- Check existing JSONL issues before falling back to directory name on initialization
- Implement readFirstIssueFromJSONL() to extract prefix from first issue
- Added tests for readFirstIssueFromJSONL
- Removes noisy version mismatch warnings on every bd upgrade
- Version field in metadata.json was redundant with daemon version checking via RPC
- Daemon version mismatches still detected via HealthResponse
- Removes checkVersionMismatch() function and related test file
- Updates .beads/.gitignore to properly ignore merge artifacts
Amp-Thread-ID: https://ampcode.com/threads/T-7ba8aff2-97a0-4d0c-9008-e858bdfadd61
Co-authored-by: Amp <amp@ampcode.com>
Add validation in bd init to detect if current directory is inside
a .beads directory and exit with clear error message. This prevents
the common issue of accidentally creating .beads/.beads/ nested
directories.
- TestSyncBranchPerformance: Increase Windows threshold to 500ms (was 150ms)
Windows git operations are ~3x slower than Unix
- TestCompactTier1: Fix eligibility by using 7-day minimum and 8-day closure
Changed compact_tier1_days from 0 to 7 to properly test eligibility checks
- Nix flake: Update vendorHash for current go.mod dependencies
sha256-cS2saiyKMgw4cXSc2INBHNJfJz5300ybI6Vxda1vLGk=
- Lint fixes:
- Remove unused 'quiet' parameter from createConfigYaml
- Change template file permissions from 0644 to 0600 (gosec G306)
- Add nosec comment for sanitized file path (gosec G304)
GH #210: bd init --no-db was creating config.yaml but leaving
no-db commented out, forcing users to pass --no-db on every command.
Changes:
- Modified createConfigYaml() to accept noDbMode parameter
- When true, writes 'no-db: true' instead of '# no-db: false'
- Added TestInitNoDbMode() to verify end-to-end workflow
The config reading logic was already in place (main.go:122), just needed
to write the correct value during init.
Fixes bd-5cny
Amp-Thread-ID: https://ampcode.com/threads/T-2c569435-6291-40e8-b39b-c33fd317d853
Co-authored-by: Amp <amp@ampcode.com>
Problem: bd init --no-db returned early (line 131) before creating config files,
causing 'no beads database found' errors on subsequent commands.
Solution:
- Extracted createConfigYaml() helper function
- Call it in both --no-db and normal paths
- Create metadata.json in --no-db path before early return
Fixes bd-c66a
- Created internal/syncbranch package with validation and env var support
- Added --branch flag to bd init command
- Enhanced bd config get/set to validate sync.branch
- Added BEADS_SYNC_BRANCH environment variable support
- Comprehensive tests for branch name validation
- Supports precedence: env var > database config > empty (current branch)
- Renamed config.json to metadata.json to clarify purpose (database metadata)
- Fixed config.yaml/config.json conflict by making Viper explicitly load only config.yaml
- Added automatic migration from config.json to metadata.json on first read
- Fixed jsonOutput variable shadowing across 22 command files
- Updated bd init to create both metadata.json and config.yaml template
- Fixed 5 failing JSON output tests
- All tests passing
Resolves config file confusion and makes config.yaml work correctly.
Closes#178 (global flags), addresses config issues from #193
Amp-Thread-ID: https://ampcode.com/threads/T-e6ac8192-e18f-4ed7-83bc-4a5986718bb7
Co-authored-by: Amp <amp@ampcode.com>
- Add nolint:gosec comments for safe file operations
- G304: File reads from validated/secure paths
- G306/G302: JSONL/error files need 0644 for sharing/debugging
- G204: Subprocess launches with validated arguments
- G104: Deferred file close errors are non-critical
- G115: Safe integer conversions in backoff
- G201: SQL placeholders for IN clause expansion
All warnings are for intentional behavior that is safe in context.
Amp-Thread-ID: https://ampcode.com/threads/T-d78f2780-4709-497f-97b0-035ca8c809e1
Co-authored-by: Amp <amp@ampcode.com>
- Added CanonicalDatabaseName constant (beads.db) and LegacyDatabaseNames list
- Updated bd init to use canonical name via constant
- Added daemon validation to reject non-canonical database names
- Updated bd migrate to use canonical name constant
- Enhanced FindDatabasePath to warn when using legacy database names
- All database discovery now prefers beads.db with backward compatibility
Closes bd-165
- Create internal/configfile package for config.json handling
- bd init now creates .beads/config.json with database, version, and jsonl_export fields
- Database discovery checks config.json first, falls back to beads.db
- Update .gitignore to not ignore config.json (part of repo state)
- Update test to expect beads.db and config.json
- Backward compatible with existing beads.db-only setups
- Changed bd init to always create beads.db instead of {prefix}.db
- Added migration logic to detect and rename old databases
- Updated findDatabaseInTree to prefer beads.db and warn on multiple .db files
- Daemon now refuses to start if multiple .db files exist (ambiguity error)
- Updated tests to expect beads.db instead of prefix-based naming
- Tested migration, ambiguity detection, and warning messages
Remove support for the legacy .beads/nodb_prefix.txt file and use
the cleaner config.yaml approach exclusively for setting the issue
prefix. This simplifies the configuration system and makes it more
consistent.
