Root cause: bd doctor hydrate was re-adding migrated tombstones to the
deletions manifest because getCurrentJSONLIDs() included all issues,
including tombstones. When compared against git history, tombstones
appeared as 'deleted' and were incorrectly added to the manifest as new
deletions, corrupting the database on next sync.
Fix: Skip tombstone-status issues in getCurrentJSONLIDs() so they don't
participate in deletion detection. Tombstones represent already-recorded
deletions/migrations and shouldn't be treated as active issues.
Changes:
- cmd/bd/doctor/fix/deletions.go: Skip tombstones in getCurrentJSONLIDs()
- cmd/bd/doctor/fix/deletions_test.go: New tests for tombstone skipping
- cmd/bd/migrate_tombstones_test.go: Test that tombstones are valid
This fixes the bug where 'bd migrate-tombstones' followed by 'bd sync'
would add thousands of deletion records with author 'bd-doctor-hydrate'
- Fix DEPENDENCIES.md: correct parent-child syntax (child depends on parent)
- Update bd show: display Children instead of Blocks for parent-child deps
- Group dependents by type with distinct labels
Generated with Claude Code
Co-Authored-By: Claude <noreply@anthropic.com>
Extract performExport() and performAutoImport() shared implementations:
- createExportFunc() and createLocalExportFunc() now use performExport()
with skipGit parameter
- createAutoImportFunc() and createLocalAutoImportFunc() now use performAutoImport()
with skipGit parameter
- createLocalSyncFunc() kept as-is (different flow from createSyncFunc)
Reduces daemon_sync.go by 89 lines (1003 -> 914) while maintaining
identical behavior and test coverage.
All existing tests pass. New shared functions use conditional logic
to skip git operations when skipGit=true, eliminating the need for
separate implementations.
When a clone gets reset (git reset --hard origin/main), the
git-history-backfill logic was incorrectly marking ALL issues as
deleted since they appeared in git history but not in the current
JSONL. This caused the entire database to be purged.
Fix:
- Add 50% threshold check: abort if git-history-backfill would delete
more than 50% of issues (likely a reset scenario, not deletions)
- Add warning when >10 issues would be deleted via backfill
- Print helpful message about manual deletion if needed
Test:
- Added TestMassDeletionSafetyGuard that simulates JSONL reset and
verifies the safety guard prevents mass deletion
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Previously, bd init blocked when JSONL existed with issues but no database,
telling users to run 'bd doctor --fix'. But doctor --fix just ran bd migrate
which requires an existing database - creating a circular dependency.
Now:
- bd init allows fresh clones (JSONL exists, no database) to proceed
- bd init creates the database and imports from JSONL automatically
- bd doctor --fix runs bd init (not migrate) when there's no database
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
The deletions.jsonl contained records for 79 'deleted' issues that were
actually just missing due to database corruption, not legitimately deleted.
Clearing this allows the issues to be restored.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
A bd sync during the swarm incorrectly purged all 80 issues from
issues.jsonl at commit 93718056. This restores the database state
from bb39c8b6 (the last good state before corruption).
Corruption occurred at 2025-11-29 13:35:28 during parallel polecat
syncs. Root cause investigation needed.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
- Change default JSONL filename from beads.jsonl to issues.jsonl
- Add bd doctor check and fix to auto-migrate legacy beads.jsonl configs
- Update FindJSONLPath to prefer issues.jsonl over beads.jsonl
- Add CheckLegacyJSONLConfig and CheckLegacyJSONLFilename checks
- Add LegacyJSONLConfig fix to rename files and update config
- Update .gitattributes to reference issues.jsonl
- Fix tests to expect new canonical filename
- Add bd-6xd to v0.25.1 release notes
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
The 410KB deletions.jsonl file with 3419 records was causing the CI test
suite to timeout after 10 minutes. This file is not needed for the PR and
is being added automatically by bd.
This should resolve the CI test failures that have been occurring.
Fixes bd-44e: Remove deletions.jsonl from .gitignore.
The deletions manifest MUST be tracked in git for cross-clone deletion
propagation to work (bd-imj). Previously it was incorrectly gitignored
with a "local-only" comment that contradicted the design.
Changes:
- Remove .beads/deletions.jsonl from .gitignore
- Add comment explaining why it is tracked
- Track existing deletions.jsonl file
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
