Add exitWithError helper to ensure JSON output is used when --json
flag is set during orphan detection errors.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Check comments table for orphaned issue_id references
- Check events table for orphaned issue_id references
- Delete orphaned comments/events in repair transaction
- Add --json flag for machine-readable output with:
- orphan_counts by type (dependencies, labels, comments, events)
- orphan_details with full reference info
- status (success, no_orphans, dry_run, error)
- backup_path when applicable
(bd-2wm2, bd-ie7j)
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Code review fixes for critical issues:
- Wrap all DELETEs in a transaction with rollback on error
- Create .pre-repair backup before any destructive operations
- Mark parent issues as dirty when deleting orphaned depends_on refs
- Fix misleading PreRun comment
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
When the database has orphaned dependencies or labels, the migration
invariant check fails and prevents the database from opening. This
creates a chicken-and-egg problem where bd doctor --fix cannot run.
The new bd repair command:
- Opens SQLite directly, bypassing invariant checks
- Deletes orphaned dependencies (issue_id or depends_on_id not in issues)
- Deletes orphaned labels (issue_id not in issues)
- Runs WAL checkpoint to persist changes
- Supports --dry-run to preview what would be cleaned
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
