextChildID, ensureChildCounterUpdated (getNextChildNumber unprotected - called internally)

Internal helpers called from already-locked contexts intentionally omit
RLock to avoid deadlock (Go's RWMutex doesn't support recursive locking).

Fixes: bd-vx7fp

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

Executed-By: beads/crew/dave
Rig: beads
Role: crew
2026-01-12 18:29:42 -08:00
Nicolas Suzor
7fe824781a fix: use route prefix when creating issues in rigs (#1028)
* fix(create): Use prefix from routes.jsonl when creating issues with --rig

When using `bd create --rig <name>`, the prefix from routes.jsonl was
being discarded. This caused issues to be created with the target
database's default prefix instead of the route's prefix.

This is particularly problematic when using the redirect mechanism to
share a single database across multiple rigs - the redirect correctly
routes to the shared database, but the prefix was not being applied.

The fix:
1. Capture the prefix from routing.ResolveBeadsDirForRig()
2. Temporarily override the target database's issue_prefix config
3. Restore the original prefix after issue creation

Example scenario that now works:
- routes.jsonl: {"prefix": "aops-", "path": "src/academicOps"}
- src/academicOps/.beads/redirect points to ~/writing/.beads
- `bd create --rig aops "Test"` now creates aops-xxx instead of ns-xxx

Co-Authored-By: Claude <noreply@anthropic.com>

* fix(create): pass prefix via struct field instead of mutating config

The previous approach temporarily mutated the database's issue_prefix
config during cross-rig issue creation, then restored it afterward.
This was fragile in multi-user scenarios where concurrent operations
could see the wrong prefix.

New approach:
- Add PrefixOverride field to types.Issue
- CreateIssue checks PrefixOverride first, uses it if set
- createInRig sets issue.PrefixOverride instead of mutating config

This passes state as a parameter rather than mutating shared state,
making it safe for concurrent multi-user access.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude <noreply@anthropic.com>
2026-01-12 01:20:32 -08:00
beads/crew/giles
0248895298 fix(sqlite): rebuild blocked_issues_cache after rename-prefix (GH#1016)
RenameDependencyPrefix updates issue IDs in the dependencies table but
was not rebuilding the blocked_issues_cache, leaving stale IDs in the
cache that no longer exist in the issues table.

Add invalidateBlockedCache() call at the end of RenameDependencyPrefix
to rebuild the cache with the new issue IDs.

Fixes: GH#1016

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-11 20:45:09 -08:00
beads/crew/fang
0de6b10ac0 fix: add missing crystallizes column to SELECT queries and remove duplicate
- Remove duplicate crystallizes column from schema.go
- Add crystallizes to SELECT in transaction.go SearchIssues
- Add crystallizes to SELECT in ready.go GetReadyWork and GetNewlyUnblockedByClose
- Add crystallizes to SELECT in labels.go GetIssuesByLabel
- Add missing placeholder in issues.go INSERT VALUES
- Update migrations_test.go schema to include crystallizes column

Fixes test failures caused by schema/query column count mismatches.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-10 23:55:16 -08:00
beads/crew/fang
1d42732ad1 fix: add TypeRig constant and IsBuiltIn method (GH#1002)
- Add TypeRig IssueType constant for rig identity beads
- Add TypeRig to IsValid() switch statement
- Add IsBuiltIn() method for multi-repo hydration trust checks
- Add Crystallizes field to Issue struct and ComputeContentHash

Fixes validation rejecting documented issue types like 'rig' and 'agent'.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-10 23:46:44 -08:00
beads/crew/fang
f5cd36752d feat: add crystallizes column to sqlite storage
Adds crystallizes column for work economics (compounds vs evaporates)
per Decision 006. Includes migration 036 and updates to all INSERT/SELECT
queries in issues.go, queries.go, dependencies.go, and transaction.go.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-10 23:46:44 -08:00
beads/crew/dave
ac24a63187 fix: make tests resilient to project .beads/redirect
Tests were failing because beads.FindDatabasePath() follows the
project's .beads/redirect file, causing tests to find unexpected
databases. Fixed by:

