Steve Yegge 310d374264 fix: prevent .beads/redirect from being committed (GH#814) ...

- Add redirect to GitignoreTemplate with explanatory comment
- Add redirect to requiredPatterns for outdated gitignore detection
- Add CheckRedirectNotTracked() to detect already-tracked redirect files
- Add FixRedirectTracking() to untrack via git rm --cached
- Register check in bd doctor under Git Integration category
- Add 6 tests for the new functionality

The redirect file contains a relative path that only works in the
original worktree. When committed, it causes warnings in other clones:
"Warning: redirect target does not exist"

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

2025-12-30 18:29:03 -08:00

..

doctor

fix: prevent .beads/redirect from being committed (GH#814)

2025-12-30 18:29:03 -08:00

setup

fix: resolve lint errors blocking CI

2025-12-29 15:58:24 -08:00

templates/hooks

feat: add prepare-commit-msg hook for agent identity trailers (bd-luso)

2025-12-29 21:26:32 -08:00

testdata

…

.gitattributes

…

@AGENTS.md

…

activity_test.go

test: add git helper and guard annotations

2025-12-28 20:48:37 -08:00

activity.go

refactor: remove Gas Town references from codebase

2025-12-30 14:13:32 -08:00

admin_aliases.go

docs: Document deprecation timeline and add removal warnings (bd-pndo)

2025-12-28 16:40:43 -08:00

admin.go

feat: add bd admin parent command for cleanup/compact/reset (bd-3u8m)

2025-12-27 16:21:08 -08:00

agent_test.go

feat: add bd agent state command for ZFC-compliant state reporting (bd-uxlb)

2025-12-28 01:56:53 -08:00

agent.go

feat: add structured labels for agent beads (bd-g7eq)

2025-12-29 21:15:46 -08:00

AGENTS.md

…

audit.go

…

autoflush.go

refactor: Break up 280-line flushToJSONLWithState into focused helpers (bd-9hc9)

2025-12-28 16:23:45 -08:00

autoimport_test.go

…

autoimport.go

Add debug logging for YAML parse errors in autoimport (bd-mql4)

2025-12-30 16:51:14 -08:00

autostart_test.go

…

cleanup.go

chore: remove issue ID references from comments and changelogs

2025-12-28 10:05:16 -08:00

cli_coverage_show_test.go

refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)

2025-12-27 16:02:15 -08:00

cli_fast_test.go

…

close.go

Add 'last touched' issue tracking for update/close without ID

2025-12-30 16:58:10 -08:00

comments_test.go

…

comments.go

docs: Document deprecation timeline and add removal warnings (bd-pndo)

2025-12-28 16:40:43 -08:00

compact_rpc.go

refactor: Split large cmd/bd files to meet 800-line limit (bd-xtf5)

2025-12-28 18:43:09 -08:00

compact_test.go

…

compact_tombstone.go

fix: bd admin compact --older-than=0 now expires all tombstones

2025-12-30 00:00:25 -08:00

compact.go

fix: bd admin compact --older-than=0 now expires all tombstones

2025-12-30 00:00:25 -08:00

config_test.go

…

config.go

fix: Show warning when config.yaml overrides database config (bd-20j)

2025-12-29 14:03:39 -08:00

context.go

Refactor: Introduce CommandContext to consolidate global variables (bd-qobn)

2025-12-30 16:29:28 -08:00

cook_test.go

feat: Compile-time vs runtime cooking (gt-8tmz.23)

2025-12-25 18:40:15 -08:00

cook.go

fix: --var flag now allows commas in values (#786)

2025-12-29 16:17:51 -08:00

count.go

…

create_form_test.go

…

create_form.go

refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)

2025-12-27 16:02:15 -08:00

create_test.go

…

create.go

Add 'last touched' issue tracking for update/close without ID

2025-12-30 16:58:10 -08:00

daemon_autoimport_test.go

refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)

2025-12-27 16:02:15 -08:00

daemon_autostart_unit_test.go

feat: auto-bypass daemon for wisp operations (bd-ta4r)

2025-12-28 02:11:13 -08:00

daemon_autostart.go

refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)

2025-12-27 16:02:15 -08:00

daemon_basics_test.go

…

daemon_config.go

…

daemon_crash_test.go

…

daemon_debouncer_test.go

refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)

2025-12-27 16:02:15 -08:00

daemon_debouncer.go

…

daemon_event_loop.go

chore: remove issue ID references from comments and changelogs

2025-12-28 10:05:16 -08:00

daemon_health_freebsd.go

…

daemon_health_solaris.go

fix: add illumos/solaris support for disk space check (#798)

