- Fix doctor to treat empty deletions.jsonl as valid (0 entries OK status) - Fix HydrateDeletionsManifest to create empty file when no deletions found - Add --parent flag documentation to onboard command - Add CLI --help tip throughout onboard documentation 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>