- Setting BEADS_DIR in tests that need isolation from git repo detection
- Clearing BEADS_DIR in TestMain to prevent global contamination
- Updating migration test schema to include owner column

This ensures tests work correctly in crew directories that have
redirect files pointing to shared .beads directories.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

Executed-By: beads/crew/dave
Rig: beads
Role: crew
2026-01-10 22:38:04 -08:00
beads/crew/dave
f79e636000 feat: consolidate schema changes from crew directories
Merges schema additions from crew/fang, crew/giles, crew/grip, and crew/wolf:

- crystallizes: bool field for work economics (compounds vs evaporates)
- work_type: WorkType field for assignment model (mutex vs open_competition)
- source_system: string field for federation adapter tracking
- quality_score: *float32 for aggregate quality (0.0-1.0)
- delegated-from: new dependency type for work delegation chains

Migrations properly sequenced as 037-040 (after existing 036 owner_column).

Also fixes test compilation errors for removed TypeRig and IsBuiltIn references.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

Executed-By: beads/crew/dave
Rig: beads
Role: crew
2026-01-10 22:38:04 -08:00
ruby
5605e590a3 fix(sqlite): prevent FK constraint failure on batch create (GH#956)
Add checkForExistingIDs check to transaction-based batch creation
(sqliteTxStorage.CreateIssues) before calling insertIssues. This
prevents INSERT OR IGNORE from silently skipping duplicate IDs,
which would cause FK constraint failures when recording events
for issues that weren't actually inserted.

Also fixes unrelated test bug: renamed parseCommaSeparated to
parseCommaSeparatedList in validators_test.go.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-10 22:02:03 -08:00
beads/refinery
50a079d3b7 fix: repair test build failures in types and sqlite packages
- Add TypeRig constant to IssueType enum
- Add IsBuiltIn() method to IssueType for multi-repo hydration trust logic
- Fix parseCommaSeparated -> parseCommaSeparatedList function name in test

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-10 22:00:32 -08:00
beads/crew/dave
ceb5769c75 feat: add owner field for human attribution in HOP CV chains
Add 'owner' field to Issue struct for tracking the human responsible
for the issue, distinct from 'created_by' which tracks the executor.
Owner is populated from git author email (GIT_AUTHOR_EMAIL or git
config user.email), per Decision 008 for CV accumulation.

Changes:
- Add Owner field to types.Issue with omitempty JSON tag
- Include Owner in content hash computation
- Add owner column migration (036_owner_column.go)
- Update all SQL queries to include owner field
- Add getOwner() helper using git author email fallback chain
- Populate owner in bd create command
- Add owner to RPC CreateArgs protocol

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

Executed-By: beads/crew/dave
Rig: beads
Role: crew
2026-01-10 19:28:08 -08:00
Erick Matsen
3f2b693bea fix: respect hierarchy.max-depth config setting (GH#995) (#997)
* fix: respect hierarchy.max-depth config setting (GH#995)

The hierarchy.max-depth config setting was being ignored because storage
implementations had the depth limit hardcoded to 3. This fix:

- Registers hierarchy.max-depth default (3) in config initialization
- Adds hierarchy.max-depth to yaml-only keys for config.yaml storage
- Updates SQLite and Memory storage to read max depth from config
- Adds validation to reject hierarchy.max-depth values < 1
- Adds tests for configurable hierarchy depth

Users can now set deeper hierarchies:
  bd config set hierarchy.max-depth 10

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* refactor: extract shared CheckHierarchyDepth function (GH#995)

- Extract duplicated depth-checking logic to types.CheckHierarchyDepth()
- Update sqlite and memory storage backends to use shared function
- Add t.Cleanup() for proper test isolation in sqlite test
- Add equivalent test coverage for memory storage backend
- Add comprehensive unit tests for CheckHierarchyDepth function

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-10 13:36:52 -08:00
beads/crew/dave
ee34003f02 fix: SQLite uses DELETE mode on WSL2 Windows filesystem (GH#920)
Auto-detect WSL2 environment with Windows filesystem paths (/mnt/c/, etc.)
and fall back to DELETE journal mode instead of WAL. SQLite WAL mode
does not work reliably across the WSL2/Windows 9P filesystem boundary
due to shared-memory limitations.