2025-12-29 14:43:00 -08:00

daemon_health_unix.go

fix: add illumos/solaris support for disk space check (#798)

2025-12-29 14:43:00 -08:00

daemon_health_wasm.go

…

daemon_health_windows.go

…

daemon_integration_test.go

…

daemon_lifecycle.go

chore: remove issue ID references from comments and changelogs

2025-12-28 10:05:16 -08:00

daemon_local_test.go

…

daemon_lock_test.go

…

daemon_lock_unix.go

…

daemon_lock_wasm.go

…

daemon_lock_windows.go

…

daemon_lock.go

…

daemon_logger.go

chore: remove deprecated setupDaemonLoggerLegacy function (bd-2dwo)

2025-12-30 00:27:12 -08:00

daemon_parent_test.go

…

daemon_rotation_test.go

…

daemon_server.go

…

daemon_sync_branch_test.go

refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)

2025-12-27 16:02:15 -08:00

daemon_sync_branch.go

fix: bd sync fails to copy local changes TO beads-sync worktree (#810)

2025-12-30 16:49:50 -08:00

daemon_sync_state.go

refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)

2025-12-27 16:02:15 -08:00

daemon_sync_test.go

…

daemon_sync.go

chore: remove issue ID references from comments and changelogs

2025-12-28 10:05:16 -08:00

daemon_test.go

…

daemon_unix_test.go

…

daemon_unix.go

…

daemon_wasm.go

…

daemon_watcher_platform_test.go

…

daemon_watcher_test.go

…

daemon_watcher.go

chore: remove issue ID references from comments and changelogs

2025-12-28 10:05:16 -08:00

daemon_windows.go

…

daemon.go

refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)

2025-12-27 16:02:15 -08:00

daemons_test.go

…

daemons.go

docs: Document deprecation timeline and add removal warnings (bd-pndo)

2025-12-28 16:40:43 -08:00

defer.go

…

delete_rpc_test.go

refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)

2025-12-27 16:02:15 -08:00

delete_test.go

…

delete.go

fix: bd delete --cascade now recursively deletes dependents (#787)

2025-12-29 15:10:59 -08:00

deletion_tracking_test.go

…

deletion_tracking.go

…

dep_test.go

feat(deps): detect/prevent child→parent dependency anti-pattern (bd-nim5)

2025-12-24 13:03:27 -08:00

dep.go

feat: add refs field for cross-references with relationship types (bd-irah)

2025-12-30 15:52:33 -08:00

detect_pollution.go

docs: Document deprecation timeline and add removal warnings (bd-pndo)

2025-12-28 16:40:43 -08:00

direct_mode_test.go

…

direct_mode.go

Refactor: Introduce CommandContext to consolidate global variables (bd-qobn)

2025-12-30 16:29:28 -08:00

docs.md

…

doctor_fix.go

fix: prevent .beads/redirect from being committed (GH#814)

2025-12-30 18:29:03 -08:00

doctor_health.go

refactor: Split large cmd/bd files to meet 800-line limit (bd-xtf5)

2025-12-28 18:43:09 -08:00

doctor_pollution.go

fix: Add nolint comments for gosec/errcheck/unparam warnings

2025-12-29 14:39:43 -08:00

doctor_repair_chaos_test.go

test: add git helper and guard annotations

2025-12-28 20:48:37 -08:00

doctor_repair_test.go

test: add git helper and guard annotations

2025-12-28 20:48:37 -08:00

doctor_test.go

test: add git helper and guard annotations

2025-12-28 20:48:37 -08:00

doctor.go

fix: prevent .beads/redirect from being committed (GH#814)

2025-12-30 18:29:03 -08:00

duplicate.go

chore: remove issue ID references from comments and changelogs

2025-12-28 10:05:16 -08:00

duplicates_test.go

…

duplicates.go

…

edit.go

fix: Add nolint comments for gosec/errcheck/unparam warnings

2025-12-29 14:39:43 -08:00

epic_test.go

…

epic.go

fix: Use FatalErrorRespectJSON across all commands (bd-28sq)

2025-12-25 13:56:19 -08:00

errors.go

…

export_import_test.go

Add close_reason to JSONL format documentation and tests (bd-lxzx)

2025-12-30 17:05:48 -08:00

export_integrity_integration_test.go

…

export_mtime_test.go

…

export_staleness_test.go

…

export_test.go

…

export.go

chore: remove issue ID references from comments and changelogs

2025-12-28 10:05:16 -08:00

external_ref_test.go

…

flags.go

…

flush_manager_test.go

…

flush_manager.go

…

fork_protection_test.go

…

fork_protection.go

…

formula.go

refactor: remove Gas Town references from codebase

2025-12-30 14:13:32 -08:00

gate.go

chore: remove issue ID references from comments and changelogs

2025-12-28 10:05:16 -08:00

git_sync_test.go

refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)

