Steve Yegge ebd5c1b72a fix: rename BondRef.ProtoID to SourceID for clarity (bd-ia3g) ...

The ProtoID field in BondRef was misleading as it could hold both proto
IDs (from proto+proto bonds) and molecule IDs (from mol+mol bonds).
Rename to SourceID with updated JSON tag to better reflect its purpose.

Changes:
- Rename BondRef.ProtoID to SourceID in types.go
- Update JSON tag from proto_id to source_id
- Update all usages in mol_bond.go and tests

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

2025-12-30 00:40:16 -08:00

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id_generator_test.go

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id_generator.go

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lock_check_test.go

Fix gosec warnings: tighten file permissions and add exclusions (bd-b47c034e)

2025-11-02 15:39:00 -08:00

lock_check.go

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lock_test.go

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lock.go

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process_test.go

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process.go

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types_test.go

fix: rename BondRef.ProtoID to SourceID for clarity (bd-ia3g)

2025-12-30 00:40:16 -08:00

types.go

fix: rename BondRef.ProtoID to SourceID for clarity (bd-ia3g)

2025-12-30 00:40:16 -08:00