Detection checks:
1. Path matches /mnt/[a-z]/ pattern (Windows drive mount)
2. /proc/version contains microsoft or wsl

Fixes #920

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

Executed-By: beads/crew/dave
Rig: beads
Role: crew
2026-01-09 23:03:03 -08:00
grip
351f4c1dd7 fix(sync): initialize store after daemon disconnect (GH#984)
The sync command was closing the daemon connection without initializing
the direct store, leaving store=nil. This caused errors in post-checkout
hook when running bd sync --import-only.

Fixed by using fallbackToDirectMode() which properly closes daemon and
initializes the store.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-09 22:59:15 -08:00
wolf
0777bb907c fix: prevent FK constraint errors on concurrent issue creation (GH#956)
Root cause: CreateIssue used INSERT OR IGNORE which could silently skip
the insert (e.g., on duplicate ID from hash collision), then fail with
FOREIGN KEY constraint error when trying to record the creation event.

Fix: Add insertIssueStrict() that uses plain INSERT (fails on duplicates)
and use it for CreateIssue in both queries.go and transaction.go. The
existing insertIssue() with INSERT OR IGNORE is preserved for import
scenarios where duplicates are expected.

Added test TestCreateIssueDuplicateID to verify duplicate IDs are properly
rejected instead of silently ignored.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-09 22:59:06 -08:00
fang
a851104203 fix: prevent closing issues with open blockers (GH#962)
Added IsBlocked method to Storage interface that checks if an issue is
in the blocked_issues_cache and returns the blocking issue IDs.

The close command now checks for blockers before allowing an issue to
be closed:
- If an issue has open blockers, closing is blocked with an error message
- The --force flag overrides this check
- Works in both daemon mode (RPC) and direct storage mode
- Also handles cross-rig routed IDs

This addresses the bug where agents could close a bead even when it
depends on an open bug/issue.

Closes #962

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-09 22:57:07 -08:00
beads/crew/emma
576a517c59 feat(multirepo): trust non-built-in types during hydration (bd-9ji4z)
Implements federation trust model for multi-repo type validation:
- Built-in types are validated (catch typos)
- Non-built-in types trusted from source repos

Changes:
- Add IssueType.IsBuiltIn() method
- Add Issue.ValidateForImport() for trust-based validation
- Update upsertIssueInTx to use ValidateForImport

Closes: bd-dqwuf, bd-alpw2 | Epic: bd-9ji4z

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-09 14:12:48 -08:00
Andrey Taranov
e0b613d5b1 fix(sync): validate custom types in batch issue creation (#943)
Fix validation in batch issue creation to check custom types

Previously only validated custom statuses, causing sync to fail when JSONL
contained issues with types removed from core (agent, role, rig, convoy, slot).

Fixes: validation failed for issue: invalid issue type: agent
2026-01-07 20:45:58 -08:00
dave
a70c3a8cbe feat: extract Gas Town types from beads core (bd-i54l)
Remove Gas Town-specific issue types (agent, role, rig, convoy, slot)
from beads core. These types are now identified by labels instead:
- gt:agent, gt:role, gt:rig, gt:convoy, gt:slot

Changes:
- internal/types/types.go: Remove TypeAgent, TypeRole, TypeRig, TypeConvoy, TypeSlot constants
- cmd/bd/agent.go: Create agents with TypeTask + gt:agent label
- cmd/bd/merge_slot.go: Create slots with TypeTask + gt:slot label
- internal/storage/sqlite/queries.go, transaction.go: Query convoys by gt:convoy label
- internal/rpc/server_issues_epics.go: Check gt:agent label for role_type/rig label auto-add
- cmd/bd/create.go: Check gt:agent label for role_type/rig label auto-add
- internal/ui/styles.go: Remove agent/role/rig type colors
- cmd/bd/export_obsidian.go: Remove agent/role/rig/convoy type tag mappings
- Update all affected tests

