Auto-import was allowing git history backfill to run, which could
incorrectly purge issues. The fix adds NoGitHistory=true to all
auto-import code paths:
- autoimport.go (importFromGit)
- autoflush.go (autoImportIfNewer)
- daemon_sync.go (importToJSONLWithStore)
Git history backfill is designed to detect deletions that happened
after a local DB was created. During auto-import, there is no local
work to protect - we are importing from the authoritative JSONL source.
Also adds comprehensive tests for NoGitHistory behavior.
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Co-Authored-By: Claude <noreply@anthropic.com>
When opening a database that exists but is missing issue_prefix config
(typical in fresh clone scenarios), show a helpful error message instead
of cryptic migration invariant errors.
The new message:
- Explains the database needs initialization
- Detects if a JSONL file exists and shows the issue count
- Suggests the exact command to run: bd import -i <path>
- Falls back to suggesting bd init --prefix if no JSONL exists
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
When --auto-merge is used, performMerge now automatically:
1. Closes source issues with "Duplicate of <target>" reason
2. Links each source to target with a "related" dependency
Closes bd-hdt
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
- Fix doctor to treat empty deletions.jsonl as valid (0 entries OK status)
- Fix HydrateDeletionsManifest to create empty file when no deletions found
- Add --parent flag documentation to onboard command
- Add CLI --help tip throughout onboard documentation
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Fixes bd-0b2: The git history backfill mechanism was causing data loss
during JSONL filename migrations (beads.jsonl → issues.jsonl). When issues
existed in the old filename's git history, the backfill incorrectly treated
them as "deleted" and purged them from the database.
Changes:
- Add NoGitHistory field to importer.Options and ImportOptions structs
- Modify purgeDeletedIssues() to skip git history check when flag is set
- Add --no-git-history flag to bd import command
- Add --no-git-history flag to bd sync command
- Update purge_test.go to pass Options argument
Usage:
bd import -i .beads/issues.jsonl --no-git-history
bd sync --no-git-history
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
- Change default JSONL filename from beads.jsonl to issues.jsonl
- Add bd doctor check and fix to auto-migrate legacy beads.jsonl configs
- Update FindJSONLPath to prefer issues.jsonl over beads.jsonl
- Add CheckLegacyJSONLConfig and CheckLegacyJSONLFilename checks
- Add LegacyJSONLConfig fix to rename files and update config
- Update .gitattributes to reference issues.jsonl
- Fix tests to expect new canonical filename
- Add bd-6xd to v0.25.1 release notes
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
This repo explicitly configures beads.jsonl in metadata.json due to git
history reasons. The issues.jsonl file was stale (102 issues vs 622 in
beads.jsonl) and not being used.
bd doctor correctly detected this as a problem - having multiple JSONL
files can cause sync and merge conflicts.
🤖 Generated with Claude Code
Co-Authored-By: Claude <noreply@anthropic.com>