Changes:
- Remove nodb_prefix.txt creation in cmd/bd/init.go
- Remove nodb_prefix.txt check in cmd/bd/nodb.go detectPrefix()
- Update error message to recommend config.yaml instead
- Update documentation to reflect config.yaml-only approach
New prefix detection order for --no-db mode:
1. issue-prefix in config.yaml (if set)
2. Common prefix from existing issues (if all share same prefix)
3. Current directory name (fallback)
Users should now set the prefix in .beads/config.yaml:
issue-prefix: "myproject"
Generated with [Claude Code](https://claude.ai/code)
via [Happy](https://happy.engineering)
Co-Authored-By: Claude <noreply@anthropic.com>
Co-Authored-By: Happy <yesreply@happy.engineering>
Allow setting issue prefix via config.yaml that works independently
of --no-db mode. This provides a consistent way to set the prefix
across the entire repository.
Precedence order:
1. --prefix flag (highest)
2. issue-prefix in config.yaml
3. .beads/nodb_prefix.txt (no-db mode only)
4. Auto-detect from directory name (lowest)
Changes:
- Add issue-prefix to config defaults in internal/config/config.go
- Update cmd/bd/init.go to read from config before auto-detecting
- Update cmd/bd/nodb.go detectPrefix to check config.yaml
- Update .beads/config.yaml with documentation and example
Usage:
# .beads/config.yaml
issue-prefix: "myproject"
# Or via environment variable
BD_ISSUE_PREFIX=myproject bd init
This makes the prefix setting repository-scoped and automatically
respected by bd init in both normal and no-db modes.
Generated with [Claude Code](https://claude.ai/code)
via [Happy](https://happy.engineering)
Co-Authored-By: Claude <noreply@anthropic.com>
Co-Authored-By: Happy <yesreply@happy.engineering>
Implement --no-db mode to avoid SQLite database corruption in scenarios
where the same .beads directory is accessed from multiple processes
(e.g., host + container, multiple containers).
Changes:
- Add in-memory storage backend (internal/storage/memory/memory.go)
- Implements full Storage interface using in-memory data structures
- Thread-safe with mutex protection for concurrent access
- Supports all core operations: issues, dependencies, labels, comments
- Add JSONL persistence layer (cmd/bd/nodb.go)
- initializeNoDbMode(): Load .beads/issues.jsonl on startup
- writeIssuesToJSONL(): Atomic write-back after each command
- detectPrefix(): Smart prefix detection with fallback hierarchy
1. .beads/nodb_prefix.txt (explicit config)
2. Common prefix from existing issues
3. Current directory name (fallback)
- Integrate --no-db flag into command flow (cmd/bd/main.go)
- Add global --no-db flag to all commands
- PersistentPreRun: Initialize memory storage from JSONL
- PersistentPostRun: Write memory back to JSONL atomically
- Skip daemon and SQLite initialization in --no-db mode
- Extract common writeJSONLAtomic() helper to eliminate duplication
- Update bd init for --no-db mode (cmd/bd/init.go)
- Create .beads/nodb_prefix.txt instead of SQLite database
- Create empty issues.jsonl file
- Display --no-db specific initialization message
Code Quality:
- Refactored atomic JSONL writes into shared writeJSONLAtomic() helper
- Used by both flushToJSONL (SQLite mode) and writeIssuesToJSONL (--no-db mode)
- Eliminates ~90 lines of code duplication
- Ensures consistent atomic write behavior across modes
Usage:
bd --no-db init -p myproject
bd --no-db create "Fix bug" --priority 1
bd --no-db list
bd --no-db update myproject-1 --status in_progress
Benefits:
- No SQLite corruption from concurrent access
- Container-safe: perfect for multi-mount scenarios
- Git-friendly: direct JSONL diffs work seamlessly
- Simple: no daemon, no WAL files, just JSONL
Test Results (go test ./...):
- ✓ github.com/steveyegge/beads: PASS
- ✗ github.com/steveyegge/beads/cmd/bd: 1 pre-existing failure (TestAutoFlushErrorHandling)
- ✓ github.com/steveyegge/beads/internal/compact: PASS
- ✗ github.com/steveyegge/beads/internal/rpc: 1 pre-existing failure (TestMemoryPressureDetection)
- ✓ github.com/steveyegge/beads/internal/storage/sqlite: PASS
- ✓ github.com/steveyegge/beads/internal/types: PASS
- ⚠ github.com/steveyegge/beads/internal/storage/memory: no tests yet
All test failures are pre-existing and unrelated to --no-db implementation.