This enables beads to be a generic issue tracker while Gas Town
uses labels for its specific type semantics.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

Executed-By: beads/crew/dave
Rig: beads
Role: crew
2026-01-06 22:18:37 -08:00
beads/crew/dave
b7358f17bf feat(types): add custom type support to beads config (bd-649s)
Add types.custom config key mirroring the status.custom pattern:
- Add CustomTypeConfigKey constant and GetCustomTypes() to storage interface
- Add IssueType.IsValidWithCustom() method for validation
- Add ValidateWithCustom() to Issue for combined status/type validation
- Update all validation call sites to use GetCustomTypes()
- Rename parseCustomStatuses to parseCommaSeparated for reuse

This enables Gas Town to register custom types like agent/role/rig/convoy
without hardcoding them in beads core, supporting the type extraction epic.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

Executed-By: beads/crew/dave
Rig: beads
Role: crew
2026-01-06 21:30:58 -08:00
beads/crew/dave
5dfb838d60 feat(completion): optimize ID prefix filtering and add completions to more commands
Improvements to shell completions from PR #935:

1. Add IDPrefix field to IssueFilter for efficient database-level filtering
   - Queries are now filtered at SQL level instead of fetching all issues
   - Updated sqlite, transaction, and memory stores to support IDPrefix

2. Add ValidArgsFunction to additional commands:
   - dep (add, remove, list, tree)
   - comments, comment (add)
   - delete
   - graph
   - label (add, remove, list)
   - duplicate, supersede
   - audit
   - move
   - relate, unrelate
   - refile
   - gate (show, resolve, add-waiter)

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

Executed-By: beads/crew/dave
Rig: beads
Role: crew
2026-01-06 19:05:34 -08:00
beads/crew/giles
2fb6fd074a fix(ci): address Windows test failures and timeout
- Extract inode function to platform-specific files (inode_unix.go,
  inode_windows.go) to fix syscall.Stat_t compile error on Windows
- Add skipOnWindows helper and skip Unix permission/symlink tests
  on Windows where chmod semantics differ
- Increase Windows test timeout from 10m to 20m since full test
  suite runs slower without race detector

Fixes Windows CI failures introduced when PR #904 expanded Windows
testing from smoke tests to full test suite.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-06 12:59:26 -08:00
Ryan
ffe0dca2a3 feat(daemon): unify auto-sync config for simpler agent workflows (#904)
* feat(daemon): unify auto-sync config for simpler agent workflows

## Problem

Agents running `bd sync` at session end caused delays in the Claude Code
"event loop", slowing development. The daemon was already auto-exporting
DB→JSONL instantly, but auto-commit and auto-push weren't enabled by
default when sync-branch was configured - requiring manual `bd sync`.

Additionally, having three separate config options (auto-commit, auto-push,
auto-pull) was confusing and could get out of sync.

## Solution

Simplify to two intuitive sync modes:

1. **Read/Write Mode** (`daemon.auto-sync: true` or `BEADS_AUTO_SYNC=true`)
   - Enables auto-commit + auto-push + auto-pull
   - Full bidirectional sync - eliminates need for manual `bd sync`
   - Default when sync-branch is configured

2. **Read-Only Mode** (`daemon.auto-pull: true` or `BEADS_AUTO_PULL=true`)
   - Only receives updates from team
   - Does NOT auto-publish changes
   - Useful for experimental work or manual review before sharing

## Benefits

- **Faster agent workflows**: No more `bd sync` delays at session end
- **Simpler config**: Two modes instead of three separate toggles
- **Backward compatible**: Legacy auto_commit/auto_push settings still work
  (treated as auto-sync=true)
- **Adaptive `bd prime`**: Session close protocol adapts when daemon is
  auto-syncing (shows simplified 4-step git workflow, no `bd sync`)
- **Doctor warnings**: `bd doctor` warns about deprecated legacy config

