Update examples/claude-code-skill/references/CLI_REFERENCE.md to match
docs/CLI_REFERENCE.md. The skill version was ~17% smaller and missing
newer sections like Global Flags, Sandbox Mode, Orphan Handling, etc.
Fixes#401🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Fixes bd-0b2: The git history backfill mechanism was causing data loss
during JSONL filename migrations (beads.jsonl → issues.jsonl). When issues
existed in the old filename's git history, the backfill incorrectly treated
them as "deleted" and purged them from the database.
Changes:
- Add NoGitHistory field to importer.Options and ImportOptions structs
- Modify purgeDeletedIssues() to skip git history check when flag is set
- Add --no-git-history flag to bd import command
- Add --no-git-history flag to bd sync command
- Update purge_test.go to pass Options argument
Usage:
bd import -i .beads/issues.jsonl --no-git-history
bd sync --no-git-history
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
- Change default JSONL filename from beads.jsonl to issues.jsonl
- Add bd doctor check and fix to auto-migrate legacy beads.jsonl configs
- Update FindJSONLPath to prefer issues.jsonl over beads.jsonl
- Add CheckLegacyJSONLConfig and CheckLegacyJSONLFilename checks
- Add LegacyJSONLConfig fix to rename files and update config
- Update .gitattributes to reference issues.jsonl
- Fix tests to expect new canonical filename
- Add bd-6xd to v0.25.1 release notes
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
After write operations in git worktrees, subsequent reads failed with
"Database out of sync with JSONL" even though the hash check passed.
Root cause: flushToJSONLWithState() updated last_import_hash but not
last_import_time after export. CheckStaleness() compares last_import_time
against JSONL mtime, so after export the JSONL appeared "newer" than the
last import.
Additional issue: RFC3339 only has second precision but file mtimes have
nanosecond precision, causing false positives when times were within the
same second.
Fix:
- Update last_import_time after export in flushToJSONLWithState()
- Use RFC3339Nano format for nanosecond precision
- Update CheckStaleness() to parse both formats for backward compatibility
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
- Add mypy override in pyproject.toml to relax strict typing for test files
- Update test fixtures to use _connection_pool instead of deprecated _client
- Fix datetime type mismatches in test fixtures (use datetime objects, not strings)
- Add type annotations to inner functions in test_multi_project_switching.py
- Fix union type handling in test assertions with isinstance checks
Reduces mypy errors from 216 to 0. All 168 tests still pass.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
- TestVersionChangesCoverage: Add missing 3rd changelog entry for v0.25.1
- TestDefaultPath: Use filepath.Join for cross-platform path handling
- TestDebouncer_CancelWithNoPendingAction: Increase sleep from 60ms to 100ms
to account for Windows timer imprecision
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Previously, bd sync would commit ALL staged files when committing beads
changes. This could lead to unintended commits of work-in-progress code
that users had staged but weren't ready to commit.
Changed gitCommitBeadsDir to use pathspec (-- .beads/) to explicitly
limit the commit to only .beads/ files.
Also added in previous commit (bd-pbj):
- New Untracked Files check in bd doctor for untracked .beads/*.jsonl
- bd doctor --fix can now stage and commit untracked JSONL files
Generated with Claude Code
Co-Authored-By: Claude <noreply@anthropic.com>
The pre-commit and pre-push hooks were only staging beads.jsonl and
issues.jsonl, but not deletions.jsonl. This caused deletions.jsonl
to remain untracked after bd cleanup or bd delete operations.
Updated all hook locations:
- cmd/bd/templates/hooks/pre-commit
- cmd/bd/templates/hooks/pre-push
- examples/git-hooks/pre-commit
- examples/git-hooks/pre-push
- .beads-hooks/pre-commit
- .beads-hooks/pre-push
Users with existing hooks should run: bd hooks install
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Steve Yegge
Matt Wilkie
matt wilkie