The new --no-db mode has been manually tested and verified working.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
via [Happy](https://happy.engineering)
Co-Authored-By: Claude <noreply@anthropic.com>
Co-Authored-By: Happy <yesreply@happy.engineering>
- Changed file permissions from 0644 → 0600 for JSONL exports and config files
- Changed directory permissions from 0755 → 0750 in all test code
- Updated .golangci.yml with proper exclusions for false positives
- Reduced gosec warnings from 102 to 22 (all remaining are acceptable)
Closes bd-57
Amp-Thread-ID: https://ampcode.com/threads/T-f754d957-9e42-4e74-861e-57235c7e6436
Co-authored-by: Amp <amp@ampcode.com>
- Prompts user to install hooks on first init if in git repo
- Auto-installs with Y/n prompt (defaults to yes)
- Skips prompt if hooks already installed
- Detects bd hooks by signature comment in files
Fixes silent data loss when .beads/ directory removed and daemon auto-starts.
Root cause: checkGitForIssues() hardcoded 'issues.jsonl' but git tracks 'beads.jsonl'
Changes:
- Fix A (bd-131): checkGitForIssues() tries beads.jsonl first, then issues.jsonl
- Fix B (bd-132): Immediate export after import in bd init to prevent daemon race
- Fix C (bd-133): Safety check that fails loudly if import fails
- Fix D (bd-134): Daemon startup auto-import when DB empty but git has issues
- Tests (bd-135): Comprehensive integration test suite
Oracle-recommended improvements:
- Export to exact git-relative path (prevents path drift)
- filepath.ToSlash for Windows git compatibility
- 64MB scanner buffer for large JSONL lines
- Improved safety check messages (only suggest local file if exists)
All tests passing. No regressions.
Amp-Thread-ID: https://ampcode.com/threads/T-0e31dc6a-a0d9-46c6-87b2-cfdebe829a52
Co-authored-by: Amp <amp@ampcode.com>
Fixes#118 - Users can now initialize databases outside project directory
Changes:
- Check BEADS_DB env var in init command (PersistentPreRun skipped for init)
- Use global dbPath from --db flag or BEADS_DB, else default to .beads/{prefix}.db
- Use canonical path comparison (filepath.Abs + Clean) instead of strings.Contains
- Only create .beads/ directory when database is actually local
- Ensure parent directory exists for custom database paths
- Add comprehensive tests for --db flag, BEADS_DB env var, and edge cases
- Fix test isolation by resetting global dbPath in test setup
Tests:
- Custom path with --db flag
- Custom path with BEADS_DB env var
- Custom path containing ".beads" substring (prevents false positive)
- Flag precedence over env var
- All existing tests still pass
Amp-Thread-ID: https://ampcode.com/threads/T-04e2c94f-894a-4b49-8132-980450b2300d
Co-authored-by: Amp <amp@ampcode.com>
Prevents agents from creating duplicate low-numbered issues when starting
with a fresh git clone that already has issues.jsonl in git history.
Changes:
- bd init now checks for existing issues in git after DB creation
- Auto-imports with collision resolution if found
- Updates AGENTS.md to simplify onboarding (just 'bd init')
Fixes the scenario where:
1. Fresh clone has .beads/issues.jsonl in git (212 issues)
2. Agent runs bd init (creates empty DB)
3. Agent starts creating bd-1, bd-2, etc (collisions with git)
Now bd init automatically imports all issues from git on first run.