## Changes

- cmd/bd/daemon.go: Add loadDaemonAutoSettings() with unified config logic
- cmd/bd/doctor.go: Add CheckLegacyDaemonConfig call
- cmd/bd/doctor/daemon.go: Add CheckDaemonAutoSync, CheckLegacyDaemonConfig
- cmd/bd/init_team.go: Use daemon.auto-sync in team wizard
- cmd/bd/prime.go: Detect daemon auto-sync, adapt session close protocol
- cmd/bd/prime_test.go: Add stubIsDaemonAutoSyncing for testing

* docs: add comprehensive daemon technical analysis

Add daemon-summary.md documenting the beads daemon architecture,
memory analysis (explaining the 30-35MB footprint), platform support
comparison, historical problems and fixes, and architectural guidance
for other projects implementing similar daemon patterns.

Key sections:
- Architecture deep dive with component diagrams
- Memory breakdown (SQLite WASM runtime is the main contributor)
- Platform support matrix (macOS/Linux full, Windows partial)
- Historical bugs and their fixes with reusable patterns
- Analysis of daemon usefulness without database (verdict: low value)
- Expert-reviewed improvement proposals (3 recommended, 3 skipped)
- Technical design patterns for other implementations

* feat: add cross-platform CI matrix and dual-mode test framework

Cross-Platform CI:
- Add Windows, macOS, Linux matrix to catch platform-specific bugs
- Linux: full tests with race detector and coverage
- macOS: full tests with race detector
- Windows: full tests without race detector (performance)
- Catches bugs like GH#880 (macOS path casing) and GH#387 (Windows daemon)

Dual-Mode Test Framework (cmd/bd/dual_mode_test.go):
- Runs tests in both direct mode and daemon mode
- Prevents recurring bug pattern (GH#719, GH#751, bd-fu83)
- Provides DualModeTestEnv with helper methods for common operations
- Includes 5 example tests demonstrating the pattern

Documentation:
- Add dual-mode testing section to CONTRIBUTING.md
- Document RunDualModeTest API and available helpers

Test Fixes:
- Fix sync_local_only_test.go gitPull/gitPush calls
- Add gate_no_daemon_test.go for beads-70c4 investigation

* fix(test): isolate TestFindBeadsDir tests with BEADS_DIR env var

The tests were finding the real project's .beads directory instead of
the temp directory because FindBeadsDir() walks up the directory tree.
Using BEADS_DIR env var provides proper test isolation.

* fix(test): stop daemon before running test suite guard

The test suite guard checks that tests don't modify the real repo's .beads
directory. However, a background daemon running auto-sync would touch
issues.jsonl during test execution, causing false positives.

Changes:
- Set BEADS_NO_DAEMON=1 to prevent daemon auto-start from tests
- Stop any running daemon for the repo before taking the "before" snapshot
- Uses exec to call `bd daemon --stop` to avoid import cycle issues

* chore: revert .beads/issues.jsonl to upstream/main

Per CONTRIBUTING.md, .beads/issues.jsonl should not be modified in PRs.
2026-01-06 12:52:19 -08:00
beads/crew/fang
7b0f398f11 fix(lint): address gosec, misspell, and unparam warnings
- gate.go: fix "cancelled" → "canceled" misspelling, add #nosec for
  validated GitHub IDs in exec.Command, mark checkTimer escalated as
  intentionally false, rename unused ctx param
- sync_divergence.go: add #nosec for git commands with validated paths,
  mark unused path param
- sync_branch.go: add #nosec for .git/info/exclude permissions
- setup.go: add #nosec for config file permissions
- recipes.go: add #nosec for validated config file paths
- external_deps.go: add #nosec for SQL with generated placeholders

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-05 22:06:52 -08:00
beads/crew/wolf
d416d672db bench(sqlite): add isolated cache rebuild benchmarks (bd-zw72)
Add BenchmarkRebuildBlockedCache_Large and _XLarge to measure cache
rebuild performance in isolation.

