- Implement robust worktree detection using git-dir vs git-common-dir comparison - Add prominent warning when daemon mode is active in a worktree - Warn in 3 places: initial connection, auto-start, and daemon start command - Show shared database path and clarify BEADS_AUTO_START_DAEMON behavior - Document limitations and solutions in README.md and AGENTS.md - Add comprehensive tests for detection and path truncation Fixes #55 Amp-Thread-ID: https://ampcode.com/threads/T-254eb9e3-1a42-42d7-afdf-b7ca2d2dcb8b Co-authored-by: Amp <amp@ampcode.com>