2025-12-27 16:02:15 -08:00

git_test_helpers.go

test: add git helper and guard annotations

2025-12-28 20:48:37 -08:00

graph_test.go

…

graph.go

refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)

2025-12-27 16:02:15 -08:00

helpers_test.go

…

hooks_test.go

Add unit tests to improve cmd/bd CLI coverage (bd-llfl)

2025-12-30 17:14:55 -08:00

hooks.go

refactor: remove Gas Town references from codebase

2025-12-30 14:13:32 -08:00

human.go

Add bd human command for focused help menu

2025-12-29 14:33:19 -08:00

import_bug_test.go

…

import_cancellation_test.go

…

import_helpers_test.go

refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)

2025-12-27 16:02:15 -08:00

import_idempotent_test.go

…

import_mtime_test.go

…

import_multipart_id_test.go

…

import_profile_test.go

…

import_shared.go

…

import_uncommitted_test.go

…

import.go

chore: remove issue ID references from comments and changelogs

2025-12-28 10:05:16 -08:00

info_test.go

…

info.go

refactor: remove Gas Town references from codebase

2025-12-30 14:13:32 -08:00

init_agent.go

refactor: Split init.go from 1928 to 705 lines (bd-xtf5)

2025-12-28 18:43:09 -08:00

init_contributor.go

…

init_git_hooks.go

refactor: Split init.go from 1928 to 705 lines (bd-xtf5)

2025-12-28 18:43:09 -08:00

init_hooks_test.go

test: add git helper and guard annotations

2025-12-28 20:48:37 -08:00

init_stealth.go

refactor: Split init.go from 1928 to 705 lines (bd-xtf5)

2025-12-28 18:43:09 -08:00

init_team.go

…

init_templates.go

refactor: Split init.go from 1928 to 705 lines (bd-xtf5)

2025-12-28 18:43:09 -08:00

init_test.go

test: add coverage for GH#807 sync.branch main/master rejection

2025-12-30 18:19:53 -08:00

init.go

fix: prevent sync.branch from being set to main/master (#807)

2025-12-30 16:45:51 -08:00

integrity_content_test.go

…

integrity_test.go

…

integrity.go

chore: remove issue ID references from comments and changelogs

2025-12-28 10:05:16 -08:00

jira_test.go

Implement Jira issue timestamp comparison for sync (bd-0qx5)

2025-12-30 16:07:31 -08:00

jira.go

Implement Jira issue timestamp comparison for sync (bd-0qx5)

2025-12-30 16:07:31 -08:00

jsonl_integrity_test.go

…

label_test.go

…

label.go

chore: remove issue ID references from comments and changelogs

2025-12-28 10:05:16 -08:00

last_touched_test.go

Add 'last touched' issue tracking for update/close without ID

2025-12-30 16:58:10 -08:00

last_touched.go

Add 'last touched' issue tracking for update/close without ID

2025-12-30 16:58:10 -08:00

linear_conflict.go

refactor: Split large cmd/bd files to meet 800-line limit (bd-xtf5)

2025-12-28 18:43:09 -08:00

linear_sync.go

refactor: Split large cmd/bd files to meet 800-line limit (bd-xtf5)

2025-12-28 18:43:09 -08:00

linear_test.go

…

linear.go

refactor: Split large cmd/bd files to meet 800-line limit (bd-xtf5)

2025-12-28 18:43:09 -08:00

list_helpers_test.go

refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)

2025-12-27 16:02:15 -08:00

list_test.go

Add unit tests to improve cmd/bd CLI coverage (bd-llfl)

2025-12-30 17:14:55 -08:00

list.go

Add BD_AGENT_MODE for ultra-compact output

2025-12-30 16:04:39 -08:00

mail.go

refactor: remove Gas Town references from codebase

2025-12-30 14:13:32 -08:00

main_daemon.go

refactor: remove Gas Town references from codebase

2025-12-30 14:13:32 -08:00

main_errors.go

refactor: Split large cmd/bd files to meet 800-line limit (bd-xtf5)

2025-12-28 18:43:09 -08:00

main_help.go

refactor: Split large cmd/bd files to meet 800-line limit (bd-xtf5)