Results show cache rebuild takes ~773ms at 10K issues and ~1.3s at 20K,
significantly slower than the ~50ms originally estimated in the issue.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-02 17:30:58 -08:00
beads/crew/grip
32a4a9e060 perf: batch external dep checks by project (bd-687v)
Optimize CheckExternalDeps to group refs by project and open each
external DB only once, checking all capabilities in a single query.

Before: If 10 issues depend on external:gastown:cap1, we opened
gastown's DB 10 times.

After: We open each external project's DB once, query for all
capabilities needed from that project, then close.

Also added deduplication in filterByExternalDeps to collect all
unique refs before checking, avoiding redundant checks for the
same ref across multiple issues.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-02 17:17:47 -08:00
onyx
a89f47cdf2 feat(gate): add bd gate discover for gh:run await_id auto-discovery (bd-z6kw)
Implements automatic discovery of GitHub workflow run IDs for gates
awaiting CI/CD completion. This enables the Refinery patrol to
auto-populate await_id for gh:run gates that were created without one.

Changes:
- Add `bd gate discover` command that:
  - Finds open gh:run gates without await_id
  - Queries recent GitHub workflow runs via gh CLI
  - Matches runs to gates using heuristics (branch, commit, time)
  - Updates gates with discovered run IDs

- Add `--await-id` flag to `bd update` for manual setting
- Add AwaitID to UpdateArgs in RPC protocol
- Add await_id to allowedUpdateFields in storage layer

Matching heuristics (scored, highest match wins):
- Commit SHA match: +100 points
- Branch match: +50 points
- Time proximity (<5min: +30, <10min: +20, <30min: +10)
- In-progress/queued status: +5 points

Usage:
  bd gate discover           # Auto-discover for all matching gates
  bd gate discover --dry-run # Preview without updating
  bd gate discover --branch main --limit 10

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-02 16:14:35 -08:00
Peter Chanthamynavong
d371baf2ca feat(dates): add --due and --defer timestamp options with natural language parsing (#847)
* feat(dates): add due date schema and --due flag

- Add due_at and defer_until columns to issues table via migration 035
- Implement --due flag on create command with ISO date parsing
- Extend RPC protocol and daemon to pass DueAt from CLI to storage
- Display DueAt and DeferUntil in show command output
- Update Issue type with new date fields

Users can now set due dates when creating issues, enabling deadline-based
task management.

* feat(dates): add compact duration parser (+6h, +1d, +2w)

- Create internal/timeparsing package with layered parser architecture
- Implement parseCompactDuration with regex pattern [+-]?\d+[hdwmy]
- Add comprehensive test suite (22 cases) for duration parsing
- Integrate into create.go with fallback to ISO format

Supports hours (h), days (d), weeks (w), months (m), and years (y).
Negative values allowed for past dates.

* feat(dates): add NLP parsing for natural language dates

Integrate olebedev/when library for natural language time expressions.
The layered parser now handles: compact duration → absolute formats → NLP.

Changes:
- Add olebedev/when dependency for NLP parsing
- Implement ParseNaturalLanguage and ParseRelativeTime functions
- Reorder layers: absolute formats before NLP to avoid misinterpretation
- Simplify create.go to use unified ParseRelativeTime
- Add comprehensive NLP test coverage (22 test cases)

Supports: tomorrow, next monday, in 3 days, 3 days ago

* feat(dates): add --defer flag to create/update/defer commands

Add time-based deferral support alongside existing status-based defer.
Issues can now be hidden from bd ready until a specific time.

Changes:
- Add --defer flag to bd create (sets defer_until on creation)
- Add --due and --defer flags to bd update (modify existing issues)
- Add --until flag to bd defer (combines status=deferred with defer_until)
- Add DueAt/DeferUntil fields to UpdateArgs in protocol.go

Supports: +1h, tomorrow, next monday, 2025-01-15

* feat(dates): add defer_until filtering to ready command

Add time-based deferral support to bd ready:

- Add --include-deferred flag to show issues with future defer_until
- Filter out issues where defer_until > now by default
- Update undefer to clear defer_until alongside status change
- Add IncludeDeferred to WorkFilter and RPC ReadyArgs

Part of GH#820: Relative Date Parsing (Phase 5)

* feat(dates): add polish and tests for relative date parsing

Add user-facing warnings when defer date is in the past to help catch
common mistakes. Expand help text with format examples and document
the olebedev/when September parsing quirk.

