- MCP server now uses daemon client by default with CLI fallback - Added BEADS_USE_DAEMON environment variable (default: enabled) - Created multi-repo integration test (all tests pass) - Updated .gitignore for daemon runtime files - Added SETUP_DAEMON.md with migration instructions - Closed bd-105 (investigation complete) and bd-114 (multi-server confusion) This enables single MCP server to handle multiple repos via daemon with per-request context routing. No more multiple MCP server configs! Amp-Thread-ID: https://ampcode.com/threads/T-c222692e-f6ef-4649-9726-db59470b82ef Co-authored-by: Amp <amp@ampcode.com>