2025-12-28 18:43:09 -08:00

main_test.go

…

main.go

Fix BD_ACTOR handling in direct mode paths

2025-12-30 16:51:14 -08:00

markdown_test.go

…

markdown.go

…

merge_security_test.go

…

merge.go

…

migrate_hash_ids_test.go

…

migrate_hash_ids.go

feat: integrate migration detection into bd doctor (bd-7l27)

2025-12-30 00:06:42 -08:00

migrate_issues.go

feat: integrate migration detection into bd doctor (bd-7l27)

2025-12-30 00:06:42 -08:00

migrate_sync_test.go

…

migrate_sync.go

refactor: remove Gas Town references from codebase

2025-12-30 14:13:32 -08:00

migrate_test.go

…

migrate_tombstones.go

feat: integrate migration detection into bd doctor (bd-7l27)

2025-12-30 00:06:42 -08:00

migrate.go

feat: integrate migration detection into bd doctor (bd-7l27)

2025-12-30 00:06:42 -08:00

mol_bond.go

fix: rename BondRef.ProtoID to SourceID for clarity (bd-ia3g)

2025-12-30 00:40:16 -08:00

mol_burn.go

feat: bd mol burn now works on mols, not just wisps (bd-l6yk)

2025-12-29 17:10:26 -08:00

mol_current.go

refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)

2025-12-27 16:02:15 -08:00

mol_distill.go

fix: --var flag now allows commas in values (#786)

2025-12-29 16:17:51 -08:00

mol_show.go

…

mol_squash.go

refactor: remove Gas Town references from codebase

2025-12-30 14:13:32 -08:00

mol_stale.go

feat: add daemon RPC endpoints for config and mol stale (bd-ag35)

2025-12-30 06:59:51 -08:00

mol_test.go

refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)

2025-12-27 16:02:15 -08:00

mol.go

refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)

2025-12-27 16:02:15 -08:00

nodb_test.go

Refactor: Introduce CommandContext to consolidate global variables (bd-qobn)

2025-12-30 16:29:28 -08:00

nodb.go

chore: remove issue ID references from comments and changelogs

2025-12-28 10:05:16 -08:00

onboard_test.go

…

onboard.go

…

orphans_test.go

test: improve nodb and orphans coverage

2025-12-29 14:17:44 -08:00

orphans.go

test: improve nodb and orphans coverage

2025-12-29 14:17:44 -08:00

output_test.go

…

periodic_remote_sync_test.go

…

pour.go

fix: --var flag now allows commas in values (#786)

2025-12-29 16:17:51 -08:00

preflight.go

Add bd preflight command with static checklist (Phase 1)

2025-12-30 18:13:57 -08:00

prime_test.go

…

prime.go

feat: show redirect info in bd prime output (bd-kblo)

2025-12-27 21:33:01 -08:00

quick.go

…

quickstart.go

…

readonly_test.go

…

ready_test.go

…

ready.go

feat: Add mol_type schema field for molecule type classification (bd-oxgi)

2025-12-28 19:52:51 -08:00

reinit_test.go

refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)

2025-12-27 16:02:15 -08:00

relate_test.go

refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)

2025-12-27 16:02:15 -08:00

relate.go

docs: Document deprecation timeline and add removal warnings (bd-pndo)

2025-12-28 16:40:43 -08:00

rename_prefix_repair_test.go

…

rename_prefix_test.go

fix: remove arbitrary 8-char prefix limit from rename-prefix (GH#770)

2025-12-27 22:24:19 -08:00

rename_prefix.go

fix: remove arbitrary 8-char prefix limit from rename-prefix (GH#770)

2025-12-27 22:24:19 -08:00

reopen_test.go

…

reopen.go

…

repair_deps_test.go

…

repair_orphans_test.go

feat: Add bd repair command for orphaned foreign key refs (hq-2cchm)

2025-12-29 12:43:22 -08:00

repair.go

fix: bd repair - consistent JSON error handling for find operations

2025-12-29 13:16:47 -08:00

repo.go

…

reset_test.go

…

reset.go

feat: add bd admin parent command for cleanup/compact/reset (bd-3u8m)

2025-12-27 16:21:08 -08:00

restore_test.go

…

restore.go

…

routed.go

refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)

2025-12-27 16:02:15 -08:00

sandbox_test.go

…

sandbox_unix.go

…

sandbox_windows.go

…

scripttest_test.go

…

search_test.go

…

search.go

…

setup.go

…

ship.go

…

show_thread.go

refactor: Split large cmd/bd files to meet 800-line limit (bd-xtf5)

2025-12-28 18:43:09 -08:00

show_unit_helpers_test.go

refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)

2025-12-27 16:02:15 -08:00

show_unit_helpers.go

Centralize validation patterns with composable validators (bd-jbqx)

