# Setup Command Reference

**For:** Setting up beads integration with AI coding tools
**Version:** 0.29.0+

## Overview

The `bd setup` command configures beads integration with AI coding tools. It supports four integrations:

| Tool | Command | Integration Type |
|------|---------|-----------------|
| [Factory.ai (Droid)](#factoryai-droid) | `bd setup factory` | AGENTS.md file (universal standard) |
| [Claude Code](#claude-code) | `bd setup claude` | SessionStart/PreCompact hooks |
| [Cursor IDE](#cursor-ide) | `bd setup cursor` | Rules file (.cursor/rules/beads.mdc) |
| [Aider](#aider) | `bd setup aider` | Config file (.aider.conf.yml) |

## Quick Start

```bash
# Install integration for your tool
bd setup factory   # For Factory.ai Droid (and other AGENTS.md-compatible tools)
bd setup claude    # For Claude Code
bd setup cursor    # For Cursor IDE
bd setup aider     # For Aider

# Verify installation
bd setup factory --check
bd setup claude --check
bd setup cursor --check
bd setup aider --check
```

## Factory.ai (Droid)

Factory.ai Droid integration uses the AGENTS.md standard, which is compatible with multiple AI coding assistants.

### Installation

```bash
# Create or update AGENTS.md with beads integration
bd setup factory
```

### What Gets Installed

Creates or updates `AGENTS.md` in your project root with:
- Issue tracking workflow instructions
- Quick command reference
- Issue types and priorities
- Auto-sync explanation
- Important rules for AI agents

The beads section is wrapped in HTML comments (`<!-- BEGIN/END BEADS INTEGRATION -->`) for safe updates.

### AGENTS.md Standard

AGENTS.md is an industry-standard format for AI coding agent instructions, supported by:
- **Factory.ai Droid** - Specialized coding agents
- **Cursor** - Also reads AGENTS.md (in addition to .cursor/rules)
- **Aider** - Can be configured to read AGENTS.md
- **Gemini CLI** - Google's command-line AI assistant
- **Jules** - Google's coding assistant
- **Codex** - OpenAI's code generation model
- **Zed** - AI-enhanced editor
- And many more emerging tools

Using AGENTS.md means one configuration file works across your entire AI tool ecosystem.

### Flags

| Flag | Description |
|------|-------------|
| `--check` | Check if beads section exists in AGENTS.md |
| `--remove` | Remove beads section from AGENTS.md |

### Examples

```bash
# Check if beads section is in AGENTS.md
bd setup factory --check
# Output: ✓ Factory.ai integration installed: AGENTS.md
#         Beads section found in AGENTS.md

# Remove beads section
bd setup factory --remove
```

### How It Works

Factory Droid and other AGENTS.md-compatible tools automatically read `AGENTS.md` from:
1. Current working directory (`./AGENTS.md`)
2. Parent directories up to repo root
3. Personal override (`~/.factory/AGENTS.md`)

The beads section teaches AI agents:
- To use `bd ready` for finding work
- To use `bd create` for tracking new issues
- To use `bd sync` at session end
- The complete workflow pattern and best practices

### Updating Existing AGENTS.md

If you already have an AGENTS.md file with other project instructions:
- `bd setup factory` will **append** the beads section
- Re-running it will **update** the existing beads section (idempotent)
- The markers (`<!-- BEGIN/END BEADS INTEGRATION -->`) ensure safe updates

### When to Use This vs Other Integrations

**Use Factory integration when:**
- ✅ You use Factory.ai Droid
- ✅ You want one config file for multiple AI tools
- ✅ You prefer the AGENTS.md standard
- ✅ Your team uses multiple AI coding assistants

**Use other integrations when:**
- ✅ You only use Claude Code → `bd setup claude` (hooks are more dynamic)
- ✅ You need tool-specific features (like Claude's stealth mode)

You can use multiple integrations simultaneously - they complement each other!

## Claude Code

Claude Code integration uses hooks to automatically inject beads workflow context at session start and before context compaction.

### Installation

```bash
# Global installation (recommended)
bd setup claude

# Project-only installation
bd setup claude --project

# With stealth mode (flush only, no git operations)
bd setup claude --stealth
```

### What Gets Installed

**Global installation** (`~/.claude/settings.json`):
- `SessionStart` hook: Runs `bd prime` when a new session starts
- `PreCompact` hook: Runs `bd prime` before context compaction

**Project installation** (`.claude/settings.local.json`):
- Same hooks, but only active for this project

### Flags

| Flag | Description |
|------|-------------|
| `--check` | Check if integration is installed |
| `--remove` | Remove beads hooks |
| `--project` | Install for this project only (not globally) |
| `--stealth` | Use `bd prime --stealth` (flush only, no git operations) |

### Examples

```bash
# Check if hooks are installed
bd setup claude --check
# Output: ✓ Global hooks installed: /Users/you/.claude/settings.json

# Remove hooks
bd setup claude --remove

# Install project-specific hooks with stealth mode
bd setup claude --project --stealth
```

### How It Works

The hooks call `bd prime` which:
1. Outputs workflow context for Claude to read
2. Syncs any pending changes
3. Ensures Claude always knows how to use beads

This is more context-efficient than MCP tools (~1-2k tokens vs 10-50k for MCP schemas).

