- Add nolint:unparam for readOnly param in sqlite_open.go
- Handle cmd.Help() error in wisp.go
- Handle rows.Close() error in migration 028
- Handle targetStore.Close() error in create.go
- Update Nix vendorHash for current dependencies
Cherry-picked from PR #769
Analysis found these commands are dead code:
- gt never calls `bd pin` - uses `bd update --status=pinned` instead
- Beads.Pin() wrapper exists but is never called
- bd hook functionality duplicated by gt mol status
- Code comment says "pinned field is cosmetic for bd hook visibility"
Removed:
- cmd/bd/pin.go
- cmd/bd/unpin.go
- cmd/bd/hook.go
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
The verb 'wisp' fits the chemistry metaphor (pour, bond, burn, squash)
while 'ephemeral' is an adjective. The internal API field remains
'Ephemeral' but the CLI command is now 'bd mol wisp'.
Commands:
bd mol wisp <proto> - create ephemeral wisp
bd mol wisp list - list wisps
bd mol wisp gc - garbage collect old wisps
Major refactor of molecular chemistry to make protos ephemeral:
- Formulas are now cooked directly to in-memory TemplateSubgraph
- No more proto beads stored in the database
Changes:
- cook.go: Add cookFormulaToSubgraph() and resolveAndCookFormula()
for in-memory formula cooking
- template.go: Add VarDefs field to TemplateSubgraph for default
value handling, add extractRequiredVariables() and
applyVariableDefaults() helpers
- pour.go: Try formula loading first for any name (not just mol-)
- wisp.go: Same pattern as pour
- mol_bond.go: Use resolveOrCookToSubgraph() for in-memory subgraphs
- mol_catalog.go: List formulas from disk instead of DB proto beads
- mol_distill.go: Output .formula.json files instead of proto beads
Flow: Formula (.formula.json) -> pour/wisp (cook inline) -> Mol/Wisp
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Remove resolvePartialIDDirect function and context import that became
dead code after switching to resolveOrCookFormula in bd-rciw.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Changes:
- bd cook: outputs proto JSON to stdout by default, add --persist flag
for legacy behavior (write to database)
- bd pour: accepts formula names, cooks inline as ephemeral proto,
spawns mol, then cleans up temporary proto
- bd wisp create: accepts formula names, cooks inline as ephemeral proto,
creates wisp, then cleans up temporary proto
- bd mol bond: already supported ephemeral protos (gt-8tmz.25)
The ephemeral proto pattern avoids persisting templates in the database.
Protos are only needed temporarily during spawn operations - the spawned
mol/wisp is what gets persisted.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Added type-specific ID prefixes for better visual recognition:
- `bd pour` now generates IDs with "mol-" prefix
- `bd wisp create` now generates IDs with "wisp-" prefix
- Regular issues continue using the configured prefix
Implementation:
- Added IDPrefix field to types.Issue (internal, not exported to JSONL)
- Added Prefix field to CloneOptions for spawning operations
- Added IDPrefix to RPC CreateArgs for daemon communication
- Updated storage layer to use issue.IDPrefix when generating IDs
- Updated pour.go and wisp.go to pass appropriate prefixes
This enables instant visual recognition of entity types and prevents
accidental modification of templates.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Wisps are now just issues with Wisp=true flag in the main database,
not exported to JSONL. Removes all references to .beads-wisp/ directory.
- Update docs: CLAUDE.md, CLI_REFERENCE.md, MOLECULES.md, DELETIONS.md
- Update code comments: wisp.go
- Update changelog and info.go version notes
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Progress on eliminating separate .beads-wisp/ directory:
- Add --wisp flag to bd create (creates issue with Wisp=true)
- Update bd wisp create to use main db instead of separate wisp storage
- Update bd wisp list to query main db with Wisp filter
- Update bd wisp gc to work with main database
- Add Wisp field to RPC ListArgs for daemon mode support
- Fix terminology: use "old/abandoned" for time-based cleanup,
reserve "stale" for graph-pressure staleness (per Gas Town taxonomy)
Still TODO:
- Finish mol squash simplification (remove cross-store logic)
- Remove runWispSquash and squashWispToPermanent functions
- Update mol burn similarly
- Deprecate .beads-wisp/ functions in internal/beads/beads.go
- Test all changes
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Remove the spawn command from bd mol. Proto instantiation now uses:
- bd pour <proto> - Instantiate as persistent mol (liquid phase)
- bd wisp create <proto> - Instantiate as ephemeral wisp (vapor phase)
Rationale:
- 'spawn' doesn't fit the chemistry metaphor
- Two phase transitions (pour/wisp) are clearer than one command with flags
- Avoids confusion about defaults
Changes:
- Delete mol_spawn.go
- Update mol.go, mol_catalog.go, mol_distill.go to reference pour/wisp
- Update pour.go and wisp.go to remove 'Equivalent to spawn' comments
- Update info.go changelog entries
- Update CHANGELOG.md, ARCHITECTURE.md, DELETIONS.md
Closes bd-8y9t
Modernize sorting code to use Go 1.21+ slices package:
- Replace sort.Slice with slices.SortFunc across 16 files
- Use cmp.Compare for orderable types (strings, ints)
- Use time.Time.Compare for time comparisons
- Use cmp.Or for multi-field sorting
- Use slices.SortStableFunc where stability matters
Benefits: cleaner 3-way comparison, slightly better performance,
modern idiomatic Go.
Part of GH#692 refactoring epic.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Implements wisp management commands for ephemeral molecules:
- bd wisp list: List wisps with stale detection
- bd wisp gc: Garbage collect orphaned wisps
- bd mol burn: Delete wisp without creating digest
Wisps are ephemeral molecules stored in .beads-wisp/ for patrol cycles
and operational loops that shouldn't accumulate in permanent storage.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