2025-12-30 16:00:22 -08:00

show.go

Add 'last touched' issue tracking for update/close without ID

2025-12-30 16:58:10 -08:00

simple_helpers_test.go

…

slot.go

chore: remove issue ID references from comments and changelogs

2025-12-28 10:05:16 -08:00

snapshot_manager.go

…

stale_test.go

fix(json): audit and standardize JSON output across commands (bd-au0.7)

2025-12-24 00:10:14 -08:00

stale.go

fix(json): audit and standardize JSON output across commands (bd-au0.7)

2025-12-24 00:10:14 -08:00

staleness.go

…

state_test.go

feat: add bd state and bd set-state helper commands (bd-7l67)

2025-12-30 15:57:08 -08:00

state.go

feat: add bd state and bd set-state helper commands (bd-7l67)

2025-12-30 15:57:08 -08:00

status_test.go

…

status.go

…

swarm.go

fix: Add nolint comments for gosec/errcheck/unparam warnings

2025-12-29 14:39:43 -08:00

sync_branch_priority_test.go

fix: bypass gitHasBeadsChanges when using sync-branch (#812)

2025-12-30 18:04:26 -08:00

sync_branch.go

Fix bd sync failing to copy local changes to beads-sync worktree (GH#810)

2025-12-30 18:11:08 -08:00

sync_check.go

chore: remove issue ID references from comments and changelogs

2025-12-28 10:05:16 -08:00

sync_export.go

chore: remove issue ID references from comments and changelogs

2025-12-28 10:05:16 -08:00

sync_git.go

fix: resolve lint errors blocking CI

2025-12-29 15:58:24 -08:00

sync_helpers_more_test.go

refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)

2025-12-27 16:02:15 -08:00

sync_import.go

chore: remove issue ID references from comments and changelogs

2025-12-28 10:05:16 -08:00

sync_local_only_test.go

…

sync_merge_test.go

…

sync_test.go

Fix bd sync failing to copy local changes to beads-sync worktree (GH#810)

2025-12-30 18:11:08 -08:00

sync.go

fix: show "No changes to commit" when sync-branch worktree has no changes

2025-12-30 18:20:33 -08:00

template_test.go

fix: mol run loads all hierarchical children + supports title lookup (bd-c8d5, bd-drcx)

2025-12-24 23:33:34 -08:00

template.go

fix: --var flag now allows commas in values (#786)

2025-12-29 16:17:51 -08:00

test_guard_helpers.go

test: add git helper and guard annotations

2025-12-28 20:48:37 -08:00

test_helpers_test.go

Refactor: Introduce CommandContext to consolidate global variables (bd-qobn)

2025-12-30 16:29:28 -08:00

test_repo_beads_guard_test.go

Refactor: Introduce CommandContext to consolidate global variables (bd-qobn)

2025-12-30 16:29:28 -08:00

test_wait_helper.go

refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)

2025-12-27 16:02:15 -08:00

thanks.go

refactor: relocate thanks command to bd info --thanks (bd-wb9g)

2025-12-27 16:08:34 -08:00

thread_test.go

refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)

2025-12-27 16:02:15 -08:00

tips_example_test.go

…

tips_test.go

…

tips.go

refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)

2025-12-27 16:02:15 -08:00

undefer.go

…

update.go

feat: Add --claim flag to bd update for work queue semantics (gt-il2p7)

2025-12-30 18:09:34 -08:00

upgrade.go

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utils_unit_test.go

Add unit tests to improve cmd/bd CLI coverage (bd-llfl)

2025-12-30 17:14:55 -08:00

version_test.go

Refactor: Introduce CommandContext to consolidate global variables (bd-qobn)

2025-12-30 16:29:28 -08:00

version_tracking_test.go

Add unit tests to improve cmd/bd CLI coverage (bd-llfl)

2025-12-30 17:14:55 -08:00

version_tracking.go

chore: remove issue ID references from comments and changelogs

2025-12-28 10:05:16 -08:00

version.go

chore: Bump version to 0.41.0

2025-12-29 16:34:14 -08:00

where.go

feat: add 'bd where' command to show active beads location (bd-8x43)

2025-12-27 21:27:44 -08:00

wisp.go

fix: --var flag now allows commas in values (#786)

2025-12-29 16:17:51 -08:00

worktree_cmd.go

fix: Add nolint comments for gosec/errcheck/unparam warnings

2025-12-29 14:39:43 -08:00

worktree_daemon_test.go

refactor: remove unused bd pin/unpin/hook commands (bd-x0zl)

2025-12-27 16:02:15 -08:00

worktree_test.go

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worktree.go

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