docs: fix README and PLUGIN.md documentation issues
- Clarify that bd ready shows issues ready to work on (#512)
- Update git hooks install command from deprecated script to bd hooks install (#513)
- Fix Claude Code plugin local install: use ./beads not ., clarify shell vs CC commands (#514)
Fixes#512, #513, #514
Move cleanup, compact, and reset commands under `bd admin` namespace.
Creates hidden aliases for backwards compatibility that show deprecation
notice when used.
- Create cmd/bd/admin.go with parent command
- Create cmd/bd/admin_aliases.go for hidden backwards-compat aliases
- Update cleanup.go, compact.go, reset.go to remove rootCmd.AddCommand
- Update all documentation to use `bd admin <cmd>` syntax
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Fixes GH#409 - Documentation inconsistently referred to beads.jsonl
as the canonical filename when issues.jsonl has been the default
since v0.25.1 (bd-6xd).
Updated files:
- docs/ARCHITECTURE.md
- docs/CLI_REFERENCE.md
- docs/PROTECTED_BRANCHES.md
- docs/ADVANCED.md
- docs/GIT_INTEGRATION.md
- docs/MULTI_REPO_AGENTS.md
- docs/MULTI_REPO_MIGRATION.md
- docs/TROUBLESHOOTING.md
- examples/*/README.md
- skills/beads/references/CLI_REFERENCE.md
Note: beads.jsonl is still supported for backward compatibility.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Fixes 46 broken relative links across 20 documentation files in docs/.
Changes:
- Added ../ prefix for root files (README.md, AGENTS.md)
- Removed ../ prefix for sibling docs files
- Removed dead links to non-existent files
- Fixed subdirectory paths
Based on PR #574 by chrisvaillancourt.
Co-Authored-By: Chris Vaillancourt <chrisvaillancourt@users.noreply.github.com>
Add comprehensive documentation about beads-created worktrees:
- New section in WORKTREES.md explaining why and where beads creates worktrees
- Common confusion: 'beads took over main!' with solution
- Troubleshooting entries for 'branch already checked out' errors
- FAQ entry: 'Why did beads create worktrees in my .git directory?'
This addresses user confusion when beads' sync-branch feature creates
internal worktrees that can lock branches users want to checkout.
Closes#510🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Document known Kaspersky false positive issue with Go binaries and
provide user workarounds.
Changes:
- Add comprehensive docs/ANTIVIRUS.md with:
- Explanation of why Go binaries trigger AV false positives
- Step-by-step exclusion instructions for Kaspersky, Windows Defender
- File integrity verification procedures
- False positive reporting guide
- FAQ section
- Update docs/TROUBLESHOOTING.md with quick reference section
- Close bd-t4u1: Kaspersky PDM:Trojan.Win32.Generic detection
Root cause: Kaspersky's heuristic detection flags Go binary patterns as
suspicious. This is an industry-wide issue affecting many Go projects.
Build already uses recommended optimizations (-s -w flags). Future
improvements (code signing, vendor whitelist) tracked separately.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
