Users could not run 'bd config set no-db true' without already having a
database, creating a chicken-and-egg problem. The PersistentPreRunE
would fail with 'no beads database found' before the config command
could even run.
The fix detects when a yaml-only config operation is being attempted
(config set/get with keys like no-db, no-daemon, sync.branch, etc.)
and allows it to proceed without requiring a database.
Before:
$ bd config set no-db true
Error: no beads database found
After:
$ bd config set no-db true
Set no-db = true (in config.yaml)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
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