## Cursor IDE

Cursor integration creates a rules file that provides beads workflow context to the AI.

### Installation

```bash
bd setup cursor
```

### What Gets Installed

Creates `.cursor/rules/beads.mdc` with:
- Core workflow rules (track work in bd, not markdown TODOs)
- Quick command reference
- Workflow pattern (ready → claim → work → close → sync)
- Context loading instructions

### Flags

| Flag | Description |
|------|-------------|
| `--check` | Check if integration is installed |
| `--remove` | Remove beads rules file |

### Examples

```bash
# Check if rules are installed
bd setup cursor --check
# Output: ✓ Cursor integration installed: .cursor/rules/beads.mdc

# Remove rules
bd setup cursor --remove
```

### How It Works

Cursor reads `.cursor/rules/*.mdc` files and includes them in the AI's context. The beads rules file teaches the AI:
- To use `bd ready` for finding work
- To use `bd create` for tracking new issues
- To use `bd sync` at session end
- The basic workflow pattern

## Aider

Aider integration creates configuration files that teach the AI about beads, while respecting Aider's human-in-the-loop design.

### Installation

```bash
bd setup aider
```

### What Gets Installed

| File | Purpose |
|------|---------|
| `.aider.conf.yml` | Points Aider to read the instructions file |
| `.aider/BEADS.md` | Workflow instructions for the AI |
| `.aider/README.md` | Quick reference for humans |

### Flags

| Flag | Description |
|------|-------------|
| `--check` | Check if integration is installed |
| `--remove` | Remove beads configuration |

### Examples

```bash
# Check if config is installed
bd setup aider --check
# Output: ✓ Aider integration installed: .aider.conf.yml

# Remove configuration
bd setup aider --remove
```

### How It Works

Unlike Claude Code, Aider requires explicit command execution. The AI will **suggest** bd commands, which the user runs via `/run`:

```
You: What issues are ready to work on?

Aider: Let me check. Run:
/run bd ready

You: [runs the command]

Aider: Great! To claim bd-42, run:
/run bd update bd-42 --status in_progress
```

This respects Aider's philosophy of keeping humans in control while still leveraging beads for issue tracking.

## Comparison

| Feature | Factory.ai | Claude Code | Cursor | Aider |
|---------|-----------|-------------|--------|-------|
| Command execution | Automatic | Automatic | Automatic | Manual (/run) |
| Context injection | AGENTS.md | Hooks | Rules file | Config file |
| Global install | No (per-project) | Yes | No (per-project) | No (per-project) |
| Stealth mode | N/A | Yes | N/A | N/A |
| Standard format | Yes (AGENTS.md) | No (proprietary) | No (proprietary) | No (proprietary) |
| Multi-tool compatible | Yes | No | No | No |

## Best Practices

1. **Start with Factory integration** - Creates AGENTS.md which works across multiple AI tools:
   ```bash
   bd setup factory
   ```

2. **Add tool-specific integrations as needed** - Claude hooks, Cursor rules, or Aider config for tool-specific features

3. **Install globally for Claude Code** - You'll get beads context in every project automatically

4. **Use stealth mode in CI/CD** - `bd setup claude --stealth` avoids git operations that might fail in automated environments

5. **Commit AGENTS.md to git** - This ensures all team members and AI tools get the same instructions

6. **Run `bd doctor` after setup** - Verifies the integration is working:
   ```bash
   bd doctor | grep -i claude
   # Claude Integration: Hooks installed (CLI mode)
   ```

## Troubleshooting

### "Hooks not working"

1. Restart your AI tool after installation
2. Verify with `bd setup <tool> --check`
3. Check `bd doctor` output for integration status

### "Context not appearing"

For Claude Code, ensure `bd prime` works standalone:
```bash
bd prime
```

If this fails, fix the underlying beads issue first.

### "Want to switch from global to project hooks"

```bash
# Remove global hooks
bd setup claude --remove

# Install project hooks
bd setup claude --project
```

## Related Documentation

- [CLAUDE_INTEGRATION.md](CLAUDE_INTEGRATION.md) - Design decisions for Claude Code integration
- [AIDER_INTEGRATION.md](AIDER_INTEGRATION.md) - Detailed Aider workflow guide
- [QUICKSTART.md](QUICKSTART.md) - Getting started with beads
- [CLI_REFERENCE.md](CLI_REFERENCE.md) - Full command reference