Analysis found these commands are dead code:
- gt never calls `bd pin` - uses `bd update --status=pinned` instead
- Beads.Pin() wrapper exists but is never called
- bd hook functionality duplicated by gt mol status
- Code comment says "pinned field is cosmetic for bd hook visibility"
Removed:
- cmd/bd/pin.go
- cmd/bd/unpin.go
- cmd/bd/hook.go
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Adds automatic database recovery when bd doctor --fix detects corruption:
- Detects SQLite corruption (malformed database, SQLITE_CORRUPT errors)
- Backs up corrupted database before recovery attempt
- Rebuilds from JSONL if available (issues.jsonl, deletions.jsonl)
- Falls back to fresh database if JSONL unavailable
- Reports recovery results (issues imported, success/failure)
Recovery is triggered automatically by --fix when corruption is detected.
No manual intervention required.
feat(doctor): add count-based database size check
Adds CheckDatabaseSize (Check 29) that warns when closed issues exceed a configurable threshold (default: 5000). The check is informational only - no auto-fix since pruning is destructive.
Also improves fix guidance for sync-branch hook compatibility and legacy JSONL filename checks.
PR #724 by @rsnodgrass
- Add CheckOrphanedIssues to detect issues referenced in commits but still open
- Pattern matches (prefix-xxx) in git log against open issues in database
- Reports warning with issue IDs and commit hashes
- Add 8 comprehensive tests for the new check
Also:
- Add tests for mol spawn --attach functionality (bd-f7p1)
- Document commit message convention in AGENT_INSTRUCTIONS.md
- Fix CheckpointWAL to use wrapDBError for consistency
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* refactor(doctor): split doctor.go into modular package files
Split the 3,171-line doctor.go into logical sub-files within the
cmd/bd/doctor/ package, reducing the main file to 834 lines (74% reduction).
New package structure:
- types.go: DoctorCheck struct and status constants
- installation.go: CheckInstallation, CheckMultipleDatabases, CheckPermissions
- git.go: CheckGitHooks, CheckMergeDriver, CheckSyncBranch* checks
- database.go: CheckDatabaseVersion, CheckSchemaCompatibility, CheckDatabaseJSONLSync
- version.go: CheckCLIVersion, CheckMetadataVersionTracking, CompareVersions
- integrity.go: CheckIDFormat, CheckDependencyCycles, CheckTombstones
- daemon.go: CheckDaemonStatus, CheckVersionMismatch
- quick.go: Quick checks for sync-branch and hooks
Updated tests to use exported doctor.CheckXxx() functions and
doctor.StatusXxx constants.
* fix(doctor): suppress gosec G204 false positives
Add #nosec G204 comments to exec.Command calls in CheckSyncBranchHealth
where variables come from trusted sources (config files or hardcoded
values like "main"/"master"/"origin"), not untrusted user input.
