Fixes bd-44e: Remove deletions.jsonl from .gitignore.
The deletions manifest MUST be tracked in git for cross-clone deletion
propagation to work (bd-imj). Previously it was incorrectly gitignored
with a "local-only" comment that contradicted the design.
Changes:
- Remove .beads/deletions.jsonl from .gitignore
- Add comment explaining why it is tracked
- Track existing deletions.jsonl file
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Co-Authored-By: Claude <noreply@anthropic.com>