When sync-branch is configured, JSONL files are intentionally untracked
in working branches and only committed to the dedicated sync branch.
The CheckIssuesTracking and CheckUntrackedBeadsFiles checks now detect
sync-branch mode via GetFromYAML() and return OK status instead of
false warnings.
Extended bd-tvus fix to all doctor check functions that access .beads/
directory. In Gas Town multi-clone setups, crew/polecat clones use
.beads/redirect files to point to the shared mayor/rig beads directory.
Doctor checks now use resolveBeadsDir() to follow these redirects:
- daemon.go: CheckDaemonStatus
- git.go: CheckSyncBranchConfig, FindOrphanedIssues, CheckOrphanedIssues
- installation.go: CheckMultipleDatabases, CheckPermissions
- integrity.go: CheckIDFormat, CheckDependencyCycles, CheckTombstones,
CheckDeletionsManifest, CheckRepoFingerprint
- jsonl_integrity.go: CheckJSONLIntegrity
- legacy.go: CheckFreshClone
- maintenance.go: CheckStaleClosedIssues, CheckExpiredTombstones,
CheckCompactionCandidates
- perf.go: RunPerformanceDiagnostics, CollectPlatformInfo
- validation.go: CheckMergeArtifacts, CheckOrphanedDependencies,
CheckDuplicateIssues, CheckTestPollution, CheckChildParentDependencies,
CheckGitConflicts
- version.go: CheckMetadataVersionTracking
Intentionally NOT changed (check local files):
- CheckInstallation: checks local .beads/ exists
- CheckUntrackedBeadsFiles: checks git tracking of local files
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Analysis found these commands are dead code:
- gt never calls `bd pin` - uses `bd update --status=pinned` instead
- Beads.Pin() wrapper exists but is never called
- bd hook functionality duplicated by gt mol status
- Code comment says "pinned field is cosmetic for bd hook visibility"
Removed:
- cmd/bd/pin.go
- cmd/bd/unpin.go
- cmd/bd/hook.go
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* refactor(doctor): split doctor.go into modular package files
Split the 3,171-line doctor.go into logical sub-files within the
cmd/bd/doctor/ package, reducing the main file to 834 lines (74% reduction).
New package structure:
- types.go: DoctorCheck struct and status constants
- installation.go: CheckInstallation, CheckMultipleDatabases, CheckPermissions
- git.go: CheckGitHooks, CheckMergeDriver, CheckSyncBranch* checks
- database.go: CheckDatabaseVersion, CheckSchemaCompatibility, CheckDatabaseJSONLSync
- version.go: CheckCLIVersion, CheckMetadataVersionTracking, CompareVersions
- integrity.go: CheckIDFormat, CheckDependencyCycles, CheckTombstones
- daemon.go: CheckDaemonStatus, CheckVersionMismatch
- quick.go: Quick checks for sync-branch and hooks
Updated tests to use exported doctor.CheckXxx() functions and
doctor.StatusXxx constants.
* fix(doctor): suppress gosec G204 false positives
Add #nosec G204 comments to exec.Command calls in CheckSyncBranchHealth
where variables come from trusted sources (config files or hardcoded
values like "main"/"master"/"origin"), not untrusted user input.