Tests:
- TestCreateSuite/WithDueAt, WithDeferUntil, WithBothDueAndDefer
- TestReadyWorkDeferUntil (ExcludesFutureDeferredByDefault, IncludeDeferredShowsAll)

Docs:
- CLAUDE.md quick reference updated with new flags
- Help text examples for --due, --defer on create/update

Closes: Phase 6 of beads-820-relative-dates spec

* feat(list): add time-based query filters for defer/due dates

Add --deferred, --defer-before, --defer-after, --due-before, --due-after,
and --overdue flags to bd list command. All date filters now support
relative time expressions (+6h, tomorrow, next monday) via the
timeparsing package.

Filters:
- --deferred: issues with defer_until set
- --defer-before/after: filter by defer_until date range
- --due-before/after: filter by due_at date range
- --overdue: due_at in past AND status != closed

Existing date filters (--created-after, etc.) now also support relative
time expressions through updated parseTimeFlag().

* build(nix): update vendorHash for olebedev/when dependency

The olebedev/when library was added for natural language date parsing
(GH#820). This changes go.sum, requiring an updated vendorHash in the
Nix flake configuration.
2026-01-01 20:06:13 -08:00
jasper
b73085962c feat: Implement Step.Gate evaluation (Phase 1: Human Gates)
This implements Phase 1 of the Step.Gate feature (bd-7zka.2):

- bd cook now creates gate issues for steps with gate fields
- Gate issues have type=gate and block the gated step via dependency
- bd list filters out gate issues by default (use --include-gates to show)
- New bd gate command with list and resolve subcommands

Gate types supported in Phase 1:
- human: Manual closure via bd close or bd gate resolve

Implementation details:
- createGateIssue() in cook.go creates gate issues with proper metadata
- collectSteps() creates gate dependencies when processing gated steps
- IssueFilter.ExcludeTypes added to storage layer for type-based filtering
- Gate command provides dedicated UX for gate management

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-01 16:25:59 -08:00
Jordan Hubbard
aa2ea48bf2 feat: add FreeBSD release builds (#832)
* feat: add FreeBSD release builds

Co-authored-by: factory-droid[bot] <138933559+factory-droid[bot]@users.noreply.github.com>

* chore: allow manual release dispatch

Co-authored-by: factory-droid[bot] <138933559+factory-droid[bot]@users.noreply.github.com>

* fix: stabilize release workflow on fork

Co-authored-by: factory-droid[bot] <138933559+factory-droid[bot]@users.noreply.github.com>

* fix: clean zig download artifact

Co-authored-by: factory-droid[bot] <138933559+factory-droid[bot]@users.noreply.github.com>

* fix: use valid zig target for freebsd arm

Co-authored-by: factory-droid[bot] <138933559+factory-droid[bot]@users.noreply.github.com>

* fix: disable freebsd arm release build

Co-authored-by: factory-droid[bot] <138933559+factory-droid[bot]@users.noreply.github.com>

* fix: switch freebsd build to pure go

Co-authored-by: factory-droid[bot] <138933559+factory-droid[bot]@users.noreply.github.com>

* fix: skip release publishing on forks

Co-authored-by: factory-droid[bot] <138933559+factory-droid[bot]@users.noreply.github.com>

* fix: satisfy golangci-lint for release PR

---------

Co-authored-by: factory-droid[bot] <138933559+factory-droid[bot]@users.noreply.github.com>
2026-01-01 10:51:51 -08:00
beads/crew/dave
b362b36824 feat: add session_id field to issue close/update mutations (bd-tksk)
Adds closed_by_session tracking for entity CV building per Gas Town
decision 009-session-events-architecture.md.