Amp-Thread-ID: https://ampcode.com/threads/T-8a41f14d-d4c3-4c50-a18b-5f112110f138
Co-authored-by: Amp <amp@ampcode.com>
- Create .gitignore file in .beads/ when running bd init
- Ignores *.db and *.db-* patterns to prevent database commits
- Add test coverage to verify .gitignore creation
- Add .claude/settings.local.json to project .gitignore
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Co-authored-by: Ben Madore <madorb@users.noreply.github.com>
- bd-169: Add -q/--quiet flag to bd init command
- bd-28: Improve error handling in RemoveDependency
- Now checks RowsAffected and returns error if dependency doesn't exist
- New removeDependencyIfExists() helper for collision remapping
- bd-393: CRITICAL - Fix auto-import skipping collisions
- Auto-import was LOSING work from other workers
- Now automatically remaps collisions to new IDs
- Calls RemapCollisions() instead of skipping
All tests pass.
Amp-Thread-ID: https://ampcode.com/threads/T-cba86837-28db-47ce-94eb-67fade82376a
Co-authored-by: Amp <amp@ampcode.com>
Prevent user confusion when running outdated bd binaries by detecting
version mismatches between the binary and database.
Features:
- Store bd version in metadata table on init
- Check version on every command (PersistentPreRun)
- Warn if binary is outdated with rebuild instructions
- Auto-upgrade database if binary is newer
- Silent operation when versions match
Fixes confusion from bd-182 (auto-export not working with old binary)
Implements bd-197
Files changed:
- cmd/bd/init.go: Store version on init
- cmd/bd/main.go: checkVersionMismatch() + integration
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Ensures exactly one hyphen between prefix and issue number regardless of
whether user provides trailing hyphen.
Before:
bd init --prefix wy- → Issues: wy--1, wy--2 (double hyphen)
bd init --prefix wy → Issues: wy-1, wy-2 (single hyphen)
After:
bd init --prefix wy- → Issues: wy-1, wy-2 (single hyphen)
bd init --prefix wy → Issues: wy-1, wy-2 (single hyphen)
The hyphen is added automatically during ID generation in CreateIssue(),
so the stored prefix should never include trailing hyphens.
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Co-Authored-By: Claude <noreply@anthropic.com>
- Add package comment to cmd/bd/dep.go
- Change directory permissions from 0755 to 0750 in init.go
- Simplify getNextID signature (remove unused error return)
- Configure golangci-lint exclusions for false positives
- Document linting policy in LINTING.md
The remaining ~100 lint warnings are documented false positives:
- 73 errcheck: deferred cleanup (idiomatic Go)
- 17 revive: Cobra interface requirements and naming choices
- 7 gosec: false positives on validated SQL and user file paths
- 2 dupl: acceptable test code duplication
- 1 goconst: test constant repetition
See LINTING.md for full rationale. Contributors should focus on
avoiding NEW issues rather than the documented baseline.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Major improvements to code quality, documentation, and CI:
Code Quality:
- Add golangci-lint configuration with 13 linters
- Fix unchecked error returns in export/import/init
- Refactor duplicate scanIssues code
- Add package comments for all packages
- Add const block comments for exported constants
- Configure errcheck to allow idiomatic defer patterns
Documentation:
- Add comprehensive CONTRIBUTING.md with setup, testing, and workflow
- Fix QUICKSTART.md binary name references (beads → bd)
- Correct default database path documentation
CI/CD:
- Add GitHub Actions workflow for tests and linting
- Enable race detection and coverage reporting
- Automated quality checks on all PRs
All tests passing. Lint issues reduced from 117 to 103 (remaining are
idiomatic patterns and test code). Ready for open-source release.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
This is a fundamental architectural shift from binary SQLite to JSONL as
the source of truth for git workflows.
## New Features
- `bd export --format=jsonl` - Export issues to JSON Lines format
- `bd import` - Import issues from JSONL (create new, update existing)
- `--skip-existing` flag for import to only create new issues
## Architecture Change
**Before:** Binary SQLite database committed to git
**After:** JSONL text files as source of truth, SQLite as ephemeral cache
Benefits:
- Git-friendly text format with clean diffs
- AI-resolvable merge conflicts (append-only is 95% conflict-free)
- Human-readable issue tracking in git
- No binary merge conflicts
## Documentation
- Updated README with JSONL-first workflow and git hooks
- Added TEXT_FORMATS.md analyzing JSONL vs CSV vs binary
- Updated GIT_WORKFLOW.md with historical context
- .gitignore now excludes *.db, includes .beads/*.jsonl
## Implementation Details
- Export sorts issues by ID for consistent diffs
- Import handles both creates and updates atomically
- Proper handling of pointer fields (EstimatedMinutes)
- All tests passing
## Breaking Changes
- Database files (*.db) should now be gitignored
- Use export/import workflow for git collaboration
- Git hooks recommended for automation
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