Changes:
- Add ClosedBySession field to Issue struct
- Add closed_by_session column to issues table (migration 034)
- Add --session flag to bd close command
- Support CLAUDE_SESSION_ID env var as fallback
- Add --session flag to bd update for status=closed
- Display closed_by_session in bd show output
- Update Storage interface to include session parameter in CloseIssue

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

Executed-By: beads/crew/dave
Rig: beads
Role: crew
2025-12-31 13:14:15 -08:00
beads/crew/fang
0a96b10bba feat: add bd mol progress command for efficient molecule monitoring (bd-8xnf)
Adds a new `bd mol progress` command that shows molecule progress using
indexed queries instead of loading all steps into memory. This makes it
suitable for mega-molecules with millions of steps.

Features:
- Efficient SQL-based counting via idx_dependencies_depends_on_type index
- Progress display: completed / total (percentage)
- Current step identification
- Rate calculation from closure timestamps
- ETA estimation
- JSON output support

New storage interface method: GetMoleculeProgress(ctx, moleculeID)

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-31 12:35:41 -08:00
Steve Yegge
430c6bba9b Merge remote-tracking branch 'origin/fix/actor-on-status-events'
# Conflicts:
#	.beads/issues.jsonl
2025-12-30 18:14:27 -08:00
Steve Yegge
b919c47fd8 Exclude agent type from bd ready by default
Agent beads are identity/state tracking beads for agents, not actionable work items.
2025-12-30 18:13:12 -08:00
Steve Yegge
7d4e8e2db9 fix: read operations no longer modify database file (GH#804)
Add SQLite read-only mode for commands that only query data (list, ready,
show, stats, blocked, count, search, graph, duplicates, comments, export).

Changes:
- Add NewReadOnly() and NewReadOnlyWithTimeout() to sqlite package
  - Opens with mode=ro to prevent any file writes
  - Skips WAL pragma, schema init, and migrations
  - Skips WAL checkpoint on Close()
- Update main.go to detect read-only commands and use appropriate opener
- Skip auto-migrate, FlushManager, and auto-import for read-only commands
- Add tests verifying file mtime is unchanged after read operations

This fixes the issue where file watchers (like beads-ui) would go into
infinite loops because bd list/show/ready modified the database file.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-30 16:47:38 -08:00
Steve Yegge
6d84701a5f fix: migration 022 fails with SQL syntax error on v0.30.3 upgrade
db.Exec was being passed %s format specifiers directly in the SQL
string, but db.Exec does not do printf-style formatting - it uses the
variadic args as SQL parameter bindings. This caused the literal %s
to be sent to SQLite, which failed with near percent: syntax error.

Fixed by using fmt.Sprintf to interpolate the column expressions into
the SQL string before passing to db.Exec.

Added regression test that creates an old-schema database with edge
columns (replies_to, relates_to, duplicate_of, superseded_by) and
verifies migration 022 completes successfully.

Fixes #809

Generated with Claude Code

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-30 16:45:01 -08:00
Steve Yegge
21a0ff6d0d Add type: event for state transitions (bd-ecmd)
Adds TypeEvent issue type for recording operational state changes as
immutable beads. Events capture:
- event_category: namespaced category (e.g., patrol.muted, agent.started)
- event_actor: entity URI who caused the event
- event_target: entity URI or bead ID affected
- event_payload: event-specific JSON data

Changes:
- Add TypeEvent constant and IsValid() support in types.go
- Add event fields to Issue struct with ComputeContentHash support
- Add --event-category/actor/target/payload flags to bd create
- Add event fields to RPC CreateArgs and UpdateArgs
- Add migration 033_event_fields to add columns to issues table
- Update insertIssue and queries to include event fields
- Fix migrations_test.go for new column requirements

This enables:
- bd activity --follow showing events
- bd list --type=event --target=agent:deacon
- Full audit trail for operational state
- HOP-compatible transaction records

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-30 16:27:59 -08:00